BLASTX nr result

ID: Panax21_contig00004658 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00004658
         (630 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279554.2| PREDICTED: zinc finger CCCH domain-containin...   204   8e-51
emb|CBI27906.3| unnamed protein product [Vitis vinifera]              204   8e-51
ref|XP_004135717.1| PREDICTED: zinc finger CCCH domain-containin...   192   6e-47
ref|XP_002514115.1| nucleic acid binding protein, putative [Rici...   185   5e-45
ref|XP_002332828.1| predicted protein [Populus trichocarpa] gi|2...   185   5e-45

>ref|XP_002279554.2| PREDICTED: zinc finger CCCH domain-containing protein 64-like
           [Vitis vinifera]
          Length = 607

 Score =  204 bits (520), Expect = 8e-51
 Identities = 100/137 (72%), Positives = 113/137 (82%)
 Frame = +1

Query: 1   VVFFEWVYIRATHANLQAIPIPSSRESSVLEIFNLAAERMGFKFVVLKSGISSEGRNLLR 180
           VVFFEW++ R THAN+QA+PIP SR S+V  IF LAAE++GF+FV  KS   SEGR  LR
Sbjct: 469 VVFFEWIFKRGTHANIQAVPIPLSRASAVKNIFILAAEKLGFQFVTTKSNNDSEGRKSLR 528

Query: 181 TQFDRKCSLFYVELPGGTILSHAIEESEKFPAQFGREVLAGLLNMADRADWRNCKLSKGE 360
            QFD K S FYVELP GTILSHAIE++EKFP QFGREVLAGLLNMADRADWRNCK SK +
Sbjct: 529 AQFDDKISFFYVELPDGTILSHAIEDNEKFPVQFGREVLAGLLNMADRADWRNCKQSKED 588

Query: 361 EIKMAENFKNGFEKFDP 411
           E+KMAE FKN F+KFDP
Sbjct: 589 EMKMAEVFKNQFKKFDP 605


>emb|CBI27906.3| unnamed protein product [Vitis vinifera]
          Length = 593

 Score =  204 bits (520), Expect = 8e-51
 Identities = 100/137 (72%), Positives = 113/137 (82%)
 Frame = +1

Query: 1   VVFFEWVYIRATHANLQAIPIPSSRESSVLEIFNLAAERMGFKFVVLKSGISSEGRNLLR 180
           VVFFEW++ R THAN+QA+PIP SR S+V  IF LAAE++GF+FV  KS   SEGR  LR
Sbjct: 455 VVFFEWIFKRGTHANIQAVPIPLSRASAVKNIFILAAEKLGFQFVTTKSNNDSEGRKSLR 514

Query: 181 TQFDRKCSLFYVELPGGTILSHAIEESEKFPAQFGREVLAGLLNMADRADWRNCKLSKGE 360
            QFD K S FYVELP GTILSHAIE++EKFP QFGREVLAGLLNMADRADWRNCK SK +
Sbjct: 515 AQFDDKISFFYVELPDGTILSHAIEDNEKFPVQFGREVLAGLLNMADRADWRNCKQSKED 574

Query: 361 EIKMAENFKNGFEKFDP 411
           E+KMAE FKN F+KFDP
Sbjct: 575 EMKMAEVFKNQFKKFDP 591


>ref|XP_004135717.1| PREDICTED: zinc finger CCCH domain-containing protein 64-like
           [Cucumis sativus] gi|449489882|ref|XP_004158448.1|
           PREDICTED: zinc finger CCCH domain-containing protein
           64-like [Cucumis sativus]
          Length = 606

 Score =  192 bits (487), Expect = 6e-47
 Identities = 97/139 (69%), Positives = 108/139 (77%)
 Frame = +1

