BLASTX nr result

ID: Panax21_contig00004627 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00004627
         (673 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002271178.1| PREDICTED: recQ-mediated genome instability ...    86   2e-32
ref|XP_002328082.1| predicted protein [Populus trichocarpa] gi|1...    84   6e-32
ref|XP_002889690.1| hypothetical protein ARALYDRAFT_470900 [Arab...    76   5e-28
dbj|BAF36320.1| hypothetical protein [Ipomoea trifida]                 74   2e-26
ref|NP_172315.1| uncharacterized protein [Arabidopsis thaliana] ...    72   8e-26

>ref|XP_002271178.1| PREDICTED: recQ-mediated genome instability protein 2 [Vitis
           vinifera] gi|297734866|emb|CBI17100.3| unnamed protein
           product [Vitis vinifera]
          Length = 134

 Score = 85.5 bits (210), Expect(2) = 2e-32
 Identities = 46/81 (56%), Positives = 58/81 (71%)
 Frame = -1

Query: 622 MDYSLAALKVLCVQLKAARQTNSQSAMTLGGILFQRAWLQGILVSSPTSXXXXXXXXXXX 443
           MDYSLAALKV+C QL+ A++T SQ+A TLGG+LFQRAWLQG+LVS   S           
Sbjct: 1   MDYSLAALKVMCGQLRKAKETTSQNAFTLGGVLFQRAWLQGVLVS--VSDDAQGRFVLDD 58

Query: 442 XXGMIELTLSGDFRNREFEIG 380
             G+I L+LSGDF +R ++IG
Sbjct: 59  GTGVIHLSLSGDFLHRNWKIG 79



 Score = 80.1 bits (196), Expect(2) = 2e-32
 Identities = 38/62 (61%), Positives = 48/62 (77%)
 Frame = -3

Query: 308 NREFEIXXXXXXXXXYFVRTDDFPMIKVHKIVDLSPYPDREAMWYLEVLEAYKLFYGPLL 129
           +R ++I         YFVR+ + PMIKVHKIVDLSP+PDRE+MWYLEV+EA++LFY PL 
Sbjct: 73  HRNWKIGMYVMVVGGYFVRSGEPPMIKVHKIVDLSPFPDRESMWYLEVIEAFRLFYQPLY 132

Query: 128 EE 123
           EE
Sbjct: 133 EE 134


>ref|XP_002328082.1| predicted protein [Populus trichocarpa] gi|118483555|gb|ABK93675.1|
           unknown [Populus trichocarpa]
           gi|222837597|gb|EEE75962.1| predicted protein [Populus
           trichocarpa]
          Length = 134

 Score = 84.0 bits (206), Expect(2) = 6e-32
 Identities = 49/81 (60%), Positives = 57/81 (70%)
 Frame = -1

Query: 622 MDYSLAALKVLCVQLKAARQTNSQSAMTLGGILFQRAWLQGILVSSPTSXXXXXXXXXXX 443
           MDYSLAALK+LCVQLK A +T SQ+A+TLGGILFQRAWLQGILVS+              
Sbjct: 1   MDYSLAALKLLCVQLKDASETPSQNALTLGGILFQRAWLQGILVSN----DGDGRLLLDD 56

Query: 442 XXGMIELTLSGDFRNREFEIG 380
             G+IEL LS DFR R ++ G
Sbjct: 57  GTGVIELCLSPDFRLRHWDSG 77



 Score = 79.7 bits (195), Expect(2) = 6e-32
 Identities = 36/46 (78%), Positives = 41/46 (89%)
 Frame = -3

Query: 260 FVRTDDFPMIKVHKIVDLSPYPDREAMWYLEVLEAYKLFYGPLLEE 123
           FVR  + PMIKVHK+VDLS +PDREAMWYLEV+EAYKLFY PL+EE
Sbjct: 87  FVRHGETPMIKVHKMVDLSAFPDREAMWYLEVMEAYKLFYQPLIEE 132


>ref|XP_002889690.1| hypothetical protein ARALYDRAFT_470900 [Arabidopsis lyrata subsp.
           lyrata] gi|297335532|gb|EFH65949.1| hypothetical protein
           ARALYDRAFT_470900 [Arabidopsis lyrata subsp. lyrata]
          Length = 136

 Score = 76.3 bits (186), Expect(2) = 5e-28
 Identities = 42/81 (51%), Positives = 54/81 (66%)
 Frame = -1

