BLASTX nr result

ID: Panax21_contig00004502 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00004502
         (766 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001048592.1| Os02g0827300 [Oryza sativa Japonica Group] g...    58   2e-06
ref|XP_003573003.1| PREDICTED: splicing factor 3B subunit 2-like...    58   2e-06
dbj|BAJ93118.1| predicted protein [Hordeum vulgare subsp. vulgare]     58   2e-06
dbj|BAJ91146.1| predicted protein [Hordeum vulgare subsp. vulgare]     58   2e-06
ref|XP_002519025.1| Splicing factor 3B subunit, putative [Ricinu...    58   2e-06

>ref|NP_001048592.1| Os02g0827300 [Oryza sativa Japonica Group]
           gi|48716448|dbj|BAD23055.1| putative splicing factor 3B
           subunit 2 [Oryza sativa Japonica Group]
           gi|113538123|dbj|BAF10506.1| Os02g0827300 [Oryza sativa
           Japonica Group] gi|125584232|gb|EAZ25163.1| hypothetical
           protein OsJ_08964 [Oryza sativa Japonica Group]
          Length = 582

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 25/29 (86%), Positives = 27/29 (93%)
 Frame = +1

Query: 295 VLHDAFFKYQTKPKLISHGDLYNDGKEYE 381
           VLHDAFFKYQTKPKL SHGDLY +GKE+E
Sbjct: 270 VLHDAFFKYQTKPKLTSHGDLYYEGKEFE 298


>ref|XP_003573003.1| PREDICTED: splicing factor 3B subunit 2-like, partial [Brachypodium
           distachyon]
          Length = 576

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 25/29 (86%), Positives = 27/29 (93%)
 Frame = +1

Query: 295 VLHDAFFKYQTKPKLISHGDLYNDGKEYE 381
           VLHDAFFKYQTKPKL SHGDLY +GKE+E
Sbjct: 264 VLHDAFFKYQTKPKLTSHGDLYYEGKEFE 292


>dbj|BAJ93118.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 435

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 25/29 (86%), Positives = 27/29 (93%)
 Frame = +1

Query: 295 VLHDAFFKYQTKPKLISHGDLYNDGKEYE 381
           VLHDAFFKYQTKPKL SHGDLY +GKE+E
Sbjct: 122 VLHDAFFKYQTKPKLTSHGDLYYEGKEFE 150


>dbj|BAJ91146.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 581

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 25/29 (86%), Positives = 27/29 (93%)
 Frame = +1

Query: 295 VLHDAFFKYQTKPKLISHGDLYNDGKEYE 381
           VLHDAFFKYQTKPKL SHGDLY +GKE+E
Sbjct: 268 VLHDAFFKYQTKPKLTSHGDLYYEGKEFE 296


>ref|XP_002519025.1| Splicing factor 3B subunit, putative [Ricinus communis]
           gi|223541688|gb|EEF43236.1| Splicing factor 3B subunit,
           putative [Ricinus communis]
          Length = 590

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 24/29 (82%), Positives = 28/29 (96%)
 Frame = +1

Query: 295 VLHDAFFKYQTKPKLISHGDLYNDGKEYE 381
           VLHDAFFKYQTKPKL +HGDLY++GKE+E
Sbjct: 283 VLHDAFFKYQTKPKLTTHGDLYHEGKEFE 311


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