BLASTX nr result
ID: Panax21_contig00001540
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax21_contig00001540
(1098 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002521945.1| Poly(rC)-binding protein, putative [Ricinus ... 199 1e-75
ref|XP_003521747.1| PREDICTED: KH domain-containing protein At4g... 189 4e-70
ref|XP_003554712.1| PREDICTED: insulin-like growth factor 2 mRNA... 185 4e-69
ref|XP_003554280.1| PREDICTED: KH domain-containing protein At4g... 171 2e-68
ref|XP_002319087.1| predicted protein [Populus trichocarpa] gi|2... 207 2e-67
>ref|XP_002521945.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223538749|gb|EEF40349.1| Poly(rC)-binding protein,
putative [Ricinus communis]
Length = 548
Score = 199 bits (505), Expect(2) = 1e-75
Identities = 104/161 (64%), Positives = 121/161 (75%), Gaps = 1/161 (0%)
Frame = -2
Query: 482 DTDPAHAPPGAGGTVTTRMLVAATQGGSLIGKQGATIKSIQDASNCTIRVLGGENLPFFA 303
D D +HA G G V+TR+LV A+Q GSLIGKQG T+KSIQ+AS+C +RVLG E+LP FA
Sbjct: 230 DGDSSHASSGTGTKVSTRLLVPASQAGSLIGKQGGTVKSIQEASSCVVRVLGAEDLPVFA 289
Query: 302 LPDDSVVEVQGEATGVHKAVELIATHLRKFLVDRSVIGIFEMKMQMPN-PQMEHMXXXXX 126
L DD VVEV G+A GVHKAVELIA+HLRKFLVDRS+I +FEM MQM N P MEHM
Sbjct: 290 LQDDRVVEVLGDAAGVHKAVELIASHLRKFLVDRSIIPLFEMHMQMQNPPHMEHM-PPHQ 348
Query: 125 XXXXPQAFAPNATRGPGYGANPHFMPLPRQLDNYYPQADMP 3
PQ PNA GPGYG NP +MP PRQ++NYYP AD+P
Sbjct: 349 SWGPPQGIPPNAGGGPGYG-NPQYMPPPRQIENYYPPADLP 388
Score = 112 bits (279), Expect(2) = 1e-75
Identities = 56/82 (68%), Positives = 63/82 (76%)
Frame = -1
Query: 846 IPENSHPPEIQGSENDSKDDGFVNDEEKKWPGWPGENVFRMLVPVHKVGSIIGRKGEYIK 667
+PEN E +G + D+ G EKKWPGWPGE+VFRMLVP KVGSIIGRKGE+IK
Sbjct: 121 VPENYQAQE-KGHDADTVSGGI----EKKWPGWPGESVFRMLVPAQKVGSIIGRKGEFIK 175
Query: 666 KTCEETKARIKILDGPPGTTER 601
K EET+ARIKILDGPPGTTER
Sbjct: 176 KIVEETRARIKILDGPPGTTER 197
>ref|XP_003521747.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 443
Score = 189 bits (481), Expect(2) = 4e-70
Identities = 94/160 (58%), Positives = 111/160 (69%)
Frame = -2
Query: 482 DTDPAHAPPGAGGTVTTRMLVAATQGGSLIGKQGATIKSIQDASNCTIRVLGGENLPFFA 303
++D HAP G G V+T++LV A+Q GSLIGKQG T+KSIQ+ASNC +RVLG E+LP FA
Sbjct: 122 ESDFTHAPSGVAGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPIFA 181
Query: 302 LPDDSVVEVQGEATGVHKAVELIATHLRKFLVDRSVIGIFEMKMQMPNPQMEHMXXXXXX 123
L DD VVEV G+ GVHKA+ELIA+HLRKFLVDR VI IFEM MQ NP
Sbjct: 182 LQDDRVVEVVGDPAGVHKALELIASHLRKFLVDRGVIPIFEMNMQTANPHHAEHMPPHQS 241
