BLASTX nr result

ID: Panax21_contig00004940 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00004940
         (648 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN60067.1| hypothetical protein VITISV_012399 [Vitis vinifera]    39   1e-06
emb|CAN74986.1| hypothetical protein VITISV_008771 [Vitis vinifera]    38   9e-06
emb|CAN78062.1| hypothetical protein VITISV_036399 [Vitis vinifera]    38   1e-05

>emb|CAN60067.1| hypothetical protein VITISV_012399 [Vitis vinifera]
          Length = 1707

 Score = 38.5 bits (88), Expect(3) = 1e-06
 Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
 Frame = +1

Query: 307  IIFWCTACQS-WLAMLLLFGVSWVVPRFVVE-LRRWRGF---KVHMRKS*EMVPHCILCC 471
            I+  C+  ++ W  +  LFGV WV+P    E L  WRGF   K H RK  +  P C L  
Sbjct: 1596 ILIHCSKVRALWELLFALFGVCWVLPSSARETLIEWRGFMLGKKH-RKVWKAAPLC-LFW 1653

Query: 472  SIWREQNERCFE 507
             +W E+N   F+
Sbjct: 1654 EVWMERNRIAFD 1665



 Score = 34.3 bits (77), Expect(3) = 1e-06
 Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
 Frame = +2

Query: 5    DWEL--VDYVLGLISGVQLLIRQADSVN*EGSTGGNFSVKN*YW-VGEGTSILISHGRLS 175
            DWE+  V+ +L  I G +L     D +  + ++ G+FSVK+ Y  +    + L  HG + 
Sbjct: 1487 DWEVEEVERLLLTIRGARLSPLMEDRMMWKVTSNGSFSVKSLYNDLSSRRAGLFPHGLIW 1546

Query: 176  EYFWIRVDNMFL*SASRGAILTIDYLQKRWLIFVGWCF 289
                    + F   AS G +LT+D L+KR       CF
Sbjct: 1547 NPSVPSKVSFFAWEASWGKVLTMDQLKKRGWAVANRCF 1584



 Score = 24.3 bits (51), Expect(3) = 1e-06
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 291  EGRSVDHLLVHCLSI 335
            E  S+DH+L+HC  +
Sbjct: 1589 EEESIDHILIHCSKV 1603


>emb|CAN74986.1| hypothetical protein VITISV_008771 [Vitis vinifera]
          Length = 1971

 Score = 37.7 bits (86), Expect(3) = 9e-06
 Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
 Frame = +1

Query: 307  IIFWCTACQS-WLAMLLLFGVSWVVPRFVVE-LRRWRGF---KVHMRKS*EMVPHCILCC 471
            I+  C+  ++ W  +  LFGV WV+P    E L  WRGF   K H RK  +  P C L  
Sbjct: 1408 ILIHCSKARALWELLFALFGVCWVLPFSARETLIEWRGFMLGKKH-RKVWKAAPLC-LFW 1465

Query: 472  SIWREQNERCFE 507
            ++W E+N   F+
Sbjct: 1466 AVWIERNRIAFD 1477



 Score = 32.3 bits (72), Expect(3) = 9e-06
 Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
 Frame = +2

Query: 5    DWEL--VDYVLGLISGVQLLIRQADSVN*EGSTGGNFSVKN*YW-VGEGTSILISHGRLS 175
            DWE+  V+ +L  I G +L     D +  + +  G FSVK+ Y  +    + +  HG + 
Sbjct: 1299 DWEVEEVERLLLTIRGARLXPLMEDRMMWKANXNGIFSVKSLYNDLFSRRAGJFPHGLIW 1358

Query: 176  EYFWIRVDNMFL*SASRGAILTIDYLQKRWLIFVGWCF 289
                    + F   AS G +LT+D L+KR       CF
Sbjct: 1359 NPXVPSKVSFFAWEASWGKVLTMDQLKKRGWXVANRCF 1396



 Score = 23.9 bits (50), Expect(3) = 9e-06
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 291  EGRSVDHLLVHC 326
            E  S+DH+L+HC
Sbjct: 1401 EEESIDHILIHC 1412


>emb|CAN78062.1| hypothetical protein VITISV_036399 [Vitis vinifera]
          Length = 522

 Score = 38.1 bits (87), Expect(3) = 1e-05
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
 Frame = +1

Query: 304 LIIFWCTACQSWLAMLLLFGVSWVVPRFVVE-LRRWRGFKVHMR--KS*EMVPHCILCCS 474
           ++I    A + W  +  LFGV WV+P    E L  WRGF +  +  K  +  P C L  +
Sbjct: 411 ILIHCSKARELWDLLFALFGVCWVLPSSARETLVEWRGFMLGKKHSKVWKAAPLC-LFWA 469

Query: 475 IWREQNERCFE 507
           +W E+N+  F+
Sbjct: 470 VWMERNKIAFD 480



 Score = 32.0 bits (71), Expect(3) = 1e-05
 Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
 Frame = +2

Query: 5   DWEL--VDYVLGLISGVQLLIRQADSVN*EGSTGGNFSVKN*YW-VGEGTSILISHGRLS 175
           DWE+  V+ +L  I G +L     D +  + ++ G+FSV++ Y  +    +    HG + 
Sbjct: 302 DWEVEEVERLLLAIRGARLSPLMEDRMMWKVTSNGSFSVRSLYNDLSSRRAGFFPHGLIW 361

Query: 176 EYFWIRVDNMFL*SASRGAILTIDYLQKRWLIFVGWCF 289
                     F   AS G +LT+D L+KR    V  CF
Sbjct: 362 NPSVPSKVCFFAWEASWGKVLTMDQLKKRGXAVVNRCF 399



 Score = 23.9 bits (50), Expect(3) = 1e-05
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 291 EGRSVDHLLVHC 326
           E  S+DH+L+HC
Sbjct: 404 EEESIDHILIHC 415


Top