BLASTX nr result
ID: Panax21_contig00005011
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax21_contig00005011
(1406 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002521847.1| Armadillo repeat-containing protein, putativ... 104 8e-27
ref|XP_002869184.1| hypothetical protein ARALYDRAFT_328350 [Arab... 100 2e-25
emb|CAA19876.1| putative protein [Arabidopsis thaliana] gi|72703... 98 5e-25
ref|NP_567943.1| RING/U-box domain-containing protein [Arabidops... 98 7e-25
gb|AAM62531.1| unknown [Arabidopsis thaliana] 98 9e-25
>ref|XP_002521847.1| Armadillo repeat-containing protein, putative [Ricinus communis]
gi|223538885|gb|EEF40483.1| Armadillo repeat-containing
protein, putative [Ricinus communis]
Length = 719
Score = 104 bits (259), Expect(2) = 8e-27
Identities = 42/65 (64%), Positives = 51/65 (78%)
Frame = +2
Query: 287 PAADDVCPICFGNFTIPFKTNCGHWFCGSCILQFWNYKASLQKFKCPICSCLISKLTPEA 466
P DD CPICFG FTIP K+ CGHW+CGSCILQ+WNY A+ + KCP+C+ I+KLTPEA
Sbjct: 61 PPGDDCCPICFGTFTIPCKSICGHWYCGSCILQYWNYSAASKPCKCPMCASRITKLTPEA 120
Query: 467 CLLSE 481
L S+
Sbjct: 121 SLYSQ 125
Score = 43.9 bits (102), Expect(2) = 8e-27
Identities = 20/28 (71%), Positives = 24/28 (85%)
Frame = +3
Query: 486 QEKEVTEVLENVHRYNRLFEGGVCGLVQ 569
Q+++VT+VLENV RYNRLF GG GLVQ
Sbjct: 127 QDQDVTKVLENVDRYNRLFIGGALGLVQ 154
>ref|XP_002869184.1| hypothetical protein ARALYDRAFT_328350 [Arabidopsis lyrata subsp.
lyrata] gi|297315020|gb|EFH45443.1| hypothetical protein
ARALYDRAFT_328350 [Arabidopsis lyrata subsp. lyrata]
Length = 683
Score = 99.8 bits (247), Expect(2) = 2e-25
Identities = 39/66 (59%), Positives = 52/66 (78%)
Frame = +2
Query: 275 KNDCPAADDVCPICFGNFTIPFKTNCGHWFCGSCILQFWNYKASLQKFKCPICSCLISKL 454
+++ P DDVCPICFG+FT+P + NCGHW+CG+CILQ+WNY A + KCP+C I+KL
Sbjct: 64 ESETPPEDDVCPICFGSFTVPCRGNCGHWYCGNCILQYWNYAAISRPCKCPMCVRHITKL 123
Query: 455 TPEACL 472
+PEA L
Sbjct: 124 SPEASL 129
Score = 43.9 bits (102), Expect(2) = 2e-25
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = +3
Query: 483 RQEKEVTEVLENVHRYNRLFEGGVCGLVQV 572
RQE+EV EVL+ V RYNRLF GG+ G VQ+
Sbjct: 132 RQEQEVKEVLDKVRRYNRLFVGGLTGFVQM 161
>emb|CAA19876.1| putative protein [Arabidopsis thaliana] gi|7270343|emb|CAB80111.1|
putative protein [Arabidopsis thaliana]
Length = 670
Score = 98.2 bits (243), Expect(2) = 5e-25
Identities = 50/119 (42%), Positives = 67/119 (56%), Gaps = 8/119 (6%)
