BLASTX nr result

ID: Panax21_contig00004448 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00004448
         (461 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002315781.1| predicted protein [Populus trichocarpa] gi|2...   112   2e-23
ref|XP_002311616.1| predicted protein [Populus trichocarpa] gi|2...   112   4e-23
ref|XP_002277982.2| PREDICTED: protein TIME FOR COFFEE-like [Vit...   107   1e-21
ref|XP_004170713.1| PREDICTED: protein TIME FOR COFFEE-like, par...    95   5e-18
ref|XP_004140148.1| PREDICTED: protein TIME FOR COFFEE-like [Cuc...    95   5e-18

>ref|XP_002315781.1| predicted protein [Populus trichocarpa] gi|222864821|gb|EEF01952.1|
           predicted protein [Populus trichocarpa]
          Length = 373

 Score =  112 bits (281), Expect = 2e-23
 Identities = 59/100 (59%), Positives = 67/100 (67%)
 Frame = +3

Query: 105 GTTVSSSTGMLSLCTPVTLSSTSTTDPXXXXXXXXXXXXXXXSNMKGGGLSSQGTLHAAQ 284
           GT+ +SSTGMLSLC PVTL+ TS+TDP               +NMKGGGL SQG +HA  
Sbjct: 284 GTSATSSTGMLSLCPPVTLAFTSSTDPAKAAA----------NNMKGGGLPSQGLIHAQF 333

Query: 285 FGAQSSGNPHQHLPVGFSYGHSVPAAVQVKPAEQKQPAGE 404
             A  +G PHQ LP GFSY H VP  VQVKPAE+KQPAGE
Sbjct: 334 AAAHPAGKPHQILPAGFSYVHPVPTVVQVKPAEKKQPAGE 373


>ref|XP_002311616.1| predicted protein [Populus trichocarpa] gi|222851436|gb|EEE88983.1|
            predicted protein [Populus trichocarpa]
          Length = 1518

 Score =  112 bits (279), Expect = 4e-23
 Identities = 59/100 (59%), Positives = 65/100 (65%)
 Frame = +3

Query: 105  GTTVSSSTGMLSLCTPVTLSSTSTTDPXXXXXXXXXXXXXXXSNMKGGGLSSQGTLHAAQ 284
            G   +SSTGML+LC PVTL++TSTTDP               +NMKGGGL  QG +HA  
Sbjct: 1426 GAPATSSTGMLNLCHPVTLANTSTTDPAKAVAAAS-------NNMKGGGLPPQGLIHAQF 1478

Query: 285  FGAQSSGNPHQHLPVGFSYGHSVPAAVQVKPAEQKQPAGE 404
               Q SG PHQ LP GF Y H VP AVQVKPAEQKQPAGE
Sbjct: 1479 AAVQPSGKPHQILPAGFHYVHPVPTAVQVKPAEQKQPAGE 1518


>ref|XP_002277982.2| PREDICTED: protein TIME FOR COFFEE-like [Vitis vinifera]
          Length = 1587

 Score =  107 bits (266), Expect = 1e-21
 Identities = 62/119 (52%), Positives = 72/119 (60%), Gaps = 1/119 (0%)
 Frame = +3

Query: 48   GYYXXXXXXXXXXXXXXXXGTTVSSSTGMLSLCTPVTLSSTSTTDPXXXXXXXXXXXXXX 227
            GYY                G++ +SSTGML+LC PVTL+S ST+DP              
Sbjct: 1466 GYYLQRRRSEQHPLQQQPQGSSGTSSTGMLTLCPPVTLASASTSDPARAIAA-------- 1517

Query: 228  XSNMKGGGLSSQGTLHAAQFGA-QSSGNPHQHLPVGFSYGHSVPAAVQVKPAEQKQPAG 401
             SNMKGGGL SQG +HAAQ+ A QS GNPH  +   F Y H+VP AVQVKPAEQKQPAG
Sbjct: 1518 -SNMKGGGLPSQG-IHAAQYAAAQSPGNPHSLMHASFPYVHAVPTAVQVKPAEQKQPAG 1574


>ref|XP_004170713.1| PREDICTED: protein TIME FOR COFFEE-like, partial [Cucumis sativus]
          Length = 979

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 58/101 (57%), Positives = 65/101 (64%), Gaps = 2/101 (1%)
 Frame = +3

Query: 105  GTTVSSSTGMLSLCTPVTLSSTSTTDPXXXXXXXXXXXXXXXSNMK-GGGLSSQGTLHAA 281
            G+  +SS GMLSLC PVTL  +STTDP               +NMK GGGL +Q  LH A
Sbjct: 884  GSGGTSSNGMLSLCHPVTLGGSSTTDP----AKAVAAAAAAANNMKGGGGLPTQAILHPA 939

Query: 282  QF-GAQSSGNPHQHLPVGFSYGHSVPAAVQVKPAEQKQPAG 401
            QF  AQSSGNPHQ +P GF Y H+  AAVQVK  EQKQPAG
Sbjct: 940  QFAAAQSSGNPHQLVPAGFPYVHT--AAVQVKSTEQKQPAG 978


>ref|XP_004140148.1| PREDICTED: protein TIME FOR COFFEE-like [Cucumis sativus]
          Length = 1560

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 58/101 (57%), Positives = 65/101 (64%), Gaps = 2/101 (1%)
 Frame = +3

Query: 105  GTTVSSSTGMLSLCTPVTLSSTSTTDPXXXXXXXXXXXXXXXSNMK-GGGLSSQGTLHAA 281
            G+  +SS GMLSLC PVTL  +STTDP               +NMK GGGL +Q  LH A
Sbjct: 1465 GSGGTSSNGMLSLCHPVTLGGSSTTDP----AKAVAAAAAAANNMKGGGGLPTQAILHPA 1520

Query: 282  QF-GAQSSGNPHQHLPVGFSYGHSVPAAVQVKPAEQKQPAG 401
            QF  AQSSGNPHQ +P GF Y H+  AAVQVK  EQKQPAG
Sbjct: 1521 QFAAAQSSGNPHQLVPAGFPYVHT--AAVQVKSTEQKQPAG 1559


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