BLASTX nr result

ID: Panax21_contig00001896 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00001896
         (613 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002300175.1| predicted protein [Populus trichocarpa] gi|2...   223   3e-56
ref|XP_002879409.1| hypothetical protein ARALYDRAFT_482209 [Arab...   216   2e-54
gb|AAP82172.1| 26S proteasome subunit RPN2A [synthetic construct]     215   4e-54
dbj|BAD93983.1| 26S proteasome regulatory subunit [Arabidopsis t...   215   4e-54
gb|AAP86657.1| 26S proteasome subunit RPN2a [Arabidopsis thaliana]    215   4e-54

>ref|XP_002300175.1| predicted protein [Populus trichocarpa] gi|222847433|gb|EEE84980.1|
            predicted protein [Populus trichocarpa]
          Length = 1004

 Score =  223 bits (567), Expect = 3e-56
 Identities = 123/205 (60%), Positives = 136/205 (66%), Gaps = 5/205 (2%)
 Frame = +1

Query: 1    KHDKITAVVGLAVFSQFWYWYPLIYFISLSFSPTALIGLNYDLKVPRFEFVSHAKPSLFE 180
            KHDKITAVVGLAVFSQFWYWYPLIYFISL+FSPTA IGLNYDLKVP+FEFVS+AKPSLFE
Sbjct: 767  KHDKITAVVGLAVFSQFWYWYPLIYFISLAFSPTAFIGLNYDLKVPKFEFVSNAKPSLFE 826

Query: 181  YXXXXXXXXXXXXXXXXXXXLSTXXXXXXXXXXXEADQKAIA-----XXXXXXXXXXXXX 345
            Y                   LST           EADQKA A                  
Sbjct: 827  YPKPTTVPTATSAVKLPAAVLST-SVKAKARAKKEADQKATAEKAAGVESSPASTSAGKG 885

Query: 346  XXXXXXXXXXMQVDNPVEKKAEPEPSFEILTNPARVVPAQEKFIQFLEESRYTPIKSATS 525
                      MQVD   EKKAEPEPS EILTNPARVVPAQEKFI+F+E+SRY P+KSA S
Sbjct: 886  KAPSEKDGDAMQVDGQPEKKAEPEPSHEILTNPARVVPAQEKFIKFMEDSRYVPVKSAPS 945

Query: 526  GFVLLKDLRPAMPEVLSLSDAPTAS 600
            GFVLL+DL+P  PEVLSL+D P+++
Sbjct: 946  GFVLLRDLQPTEPEVLSLTDTPSSA 970


>ref|XP_002879409.1| hypothetical protein ARALYDRAFT_482209 [Arabidopsis lyrata subsp.
            lyrata] gi|297325248|gb|EFH55668.1| hypothetical protein
            ARALYDRAFT_482209 [Arabidopsis lyrata subsp. lyrata]
          Length = 1002

 Score =  216 bits (551), Expect = 2e-54
 Identities = 123/208 (59%), Positives = 138/208 (66%), Gaps = 8/208 (3%)
 Frame = +1

Query: 1    KHDKITAVVGLAVFSQFWYWYPLIYFISLSFSPTALIGLNYDLKVPRFEFVSHAKPSLFE 180
            KHDK+TAV+GLAVFSQFWYWYPLIYFISL+FSPTA IGLNYDLKVP+FEF+SHAKPSLFE
Sbjct: 763  KHDKVTAVIGLAVFSQFWYWYPLIYFISLAFSPTAFIGLNYDLKVPKFEFMSHAKPSLFE 822

Query: 181  YXXXXXXXXXXXXXXXXXXXLSTXXXXXXXXXXXEADQKAIA-----XXXXXXXXXXXXX 345
            Y                   LST           EA+QKAIA                  
Sbjct: 823  YPKPTTVPTANTAVKLPTAVLST-SVKAKARAKKEAEQKAIAEKTSGPEKPVNESGSGKG 881

Query: 346  XXXXXXXXXXMQVDNP--VEKK-AEPEPSFEILTNPARVVPAQEKFIQFLEESRYTPIKS 516
                      MQVD+P  VEKK AEPEP+FEIL NPARVVPAQEK+I+ LE+SRY P+K 
Sbjct: 882  KASTEKEGDSMQVDSPAAVEKKAAEPEPAFEILVNPARVVPAQEKYIKLLEDSRYVPVKL 941

Query: 517  ATSGFVLLKDLRPAMPEVLSLSDAPTAS 600
            A SGFVLLKDLR   PEVLSL+DAPT++
Sbjct: 942  APSGFVLLKDLRQHEPEVLSLTDAPTST 969


>gb|AAP82172.1| 26S proteasome subunit RPN2A [synthetic construct]
          Length = 1000

 Score =  215 bits (548), Expect = 4e-54
 Identities = 122/208 (58%), Positives = 138/208 (66%), Gaps = 8/208 (3%)
 Frame = +1

