BLASTX nr result
ID: Panax21_contig00001717
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax21_contig00001717
(1710 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002285479.1| PREDICTED: uncharacterized RNA-binding prote... 340 7e-91
emb|CBI16387.3| unnamed protein product [Vitis vinifera] 324 4e-86
ref|XP_003632115.1| PREDICTED: uncharacterized RNA-binding prote... 320 1e-84
ref|XP_002513488.1| nuclear acid binding protein, putative [Rici... 290 6e-76
ref|XP_002313332.1| predicted protein [Populus trichocarpa] gi|2... 284 6e-74
>ref|XP_002285479.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like isoform
1 [Vitis vinifera]
Length = 447
Score = 340 bits (872), Expect = 7e-91
Identities = 176/256 (68%), Positives = 191/256 (74%), Gaps = 2/256 (0%)
Frame = -3
Query: 1030 AMTEMNGFYCSTRPMRISAATPKKTTGLQQQYAGT-KGVYSTPVYT-PAVQTIPVDNDIN 857
AMTEMNG YCSTRPMRISAATPKKTTG QQQYA K +Y P YT P +Q +P DNDIN
Sbjct: 192 AMTEMNGVYCSTRPMRISAATPKKTTGFQQQYAAAAKALYPAPAYTTPPLQALPADNDIN 251
Query: 856 NTTIFIGNLDPNVTEEELRQIFVQLGEIVYVKIPATRGCGFVQFVARSSAEEAIQRMQGT 677
NTTIF+GNLDPNVTEEEL+QIF Q GE+VYVKIPA RGCGFVQF R+SAEEAIQRMQGT
Sbjct: 252 NTTIFVGNLDPNVTEEELKQIFSQFGELVYVKIPAGRGCGFVQFGTRTSAEEAIQRMQGT 311
Query: 676 VIGQQVVRISWGRSPTSKQDQPGVWGAQADPXXXXXXXXXXXXXYDPYAYGASHDXXXXX 497
VIGQ VVRISWGRSPT+KQD PG WG QADP YD Y YGA+ D
Sbjct: 312 VIGQLVVRISWGRSPTAKQDLPGSWGQQADPSQWSSAYYGYGQGYDAYPYGATQDPSLYA 371
Query: 496 XXXXXXXXXXXXXAEGIQDVGAMAGSVPDVEQREELYDPLATPDVDKLNTAYLAVHGSAI 317
AEG+QD+ AMAG+VP VEQR+ELYDPLATPDVDKLN AYLAVHGSAI
Sbjct: 372 YGAYAGYLQYPQQAEGVQDLAAMAGAVPAVEQRDELYDPLATPDVDKLNAAYLAVHGSAI 431
Query: 316 LGRPMWQRTSTLLQQA 269
LGR +W +TS Q A
Sbjct: 432 LGRSLWLKTSPFSQMA 447
Score = 124 bits (310), Expect(2) = 5e-44
Identities = 56/67 (83%), Positives = 60/67 (89%)
Frame = -2
Query: 1391 VIRNKITSQPEGYGFVEFSSHATAERILHSYNGAQIPGTELTFRLNWASFGVGERRPDTG 1212
+IRNKIT QPEGYGFVEF SHA AERIL +YNG Q+PGTE TFRLNWASFG+GERRPD G
Sbjct: 72 IIRNKITGQPEGYGFVEFVSHAAAERILQAYNGTQMPGTEQTFRLNWASFGIGERRPDAG 131
Query: 1211 PEHSIFV 1191
PEHSIFV
Sbjct: 132 PEHSIFV 138
Score = 82.4 bits (202), Expect(2) = 5e-44
Identities = 42/73 (57%), Positives = 54/73 (73%), Gaps = 4/73 (5%)
Frame = -3
Query: 1660 EMEAQQQ----HPSAAISTAAAVTYSTSQPYHQPATLEEVRTLWIGDLPYWADESYLNSW 1493
E +A QQ HPS A S A + +++QPY QP ++EEVRTLWIGDL YW DE+YL+S
Sbjct: 2 EAQAHQQQQWMHPSHA-SAATVSSMASAQPYTQPTSVEEVRTLWIGDLQYWVDENYLHSC 60
Query: 1492 FAPSGEVLSIKVI 1454
FA +GEV+SIK+I
Sbjct: 61 FAHTGEVISIKII 73
