BLASTX nr result

ID: Panax21_contig00004225 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00004225
         (1601 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272905.2| PREDICTED: F-box protein SKIP17 [Vitis vinif...   115   3e-23
emb|CBI28700.3| unnamed protein product [Vitis vinifera]              115   3e-23
emb|CAN61447.1| hypothetical protein VITISV_024140 [Vitis vinifera]   115   3e-23
ref|XP_002520729.1| conserved hypothetical protein [Ricinus comm...   112   3e-22
ref|XP_002307587.1| predicted protein [Populus trichocarpa] gi|2...   111   5e-22

>ref|XP_002272905.2| PREDICTED: F-box protein SKIP17 [Vitis vinifera]
          Length = 486

 Score =  115 bits (288), Expect = 3e-23
 Identities = 63/110 (57%), Positives = 72/110 (65%)
 Frame = -1

Query: 332 VFSMLDTQSVCYAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLCYASIDLMTVVPKV 153
           VFSMLDTQS+CY AA                              LCYA+IDL TVVPKV
Sbjct: 119 VFSMLDTQSLCYTAATCSMFHKCAMDP------------------LCYANIDLTTVVPKV 160

Query: 152 NNLVVSTMIQRAGKALRSIKLGLVPGPTASLGSSQPLVYSMRNSTDVSGF 3
           NN VVSTMIQRAGK L+S++LG+VPGPT S GSSQPLVY++RNS D +GF
Sbjct: 161 NNAVVSTMIQRAGKVLQSLRLGIVPGPTLSPGSSQPLVYTIRNSVDAAGF 210


>emb|CBI28700.3| unnamed protein product [Vitis vinifera]
          Length = 532

 Score =  115 bits (288), Expect = 3e-23
 Identities = 63/110 (57%), Positives = 72/110 (65%)
 Frame = -1

Query: 332 VFSMLDTQSVCYAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLCYASIDLMTVVPKV 153
           VFSMLDTQS+CY AA                              LCYA+IDL TVVPKV
Sbjct: 119 VFSMLDTQSLCYTAATCSMFHKCAMDP------------------LCYANIDLTTVVPKV 160

Query: 152 NNLVVSTMIQRAGKALRSIKLGLVPGPTASLGSSQPLVYSMRNSTDVSGF 3
           NN VVSTMIQRAGK L+S++LG+VPGPT S GSSQPLVY++RNS D +GF
Sbjct: 161 NNAVVSTMIQRAGKVLQSLRLGIVPGPTLSPGSSQPLVYTIRNSVDAAGF 210


>emb|CAN61447.1| hypothetical protein VITISV_024140 [Vitis vinifera]
          Length = 603

 Score =  115 bits (288), Expect = 3e-23
 Identities = 63/110 (57%), Positives = 72/110 (65%)
 Frame = -1

Query: 332 VFSMLDTQSVCYAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLCYASIDLMTVVPKV 153
           VFSMLDTQS+CY AA                              LCYA+IDL TVVPKV
Sbjct: 119 VFSMLDTQSLCYTAATCSMFHKCAMDP------------------LCYANIDLTTVVPKV 160

Query: 152 NNLVVSTMIQRAGKALRSIKLGLVPGPTASLGSSQPLVYSMRNSTDVSGF 3
           NN VVSTMIQRAGK L+S++LG+VPGPT S GSSQPLVY++RNS D +GF
Sbjct: 161 NNAVVSTMIQRAGKVLQSLRLGIVPGPTLSPGSSQPLVYTIRNSVDAAGF 210


>ref|XP_002520729.1| conserved hypothetical protein [Ricinus communis]
           gi|223540114|gb|EEF41691.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 515

 Score =  112 bits (280), Expect = 3e-22
 Identities = 63/108 (58%), Positives = 72/108 (66%)
 Frame = -1

Query: 332 VFSMLDTQSVCYAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLCYASIDLMTVVPKV 153
           VFSMLDTQS+CYAAA                              LCYA+IDL TVVPKV
Sbjct: 113 VFSMLDTQSLCYAAATCSMFHKCAMDP------------------LCYANIDLTTVVPKV 154

Query: 152 NNLVVSTMIQRAGKALRSIKLGLVPGPTASLGSSQPLVYSMRNSTDVS 9
           NN VVSTMIQRAGK+L+S+KLG+VPGPT+S GS + LVYS+RNS DVS
Sbjct: 155 NNAVVSTMIQRAGKSLQSLKLGIVPGPTSSPGSCETLVYSIRNSVDVS 202


>ref|XP_002307587.1| predicted protein [Populus trichocarpa] gi|222857036|gb|EEE94583.1|
           predicted protein [Populus trichocarpa]
          Length = 676

 Score =  111 bits (278), Expect = 5e-22
 Identities = 62/110 (56%), Positives = 70/110 (63%)
 Frame = -1

Query: 332 VFSMLDTQSVCYAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLCYASIDLMTVVPKV 153
           +FSMLD QS+CYAAA                              LCYA+IDL TVVPKV
Sbjct: 118 LFSMLDAQSLCYAAATCSMFYKCAMDP------------------LCYANIDLTTVVPKV 159

Query: 152 NNLVVSTMIQRAGKALRSIKLGLVPGPTASLGSSQPLVYSMRNSTDVSGF 3
           NN VVSTMIQRAGKALRS+KLG+VPGPT   GS QPLVY +RN+ +VS F
Sbjct: 160 NNAVVSTMIQRAGKALRSLKLGIVPGPTLPHGSCQPLVYGIRNAVEVSNF 209


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