BLASTX nr result

ID: Panax21_contig00004071 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00004071
         (1370 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002327176.1| f-box family protein [Populus trichocarpa] g...   562   e-158
ref|XP_002510165.1| skip-2, putative [Ricinus communis] gi|22355...   561   e-157
ref|XP_002301165.1| f-box family protein [Populus trichocarpa] g...   542   e-152
ref|XP_003589128.1| F-box protein [Medicago truncatula] gi|87240...   535   e-150
ref|XP_004141272.1| PREDICTED: F-box protein At1g47056-like [Cuc...   535   e-149

>ref|XP_002327176.1| f-box family protein [Populus trichocarpa]
            gi|222835491|gb|EEE73926.1| f-box family protein [Populus
            trichocarpa]
          Length = 534

 Score =  562 bits (1448), Expect = e-158
 Identities = 278/397 (70%), Positives = 322/397 (81%)
 Frame = +3

Query: 3    RCLKLTRLKLRACRGLTDAGLSEFAKNCKYLKKLSCGSCTFGAKGMNALLDNCTSLEELS 182
            RC  LTRLKLR+CR LTDAG++ FAKNCK LKKLSCGSCTFGA+GMNA+LDNC SLEELS
Sbjct: 140  RCRNLTRLKLRSCRELTDAGMAAFAKNCKALKKLSCGSCTFGARGMNAILDNCASLEELS 199

Query: 183  VKRLRCSPEGETIQPIGPGVAASSLKTICLKELYFGQCFGPLIMGAKNLKTLKLFRCSGD 362
            +KRLR   +G   +P+GPG+AA+SLKTICLKELY GQCFGPLI+G+KNLKTLKLFRCSGD
Sbjct: 200  LKRLRGITDGAAAEPVGPGLAAASLKTICLKELYNGQCFGPLIIGSKNLKTLKLFRCSGD 259

Query: 363  WDKLLEEITSRVISLVEVHLERIQVSDTGICALSNCTNIEILHLVKTPECSNLGLMSVAE 542
            WDKLL+ I+ RV  +VE+HLER+QVSDTG+ A+SNC N+EILHLVKTPEC++ GL+S+AE
Sbjct: 260  WDKLLQVISDRVTGMVEIHLERLQVSDTGLAAISNCLNLEILHLVKTPECTDTGLVSIAE 319

Query: 543  HCKRLRKLHIDGWKTNRISDEGLVAVAKHCPNLQELVLIGVNPTRVSLERLATNCQSLER 722
             C+ LRKLH+DGWKTNRI D+GL AVAK+CPNLQELVLIGVNPT++S+E LA+NCQ+LER
Sbjct: 320  RCRLLRKLHVDGWKTNRIGDDGLSAVAKYCPNLQELVLIGVNPTKISVELLASNCQNLER 379

Query: 723  LALCGSETVGDAEISCIAAKCVALKKLCIKNCPVSDHGMEALAGGCPNLVKVKVKKCRAV 902
            LALCGS+TVGDAEISCIAAKCVALKKLCIK+CPVSDHGMEALA GCPNLVKVKVKKCRAV
Sbjct: 380  LALCGSDTVGDAEISCIAAKCVALKKLCIKSCPVSDHGMEALANGCPNLVKVKVKKCRAV 439

Query: 903  TSEGADWLRSSRVSLAVNLDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNVA 1082
            T E ADWLR+ R SLAVNLD                                     ++A
Sbjct: 440  TCECADWLRTKRGSLAVNLDCGEPEHQDASASDGGLLENVVEFHSVANQMPLP----SIA 495

Query: 1083 SSSTGRSTSFKARLRLTAGRSLVTSTLRRWSSFSGSS 1193
            SSSTGRSTSFK+RL L +G++LV  T RRWS  + SS
Sbjct: 496  SSSTGRSTSFKSRLGLLSGKNLVACTFRRWSGGNSSS 532


>ref|XP_002510165.1| skip-2, putative [Ricinus communis] gi|223550866|gb|EEF52352.1|
            skip-2, putative [Ricinus communis]
          Length = 536

 Score =  561 bits (1446), Expect = e-157
 Identities = 283/399 (70%), Positives = 325/399 (81%), Gaps = 1/399 (0%)
 Frame = +3