>emb|CBI16387.3| unnamed protein product [Vitis vinifera]
Length = 445
Score = 324 bits (831), Expect = 4e-86
Identities = 171/256 (66%), Positives = 186/256 (72%), Gaps = 2/256 (0%)
Frame = -3
Query: 1030 AMTEMNGFYCSTRPMRISAATPKKTTGLQQQYAGT-KGVYSTPVYT-PAVQTIPVDNDIN 857
AMTEMNG YCSTRPMRISAATPKKTTG QQQYA K +Y P YT P +Q +P DNDIN
Sbjct: 192 AMTEMNGVYCSTRPMRISAATPKKTTGFQQQYAAAAKALYPAPAYTTPPLQALPADNDIN 251
Query: 856 NTTIFIGNLDPNVTEEELRQIFVQLGEIVYVKIPATRGCGFVQFVARSSAEEAIQRMQGT 677
NTTIF+GNLDPNVTEEEL+QIF Q GE+VYVKIPA RGCGFVQF R+SAEEAIQRMQGT
Sbjct: 252 NTTIFVGNLDPNVTEEELKQIFSQFGELVYVKIPAGRGCGFVQFGTRTSAEEAIQRMQGT 311
Query: 676 VIGQQVVRISWGRSPTSKQDQPGVWGAQADPXXXXXXXXXXXXXYDPYAYGASHDXXXXX 497
VIGQ VVRISWGRSPT+KQD PG WG QADP YD Y YGA+ D
Sbjct: 312 VIGQLVVRISWGRSPTAKQDLPGSWGQQADPSQWSSAYYGYGQGYDAYPYGATQD--PSL 369
Query: 496 XXXXXXXXXXXXXAEGIQDVGAMAGSVPDVEQREELYDPLATPDVDKLNTAYLAVHGSAI 317
+ + AMAG+VP VEQR+ELYDPLATPDVDKLN AYLAVHGSAI
Sbjct: 370 YAYGAYAGYLQYPQQARYYLAAMAGAVPAVEQRDELYDPLATPDVDKLNAAYLAVHGSAI 429
Query: 316 LGRPMWQRTSTLLQQA 269
LGR +W +TS Q A
Sbjct: 430 LGRSLWLKTSPFSQMA 445
Score = 124 bits (310), Expect(2) = 5e-44
Identities = 56/67 (83%), Positives = 60/67 (89%)
Frame = -2
Query: 1391 VIRNKITSQPEGYGFVEFSSHATAERILHSYNGAQIPGTELTFRLNWASFGVGERRPDTG 1212
+IRNKIT QPEGYGFVEF SHA AERIL +YNG Q+PGTE TFRLNWASFG+GERRPD G
Sbjct: 72 IIRNKITGQPEGYGFVEFVSHAAAERILQAYNGTQMPGTEQTFRLNWASFGIGERRPDAG 131
Query: 1211 PEHSIFV 1191
PEHSIFV
Sbjct: 132 PEHSIFV 138
Score = 82.4 bits (202), Expect(2) = 5e-44
Identities = 42/73 (57%), Positives = 54/73 (73%), Gaps = 4/73 (5%)
Frame = -3
Query: 1660 EMEAQQQ----HPSAAISTAAAVTYSTSQPYHQPATLEEVRTLWIGDLPYWADESYLNSW 1493
E +A QQ HPS A S A + +++QPY QP ++EEVRTLWIGDL YW DE+YL+S
Sbjct: 2 EAQAHQQQQWMHPSHA-SAATVSSMASAQPYTQPTSVEEVRTLWIGDLQYWVDENYLHSC 60
Query: 1492 FAPSGEVLSIKVI 1454
FA +GEV+SIK+I
Sbjct: 61 FAHTGEVISIKII 73
>ref|XP_003632115.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like isoform
2 [Vitis vinifera]
Length = 438
Score = 320 bits (819), Expect = 1e-84
Identities = 169/256 (66%), Positives = 185/256 (72%), Gaps = 2/256 (0%)
Frame = -3
Query: 1030 AMTEMNGFYCSTRPMRISAATPKKTTGLQQQYAGT-KGVYSTPVYT-PAVQTIPVDNDIN 857
AMTEMNG YCSTRPMRISAATPKKTTG QQQYA K +Y P YT P +Q +P DNDIN
Sbjct: 192 AMTEMNGVYCSTRPMRISAATPKKTTGFQQQYAAAAKALYPAPAYTTPPLQALPADNDIN 251
Query: 856 NTTIFIGNLDPNVTEEELRQIFVQLGEIVYVKIPATRGCGFVQFVARSSAEEAIQRMQGT 677
NTTIF+GNLDPNVTEEEL+QIF Q GE+VYVKIPA RGCGFVQF R+SAEEAIQRMQGT
