BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00004487
         (1223 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAG31376.1| topoisomerase I [Camptotheca acuminata]               229   1e-57
emb|CAB46363.1| DNA topoisomerase I [Daucus carota]                   226   1e-56
dbj|BAG31377.1| topoisomerase I [Catharanthus roseus]                 197   5e-48
dbj|BAG31374.1| topoisomerase I [Ophiorrhiza liukiuensis]             184   3e-44
dbj|BAK32958.1| topoisomerase I [Ophiorrhiza pedunculata]             181   4e-43

>dbj|BAG31376.1| topoisomerase I [Camptotheca acuminata]
          Length = 894

 Score =  229 bits (583), Expect = 1e-57
 Identities = 156/324 (48%), Positives = 188/324 (58%), Gaps = 4/324 (1%)
 Frame = -1

Query: 962 MAVQVGAKPEMMNTSDDEDDMPLVFKRS-AASKQNQLNPEVKKSLSQKHDGKSGRQMSDV 786
           MAVQ   K +MM+  D EDD PLVFKRS A SK NQLN + KKS SQ++DG+SGRQ+SDV
Sbjct: 1   MAVQACVKEKMMDEID-EDDEPLVFKRSNATSKHNQLNSDTKKS-SQRYDGQSGRQVSDV 58

Query: 785 RSPNGQSSTVQKGKTVLSTKGXXXXXXXXXXXXXXXXXXXXXXXXXVENTKASTSAADQS 606
            S NGQSS+  KGKT   +                           V N K S+S+ D+S
Sbjct: 59  PSTNGQSSSASKGKTTKLSS-------MKSPIASPKASTSFAKASPVANPKVSSSSDDRS 111

Query: 605 KINSQQTKTTIVKVEKSLGKPXXXXXXXXXXXXXDKPLSFRLSAGASKGSS-NVNKGPDS 429
           K +S+Q    +VK EK L  P             +KPLS RL  G +KGSS N NKG  +
Sbjct: 112 KHSSKQNTINVVKEEKELVNP---AAEPYGDSEDEKPLSARLFTGLTKGSSNNANKGLIN 168

Query: 428 SGFVSSALPKPRVK--EEDSEDEKPLSMKFQLKTNVGTSISNSYDSGENKPIASRLQLNG 255
           S   S  +PKP +    +DS+DE PLS KF+LK N GTS   SY+S +NK + S  Q NG
Sbjct: 169 SSPASLPVPKPEINRYSDDSDDEIPLSSKFRLKANAGTSTVKSYESDDNKTLVSNFQQNG 228

Query: 254 SGIRGNQVMKSSIALNKRPSAEAKSSGQYSVKKAKLSDAPASSNSKQVNVKTELMTKDDV 75
           S  RG+   KSSI +NKRP  E KSS Q SVKK KLSDA    N+KQ + K E    D  
Sbjct: 229 SINRGS---KSSIKVNKRPLGEVKSSVQSSVKKPKLSDASTPVNNKQASKKAEPKADDSD 285

Query: 74  DDHVPISQRIKKLATPVSKLSDKK 3
           DDHVPISQR+KK AT  +K S  K
Sbjct: 286 DDHVPISQRMKKSATSGNKSSTAK 309


>emb|CAB46363.1| DNA topoisomerase I [Daucus carota]
          Length = 909

 Score =  226 bits (575), Expect = 1e-56
 Identities = 149/313 (47%), Positives = 180/313 (57%), Gaps = 3/313 (0%)
 Frame = -1

Query: 932 MMNTSDDEDDMPLVFKRSAAS-KQNQLNPEVKKSLSQKHDGKSGRQMSDVRSPNGQSSTV 756
           M + SD EDD PL+FKRS  S KQNQ  P  +K +S +   + GR +SDVRS NG  S V
Sbjct: 1   MEHGSDSEDDKPLIFKRSNTSVKQNQAKPRCQKIISAEAVWQVGRLISDVRSTNGHDSNV 60

Query: 755 QKGKTVLSTKGXXXXXXXXXXXXXXXXXXXXXXXXXVENTKASTSAADQSKINSQQTKTT 576
           QKGKTV STKG                         V +TKASTS ADQS+ NSQQ +T 
Sbjct: 61  QKGKTVPSTKGSPVVSPLASPKASVSSSKASQVKPPVASTKASTSGADQSRQNSQQNRTA 120

Query: 575 IVKVEKSLGKPXXXXXXXXXXXXXDKPLSFRLSAGASKGS-SNVNKGPDSSGFVSSALPK 399
           IVK E+  G P             DKPL+ RL  G SKGS S VN+ P SSG   +A  K
Sbjct: 121 IVKAERPSGIPKEEPDSGSEDSDDDKPLNSRLPVGGSKGSISEVNRRPSSSG--PAAFEK 178