Query: 3    RCLKLTRLKLRACRGLTDAGLSEFAKNCKYLKKLSCGSCTFGAKGMNALLDNCTSLEELS 182
            RC  LTRLKLR+CR +TDAG++ FAKNCK LKKLSCGSCTFGAKGMNA+LDNC SLEELS
Sbjct: 141  RCRNLTRLKLRSCRDVTDAGMAAFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCASLEELS 200

Query: 183  VKRLRCSPEGETIQPIGPGVAASSLKTICLKELYFGQCFGPLIMGAKNLKTLKLFRCSGD 362
            +KRLR   +G   +PIGPG+AA+SLKTICLKELY GQCFGPLI+G+KNL+TLKLFRCSGD
Sbjct: 201  IKRLRGITDGAAAEPIGPGLAANSLKTICLKELYNGQCFGPLIIGSKNLRTLKLFRCSGD 260

Query: 363  WDKLLEEITSRVISLVEVHLERIQVSDTGICALSNCTNIEILHLVKTPECSNLGLMSVAE 542
            WDKLL+ I+ RV  +VE+HLER+QVSD G+ A+SNC ++EILHLVKTPEC+NLGL S+AE
Sbjct: 261  WDKLLQVISDRVTGMVEIHLERLQVSDVGLSAISNCLDLEILHLVKTPECTNLGLGSIAE 320

Query: 543  HCKRLRKLHIDGWKTNRISDEGLVAVAKHCPNLQELVLIGVNPTRVSLERLATNCQSLER 722
             CK LRKLHIDGWK NRI D+GL+AVAK+CPNLQELVLIGVNPT+ SLE LA+NCQ+LER
Sbjct: 321  RCKLLRKLHIDGWKANRIGDDGLIAVAKNCPNLQELVLIGVNPTKSSLEMLASNCQNLER 380

Query: 723  LALCGSETVGDAEISCIAAKCVALKKLCIKNCPVSDHGMEALAGGCPNLVKVKVKKCRAV 902
            LALCGS+TVGDAEISCIAAKC++LKKLCIK+CPVSDHGMEALA GCPNLVKVKVKKCR V
Sbjct: 381  LALCGSDTVGDAEISCIAAKCISLKKLCIKSCPVSDHGMEALASGCPNLVKVKVKKCRGV 440

Query: 903  TSEGADWLRSSRVSLAVNLDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNVA 1082
            T EGADWLR+SR SLAVNLD+                                    +VA
Sbjct: 441  TCEGADWLRASRGSLAVNLDSGEHEHHDASASDGGVQENAVEIPPGQIAAVVP----SVA 496

Query: 1083 SSST-GRSTSFKARLRLTAGRSLVTSTLRRWSSFSGSSG 1196
            SSST GRSTSFK+RL L +GR+LV  TLRRWS  SG++G
Sbjct: 497  SSSTAGRSTSFKSRLGLLSGRNLVACTLRRWS--SGNTG 533


>ref|XP_002301165.1| f-box family protein [Populus trichocarpa]
            gi|222842891|gb|EEE80438.1| f-box family protein [Populus
            trichocarpa]
          Length = 533

 Score =  542 bits (1397), Expect = e-152
 Identities = 272/397 (68%), Positives = 314/397 (79%)
 Frame = +3

Query: 3    RCLKLTRLKLRACRGLTDAGLSEFAKNCKYLKKLSCGSCTFGAKGMNALLDNCTSLEELS 182
            RC  LTRLKLRACR +TDAG++ FAKNCK LKK SCGSC FGAKGMNA+LDNC SLE+LS
Sbjct: 139  RCRNLTRLKLRACREITDAGMAAFAKNCKALKKFSCGSCAFGAKGMNAMLDNCASLEDLS 198

Query: 183  VKRLRCSPEGETIQPIGPGVAASSLKTICLKELYFGQCFGPLIMGAKNLKTLKLFRCSGD 362
            VKRLR   +G T +PIGPG+AA+SLKTICLKELY GQCFGPLI+G+KNLKTLKLFRCSGD
Sbjct: 199  VKRLRGITDGATAEPIGPGLAAASLKTICLKELYNGQCFGPLIIGSKNLKTLKLFRCSGD 258