Query: 622 MDYSLAALKVLCVQLKAARQTNSQSAMTLGGILFQRAWLQGILVSSPTSXXXXXXXXXXX 443
           MDYSLAA+K+LC QL+ A+ T SQ+A  LGG+LFQRAWLQG+LV  P S           
Sbjct: 1   MDYSLAAVKMLCSQLRDAKPTPSQNATALGGVLFQRAWLQGVLV--PISGGGDNHMVLDD 58

Query: 442 XXGMIELTLSGDFRNREFEIG 380
             G++EL LS DF  R+++ G
Sbjct: 59  GTGLVELGLSSDFALRQWKSG 79



 Score = 74.3 bits (181), Expect(2) = 5e-28
 Identities = 31/45 (68%), Positives = 40/45 (88%)
 Frame = -3

Query: 257 VRTDDFPMIKVHKIVDLSPYPDREAMWYLEVLEAYKLFYGPLLEE 123
           +RT D P++KVHK+VDLS  PDREAMWYLEV++AY+LFY PL++E
Sbjct: 90  IRTGDIPLLKVHKMVDLSVSPDREAMWYLEVMDAYRLFYEPLIQE 134


>dbj|BAF36320.1| hypothetical protein [Ipomoea trifida]
          Length = 143

 Score = 73.6 bits (179), Expect(2) = 2e-26
 Identities = 42/84 (50%), Positives = 54/84 (64%), Gaps = 3/84 (3%)
 Frame = -1

Query: 622 MDYSLAALKVLCVQLKAARQ--TNSQSAMTLGGILFQRAWLQGILVSSPTSXXXXXXXXX 449
           MDYSL ALK+LC  L  A +  ++SQ A +LGGILFQR WLQG+LVS P+          
Sbjct: 1   MDYSLGALKILCSHLTTATEATSHSQPAFSLGGILFQRVWLQGVLVSKPSPSNDAGRFLL 60

Query: 448 XXXXGMIELTLSGDF-RNREFEIG 380
               G+IEL LSGD+ +N  +E+G
Sbjct: 61  DDGTGVIELKLSGDYLQNDAWELG 84



 Score = 72.0 bits (175), Expect(2) = 2e-26
 Identities = 33/45 (73%), Positives = 38/45 (84%)
 Frame = -3

Query: 257 VRTDDFPMIKVHKIVDLSPYPDREAMWYLEVLEAYKLFYGPLLEE 123
           VR +    IKVHKIVDLSP PDREAMWYLEV+EA++LFY PL+EE
Sbjct: 95  VRKNGTSFIKVHKIVDLSPVPDREAMWYLEVVEAFRLFYQPLIEE 139


>ref|NP_172315.1| uncharacterized protein [Arabidopsis thaliana]
           gi|20258784|gb|AAM13914.1| unknown protein [Arabidopsis
           thaliana] gi|332190163|gb|AEE28284.1| uncharacterized
           protein [Arabidopsis thaliana]
          Length = 137

 Score = 72.4 bits (176), Expect(2) = 8e-26
 Identities = 31/45 (68%), Positives = 39/45 (86%)
 Frame = -3

Query: 257 VRTDDFPMIKVHKIVDLSPYPDREAMWYLEVLEAYKLFYGPLLEE 123
           VRT   P++KVHK+VDLS  PDREAMWYLEV++AY+LFY PL++E
Sbjct: 91  VRTGQIPLLKVHKMVDLSVSPDREAMWYLEVMDAYRLFYEPLIQE 135



 Score = 70.9 bits (172), Expect(2) = 8e-26
 Identities = 39/81 (48%), Positives = 54/81 (66%)
 Frame = -1

Query: 622 MDYSLAALKVLCVQLKAARQTNSQSAMTLGGILFQRAWLQGILVSSPTSXXXXXXXXXXX 443
           MDYSLAA+K+LC QL+ A+ T SQ+A +LGG+LFQRAWLQG+LV   +            
Sbjct: 1   MDYSLAAVKMLCSQLRDAKPTPSQNAASLGGVLFQRAWLQGVLVPF-SGGGGDNCLVLDD 59

Query: 442 XXGMIELTLSGDFRNREFEIG 380
             G++EL L+ DF  R+++ G
Sbjct: 60  GTGLLELGLTNDFALRQWKSG 80


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