Query: 398 P-RVKEEDSEDEKPLSMKFQLKTNVGTSISNSYDSGENKPIASRLQLNGSGIRGNQVMKS 222
              +KEEDSED+ PLS KF+ K+N G S SN+YDS E KP AS+ + NG+ ++ N V   
Sbjct: 179 DLGIKEEDSEDDIPLSHKFKQKSNAGES-SNAYDSDEGKPFASKPRQNGTNVKDN-VKNP 236

Query: 221 SIALNKRPSAEAKSSGQYSVKKAKLSDAPASSNSKQVNVKTELMTKDDVDDHVPISQRIK 42
           S A+NKRPSAE K SGQ  VKKA +           V  + +    D  DD+  ISQR+K
Sbjct: 237 STAINKRPSAEVKCSGQSPVKKATVQLHLHQVRKLTVKAEPKKEADDSDDDNATISQRVK 296

Query: 41  KLATPVSKLSDKK 3
           K ATP+SK SDKK
Sbjct: 297 KPATPISKASDKK 309


>dbj|BAG31377.1| topoisomerase I [Catharanthus roseus]
          Length = 910

 Score =  197 bits (501), Expect = 5e-48
 Identities = 140/336 (41%), Positives = 179/336 (53%), Gaps = 16/336 (4%)
 Frame = -1

Query: 962 MAVQVGAKPEMMNTSDDEDDMPLVFKRS-AASKQNQLNPEVKKSLSQKHDGKSGRQMSDV 786
           MAV+    P + +  D EDD P+VFKR+ +ASKQ+Q N E +K  SQK DG+S RQ+ D 
Sbjct: 1   MAVEACPTPNLRDDMD-EDDEPIVFKRNNSASKQSQTNSETRKVSSQKRDGQSVRQIYDS 59

Query: 785 RSPNGQSSTVQKGKTV-----------LS---TKGXXXXXXXXXXXXXXXXXXXXXXXXX 648
           R  NG+SS+ QKG+ V           LS   +K                          
Sbjct: 60  RPANGESSSGQKGRMVPPSKPSQVKSPLSSPPSKPSQVKSPLSSPKVSTSSAKKSPVSSL 119

Query: 647 VENTKASTSAADQSKINSQQTKTTIVKVEKSLG-KPXXXXXXXXXXXXXDKPLSFRLSAG 471
             N+K STS + + K  +Q    T++K EKS   +               KPLS R SA 
Sbjct: 120 PANSKPSTSGSFKVKPFNQHKSATVIKEEKSSPLRLASAIINDSEDSDDGKPLSLRHSAS 179

Query: 470 ASKGSSNVNKGPDSSGFVSSALPKPRVKEEDSEDEKPLSMKFQLKTNVGTSISNSYDSGE 291
           +SKG++N          VS    KP  + EDS+DEKPLS +F LK+ VG S S +YDS +
Sbjct: 180 SSKGNTNQ---------VSKEGSKP--ENEDSDDEKPLSSRFPLKSGVGESTSKAYDSDD 228

Query: 290 NKPIASRLQLNGSGIRGNQVMKSSIALNKRPSAEAKSSGQYSVKKAKLSDAPASSNSKQV 111
           +KP+A +LQ NGS +R  Q  K S   NKRP  + KSS Q SVKK KLS   A +N KQ 
Sbjct: 229 DKPLAKKLQHNGSAMRDGQPNKYSNMSNKRPPGDIKSSNQLSVKKPKLSSVTAPTNKKQA 288

Query: 110 NVKTELMTKDDVDDHVPISQRIKKLATPVSKLSDKK 3
           +VK E   +DD DDH+PISQRIKK  T  SK S  K
Sbjct: 289 SVKPEPKAEDDDDDHLPISQRIKKSPTSESKSSSIK 324


>dbj|BAG31374.1| topoisomerase I [Ophiorrhiza liukiuensis]
          Length = 926

 Score =  184 bits (468), Expect = 3e-44
 Identities = 127/321 (39%), Positives = 170/321 (52%), Gaps = 2/321 (0%)
 Frame = -1

Query: 962 MAVQVGAKPEMMNTSDDEDDMPLVFKRS-AASKQNQLNPEVKKSLSQKHDGKSGRQMSDV 786
           MAV+    P +M   +D D+ P++FKRS  ASKQNQ N E KK   QKH G+S    SDV
Sbjct: 1   MAVEACTTPNLMEDMED-DEGPVIFKRSNPASKQNQANSEKKKLSLQKHVGQSAVHTSDV 59

