BLASTX nr result

ID: Panax21_contig00003616 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00003616
         (2884 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003547685.1| PREDICTED: succinate dehydrogenase [ubiquino...   488   e-135
ref|XP_003553891.1| PREDICTED: succinate dehydrogenase [ubiquino...   487   e-135
gb|ADN34136.1| succinate dehydrogenase [Cucumis melo subsp. melo]     474   e-131
ref|XP_002526944.1| succinate dehydrogenase, putative [Ricinus c...   473   e-130
gb|AFK34767.1| unknown [Medicago truncatula]                          471   e-130

>ref|XP_003547685.1| PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit
            2, mitochondrial-like [Glycine max]
          Length = 279

 Score =  488 bits (1257), Expect = e-135
 Identities = 235/276 (85%), Positives = 249/276 (90%), Gaps = 3/276 (1%)
 Frame = -3

Query: 1142 MATGLVRRVMARVQSSPASKLIIARAHASEVDAQKREPKARSTSTLKTFQIYRWNPDNPT 963
            MATGL++R   RV SSPA KL I RAHASE  AQ+ EPKAR T TLKTFQIYRWNP+NP+
Sbjct: 1    MATGLLKRAAQRVPSSPAFKLAILRAHASEAQAQQVEPKARETPTLKTFQIYRWNPENPS 60

Query: 962  KPELKDYQIDLKDCGPMVLDALIKIKNE-DPTLTFRRSCREGICGSCAMNIDGCNGLACL 786
            KPELKDYQI+LK+CGPMVLDALIKIKNE DP+LTFRRSCREGICGSCAMNIDGCNGLACL
Sbjct: 61   KPELKDYQINLKECGPMVLDALIKIKNEIDPSLTFRRSCREGICGSCAMNIDGCNGLACL 120

Query: 785  TKIPD--GSSASMITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKTPSKDGKENLQTK 612
            TKIP    S+A+ ITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRK P   GKE LQ+K
Sbjct: 121  TKIPSEKNSAATTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPVPGKEILQSK 180

Query: 611  KDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWIMDSRDEYTKERLDAI 432
            K+R KLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWI DSRDEYTKERLDAI
Sbjct: 181  KEREKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLDAI 240

Query: 431  CDEFKLYRCHTILNCARACPKGLNPGKQINNIKKLQ 324
             DEFKLYRCHTILNCARACPKGLNPGKQI++IK LQ
Sbjct: 241  NDEFKLYRCHTILNCARACPKGLNPGKQISHIKSLQ 276


>ref|XP_003553891.1| PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit
            2, mitochondrial-like [Glycine max]
          Length = 277

 Score =  487 bits (1253), Expect = e-135
 Identities = 230/274 (83%), Positives = 248/274 (90%), Gaps = 1/274 (0%)
 Frame = -3

Query: 1142 MATGLVRRVMARVQSSPASKLIIARAHASEVDAQKREPKARSTSTLKTFQIYRWNPDNPT 963
            MATGL++R   R+ SSP  KL + RAHASE  AQ+ EPKAR T TLKTFQIYRW+P+NP+
Sbjct: 1    MATGLLKRAAQRLPSSPGFKLALLRAHASEAQAQQVEPKARGTPTLKTFQIYRWSPENPS 60

Query: 962  KPELKDYQIDLKDCGPMVLDALIKIKNE-DPTLTFRRSCREGICGSCAMNIDGCNGLACL 786
            KPELKDYQI+LK+CGPMVLDALIKIKNE DP+LTFRRSCREGICGSCAMNIDGCNGLACL
Sbjct: 61   KPELKDYQINLKECGPMVLDALIKIKNEIDPSLTFRRSCREGICGSCAMNIDGCNGLACL 120

Query: 785  TKIPDGSSASMITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKTPSKDGKENLQTKKD 606
            TKIP   +A+ ITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRK P + GKE LQ+KK+
Sbjct: 121  TKIPSEGAATTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPEPGKEILQSKKE 180

Query: 605  RAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWIMDSRDEYTKERLDAICD 426
            R KLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWI DSRDEYTKERLDAI D
Sbjct: 181  REKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLDAIND 240

Query: 425  EFKLYRCHTILNCARACPKGLNPGKQINNIKKLQ 324
            EFKLYRCHTILNCARACPKGLNPGKQI++IK LQ
Sbjct: 241  EFKLYRCHTILNCARACPKGLNPGKQISHIKSLQ 274


>gb|ADN34136.1| succinate dehydrogenase [Cucumis melo subsp. melo]
          Length = 277

 Score =  474 bits (1219), Expect = e-131
 Identities = 227/276 (82%), Positives = 250/276 (90%), Gaps = 2/276 (0%)
 Frame = -3

Query: 1142 MATGLVRRVMARVQSSPASKLIIARAHASEVDAQKREPKARSTSTLKTFQIYRWNPDNPT 963
            MATG++RRV++RV +S  S+ +  RAHASE +AQ+ E KA ++S LKTF IYRWNPD+P+
Sbjct: 1    MATGILRRVLSRVSASSPSRFVRIRAHASEAEAQQVEQKATASSNLKTFAIYRWNPDSPS 60

