BLASTX nr result

ID: Panax21_contig00001585 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00001585
         (436 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270073.1| PREDICTED: H/ACA ribonucleoprotein complex s...    70   2e-10
ref|XP_002308911.1| predicted protein [Populus trichocarpa] gi|2...    68   7e-10
ref|XP_003578695.1| PREDICTED: H/ACA ribonucleoprotein complex s...    67   1e-09
ref|NP_001060391.1| Os07g0636000 [Oryza sativa Japonica Group] g...    67   1e-09
ref|XP_002323264.1| predicted protein [Populus trichocarpa] gi|2...    67   1e-09

>ref|XP_002270073.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Vitis
           vinifera]
          Length = 586

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 30/39 (76%), Positives = 35/39 (89%)
 Frame = +3

Query: 3   KLDKNGKPNENTPAEWMRNVALPPGGDSMIASLAAVTEP 119
           KL+K+GKPNENTP+EW+RNV LP GGDSM+ASLAA  EP
Sbjct: 400 KLNKHGKPNENTPSEWLRNVVLPTGGDSMVASLAAAVEP 438


>ref|XP_002308911.1| predicted protein [Populus trichocarpa] gi|222854887|gb|EEE92434.1|
           predicted protein [Populus trichocarpa]
          Length = 593

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 31/41 (75%), Positives = 35/41 (85%), Gaps = 1/41 (2%)
 Frame = +3

Query: 3   KLDKNGKPNENTPAEWMRNVALPPGGDSMIASL-AAVTEPV 122
           KLDK+GKPNENTP EWMRN+ LPPGGDSM+A + AA  EPV
Sbjct: 396 KLDKHGKPNENTPHEWMRNLVLPPGGDSMVAGIAAAAAEPV 436


>ref|XP_003578695.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like
           [Brachypodium distachyon]
          Length = 584

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 30/42 (71%), Positives = 35/42 (83%)
 Frame = +3

Query: 6   LDKNGKPNENTPAEWMRNVALPPGGDSMIASLAAVTEPVSVR 131
           LDK+GKP E TPAEW+RNVALP GGD+MIAS+AA  EP  V+
Sbjct: 413 LDKHGKPTEKTPAEWLRNVALPTGGDAMIASIAAAPEPEKVK 454


>ref|NP_001060391.1| Os07g0636000 [Oryza sativa Japonica Group]
           gi|23237811|dbj|BAC16386.1| putative
           centromere/microtubule binding protein [Oryza sativa
           Japonica Group] gi|113611927|dbj|BAF22305.1|
           Os07g0636000 [Oryza sativa Japonica Group]
           gi|125559298|gb|EAZ04834.1| hypothetical protein
           OsI_27012 [Oryza sativa Indica Group]
           gi|125601221|gb|EAZ40797.1| hypothetical protein
           OsJ_25275 [Oryza sativa Japonica Group]
           gi|215734843|dbj|BAG95565.1| unnamed protein product
           [Oryza sativa Japonica Group]
          Length = 600

 Score = 67.0 bits (162), Expect = 1e-09
 Identities = 30/42 (71%), Positives = 35/42 (83%)
 Frame = +3

Query: 6   LDKNGKPNENTPAEWMRNVALPPGGDSMIASLAAVTEPVSVR 131
           LDK+GKPNE TPAEW+RNVALP GGD+MIAS+AA  E   V+
Sbjct: 412 LDKHGKPNEKTPAEWIRNVALPTGGDAMIASIAAAPEEAKVK 453


>ref|XP_002323264.1| predicted protein [Populus trichocarpa] gi|222867894|gb|EEF05025.1|
           predicted protein [Populus trichocarpa]
          Length = 482

 Score = 67.0 bits (162), Expect = 1e-09
 Identities = 29/40 (72%), Positives = 33/40 (82%)
 Frame = +3

Query: 3   KLDKNGKPNENTPAEWMRNVALPPGGDSMIASLAAVTEPV 122
           KLDK+GKPN+NTP EW RN+ LP GGDSM+A LAA  EPV
Sbjct: 384 KLDKHGKPNDNTPHEWARNLVLPAGGDSMVAGLAAAAEPV 423


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