BLASTX nr result

ID: Panax21_contig00005265 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00005265
         (607 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285171.1| PREDICTED: double-stranded RNA-binding prote...   117   2e-24
emb|CAN80689.1| hypothetical protein VITISV_005501 [Vitis vinifera]   110   3e-22
ref|NP_001241242.1| uncharacterized protein LOC100812728 [Glycin...   103   2e-20
ref|XP_003541993.1| PREDICTED: double-stranded RNA-binding prote...   103   3e-20
ref|XP_003540172.1| PREDICTED: double-stranded RNA-binding prote...   102   4e-20

>ref|XP_002285171.1| PREDICTED: double-stranded RNA-binding protein 2-like [Vitis
           vinifera]
          Length = 413

 Score =  117 bits (292), Expect = 2e-24
 Identities = 79/211 (37%), Positives = 109/211 (51%), Gaps = 10/211 (4%)
 Frame = +3

Query: 3   QQSESSLLQKVNHDEQEHVTVARALQKYRIRAKIS-------NTSFPIRFPMLKPRPAST 161
           +++ +S  +  N+DE E +T+ARAL  YR++ K++         SFP +FP+   R  S 
Sbjct: 158 KEAANSSSETENNDELEQITIARALLNYRLKEKMAIANSPSGTLSFPKKFPIQNSRLFSP 217

Query: 162 QPPSATKSKILPLISPKTAPRGRPVGPTINNTSIRPKTIPLSGPIN--ANRNDILVSSEI 335
           Q P    SKILPLI  KT PR RP  PT N+ S+ P + P S P +  ++ N +  S  +
Sbjct: 218 QLPPVATSKILPLICQKTPPRNRPPSPTANDGSM-PSSQPRSRPTSTTSSENPVPPSQPL 276

Query: 336 SLQSPPMINTVNDHLLPSAESPRFLHQKFPAAGAAPYIPVGHFR-PHHGIAPPVTMRNAI 512
           +L     +  V               Q+FPAAGA PY+P+  FR P+HGIAPPVT+RNA+
Sbjct: 277 ALD----VRAVRP-------------QRFPAAGAVPYVPIRQFRTPYHGIAPPVTIRNAV 319

Query: 513 XXXXXXXXXXXXXXXXXXXXXXMGIAPPVCV 605
                                 M IAPPVCV
Sbjct: 320 ---PVFSAPPSGLPPQVIRAPHMRIAPPVCV 347


>emb|CAN80689.1| hypothetical protein VITISV_005501 [Vitis vinifera]
          Length = 403

 Score =  110 bits (274), Expect = 3e-22
 Identities = 75/209 (35%), Positives = 102/209 (48%), Gaps = 8/209 (3%)
 Frame = +3

Query: 3   QQSESSLLQKVNHDEQEHVTVARALQKYRIRAKIS-------NTSFPIRFPMLKPRPAST 161
           +++ SS  +  N+DE E +T+ARAL  YR++ K++         SFP +FP+   R  S 
Sbjct: 158 KEAASSSSETENNDELEQITIARALLNYRLKEKMAIANSPSGTLSFPKKFPIQNSRLFSP 217

Query: 162 QPPSATKSKILPLISPKTAPRGRPVGPTINNTSIRPKTIPLSGPINANRNDILVSSEISL 341
           Q P    SKILPLI  KT PR RP  PT N+   +   +         +N +  S  ++L
Sbjct: 218 QLPPVATSKILPLICQKTPPRNRPPSPTANDDPRQQHQV---------KNPVPPSQPLAL 268

Query: 342 QSPPMINTVNDHLLPSAESPRFLHQKFPAAGAAPYIPVGHFR-PHHGIAPPVTMRNAIXX 518
                +  V               Q+FPAAGA PY+P+  FR P+HGIAPPVT+RNA+  
Sbjct: 269 D----VRAVRP-------------QRFPAAGAVPYVPIRQFRTPYHGIAPPVTIRNAV-- 309

Query: 519 XXXXXXXXXXXXXXXXXXXXMGIAPPVCV 605
                               M IAPPVCV
Sbjct: 310 -PVFSAPPSGLPPQVIRAPHMRIAPPVCV 337


>ref|NP_001241242.1| uncharacterized protein LOC100812728 [Glycine max]
           gi|255644888|gb|ACU22944.1| unknown [Glycine max]
          Length = 401