Query: 962  KPELKDYQIDLKDCGPMVLDALIKIKNE-DPTLTFRRSCREGICGSCAMNIDGCNGLACL 786
            KPEL++Y+IDLK+CGPMVLDALIKIKNE DP+LTFRRSCREGICGSCAMNIDGCNGLACL
Sbjct: 61   KPELQEYKIDLKECGPMVLDALIKIKNEIDPSLTFRRSCREGICGSCAMNIDGCNGLACL 120

Query: 785  TKIPDGSSASMITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKT-PSKDGKENLQTKK 609
            TKIP G S S ITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRK+ P   GKE LQ+KK
Sbjct: 121  TKIPSGDS-STITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSEPPVPGKEILQSKK 179

Query: 608  DRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWIMDSRDEYTKERLDAIC 429
            DRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWI DSRDEYTKERL+AI 
Sbjct: 180  DRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLEAIN 239

Query: 428  DEFKLYRCHTILNCARACPKGLNPGKQINNIKKLQI 321
            DEFKLYRCHTILNCARACPKGLNPGKQI +IK LQ+
Sbjct: 240  DEFKLYRCHTILNCARACPKGLNPGKQIQHIKSLQL 275


>ref|XP_002526944.1| succinate dehydrogenase, putative [Ricinus communis]
            gi|223533696|gb|EEF35431.1| succinate dehydrogenase,
            putative [Ricinus communis]
          Length = 284

 Score =  473 bits (1218), Expect = e-130
 Identities = 232/280 (82%), Positives = 250/280 (89%), Gaps = 6/280 (2%)
 Frame = -3

Query: 1142 MATGLVRRVM--ARVQSSP--ASKLIIARAHASEVDAQKREPKARSTSTLKTFQIYRWNP 975
            MATGL+R+ +  ARV  +    S+LI  R HASE +AQK EPKA ST++LKTFQIYRWNP
Sbjct: 1    MATGLLRKGLSIARVSKTAPFTSRLIPTRFHASEAEAQKVEPKASSTASLKTFQIYRWNP 60

Query: 974  DNPTKPELKDYQIDLKDCGPMVLDALIKIKNE-DPTLTFRRSCREGICGSCAMNIDGCNG 798
            DNP+KP L+DY+IDLK+CGPMVLDALIKIKNE DPTLTFRRSCREGICGSCAMNIDGCNG
Sbjct: 61   DNPSKPTLQDYKIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNG 120

Query: 797  LACLTKIPDGSSASMITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKTPSK-DGKENL 621
            LACLTKI  GS++S ITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRK P   DGKE  
Sbjct: 121  LACLTKISSGSTSSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPVDGKEIP 180

Query: 620  QTKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWIMDSRDEYTKERL 441
            Q+KKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWI DSRDEYT ERL
Sbjct: 181  QSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTNERL 240

Query: 440  DAICDEFKLYRCHTILNCARACPKGLNPGKQINNIKKLQI 321
            DAI DEFKLYRCHTILNCARACPKGLNPGKQI +IK+LQ+
Sbjct: 241  DAINDEFKLYRCHTILNCARACPKGLNPGKQIMHIKQLQM 280


>gb|AFK34767.1| unknown [Medicago truncatula]
          Length = 278

 Score =  471 bits (1211), Expect = e-130
 Identities = 222/275 (80%), Positives = 246/275 (89%), Gaps = 2/275 (0%)
 Frame = -3

Query: 1142 MATGLVRRVMARVQSSPASKLIIARAHASEVDAQKREPKARSTSTLKTFQIYRWNPDNPT 963
            MA+ +++R + R+ SSP S+L + RAHASE  AQ+  PKAR T+ LK FQIYRWNPD P+
Sbjct: 1    MASTMLKRAIHRISSSPTSRLTLLRAHASEAQAQQASPKARDTTVLKKFQIYRWNPDTPS 60

Query: 962  KPELKDYQIDLKDCGPMVLDALIKIKNE-DPTLTFRRSCREGICGSCAMNIDGCNGLACL 786
            KPELK+ +I+LK+CGPMVLDALIKIKN+ DP+LTFRRSCREGICGSCAMNIDGCNGLACL
Sbjct: 61   KPELKECEINLKECGPMVLDALIKIKNDIDPSLTFRRSCREGICGSCAMNIDGCNGLACL 120

Query: 785  TKIPDGSSASMITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKTPSK-DGKENLQTKK 609
            TKIPD    S ITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRK+P++ DGKE  Q+KK
Sbjct: 121  TKIPDAGMDSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSPAEEDGKEIKQSKK 180

Query: 608  DRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWIMDSRDEYTKERLDAIC 429
            DRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWI DSRDEYTKERL+AI 
Sbjct: 181  DRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLEAIN 240

Query: 428  DEFKLYRCHTILNCARACPKGLNPGKQINNIKKLQ 324
            DEFKLYRCHTILNCARACP+GLNPGKQI +IK LQ
Sbjct: 241  DEFKLYRCHTILNCARACPEGLNPGKQIAHIKSLQ 275


Top