BLASTX nr result

ID: Panax21_contig00003622 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00003622
         (820 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285833.1| PREDICTED: 30S ribosomal protein S13, chloro...   248   9e-64
gb|ADR30788.1| chloroplast 30S ribosomal protein S13 [Hevea bras...   244   2e-62
ref|XP_002306609.1| predicted protein [Populus trichocarpa] gi|2...   241   1e-61
ref|XP_002302256.1| predicted protein [Populus trichocarpa] gi|1...   240   2e-61
ref|NP_001237689.1| uncharacterized protein LOC100499902 [Glycin...   236   3e-60

>ref|XP_002285833.1| PREDICTED: 30S ribosomal protein S13, chloroplastic [Vitis
           vinifera] gi|302141873|emb|CBI19076.3| unnamed protein
           product [Vitis vinifera]
          Length = 167

 Score =  248 bits (634), Expect = 9e-64
 Identities = 127/154 (82%), Positives = 136/154 (88%)
 Frame = -2

Query: 681 MAQAVATPVAPSISLICNTSIIKHHHSTSLSFPISTTPKFSGLSIKCARVGGVEIPNAKR 502
           MAQA+ATP+APS+SLICNT       S +LSF     PKF GLSIKCARVGGVEIPN+KR
Sbjct: 1   MAQALATPLAPSLSLICNTRN-PLSPSNNLSFSTPAPPKFGGLSIKCARVGGVEIPNSKR 59

Query: 501 VQYSLQYIHGIGRTRALQILNDLKMENKITKDLSEEELITLRDEVSKYMIEGDLRRFNAL 322
           V+YSLQYIHGIGR+R+ QIL DL MENKITKDLSEEELITLRDEVSKYMIEGDLRRFNAL
Sbjct: 60  VEYSLQYIHGIGRSRSKQILCDLGMENKITKDLSEEELITLRDEVSKYMIEGDLRRFNAL 119

Query: 321 NIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTL 220
            IRRLKEIQCYRG+RHIQGLPCRGQRTKNNCRTL
Sbjct: 120 AIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTL 153


>gb|ADR30788.1| chloroplast 30S ribosomal protein S13 [Hevea brasiliensis]
          Length = 168

 Score =  244 bits (622), Expect = 2e-62
 Identities = 123/154 (79%), Positives = 135/154 (87%)
 Frame = -2

Query: 681 MAQAVATPVAPSISLICNTSIIKHHHSTSLSFPISTTPKFSGLSIKCARVGGVEIPNAKR 502
           MAQ +A PVAPS+SLICN     +  ST +S PIS  PK  GLSI+CARVGGVEIPN KR
Sbjct: 1   MAQTLAMPVAPSLSLICN-GWRNNSLSTFVSLPISNPPKIHGLSIQCARVGGVEIPNNKR 59

Query: 501 VQYSLQYIHGIGRTRALQILNDLKMENKITKDLSEEELITLRDEVSKYMIEGDLRRFNAL 322
           V+YSLQYIHG+GR+RA QIL+DL M+NKITKDLSEEELITLRDEVSKYMIEGDLRRFNAL
Sbjct: 60  VEYSLQYIHGVGRSRARQILSDLSMQNKITKDLSEEELITLRDEVSKYMIEGDLRRFNAL 119

Query: 321 NIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTL 220
           NIR LKEIQC+RG+RHIQGLPCRGQRTKNNCRTL
Sbjct: 120 NIRGLKEIQCHRGIRHIQGLPCRGQRTKNNCRTL 153


>ref|XP_002306609.1| predicted protein [Populus trichocarpa] gi|222856058|gb|EEE93605.1|
           predicted protein [Populus trichocarpa]
          Length = 168

 Score =  241 bits (615), Expect = 1e-61
 Identities = 122/154 (79%), Positives = 134/154 (87%)
 Frame = -2