Query: 363  WDKLLEEITSRVISLVEVHLERIQVSDTGICALSNCTNIEILHLVKTPECSNLGLMSVAE 542
            WDKLL+ I  RV  +VE+HLER+QVSDTG+ A+SNC N+EILHLVKTPEC+++GL+S+AE
Sbjct: 259  WDKLLQVIADRVTGMVEIHLERLQVSDTGLVAISNCLNLEILHLVKTPECTDIGLVSIAE 318

Query: 543  HCKRLRKLHIDGWKTNRISDEGLVAVAKHCPNLQELVLIGVNPTRVSLERLATNCQSLER 722
             C+ LRKLHIDGWK +RI D+GL+AVAK+C NLQELVLIGVNPT++SLE LA+NCQ+LER
Sbjct: 319  RCRLLRKLHIDGWKAHRIGDDGLMAVAKYCLNLQELVLIGVNPTQISLELLASNCQNLER 378

Query: 723  LALCGSETVGDAEISCIAAKCVALKKLCIKNCPVSDHGMEALAGGCPNLVKVKVKKCRAV 902
            LALCGS+TVGD EISCIAAKCVALKKLCIK+CPVSDHG+EALA GCPNLVKVKVKKCRAV
Sbjct: 379  LALCGSDTVGDVEISCIAAKCVALKKLCIKSCPVSDHGLEALANGCPNLVKVKVKKCRAV 438

Query: 903  TSEGADWLRSSRVSLAVNLDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNVA 1082
            T E AD LR  R SLAVNLD+                                    ++A
Sbjct: 439  TYECADLLRMKRGSLAVNLDSGEPEHQDASASDGGVQENVDEFHPVPNQMPLP----SIA 494

Query: 1083 SSSTGRSTSFKARLRLTAGRSLVTSTLRRWSSFSGSS 1193
             SSTGRSTSFK+R  L +G+S    T R WSS + SS
Sbjct: 495  PSSTGRSTSFKSRFGLWSGKSFAACTFRGWSSGNSSS 531


>ref|XP_003589128.1| F-box protein [Medicago truncatula] gi|87240761|gb|ABD32619.1|
            Cyclin-like F-box [Medicago truncatula]
            gi|355478176|gb|AES59379.1| F-box protein [Medicago
            truncatula]
          Length = 547

 Score =  535 bits (1379), Expect = e-150
 Identities = 273/400 (68%), Positives = 310/400 (77%), Gaps = 1/400 (0%)
 Frame = +3

Query: 3    RCLKLTRLKLRACRGLTDAGLSEFAKNCKYLKKLSCGSCTFGAKGMNALLDNCTSLEELS 182
            RC  LTRLKLRACR LTDAG+  FAKNCK L+KLSCGSCTFG+KGMNA+L+NC +LEELS
Sbjct: 149  RCPNLTRLKLRACRELTDAGMEAFAKNCKGLRKLSCGSCTFGSKGMNAVLENCAALEELS 208

Query: 183  VKRLRCSPEGETIQPIGPGVAASSLKTICLKELYFGQCFGPLIMGAKNLKTLKLFRCSGD 362
            VKRLR   E    +PIGPGVAA+SLKTICLKELY GQCFG LI+GAKNLKTLKLFRCSGD
Sbjct: 209  VKRLRGIAETAVAEPIGPGVAAASLKTICLKELYNGQCFGSLILGAKNLKTLKLFRCSGD 268

Query: 363  WDKLLEEITSRVISL-VEVHLERIQVSDTGICALSNCTNIEILHLVKTPECSNLGLMSVA 539
            WD L   +  RV S+ VEVH ER+Q+SD G+ A+SNC+N+EILHLVKTPEC+++GL+++A
Sbjct: 269  WDTLFTLMAERVASMIVEVHFERLQISDIGLQAISNCSNLEILHLVKTPECTDMGLVAIA 328

Query: 540  EHCKRLRKLHIDGWKTNRISDEGLVAVAKHCPNLQELVLIGVNPTRVSLERLATNCQSLE 719
            E CK LRKLHIDGWK NRI DEGL+AVAK CPNLQELVLIGVNPTRVSLE LA+NC +LE
Sbjct: 329  ERCKLLRKLHIDGWKANRIGDEGLIAVAKFCPNLQELVLIGVNPTRVSLEMLASNCPNLE 388

