BLASTX nr result
ID: Panax21_contig00004561
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax21_contig00004561
(610 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002300344.1| predicted protein [Populus trichocarpa] gi|2... 353 1e-95
dbj|BAG31377.1| topoisomerase I [Catharanthus roseus] 351 5e-95
ref|XP_002266885.1| PREDICTED: DNA topoisomerase 1 [Vitis vinife... 350 9e-95
dbj|BAK32962.1| topoisomerase I [Ophiorrhiza trichocarpon var. g... 348 3e-94
dbj|BAK32958.1| topoisomerase I [Ophiorrhiza pedunculata] 348 3e-94
>ref|XP_002300344.1| predicted protein [Populus trichocarpa] gi|222847602|gb|EEE85149.1|
predicted protein [Populus trichocarpa]
Length = 877
Score = 353 bits (906), Expect = 1e-95
Identities = 160/203 (78%), Positives = 179/203 (88%)
Frame = +1
Query: 1 GVKMLYKGQPVDLTPEQEEVATMIAVMLDTDYYKKPKFRENFMSDWKKILGKNHIIQNFN 180
GVK+LYKG+P+DLTPEQEEVATM AVM DTDY +KP+FR+NF +DW+K+LGKNH+IQ +
Sbjct: 353 GVKILYKGKPIDLTPEQEEVATMFAVMKDTDYVQKPQFRQNFWNDWRKLLGKNHVIQKLD 412
Query: 181 DCNFQPIYEWHQREKEKKKQMSTXXXXXXXXXXXXXXXXYMWAVVDGVKEKVGNFRVEPP 360
DC+F PIYEWHQ+EKEKKKQMST YMWA+V+GVKEKVGNFRVEPP
Sbjct: 413 DCDFNPIYEWHQQEKEKKKQMSTEEKKVLKEEKLKQEEKYMWAIVNGVKEKVGNFRVEPP 472
Query: 361 GLFRGRGEHPKMGKLKKRIRPSDITINIGRDAPVPECPIPGERWKEIRHDNTVTWLAFWN 540
GLFRGRGEHPKMGKLK RIRPSDITINIG+DAP+PECPIPGERWKE++HDNTVTWLAFWN
Sbjct: 473 GLFRGRGEHPKMGKLKSRIRPSDITINIGKDAPIPECPIPGERWKEVKHDNTVTWLAFWN 532
Query: 541 DPINPKEFKYVFLAASSSLKGQS 609
DPINPKEFKYVFLAASSSLKGQS
Sbjct: 533 DPINPKEFKYVFLAASSSLKGQS 555
>dbj|BAG31377.1| topoisomerase I [Catharanthus roseus]
Length = 910
Score = 351 bits (901), Expect = 5e-95
Identities = 161/203 (79%), Positives = 174/203 (85%)
Frame = +1
Query: 1 GVKMLYKGQPVDLTPEQEEVATMIAVMLDTDYYKKPKFRENFMSDWKKILGKNHIIQNFN 180
G+KMLYKG+PVDLTPEQEEVATM AVMLDTDY KP+F+ENF DWKKILGKNH+IQN
Sbjct: 384 GIKMLYKGKPVDLTPEQEEVATMFAVMLDTDYMNKPRFKENFFGDWKKILGKNHVIQNLE 443
Query: 181 DCNFQPIYEWHQREKEKKKQMSTXXXXXXXXXXXXXXXXYMWAVVDGVKEKVGNFRVEPP 360
+C+F PIYEWHQ EKEKKKQM+T YMWA VDG KEKVGNFRVEPP
Sbjct: 444 NCDFSPIYEWHQSEKEKKKQMTTEEKKALKEEKLKQEEKYMWAWVDGKKEKVGNFRVEPP 503
Query: 361 GLFRGRGEHPKMGKLKKRIRPSDITINIGRDAPVPECPIPGERWKEIRHDNTVTWLAFWN 540
GLFRGRGEHPKMGKLKKRIRP DITINIG+DAP+PECP+PGERWKE+RHDNTVTWLAFWN
Sbjct: 504 GLFRGRGEHPKMGKLKKRIRPCDITINIGKDAPIPECPVPGERWKEVRHDNTVTWLAFWN 563
Query: 541 DPINPKEFKYVFLAASSSLKGQS 609
DPINPKEFKYVFLAASS+LKG S
Sbjct: 564 DPINPKEFKYVFLAASSTLKGLS 586
>ref|XP_002266885.1| PREDICTED: DNA topoisomerase 1 [Vitis vinifera]
gi|296082698|emb|CBI21703.3| unnamed protein product
[Vitis vinifera]
Length = 857
Score = 350 bits (899), Expect = 9e-95