Frame = +2
Query: 140 RDEIEN------PDDPPVVVSRGGKRNEEQLGNSGSDSXXXXXXXXXXXXRK--NDCPAA 295
RDE+E P+ V+ RNE L + + RK ++ P
Sbjct: 11 RDEMEVTTADVFPEVNAAAVTENLDRNELVLADGVVSAEERNIEPDNRGERKIESESPPE 70
Query: 296 DDVCPICFGNFTIPFKTNCGHWFCGSCILQFWNYKASLQKFKCPICSCLISKLTPEACL 472
DDVCPICFG+FT+P + NCGHW+CG+CILQ+WNY A + KCP+C I+KL+PE L
Sbjct: 71 DDVCPICFGSFTVPCRGNCGHWYCGNCILQYWNYAAISRPCKCPMCVRHITKLSPEPSL 129
Score = 43.9 bits (102), Expect(2) = 5e-25
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = +3
Query: 483 RQEKEVTEVLENVHRYNRLFEGGVCGLVQV 572
RQE+EV EVL+ V RYNRLF GG+ G VQ+
Sbjct: 132 RQEQEVKEVLDKVRRYNRLFVGGLTGFVQM 161
>ref|NP_567943.1| RING/U-box domain-containing protein [Arabidopsis thaliana]
gi|63003762|gb|AAY25410.1| At4g33940 [Arabidopsis
thaliana] gi|87116618|gb|ABD19673.1| At4g33940
[Arabidopsis thaliana] gi|332660897|gb|AEE86297.1|
RING/U-box domain-containing protein [Arabidopsis
thaliana]
Length = 262
Score = 98.2 bits (243), Expect(2) = 7e-25
Identities = 50/119 (42%), Positives = 67/119 (56%), Gaps = 8/119 (6%)
Frame = +2
Query: 140 RDEIEN------PDDPPVVVSRGGKRNEEQLGNSGSDSXXXXXXXXXXXXRK--NDCPAA 295
RDE+E P+ V+ RNE L + + RK ++ P
Sbjct: 11 RDEMEVTTADVFPEVNAAAVTENLDRNELVLADGVVSAEERNIEPDNRGERKIESESPPE 70
Query: 296 DDVCPICFGNFTIPFKTNCGHWFCGSCILQFWNYKASLQKFKCPICSCLISKLTPEACL 472
DDVCPICFG+FT+P + NCGHW+CG+CILQ+WNY A + KCP+C I+KL+PE L
Sbjct: 71 DDVCPICFGSFTVPCRGNCGHWYCGNCILQYWNYAAISRPCKCPMCVRHITKLSPEPSL 129
Score = 43.5 bits (101), Expect(2) = 7e-25
Identities = 20/29 (68%), Positives = 23/29 (79%)
Frame = +3
Query: 483 RQEKEVTEVLENVHRYNRLFEGGVCGLVQ 569
RQE+EV EVL+ V RYNRLF GG+ G VQ
Sbjct: 132 RQEQEVKEVLDKVRRYNRLFVGGLTGFVQ 160
>gb|AAM62531.1| unknown [Arabidopsis thaliana]
Length = 262
Score = 97.8 bits (242), Expect(2) = 9e-25
Identities = 38/66 (57%), Positives = 51/66 (77%)
Frame = +2
Query: 275 KNDCPAADDVCPICFGNFTIPFKTNCGHWFCGSCILQFWNYKASLQKFKCPICSCLISKL 454
+++ P DDVCPICFG+FT+P + NCGHW+CG+CILQ+WNY A + KCP+C I+KL
Sbjct: 64 ESESPPEDDVCPICFGSFTVPCRGNCGHWYCGNCILQYWNYAAISRPCKCPMCVRHITKL 123
Query: 455 TPEACL 472
+PE L
Sbjct: 124 SPEPSL 129
Score = 43.5 bits (101), Expect(2) = 9e-25
Identities = 20/29 (68%), Positives = 23/29 (79%)
Frame = +3
Query: 483 RQEKEVTEVLENVHRYNRLFEGGVCGLVQ 569
RQE+EV EVL+ V RYNRLF GG+ G VQ
Sbjct: 132 RQEQEVKEVLDKVRRYNRLFVGGLTGFVQ 160