BLASTX nr result

ID: Panax21_contig00002034 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00002034
         (555 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC13628.1| similar to ATP-dependent RNA helicases [Arabidops...   308   3e-82
ref|XP_002875020.1| hypothetical protein ARALYDRAFT_490504 [Arab...   308   3e-82
dbj|BAH19526.1| AT4G00660 [Arabidopsis thaliana]                      308   3e-82
ref|NP_191975.2| DEAD-box ATP-dependent RNA helicase 8 [Arabidop...   308   3e-82
ref|XP_002320116.1| predicted protein [Populus trichocarpa] gi|2...   307   6e-82

>gb|AAC13628.1| similar to ATP-dependent RNA helicases [Arabidopsis thaliana]
           gi|7267405|emb|CAB80875.1| putative RNA helicase
           [Arabidopsis thaliana]
          Length = 499

 Score =  308 bits (790), Expect = 3e-82
 Identities = 148/149 (99%), Positives = 149/149 (100%)
 Frame = -3

Query: 553 HCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN 374
           HCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN
Sbjct: 351 HCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN 410

Query: 373 GACRNLVCTDLFTRGIDIQAVNVVINFDFPKSAETYLHRVGRSGRFGHLGLAVNLITYED 194
           GACRNLVCTDLFTRGIDIQAVNVVINFDFPK+AETYLHRVGRSGRFGHLGLAVNLITYED
Sbjct: 411 GACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYED 470

Query: 193 RFNLYRIEQELGTEIKQIPPHIDQAIYCQ 107
           RFNLYRIEQELGTEIKQIPPHIDQAIYCQ
Sbjct: 471 RFNLYRIEQELGTEIKQIPPHIDQAIYCQ 499


>ref|XP_002875020.1| hypothetical protein ARALYDRAFT_490504 [Arabidopsis lyrata subsp.
           lyrata] gi|297320857|gb|EFH51279.1| hypothetical protein
           ARALYDRAFT_490504 [Arabidopsis lyrata subsp. lyrata]
          Length = 507

 Score =  308 bits (790), Expect = 3e-82
 Identities = 148/149 (99%), Positives = 149/149 (100%)
 Frame = -3

Query: 553 HCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN 374
           HCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN
Sbjct: 359 HCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN 418

Query: 373 GACRNLVCTDLFTRGIDIQAVNVVINFDFPKSAETYLHRVGRSGRFGHLGLAVNLITYED 194
           GACRNLVCTDLFTRGIDIQAVNVVINFDFPK+AETYLHRVGRSGRFGHLGLAVNLITYED
Sbjct: 419 GACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYED 478

Query: 193 RFNLYRIEQELGTEIKQIPPHIDQAIYCQ 107
           RFNLYRIEQELGTEIKQIPPHIDQAIYCQ
Sbjct: 479 RFNLYRIEQELGTEIKQIPPHIDQAIYCQ 507


>dbj|BAH19526.1| AT4G00660 [Arabidopsis thaliana]
          Length = 374

 Score =  308 bits (790), Expect = 3e-82
 Identities = 148/149 (99%), Positives = 149/149 (100%)
 Frame = -3

Query: 553 HCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN 374
           HCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN
Sbjct: 226 HCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN 285

Query: 373 GACRNLVCTDLFTRGIDIQAVNVVINFDFPKSAETYLHRVGRSGRFGHLGLAVNLITYED 194
           GACRNLVCTDLFTRGIDIQAVNVVINFDFPK+AETYLHRVGRSGRFGHLGLAVNLITYED
Sbjct: 286 GACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYED 345

Query: 193 RFNLYRIEQELGTEIKQIPPHIDQAIYCQ 107
           RFNLYRIEQELGTEIKQIPPHIDQAIYCQ
Sbjct: 346 RFNLYRIEQELGTEIKQIPPHIDQAIYCQ 374


>ref|NP_191975.2| DEAD-box ATP-dependent RNA helicase 8 [Arabidopsis thaliana]
           gi|30678703|ref|NP_849535.1| DEAD-box ATP-dependent RNA
           helicase 8 [Arabidopsis thaliana]
           gi|75330763|sp|Q8RXK6.1|RH8_ARATH RecName: Full=DEAD-box
           ATP-dependent RNA helicase 8 gi|19423939|gb|AAL87312.1|
           putative RNA helicase [Arabidopsis thaliana]
           gi|21280839|gb|AAM45033.1| putative RNA helicase
           [Arabidopsis thaliana] gi|332656515|gb|AEE81915.1|
           DEAD-box ATP-dependent RNA helicase 8 [Arabidopsis
           thaliana] gi|332656516|gb|AEE81916.1| DEAD-box
           ATP-dependent RNA helicase 8 [Arabidopsis thaliana]
          Length = 505

 Score =  308 bits (790), Expect = 3e-82
 Identities = 148/149 (99%), Positives = 149/149 (100%)
 Frame = -3

Query: 553 HCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN 374
           HCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN
Sbjct: 357 HCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN 416

Query: 373 GACRNLVCTDLFTRGIDIQAVNVVINFDFPKSAETYLHRVGRSGRFGHLGLAVNLITYED 194
           GACRNLVCTDLFTRGIDIQAVNVVINFDFPK+AETYLHRVGRSGRFGHLGLAVNLITYED
Sbjct: 417 GACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYED 476

Query: 193 RFNLYRIEQELGTEIKQIPPHIDQAIYCQ 107
           RFNLYRIEQELGTEIKQIPPHIDQAIYCQ
Sbjct: 477 RFNLYRIEQELGTEIKQIPPHIDQAIYCQ 505


>ref|XP_002320116.1| predicted protein [Populus trichocarpa] gi|222860889|gb|EEE98431.1|
           predicted protein [Populus trichocarpa]
          Length = 485

 Score =  307 bits (787), Expect = 6e-82
 Identities = 147/149 (98%), Positives = 149/149 (100%)
 Frame = -3

Query: 553 HCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN 374
           HCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN
Sbjct: 337 HCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN 396

Query: 373 GACRNLVCTDLFTRGIDIQAVNVVINFDFPKSAETYLHRVGRSGRFGHLGLAVNLITYED 194
           GACRNLVCTDLFTRGIDIQAVNVVINFDFPK++ETYLHRVGRSGRFGHLGLAVNLITYED
Sbjct: 397 GACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYED 456

Query: 193 RFNLYRIEQELGTEIKQIPPHIDQAIYCQ 107
           RFNLYRIEQELGTEIKQIPPHIDQAIYCQ
Sbjct: 457 RFNLYRIEQELGTEIKQIPPHIDQAIYCQ 485


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