Query: 681 MAQAVATPVAPSISLICNTSIIKHHHSTSLSFPISTTPKFSGLSIKCARVGGVEIPNAKR 502
           MAQ +A PV PS+S ICN  +     S+S+S P+S  PK   LSI+CARVGGVEIPN+KR
Sbjct: 1   MAQTLAIPVVPSLSAICN-GLKNTSLSSSISPPVSNPPKVCSLSIRCARVGGVEIPNSKR 59

Query: 501 VQYSLQYIHGIGRTRALQILNDLKMENKITKDLSEEELITLRDEVSKYMIEGDLRRFNAL 322
           V+YSLQYIHGIGR+ A QIL+DL MENKITKDLSE+ELITLRDEVSKYMIEGDLRRFNAL
Sbjct: 60  VEYSLQYIHGIGRSIARQILSDLTMENKITKDLSEDELITLRDEVSKYMIEGDLRRFNAL 119

Query: 321 NIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTL 220
           NIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTL
Sbjct: 120 NIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTL 153


>ref|XP_002302256.1| predicted protein [Populus trichocarpa] gi|118488232|gb|ABK95935.1|
           unknown [Populus trichocarpa]
           gi|222843982|gb|EEE81529.1| predicted protein [Populus
           trichocarpa]
          Length = 168

 Score =  240 bits (613), Expect = 2e-61
 Identities = 121/154 (78%), Positives = 131/154 (85%)
 Frame = -2

Query: 681 MAQAVATPVAPSISLICNTSIIKHHHSTSLSFPISTTPKFSGLSIKCARVGGVEIPNAKR 502
           MAQ +A PV PS+S ICN  +     S S+S PIS  PK   LSI+CARVGGVEIPN+KR
Sbjct: 1   MAQTLAMPVVPSLSAICN-GLKSTSLSNSISLPISNPPKAGSLSIRCARVGGVEIPNSKR 59

Query: 501 VQYSLQYIHGIGRTRALQILNDLKMENKITKDLSEEELITLRDEVSKYMIEGDLRRFNAL 322
           V+YSLQYIHGIGR+ A QIL+DL MENKITKDLSEEELI LRDEVSKY IEGDLRRFNAL
Sbjct: 60  VEYSLQYIHGIGRSNARQILSDLSMENKITKDLSEEELIILRDEVSKYTIEGDLRRFNAL 119

Query: 321 NIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTL 220
           NIRRLKEIQCYRG+RHIQGLPCRGQRTKNNCRTL
Sbjct: 120 NIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTL 153


>ref|NP_001237689.1| uncharacterized protein LOC100499902 [Glycine max]
           gi|255627531|gb|ACU14110.1| unknown [Glycine max]
          Length = 162

 Score =  236 bits (603), Expect = 3e-60
 Identities = 114/154 (74%), Positives = 135/154 (87%)
 Frame = -2

Query: 681 MAQAVATPVAPSISLICNTSIIKHHHSTSLSFPISTTPKFSGLSIKCARVGGVEIPNAKR 502
           MAQ +A PVAPS+++I N+ + K     +LS P+   PKF GLSIKC RVGGVEIPN KR
Sbjct: 1   MAQTLAMPVAPSLAIISNSRLSK-----TLSVPVLNNPKFQGLSIKCVRVGGVEIPNNKR 55

Query: 501 VQYSLQYIHGIGRTRALQILNDLKMENKITKDLSEEELITLRDEVSKYMIEGDLRRFNAL 322
           ++YSLQ+IHG+GRTRA QIL D++M+NKITK+L+EEELITLRDEVSKYMIEGDLRRFNA+
Sbjct: 56  IEYSLQHIHGVGRTRAKQILCDIQMDNKITKELTEEELITLRDEVSKYMIEGDLRRFNAV 115

Query: 321 NIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTL 220
           NI+RLK+IQCYRG+RHIQGLPCRGQRTKNNCRTL
Sbjct: 116 NIKRLKDIQCYRGIRHIQGLPCRGQRTKNNCRTL 149


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