Query: 1    KHDKITAVVGLAVFSQFWYWYPLIYFISLSFSPTALIGLNYDLKVPRFEFVSHAKPSLFE 180
            KHDK+TAV+GLAVFSQFWYWYPLIYFISL+FSPTA IGLNYDLKVP+FEF+SHAKPSLFE
Sbjct: 762  KHDKVTAVIGLAVFSQFWYWYPLIYFISLAFSPTAFIGLNYDLKVPKFEFMSHAKPSLFE 821

Query: 181  YXXXXXXXXXXXXXXXXXXXLSTXXXXXXXXXXXEADQKAIA-----XXXXXXXXXXXXX 345
            Y                   LST           EA+QKAIA                  
Sbjct: 822  YPKPTTVPTANTAVKLPTAVLST-SVKAKARAKKEAEQKAIAEKTSGPEKPVNESGSGKG 880

Query: 346  XXXXXXXXXXMQVDNP--VEKKA-EPEPSFEILTNPARVVPAQEKFIQFLEESRYTPIKS 516
                      MQVD+P  VEKKA EPEP+FEIL NPARVVPAQEK+I+ L++SRY P+K 
Sbjct: 881  KASTEKEGDSMQVDSPAAVEKKAPEPEPAFEILVNPARVVPAQEKYIKLLDDSRYVPVKL 940

Query: 517  ATSGFVLLKDLRPAMPEVLSLSDAPTAS 600
            A SGFVLLKDLR   PEVLSL+DAPT++
Sbjct: 941  APSGFVLLKDLREHEPEVLSLTDAPTST 968


>dbj|BAD93983.1| 26S proteasome regulatory subunit [Arabidopsis thaliana]
          Length = 265

 Score =  215 bits (548), Expect = 4e-54
 Identities = 122/208 (58%), Positives = 138/208 (66%), Gaps = 8/208 (3%)
 Frame = +1

Query: 1   KHDKITAVVGLAVFSQFWYWYPLIYFISLSFSPTALIGLNYDLKVPRFEFVSHAKPSLFE 180
           KHDK+TAV+GLAVFSQFWYWYPLIYFISL+FSPTA IGLNYDLKVP+FEF+SHAKPSLFE
Sbjct: 24  KHDKVTAVIGLAVFSQFWYWYPLIYFISLAFSPTAFIGLNYDLKVPKFEFMSHAKPSLFE 83

Query: 181 YXXXXXXXXXXXXXXXXXXXLSTXXXXXXXXXXXEADQKAIA-----XXXXXXXXXXXXX 345
           Y                   LST           EA+QKAIA                  
Sbjct: 84  YPKPTTVPTANTAVKLPTAVLST-SVKAKARAKKEAEQKAIAEKTSGPEKPVNESGSGKG 142

Query: 346 XXXXXXXXXXMQVDNP--VEKKA-EPEPSFEILTNPARVVPAQEKFIQFLEESRYTPIKS 516
                     MQVD+P  VEKKA EPEP+FEIL NPARVVPAQEK+I+ L++SRY P+K 
Sbjct: 143 KASTEKEGDSMQVDSPAAVEKKAPEPEPAFEILVNPARVVPAQEKYIKLLDDSRYVPVKL 202

Query: 517 ATSGFVLLKDLRPAMPEVLSLSDAPTAS 600
           A SGFVLLKDLR   PEVLSL+DAPT++
Sbjct: 203 APSGFVLLKDLREHEPEVLSLTDAPTST 230


>gb|AAP86657.1| 26S proteasome subunit RPN2a [Arabidopsis thaliana]
          Length = 1004

 Score =  215 bits (548), Expect = 4e-54
 Identities = 122/208 (58%), Positives = 138/208 (66%), Gaps = 8/208 (3%)
 Frame = +1

Query: 1    KHDKITAVVGLAVFSQFWYWYPLIYFISLSFSPTALIGLNYDLKVPRFEFVSHAKPSLFE 180
            KHDK+TAV+GLAVFSQFWYWYPLIYFISL+FSPTA IGLNYDLKVP+FEF+SHAKPSLFE
Sbjct: 763  KHDKVTAVIGLAVFSQFWYWYPLIYFISLAFSPTAFIGLNYDLKVPKFEFMSHAKPSLFE 822

Query: 181  YXXXXXXXXXXXXXXXXXXXLSTXXXXXXXXXXXEADQKAIA-----XXXXXXXXXXXXX 345
            Y                   LST           EA+QKAIA                  
Sbjct: 823  YPKPTTVPIANTAVKLPTAVLST-SVKAKARAKKEAEQKAIAEKTSGPEKPVNESGSGKG 881

Query: 346  XXXXXXXXXXMQVDNP--VEKKA-EPEPSFEILTNPARVVPAQEKFIQFLEESRYTPIKS 516
                      MQVD+P  VEKKA EPEP+FEIL NPARVVPAQEK+I+ L++SRY P+K 
Sbjct: 882  KASTEKEGDSMQVDSPAAVEKKAPEPEPAFEILVNPARVVPAQEKYIKLLDDSRYVPVKL 941

Query: 517  ATSGFVLLKDLRPAMPEVLSLSDAPTAS 600
            A SGFVLLKDLR   PEVLSL+DAPT++
Sbjct: 942  APSGFVLLKDLREHEPEVLSLTDAPTST 969


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