Query: 720  RLALCGSETVGDAEISCIAAKCVALKKLCIKNCPVSDHGMEALAGGCPNLVKVKVKKCRA 899
            RLALC S+TVGD EISCIAAKC+ALKKLCIK+CPVSD GMEALA GCPNLVKVKVKKC+ 
Sbjct: 389  RLALCASDTVGDPEISCIAAKCLALKKLCIKSCPVSDLGMEALANGCPNLVKVKVKKCKG 448

Query: 900  VTSEGADWLRSSRVSLAVNLDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNV 1079
            VT EG DWLR +RVS+AVNLD                                     N+
Sbjct: 449  VTPEGGDWLRHTRVSVAVNLDAVEAELQDASASDGGAQDNGIEFPSMPGSAASTSA--NI 506

Query: 1080 ASSSTGRSTSFKARLRLTAGRSLVTSTLRRWSSFSGSSGH 1199
            AS ST RS+SFK RL L +GR +V STLRRWS  S S+ H
Sbjct: 507  ASRSTVRSSSFKQRLGLLSGRKIVASTLRRWSGGSTSARH 546


>ref|XP_004141272.1| PREDICTED: F-box protein At1g47056-like [Cucumis sativus]
            gi|449515093|ref|XP_004164584.1| PREDICTED: F-box protein
            At1g47056-like [Cucumis sativus]
          Length = 535

 Score =  535 bits (1378), Expect = e-149
 Identities = 275/400 (68%), Positives = 313/400 (78%)
 Frame = +3

Query: 3    RCLKLTRLKLRACRGLTDAGLSEFAKNCKYLKKLSCGSCTFGAKGMNALLDNCTSLEELS 182
            RC  LTRLKLRACR LTD G++ FAKNCK LKKLSCGSCTFGAKGMNA+LDNC++LEELS
Sbjct: 140  RCRNLTRLKLRACRELTDVGMAAFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCSALEELS 199

Query: 183  VKRLRCSPEGETIQPIGPGVAASSLKTICLKELYFGQCFGPLIMGAKNLKTLKLFRCSGD 362
            VKRLR   +  T +PIGPG+A SSLKTICLK+LY  QCFGPL++GAK+L+TLKLFRCSGD
Sbjct: 200  VKRLRGITDS-TAEPIGPGIAGSSLKTICLKDLYNAQCFGPLLIGAKSLRTLKLFRCSGD 258

Query: 363  WDKLLEEITSRVISLVEVHLERIQVSDTGICALSNCTNIEILHLVKTPECSNLGLMSVAE 542
            WD LL  I  RV  LVEVHLER+QVSD G+ A+SNC ++EILHLVKTPEC+NLG++++AE
Sbjct: 259  WDALLRVIADRVTGLVEVHLERLQVSDVGLSAISNCLDLEILHLVKTPECTNLGIVALAE 318

Query: 543  HCKRLRKLHIDGWKTNRISDEGLVAVAKHCPNLQELVLIGVNPTRVSLERLATNCQSLER 722
             CK LRKLHIDGWK NRI DEGLVAVA++C NLQELVLIGVNPT+VSLE LA+NC++LER
Sbjct: 319  RCKLLRKLHIDGWKANRIGDEGLVAVARNCSNLQELVLIGVNPTKVSLEILASNCRNLER 378

Query: 723  LALCGSETVGDAEISCIAAKCVALKKLCIKNCPVSDHGMEALAGGCPNLVKVKVKKCRAV 902
            LALCGS+TVGD+EISCIAAKC+ALKKLCIK+CPVSD GMEALA GCPNLVKVKVKKCR V
Sbjct: 379  LALCGSDTVGDSEISCIAAKCIALKKLCIKSCPVSDQGMEALAEGCPNLVKVKVKKCRGV 438

Query: 903  TSEGADWLRSSRVSLAVNLDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNVA 1082
            T EGAD LR SR SLAVNLD+                                     +A
Sbjct: 439  TPEGADSLRLSRGSLAVNLDSGEPEHPDASASEGGIQDNVVDFHPIPNQVVPP----TIA 494

Query: 1083 SSSTGRSTSFKARLRLTAGRSLVTSTLRRWSSFSGSSGHN 1202
            SSS GRS+S K+RL L AGR LV  TLRRWS  + SS  N
Sbjct: 495  SSSAGRSSSLKSRLGLLAGRGLVACTLRRWSGGNSSSRIN 534


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