Query: 1   VVFFEWVYIRATHANLQAIPIPSSRESSVLEIFNLAAERMGFKFVVLKSGISSEGRNLLR 180
           VVFFEWV  R+THANLQA+PIPSSR   V  IF++AAE++GFKFV+ KS   SEGR  LR
Sbjct: 468 VVFFEWVSKRSTHANLQAVPIPSSRAHVVQNIFDMAAEKLGFKFVISKSDAPSEGRKSLR 527

Query: 181 TQFDRKCSLFYVELPGGTILSHAIEESEKFPAQFGREVLAGLLNMADRADWRNCKLSKGE 360
           TQFD   S FY ELP    LSH IEE+E FPAQFGREVLAGLLNMAD+ADWRNC  SK E
Sbjct: 528 TQFDSDHSFFYAELPECVTLSHVIEENEIFPAQFGREVLAGLLNMADKADWRNCAHSKEE 587

Query: 361 EIKMAENFKNGFEKFDPNR 417
           E KMAE+FK  FE FDPN+
Sbjct: 588 ETKMAEDFKIRFENFDPNK 606


>ref|XP_002514115.1| nucleic acid binding protein, putative [Ricinus communis]
           gi|223546571|gb|EEF48069.1| nucleic acid binding
           protein, putative [Ricinus communis]
          Length = 606

 Score =  185 bits (470), Expect = 5e-45
 Identities = 86/136 (63%), Positives = 107/136 (78%)
 Frame = +1

Query: 4   VFFEWVYIRATHANLQAIPIPSSRESSVLEIFNLAAERMGFKFVVLKSGISSEGRNLLRT 183
           + FEW   R THANLQA+P+PSSR ++V +IFN+AAE++GFKFV +K   +S+GR  LRT
Sbjct: 469 ILFEWASKRGTHANLQAVPVPSSRAAAVQDIFNMAAEKLGFKFVTMKFNNNSDGRKWLRT 528

Query: 184 QFDRKCSLFYVELPGGTILSHAIEESEKFPAQFGREVLAGLLNMADRADWRNCKLSKGEE 363
           QFDR  S FYVELP GT+LSH+++E+E FPAQFGREVLAGLLNM +RADWR C LSK EE
Sbjct: 529 QFDRNYSFFYVELPDGTVLSHSVKENESFPAQFGREVLAGLLNMPERADWRTCTLSKEEE 588

Query: 364 IKMAENFKNGFEKFDP 411
            KM +  K  FE+ +P
Sbjct: 589 TKMIDELKKQFEELNP 604


>ref|XP_002332828.1| predicted protein [Populus trichocarpa] gi|222833259|gb|EEE71736.1|
           predicted protein [Populus trichocarpa]
          Length = 606

 Score =  185 bits (470), Expect = 5e-45
 Identities = 89/142 (62%), Positives = 112/142 (78%), Gaps = 4/142 (2%)
 Frame = +1

Query: 4   VFFEWVYIRATHANLQAIPIPSSRESSVLEIFNLAAERMGFKFVVLKSGI----SSEGRN 171
           + FEW+  R++HAN+Q +P+PS++ ++V +I NLAAE++GFKFVV+K  +    SS+GR 
Sbjct: 465 ILFEWISKRSSHANIQVVPVPSTKAAAVQDICNLAAEKLGFKFVVMKFILAVNNSSDGRE 524

Query: 172 LLRTQFDRKCSLFYVELPGGTILSHAIEESEKFPAQFGREVLAGLLNMADRADWRNCKLS 351
            LRTQFDR  S FYVEL  GTILSH++EE+E FPAQFGREVLAGLLNM +RADWRNC L 
Sbjct: 525 WLRTQFDRNYSFFYVELTEGTILSHSVEENENFPAQFGREVLAGLLNMPERADWRNCALG 584

Query: 352 KGEEIKMAENFKNGFEKFDPNR 417
           K EE KMAE FK  FE+ DPN+
Sbjct: 585 KDEETKMAEEFKKQFEELDPNQ 606


Top