Sbjct: 252 NTTIFVGNLDPNVTEEELKQIFSQFGELVYVKIPAGRGCGFVQFGTRTSAEEAIQRMQGT 311
Query: 676 VIGQQVVRISWGRSPTSKQDQPGVWGAQADPXXXXXXXXXXXXXYDPYAYGASHDXXXXX 497
VIGQ VVRISWGRSPT+KQ P W + YD Y YGA+ D
Sbjct: 312 VIGQLVVRISWGRSPTAKQADPSQWSS---------AYYGYGQGYDAYPYGATQDPSLYA 362
Query: 496 XXXXXXXXXXXXXAEGIQDVGAMAGSVPDVEQREELYDPLATPDVDKLNTAYLAVHGSAI 317
AEG+QD+ AMAG+VP VEQR+ELYDPLATPDVDKLN AYLAVHGSAI
Sbjct: 363 YGAYAGYLQYPQQAEGVQDLAAMAGAVPAVEQRDELYDPLATPDVDKLNAAYLAVHGSAI 422
Query: 316 LGRPMWQRTSTLLQQA 269
LGR +W +TS Q A
Sbjct: 423 LGRSLWLKTSPFSQMA 438
Score = 124 bits (310), Expect(2) = 5e-44
Identities = 56/67 (83%), Positives = 60/67 (89%)
Frame = -2
Query: 1391 VIRNKITSQPEGYGFVEFSSHATAERILHSYNGAQIPGTELTFRLNWASFGVGERRPDTG 1212
+IRNKIT QPEGYGFVEF SHA AERIL +YNG Q+PGTE TFRLNWASFG+GERRPD G
Sbjct: 72 IIRNKITGQPEGYGFVEFVSHAAAERILQAYNGTQMPGTEQTFRLNWASFGIGERRPDAG 131
Query: 1211 PEHSIFV 1191
PEHSIFV
Sbjct: 132 PEHSIFV 138
Score = 82.4 bits (202), Expect(2) = 5e-44
Identities = 42/73 (57%), Positives = 54/73 (73%), Gaps = 4/73 (5%)
Frame = -3
Query: 1660 EMEAQQQ----HPSAAISTAAAVTYSTSQPYHQPATLEEVRTLWIGDLPYWADESYLNSW 1493
E +A QQ HPS A S A + +++QPY QP ++EEVRTLWIGDL YW DE+YL+S
Sbjct: 2 EAQAHQQQQWMHPSHA-SAATVSSMASAQPYTQPTSVEEVRTLWIGDLQYWVDENYLHSC 60
Query: 1492 FAPSGEVLSIKVI 1454
FA +GEV+SIK+I
Sbjct: 61 FAHTGEVISIKII 73
>ref|XP_002513488.1| nuclear acid binding protein, putative [Ricinus communis]
gi|223547396|gb|EEF48891.1| nuclear acid binding protein,
putative [Ricinus communis]
Length = 412
Score = 290 bits (743), Expect = 6e-76
Identities = 156/254 (61%), Positives = 171/254 (67%)
Frame = -3
Query: 1030 AMTEMNGFYCSTRPMRISAATPKKTTGLQQQYAGTKGVYSTPVYTPAVQTIPVDNDINNT 851
AMTEMNG +CSTRPMRISAATPKKT QQQYA K +Y P YT VQ +P DNDI NT
Sbjct: 173 AMTEMNGVFCSTRPMRISAATPKKTAAYQQQYATAKAIYPLPAYTAPVQVVPADNDITNT 232
Query: 850 TIFIGNLDPNVTEEELRQIFVQLGEIVYVKIPATRGCGFVQFVARSSAEEAIQRMQGTVI 671
TIF+GNLDPNVTEEELR IF+Q GEIVYVKIP RGCGFVQF R+SAEEAIQRMQG VI
Sbjct: 233 TIFVGNLDPNVTEEELRPIFLQFGEIVYVKIPVGRGCGFVQFATRASAEEAIQRMQGHVI 292
Query: 670 GQQVVRISWGRSPTSKQDQPGVWGAQADPXXXXXXXXXXXXXYDPYAYGASHDXXXXXXX 491
GQQ VRISWGR W A YD YAYGA+ D
Sbjct: 293 GQQPVRISWGRKQARSTLILDQWSA----------YYGYGQGYDAYAYGATQDPSLYAYG 342
Query: 490 XXXXXXXXXXXAEGIQDVGAMAGSVPDVEQREELYDPLATPDVDKLNTAYLAVHGSAILG 311
+G+QD M G++P VEQREELYDPLA PDVDKLN AYL+VHG+AILG
Sbjct: 343 AYAGYPQYPQQVDGVQD---MTGAIPVVEQREELYDPLAAPDVDKLNGAYLSVHGNAILG 399
Query: 310 RPMWQRTSTLLQQA 269
RP+W +TS L QQA
Sbjct: 400 RPLWMKTS-LSQQA 412
