BLASTX nr result
ID: Panax21_contig00004875
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax21_contig00004875
(544 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002533676.1| pentatricopeptide repeat-containing protein,... 109 8e-45
ref|XP_002274344.1| PREDICTED: pentatricopeptide repeat-containi... 97 1e-40
ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containi... 62 3e-19
ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containi... 62 3e-19
ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containi... 62 7e-18
>ref|XP_002533676.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223526427|gb|EEF28706.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 726
Score = 109 bits (273), Expect(2) = 8e-45
Identities = 60/115 (52%), Positives = 75/115 (65%), Gaps = 10/115 (8%)
Frame = +3
Query: 3 TSKPPSLLLHTHHLKTQY---------SCNDLRSLKQFHASLITSTGFQDRISNDS-KLI 152
T+K LLLH+H+LKT + SC DLR+LKQ HASL+ STGF + IS S KLI
Sbjct: 10 TTKHHPLLLHSHYLKTHHLSSLFSLLHSCKDLRTLKQIHASLLVSTGFNESISFPSTKLI 69
Query: 153 SLYAQFNDLDSAVLVFKGLSEPNTFIWNSIIKAHIDNNLVDSTFNFYKCMRKLGV 317
S Y++FNDL+SA+ VF L EPNT WN I++ H+D LV YK MR+ GV
Sbjct: 70 SFYSKFNDLESAISVFSLLQEPNTLSWNLIMRTHLDFGLVTEALLLYKKMRESGV 124
Score = 96.3 bits (238), Expect(2) = 8e-45
Identities = 43/76 (56%), Positives = 56/76 (73%)
Frame = +1
Query: 316 FTFPIMNRAVLLLQNSFQFGVLIHCSAIRMGFNSDVYFCNTMIDVYVKGGVFGYACQVFD 495
FTFP +NRAV+ L++ G ++HC A+++GF D+YFCNTMI+VY + G Y +FD
Sbjct: 129 FTFPTINRAVMSLKSDVLLGKMVHCDAMKLGFGYDLYFCNTMIEVYARCGCVYYGRVMFD 188
Query: 496 EMPDRDLVSWTSMISG 543
EM RDLVSWTSMISG
Sbjct: 189 EMSPRDLVSWTSMISG 204
>ref|XP_002274344.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 739
Score = 97.1 bits (240), Expect(2) = 1e-40
Identities = 54/112 (48%), Positives = 69/112 (61%), Gaps = 12/112 (10%)
Frame = +3
Query: 18 SLLLHTHHLKTQY------------SCNDLRSLKQFHASLITSTGFQDRISNDSKLISLY 161
S+L THHL + Y SCN+L++LK+ HASLI S+GFQ +S SKLI+LY
Sbjct: 35 SVLFRTHHLNSHYLTCSFPYSSLLHSCNNLQALKRIHASLIVSSGFQP-LSVASKLITLY 93
Query: 162 AQFNDLDSAVLVFKGLSEPNTFIWNSIIKAHIDNNLVDSTFNFYKCMRKLGV 317
+Q ND SA + EPNT IWNSIIK+H+D+ L Y MR+LGV
Sbjct: 94 SQLNDFRSAFSICNSFEEPNTVIWNSIIKSHVDSGLFGYALLQYGRMRELGV 145
Score = 94.7 bits (234), Expect(2) = 1e-40
Identities = 44/76 (57%), Positives = 57/76 (75%)
Frame = +1
Query: 316 FTFPIMNRAVLLLQNSFQFGVLIHCSAIRMGFNSDVYFCNTMIDVYVKGGVFGYACQVFD 495
FTFPI+N+A+ L ++G +HC A++MGF DVYF NTM++VYVK G G A ++FD
Sbjct: 150 FTFPIINQAIWSLGCRVEYGETVHCVAMKMGFGQDVYFGNTMLEVYVKCGSIGNASKLFD 209
Query: 496 EMPDRDLVSWTSMISG 543
EM RDLVSWTS+ISG
Sbjct: 210 EMTHRDLVSWTSIISG 225
>ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Cucumis sativus]
Length = 939
Score = 61.6 bits (148), Expect(2) = 3e-19
Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Frame = +1