Identities = 161/203 (79%), Positives = 177/203 (87%)
Frame = +1
Query: 1 GVKMLYKGQPVDLTPEQEEVATMIAVMLDTDYYKKPKFRENFMSDWKKILGKNHIIQNFN 180
GVKMLYKG+PVDLTPEQEEVATM AVMLDTDY +K KF+ENFM+DW+KILGKNH+IQ +
Sbjct: 334 GVKMLYKGKPVDLTPEQEEVATMFAVMLDTDYMQKEKFKENFMADWRKILGKNHVIQRLD 393
Query: 181 DCNFQPIYEWHQREKEKKKQMSTXXXXXXXXXXXXXXXXYMWAVVDGVKEKVGNFRVEPP 360
DC+F PIYEWHQ EKEKKKQMST YMWA+VDGVKEKVGNFRVEPP
Sbjct: 394 DCDFTPIYEWHQEEKEKKKQMSTEEKKTLKEEKLKLEEKYMWAIVDGVKEKVGNFRVEPP 453
Query: 361 GLFRGRGEHPKMGKLKKRIRPSDITINIGRDAPVPECPIPGERWKEIRHDNTVTWLAFWN 540
GLFRGRGEHPKMGKLK+RI PSDITINIG+++ +PECPIPGE WKE++HDNTVTWLAFWN
Sbjct: 454 GLFRGRGEHPKMGKLKRRIHPSDITINIGKNSQIPECPIPGESWKEVKHDNTVTWLAFWN 513
Query: 541 DPINPKEFKYVFLAASSSLKGQS 609
DPINPKEFKYVFLAASSSLKGQS
Sbjct: 514 DPINPKEFKYVFLAASSSLKGQS 536
>dbj|BAK32962.1| topoisomerase I [Ophiorrhiza trichocarpon var. glabra]
Length = 920
Score = 348 bits (894), Expect = 3e-94
Identities = 161/203 (79%), Positives = 175/203 (86%)
Frame = +1
Query: 1 GVKMLYKGQPVDLTPEQEEVATMIAVMLDTDYYKKPKFRENFMSDWKKILGKNHIIQNFN 180
GVKMLYK QP+ LTPEQEEVATM AVMLDTDY KP+F+ENF SDWKK+LGKNH IQN
Sbjct: 401 GVKMLYKRQPITLTPEQEEVATMFAVMLDTDYMNKPRFKENFFSDWKKMLGKNHTIQNLE 460
Query: 181 DCNFQPIYEWHQREKEKKKQMSTXXXXXXXXXXXXXXXXYMWAVVDGVKEKVGNFRVEPP 360
DC+F PIYEWHQ+EKEKKKQM+T YMWA+VDGVKEKVGNFRVEPP
Sbjct: 461 DCDFGPIYEWHQQEKEKKKQMTTEEKKALKEEKLQQEEKYMWAIVDGVKEKVGNFRVEPP 520
Query: 361 GLFRGRGEHPKMGKLKKRIRPSDITINIGRDAPVPECPIPGERWKEIRHDNTVTWLAFWN 540
GLFRGRGEHPKMGKLKKRIRP DITINIG+DAP+PECPIPGERWKE+R+DNTVTWLA+WN
Sbjct: 521 GLFRGRGEHPKMGKLKKRIRPRDITINIGKDAPIPECPIPGERWKEVRNDNTVTWLAYWN 580
Query: 541 DPINPKEFKYVFLAASSSLKGQS 609
DPIN KEFKYVFLAASS+LKGQS
Sbjct: 581 DPINQKEFKYVFLAASSTLKGQS 603
>dbj|BAK32958.1| topoisomerase I [Ophiorrhiza pedunculata]
Length = 920
Score = 348 bits (894), Expect = 3e-94
Identities = 161/203 (79%), Positives = 175/203 (86%)
Frame = +1
Query: 1 GVKMLYKGQPVDLTPEQEEVATMIAVMLDTDYYKKPKFRENFMSDWKKILGKNHIIQNFN 180
GVKMLYK QP+ LTPEQEEVATM AVMLDTDY KP+F+ENF SDWKK+LGKNH IQN
Sbjct: 401 GVKMLYKRQPITLTPEQEEVATMFAVMLDTDYMNKPRFKENFFSDWKKMLGKNHTIQNLE 460
Query: 181 DCNFQPIYEWHQREKEKKKQMSTXXXXXXXXXXXXXXXXYMWAVVDGVKEKVGNFRVEPP 360
DC+F PIYEWHQ+EKEKKKQM+T YMWA+VDGVKEKVGNFRVEPP
Sbjct: 461 DCDFGPIYEWHQQEKEKKKQMTTEEKKALKEEKLQQEEKYMWAIVDGVKEKVGNFRVEPP 520
Query: 361 GLFRGRGEHPKMGKLKKRIRPSDITINIGRDAPVPECPIPGERWKEIRHDNTVTWLAFWN 540
GLFRGRGEHPKMGKLKKRIRP DITINIG+DAP+PECPIPGERWKE+R+DNTVTWLA+WN
Sbjct: 521 GLFRGRGEHPKMGKLKKRIRPRDITINIGKDAPIPECPIPGERWKEVRNDNTVTWLAYWN 580
Query: 541 DPINPKEFKYVFLAASSSLKGQS 609
DPIN KEFKYVFLAASS+LKGQS
Sbjct: 581 DPINQKEFKYVFLAASSTLKGQS 603