Score = 122 bits (306), Expect(2) = 9e-43
Identities = 55/67 (82%), Positives = 59/67 (88%)
Frame = -2
Query: 1391 VIRNKITSQPEGYGFVEFSSHATAERILHSYNGAQIPGTELTFRLNWASFGVGERRPDTG 1212
+IRNKIT QPEGYGFVEF SH AERIL +YNG Q+PGTE TFRLNWASFG+GERRPD G
Sbjct: 53 IIRNKITGQPEGYGFVEFVSHVAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAG 112
Query: 1211 PEHSIFV 1191
PEHSIFV
Sbjct: 113 PEHSIFV 119
Score = 79.7 bits (195), Expect(2) = 9e-43
Identities = 38/53 (71%), Positives = 43/53 (81%)
Frame = -3
Query: 1612 AAVTYSTSQPYHQPATLEEVRTLWIGDLPYWADESYLNSWFAPSGEVLSIKVI 1454
AA T + YHQPATLEEVRTLWIGDL YW DE+YL+S FA +GEVLSIK+I
Sbjct: 2 AAPTATNPGGYHQPATLEEVRTLWIGDLQYWVDENYLSSCFAHTGEVLSIKII 54
>ref|XP_002313332.1| predicted protein [Populus trichocarpa] gi|222849740|gb|EEE87287.1|
predicted protein [Populus trichocarpa]
Length = 415
Score = 284 bits (726), Expect = 6e-74
Identities = 152/254 (59%), Positives = 165/254 (64%)
Frame = -3
Query: 1030 AMTEMNGFYCSTRPMRISAATPKKTTGLQQQYAGTKGVYSTPVYTPAVQTIPVDNDINNT 851
AMTEMNG +CSTRPMRIS ATPKKTT QQQYA K Y P YT VQ + D D+ NT
Sbjct: 171 AMTEMNGVFCSTRPMRISMATPKKTTSFQQQYAVPKAFYPAPAYTAPVQVVSADGDVTNT 230
Query: 850 TIFIGNLDPNVTEEELRQIFVQLGEIVYVKIPATRGCGFVQFVARSSAEEAIQRMQGTVI 671
TIF+GNLDPN TEE+LRQ F+QLGEI VKIPA RGCGFVQF R+SAEEAIQRMQG VI
Sbjct: 231 TIFVGNLDPNATEEDLRQTFLQLGEIASVKIPAGRGCGFVQFATRTSAEEAIQRMQGHVI 290
Query: 670 GQQVVRISWGRSPTSKQDQPGVWGAQADPXXXXXXXXXXXXXYDPYAYGASHDXXXXXXX 491
GQQ VRISWG+ KQD WG Q D YD YAYG +HD
Sbjct: 291 GQQPVRISWGK----KQDLTATWGQQVD---QWNAYYGYGQGYDAYAYGGTHDPSLYAYN 343
Query: 490 XXXXXXXXXXXAEGIQDVGAMAGSVPDVEQREELYDPLATPDVDKLNTAYLAVHGSAILG 311
EG D MAG VP E REE YDPLA PDVDKLN AYL+ HGSAI G
Sbjct: 344 AYAGYPQYPQQVEGAPD---MAGVVPVAEHREESYDPLAAPDVDKLNAAYLSTHGSAIFG 400
Query: 310 RPMWQRTSTLLQQA 269
R +W +TS+L QQA
Sbjct: 401 RTLWMKTSSLTQQA 414
Score = 123 bits (308), Expect(2) = 9e-43
Identities = 55/67 (82%), Positives = 60/67 (89%)
Frame = -2
Query: 1391 VIRNKITSQPEGYGFVEFSSHATAERILHSYNGAQIPGTELTFRLNWASFGVGERRPDTG 1212
+IRNK+T QPEGYGFVEF SHA AERIL +YNG Q+PGTE TFRLNWASFG+GERRPD G
Sbjct: 51 IIRNKLTGQPEGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAG 110
Query: 1211 PEHSIFV 1191
PEHSIFV
Sbjct: 111 PEHSIFV 117
Score = 79.0 bits (193), Expect(2) = 9e-43
Identities = 36/43 (83%), Positives = 39/43 (90%)
Frame = -3
Query: 1582 YHQPATLEEVRTLWIGDLPYWADESYLNSWFAPSGEVLSIKVI 1454
YHQPATLEEVRTLWIGDL YWADESYL S FA +GEV+SIK+I
Sbjct: 10 YHQPATLEEVRTLWIGDLQYWADESYLTSCFAHTGEVVSIKII 52