Query: 316 FTFP-IMNRAVLLLQNSFQFGVLIHCSAIRMGFNSDVYFCNTMIDVYVKGGVFGYACQVF 492
FTFP ++N +L + G ++H A+ MGF SD+Y N +ID+Y + A VF
Sbjct: 122 FTFPSVINSCARILD--LELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVF 179
Query: 493 DEMPDRDLVSWTSMISG 543
+EM +RD VSW S+ISG
Sbjct: 180 EEMSNRDSVSWNSLISG 196
Score = 58.5 bits (140), Expect(2) = 3e-19
Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Frame = +3
Query: 3 TSKPPSLLLHTHHLKTQYSCNDLRSLKQFHASLITSTGFQDRISNDSKLISLYAQFNDLD 182
T +P L + LKT S + L+ H+ +ITS G + KLIS YAQ D
Sbjct: 13 TPEPSQEFLRSSLLKTLSSAKNTPQLRTVHSLIITS-GLSLSVIFSGKLISKYAQVKDPI 71
Query: 183 SAVLVFKGLSEP-NTFIWNSIIKAHIDNNLVDSTFNFYKCMRK 308
S+V VF+ +S N ++WNSII+A N L +Y MR+
Sbjct: 72 SSVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMRE 114
Score = 47.4 bits (111), Expect(2) = 5e-08
Identities = 19/53 (35%), Positives = 32/53 (60%)
Frame = +1
Query: 382 IHCSAIRMGFNSDVYFCNTMIDVYVKGGVFGYACQVFDEMPDRDLVSWTSMIS 540
IHC I+ GF +++ N+++DVY K G +VF M D++SW ++I+
Sbjct: 444 IHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIA 496
Score = 34.7 bits (78), Expect(2) = 5e-08
Identities = 27/97 (27%), Positives = 43/97 (44%)
Frame = +3
Query: 15 PSLLLHTHHLKTQYSCNDLRSLKQFHASLITSTGFQDRISNDSKLISLYAQFNDLDSAVL 194
P +L T ++ DL+ K H LI S GF+ + LI +YA+ DL +A
Sbjct: 320 PDMLSITSTIRACGQSGDLQVGKFVHKYLIGS-GFECDTVACNILIDMYAKCGDLLAAQE 378
Query: 195 VFKGLSEPNTFIWNSIIKAHIDNNLVDSTFNFYKCMR 305
VF ++ WNS+I + + +K M+
Sbjct: 379 VFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMK 415
Score = 42.7 bits (99), Expect(2) = 4e-06
Identities = 21/56 (37%), Positives = 33/56 (58%)
Frame = +1
Query: 373 GVLIHCSAIRMGFNSDVYFCNTMIDVYVKGGVFGYACQVFDEMPDRDLVSWTSMIS 540
G IH + GF S+V N +I++Y K G +VF M ++D+V+WT++IS
Sbjct: 542 GKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALIS 597
Score = 32.7 bits (73), Expect(2) = 4e-06
Identities = 19/84 (22%), Positives = 39/84 (46%)
Frame = +3
Query: 66 DLRSLKQFHASLITSTGFQDRISNDSKLISLYAQFNDLDSAVLVFKGLSEPNTFIWNSII 245
D+ + H +I GF+ + + L+ +YA+ ++D + VF +S + WN++I
Sbjct: 437 DINQGRGIHCDVI-KFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVI 495
Query: 246 KAHIDNNLVDSTFNFYKCMRKLGV 317
+ + + F MR G+
Sbjct: 496 ASSVHFDDCTVGFQMINEMRTEGL 519
>ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Cucumis sativus]
Length = 895
Score = 61.6 bits (148), Expect(2) = 3e-19
Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Frame = +1
Query: 316 FTFP-IMNRAVLLLQNSFQFGVLIHCSAIRMGFNSDVYFCNTMIDVYVKGGVFGYACQVF 492
FTFP ++N +L + G ++H A+ MGF SD+Y N +ID+Y + A VF
Sbjct: 122 FTFPSVINSCARILD--LELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVF 179
Query: 493 DEMPDRDLVSWTSMISG 543
+EM +RD VSW S+ISG
Sbjct: 180 EEMSNRDSVSWNSLISG 196
Score = 58.5 bits (140), Expect(2) = 3e-19
Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Frame = +3
Query: 3 TSKPPSLLLHTHHLKTQYSCNDLRSLKQFHASLITSTGFQDRISNDSKLISLYAQFNDLD 182
T +P L + LKT S + L+ H+ +ITS G + KLIS YAQ D
Sbjct: 13 TPEPSQEFLRSSLLKTLSSAKNTPQLRTVHSLIITS-GLSLSVIFSGKLISKYAQVKDPI 71
Query: 183 SAVLVFKGLSEP-NTFIWNSIIKAHIDNNLVDSTFNFYKCMRK 308
S+V VF+ +S N ++WNSII+A N L +Y MR+
Sbjct: 72 SSVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMRE 114
Score = 47.4 bits (111), Expect(2) = 5e-08
Identities = 19/53 (35%), Positives = 32/53 (60%)
Frame = +1
Query: 382 IHCSAIRMGFNSDVYFCNTMIDVYVKGGVFGYACQVFDEMPDRDLVSWTSMIS 540
IHC I+ GF +++ N+++DVY K G +VF M D++SW ++I+
Sbjct: 444 IHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIA 496
Score = 34.7 bits (78), Expect(2) = 5e-08
Identities = 27/97 (27%), Positives = 43/97 (44%)
Frame = +3
Query: 15 PSLLLHTHHLKTQYSCNDLRSLKQFHASLITSTGFQDRISNDSKLISLYAQFNDLDSAVL 194
P +L T ++ DL+ K H LI S GF+ + LI +YA+ DL +A
Sbjct: 320 PDMLSITSTIRACGQSGDLQVGKFVHKYLIGS-GFECDTVACNILIDMYAKCGDLLAAQE 378
Query: 195 VFKGLSEPNTFIWNSIIKAHIDNNLVDSTFNFYKCMR 305
VF ++ WNS+I + + +K M+
Sbjct: 379 VFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMK 415
Score = 42.7 bits (99), Expect(2) = 4e-06
Identities = 21/56 (37%), Positives = 33/56 (58%)
Frame = +1
Query: 373 GVLIHCSAIRMGFNSDVYFCNTMIDVYVKGGVFGYACQVFDEMPDRDLVSWTSMIS 540
G IH + GF S+V N +I++Y K G +VF M ++D+V+WT++IS
Sbjct: 542 GKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALIS 597
Score = 32.7 bits (73), Expect(2) = 4e-06
Identities = 19/84 (22%), Positives = 39/84 (46%)
Frame = +3
Query: 66 DLRSLKQFHASLITSTGFQDRISNDSKLISLYAQFNDLDSAVLVFKGLSEPNTFIWNSII 245
D+ + H +I GF+ + + L+ +YA+ ++D + VF +S + WN++I
Sbjct: 437 DINQGRGIHCDVI-KFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVI 495
Query: 246 KAHIDNNLVDSTFNFYKCMRKLGV 317
+ + + F MR G+
Sbjct: 496 ASSVHFDDCTVGFQMINEMRTEGL 519
>ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
gi|449513125|ref|XP_004164238.1| PREDICTED:
pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
Length = 645
Score = 61.6 bits (148), Expect(2) = 7e-18
Identities = 27/60 (45%), Positives = 42/60 (70%)
Frame = +1
Query: 361 SFQFGVLIHCSAIRMGFNSDVYFCNTMIDVYVKGGVFGYACQVFDEMPDRDLVSWTSMIS 540
S + G ++HC AI++G SD+Y ++DVY +GG A Q+FD+MP+R LVS T+M++
Sbjct: 156 SLESGKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLT 215
Score = 53.9 bits (128), Expect(2) = 7e-18
Identities = 31/80 (38%), Positives = 42/80 (52%)
Frame = +3
Query: 78 LKQFHASLITSTGFQDRISNDSKLISLYAQFNDLDSAVLVFKGLSEPNTFIWNSIIKAHI 257
L Q HASL+ + + I N KL YA LD +V VF EPN F +++II +H+
Sbjct: 63 LLQIHASLLRRGLYHNPILN-FKLQRSYAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHV 121
Query: 258 DNNLVDSTFNFYKCMRKLGV 317
+ L D F +Y M GV
Sbjct: 122 QSRLFDRAFGYYSQMLSCGV 141