BLASTX nr result

ID: Panax21_contig00003588 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00003588
         (1227 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002532456.1| RNA binding protein, putative [Ricinus commu...   115   2e-23
emb|CAN83525.1| hypothetical protein VITISV_030230 [Vitis vinifera]   114   4e-23
ref|XP_002280511.1| PREDICTED: uncharacterized protein LOC100244...   114   7e-23
ref|XP_002328215.1| predicted protein [Populus trichocarpa] gi|2...   112   3e-22
ref|XP_002531056.1| conserved hypothetical protein [Ricinus comm...   111   3e-22

>ref|XP_002532456.1| RNA binding protein, putative [Ricinus communis]
            gi|223527846|gb|EEF29942.1| RNA binding protein, putative
            [Ricinus communis]
          Length = 221

 Score =  115 bits (289), Expect = 2e-23
 Identities = 57/85 (67%), Positives = 68/85 (80%), Gaps = 7/85 (8%)
 Frame = +3

Query: 993  SGPRELGGSVDLINYFKLWPHHEFFCKRSMP-------YLHNVVGVTKIKKGEGMELDQL 1151
            SGPREL G+VDLI++FKL PHHEFFCKRS+P       YLHNVVG ++I+KG+GM+LDQL
Sbjct: 10   SGPRELTGAVDLISHFKLVPHHEFFCKRSLPLSISDTHYLHNVVGDSEIRKGDGMQLDQL 69

Query: 1152 FQNTSYVEKKHARIHPFDLCVLKEA 1226
             QNTSY    +ARI PFDL VL+EA
Sbjct: 70   IQNTSYSRDSNARIQPFDLDVLREA 94


>emb|CAN83525.1| hypothetical protein VITISV_030230 [Vitis vinifera]
          Length = 316

 Score =  114 bits (286), Expect = 4e-23
 Identities = 54/84 (64%), Positives = 68/84 (80%), Gaps = 7/84 (8%)
 Frame = +3

Query: 996  GPRELGGSVDLINYFKLWPHHEFFCKRSMP-------YLHNVVGVTKIKKGEGMELDQLF 1154
            GPREL G+VDLIN++KL PHHEFFCKRS+P       YL +VVG T+I+KGEGMELDQLF
Sbjct: 49   GPRELSGAVDLINHYKLLPHHEFFCKRSLPLSISETHYLRSVVGXTEIRKGEGMELDQLF 108

Query: 1155 QNTSYVEKKHARIHPFDLCVLKEA 1226
             +T Y+ +++A IHPFDL +L+EA
Sbjct: 109  HSTFYLRERNAGIHPFDLDILREA 132


>ref|XP_002280511.1| PREDICTED: uncharacterized protein LOC100244629 [Vitis vinifera]
            gi|297740784|emb|CBI30966.3| unnamed protein product
            [Vitis vinifera]
          Length = 210

 Score =  114 bits (284), Expect = 7e-23
 Identities = 54/84 (64%), Positives = 68/84 (80%), Gaps = 7/84 (8%)
 Frame = +3

Query: 996  GPRELGGSVDLINYFKLWPHHEFFCKRSMP-------YLHNVVGVTKIKKGEGMELDQLF 1154
            GPREL G+VDLIN++KL PHHEFFCKRS+P       YL +VVG T+I+KGEGMELDQLF
Sbjct: 11   GPRELSGAVDLINHYKLLPHHEFFCKRSLPLSISETHYLRSVVGGTEIRKGEGMELDQLF 70

Query: 1155 QNTSYVEKKHARIHPFDLCVLKEA 1226
             +T Y+ +++A IHPFDL +L+EA
Sbjct: 71   HSTFYLRERNAGIHPFDLDILREA 94


>ref|XP_002328215.1| predicted protein [Populus trichocarpa] gi|222837730|gb|EEE76095.1|
            predicted protein [Populus trichocarpa]
          Length = 220

 Score =  112 bits (279), Expect = 3e-22
 Identities = 58/86 (67%), Positives = 67/86 (77%), Gaps = 7/86 (8%)
 Frame = +3

Query: 990  TSGPRELGGSVDLINYFKLWPHHEFFCKRSMP-------YLHNVVGVTKIKKGEGMELDQ 1148
            TSGPREL G+VDLI++FKL PHHEFFCKRS+P       YLHNVVG T+I+KGEGM+LDQ
Sbjct: 8    TSGPRELTGAVDLISHFKLLPHHEFFCKRSLPLSIADTHYLHNVVGDTEIRKGEGMQLDQ 67

Query: 1149 LFQNTSYVEKKHARIHPFDLCVLKEA 1226
            L QNTS     +A I PFDL VL+EA
Sbjct: 68   LIQNTS--RDSNAHIEPFDLDVLREA 91


>ref|XP_002531056.1| conserved hypothetical protein [Ricinus communis]
            gi|223529351|gb|EEF31317.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 292

 Score =  111 bits (278), Expect = 3e-22
 Identities = 54/84 (64%), Positives = 64/84 (76%), Gaps = 7/84 (8%)
 Frame = +3

Query: 996  GPRELGGSVDLINYFKLWPHHEFFCKRSMP-------YLHNVVGVTKIKKGEGMELDQLF 1154
            G +EL G+VDL+N FKLWPHHEFFCKRS+P       Y+ NVVG T+I+KGEGMELDQLF
Sbjct: 138  GLKELCGAVDLVNQFKLWPHHEFFCKRSLPLSVSQTHYIQNVVGDTEIRKGEGMELDQLF 197

Query: 1155 QNTSYVEKKHARIHPFDLCVLKEA 1226
             NT Y+ +  A IH FDL VL+EA
Sbjct: 198  HNTPYMRQGKAHIHTFDLGVLREA 221


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