 Score =  103 bits (257), Expect = 2e-20
 Identities = 68/177 (38%), Positives = 90/177 (50%), Gaps = 7/177 (3%)
 Frame = +3

Query: 3   QQSESSLLQKVNHDEQEHVTVARALQKYRIRAKISNTS------FPIRFPMLKPRPASTQ 164
           +++  S  +  N+DE E +T+ARAL  YR++ KIS ++      FP +F +  PRP S Q
Sbjct: 158 KETARSSTEPENNDELEQITIARALLNYRLKEKISMSNSNAPVPFPKKFQIQNPRPTSPQ 217

Query: 165 PPSATKSKILPLISPKTAPRGRP-VGPTINNTSIRPKTIPLSGPINANRNDILVSSEISL 341
           PP A  SKILPLI  K APR R  VG               + P  A+ +          
Sbjct: 218 PPPAATSKILPLICQKAAPRSRHLVG---------------ASPARASCD---------- 252

Query: 342 QSPPMINTVNDHLLPSAESPRFLHQKFPAAGAAPYIPVGHFRPHHGIAPPVTMRNAI 512
                 N+    L  + ES      KFPAAGAAPY+P+   RP  G+APPVT+R AI
Sbjct: 253 ------NSAMPQLSATPESRGIRRPKFPAAGAAPYVPIRQMRPCQGMAPPVTIRTAI 303


>ref|XP_003541993.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
          Length = 393

 Score =  103 bits (256), Expect = 3e-20
 Identities = 69/177 (38%), Positives = 91/177 (51%), Gaps = 7/177 (3%)
 Frame = +3

Query: 3   QQSESSLLQKVNHDEQEHVTVARALQKYRIRAKI--SNTSFPI----RFPMLKPRPASTQ 164
           +++ SS  +  N+DE E +T+ARAL  YR++ K+  SN + P+    RF +  PRP S+Q
Sbjct: 158 KETASSSTEPENNDEVEQITIARALLNYRLKEKMTMSNPNAPLPFHERFQIQNPRPISSQ 217

Query: 165 PPSATKSKILPLISPKTAPRGRPVGPTINNTSIRPKTIPLSGPINANRNDILVSSEISLQ 344
           PP AT SKILPLI  KTAPR +P   T           P +     + N  L     SL+
Sbjct: 218 PPPATSSKILPLICQKTAPRSKPSLATTTTNESPGSRHPQAAVAVTSDNSNLPQQSCSLE 277

Query: 345 SPPMINTVNDHLLPSAESPRFLHQKFPAAGAAPYIPVGHFRPH-HGIAPPVTMRNAI 512
                          A  P     KFPAAGAAPY+P+   RP    IAPPVT+R  +
Sbjct: 278 C-------------RATRP----LKFPAAGAAPYVPIRQMRPSCQRIAPPVTIRTVV 317


>ref|XP_003540172.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
          Length = 411

 Score =  102 bits (255), Expect = 4e-20
 Identities = 71/181 (39%), Positives = 93/181 (51%), Gaps = 11/181 (6%)
 Frame = +3

Query: 3   QQSESSLLQKVNHDEQEHVTVARALQKYRIRAKI--SNTSFPI----RFPMLKPRPASTQ 164
           +++ SS  +  N+DE E +T+ARAL  YR++ K+  SN + P+    RF +  PRP S+Q
Sbjct: 158 KETASSSTEPENNDELEQITIARALLNYRLKEKMAMSNPNAPVSFHKRFQIQNPRPISSQ 217

Query: 165 PPSATKSKILPLISPKTAPRGRPVGPTINNTSIRPKTIPLSGPINANRNDILVSSEISLQ 344
           PP AT SKILPLI  KTAPR +P   T  N S R +                        
Sbjct: 218 PPPATSSKILPLICQKTAPRSKPSLATTANESPRSR------------------------ 253

Query: 345 SPPMINTVNDHLLP----SAESPRFLHQKFPAAGAAPYIPVGHFRPH-HGIAPPVTMRNA 509
            P    T ++  LP    S ES      KF AAGAAPY+P+   RP    IAPPVT+R  
Sbjct: 254 HPQAAMTSDNSTLPPQSCSLESRATRPLKFRAAGAAPYVPIRQMRPSCQRIAPPVTIRTV 313

Query: 510 I 512
           +
Sbjct: 314 V 314


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