Query: 785 RSPNGQSSTVQKGKTVLSTKGXXXXXXXXXXXXXXXXXXXXXXXXXVENTKASTSAADQS 606
           R  NG+SS+ QKG+   S +                            N+K S SA   +
Sbjct: 60  RPANGESSSAQKGRIQPSAETPPVKSPLSSPKASNSSAKASPITSPGANSKLSASATSTA 119

Query: 605 KINSQQTKTTIVKVEKSLGKPXXXXXXXXXXXXXDKPLSFRLSAGASKGSSNVNKGPDSS 426
           K  +   K++   +E     P             +KPL  R S  +SKG SN     +  
Sbjct: 120 KQQNHH-KSSAAFIEPKPSVPAAKANSNSESSDDEKPLIARTSGCSSKGKSN---HANKE 175

Query: 425 GFVSSALPKPRVKE-EDSEDEKPLSMKFQLKTNVGTSISNSYDSGENKPIASRLQLNGSG 249
           G  S ++ +P ++E EDSEDEKPLS +F  K+++G S S SYDS E KP+A+++Q NGS 
Sbjct: 176 GGDSCSIRRPVIEESEDSEDEKPLSRRFPSKSSLGESTSKSYDSDEKKPLATKVQQNGSA 235

Query: 248 IRGNQVMKSSIALNKRPSAEAKSSGQYSVKKAKLSDAPASSNSKQVNVKTELMTKDDVDD 69
            R   + KS+  LNKR   E KS  Q S+KKAKLS    S ++KQ  VK E   +DD DD
Sbjct: 236 SRDGPMNKSASLLNKRAPGEVKSLNQSSLKKAKLSSPITSISNKQAAVKPEPKAEDD-DD 294

Query: 68  HVPISQRIKKLATPVSKLSDK 6
           ++P+SQR KK  T  SK  D+
Sbjct: 295 NIPLSQRGKKSQTAASKPKDE 315


>dbj|BAK32958.1| topoisomerase I [Ophiorrhiza pedunculata]
          Length = 920

 Score =  181 bits (458), Expect = 4e-43
 Identities = 125/321 (38%), Positives = 169/321 (52%), Gaps = 2/321 (0%)
 Frame = -1

Query: 962 MAVQVGAKPEMMNTSDDEDDMPLVFKRS-AASKQNQLNPEVKKSLSQKHDGKSGRQMSDV 786
           MAV+      +M   +D D+ P++FKRS  ASKQNQ N E KK   QKH G+S    SDV
Sbjct: 1   MAVEACTTTNLMEDMED-DEGPVIFKRSNPASKQNQANSEKKKLSLQKHVGQSAVHTSDV 59

Query: 785 RSPNGQSSTVQKGKTVLSTKGXXXXXXXXXXXXXXXXXXXXXXXXXVENTKASTSAADQS 606
           R  NG++S+ QKG+   S K                            N+K S SA   +
Sbjct: 60  RPANGENSSAQKGRIQPSAKTPPVKSPLSSPKASNSSAKASPITSPGANSKPSASATSTA 119

Query: 605 KINSQQTKTTIVKVEKSLGKPXXXXXXXXXXXXXDKPLSFRLSAGASKGSSNVNKGPDSS 426
           K  +   K++   +E     P             +KPLS R    +SKG SN     +  
Sbjct: 120 KQQNHH-KSSAAFIEPKPSVPAAKANSNSESSDDEKPLSARTFGCSSKGKSN---HANKE 175

Query: 425 GFVSSALPKPRVKE-EDSEDEKPLSMKFQLKTNVGTSISNSYDSGENKPIASRLQLNGSG 249
           G  S ++ +P ++E EDSEDEKPLS +F  K+++G S S SYDS E KP+A+++Q NGS 
Sbjct: 176 GGDSCSIRRPVIEESEDSEDEKPLSRRFTSKSSLGESTSKSYDSDEKKPLAAKVQPNGSA 235

Query: 248 IRGNQVMKSSIALNKRPSAEAKSSGQYSVKKAKLSDAPASSNSKQVNVKTELMTKDDVDD 69
            R + + KS+   NKRP  E KS  Q S+KK KLS    S ++KQ  VK E   +DD DD
Sbjct: 236 SRDSPMNKSASLSNKRPPGEVKSLNQSSLKKPKLSSPITSISNKQAAVKPEPKAEDD-DD 294

Query: 68  HVPISQRIKKLATPVSKLSDK 6
           ++P+SQR KK  T  SK  D+
Sbjct: 295 NIPLSQRGKKSQTATSKPKDE 315