Query: 122 XXXPQAFAPNATRGPGYGANPHFMPLPRQLDNYYPQADMP 3
Q PN GPG+G +MP PRQLD+YYP A+MP
Sbjct: 242 WGPSQGLPPNVGGGPGFGPPSQYMPPPRQLDSYYPSAEMP 281
Score = 102 bits (255), Expect(2) = 4e-70
Identities = 45/56 (80%), Positives = 50/56 (89%)
Frame = -1
Query: 768 EKKWPGWPGENVFRMLVPVHKVGSIIGRKGEYIKKTCEETKARIKILDGPPGTTER 601
EKKWPGWPGE+VFRMLVP KVG IIGRKGE+IKK EET+AR+KILDGPPGT +R
Sbjct: 34 EKKWPGWPGESVFRMLVPAQKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTVQR 89
>ref|XP_003554712.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 1-like
[Glycine max]
Length = 446
Score = 185 bits (469), Expect(2) = 4e-69
Identities = 94/160 (58%), Positives = 111/160 (69%)
Frame = -2
Query: 482 DTDPAHAPPGAGGTVTTRMLVAATQGGSLIGKQGATIKSIQDASNCTIRVLGGENLPFFA 303
++D HAP G G V+T++LV A+Q GSLIGKQG T+KSIQ+ASNC +RVLG E+LP FA
Sbjct: 125 ESDFTHAPSGVAGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPIFA 184
Query: 302 LPDDSVVEVQGEATGVHKAVELIATHLRKFLVDRSVIGIFEMKMQMPNPQMEHMXXXXXX 123
L DD VVEV G+ TGVHKA+ELIA+HLRKFLVDR VI IFEM MQ N
Sbjct: 185 LQDDRVVEVVGDPTGVHKALELIASHLRKFLVDRGVIPIFEMNMQTANTHHAEHMPPHQS 244
Query: 122 XXXPQAFAPNATRGPGYGANPHFMPLPRQLDNYYPQADMP 3
PQ PN G G+G +MP PRQLD+YYP A+MP
Sbjct: 245 WGPPQGLPPNVGGGSGFGPPSQYMPPPRQLDSYYPPAEMP 284
Score = 103 bits (258), Expect(2) = 4e-69
Identities = 48/74 (64%), Positives = 56/74 (75%)
Frame = -1
Query: 822 EIQGSENDSKDDGFVNDEEKKWPGWPGENVFRMLVPVHKVGSIIGRKGEYIKKTCEETKA 643
E++ E + V EKKWPGWPGE+VFRMLVP KVG IIGRKGE+IKK EET+A
Sbjct: 19 EVEAEEEMHGGEEAVVVAEKKWPGWPGESVFRMLVPAQKVGGIIGRKGEFIKKIVEETRA 78
Query: 642 RIKILDGPPGTTER 601
R+KILDGPPGT +R
Sbjct: 79 RVKILDGPPGTVQR 92
>ref|XP_003554280.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 528
Score = 171 bits (432), Expect(2) = 2e-68
Identities = 92/165 (55%), Positives = 114/165 (69%), Gaps = 5/165 (3%)
Frame = -2
Query: 482 DTDPAHAPPGAGGTVTTRMLVAATQGGSLIGKQGATIKSIQDASNCTIRVLGGENLPFFA 303
D D A + AG +V TR+LVA TQ GSLIGKQG+TIKSIQD S CTIRVLG ENLP FA
Sbjct: 202 DRDLADSALAAGRSVVTRLLVADTQAGSLIGKQGSTIKSIQDGSGCTIRVLGSENLPIFA 261
Query: 302 LPDDSVVEVQGEATGVHKAVELIATHLRKFLVDRSVIGIFEMKMQMPNPQM-EHMXXXXX 126
L DDS+VE+QGE+ GVHKAVELIA HLRKFLVDRS++G+FE +MQM + ++ +++
Sbjct: 262 LRDDSIVEIQGESAGVHKAVELIAVHLRKFLVDRSIVGVFETQMQMSDVRVNQNLPPHQN 321
Query: 125 XXXXPQAF-AP---NATRGPGYGANPHFMPLPRQLDNYYPQADMP 3
PQ F AP GP + N +MP D+YYP ++P
Sbjct: 322 WGPPPQGFPAPAGGGGGGGPAFAPNHQYMPPSHHYDSYYPPTELP 366
Score = 115 bits (289), Expect(2) = 2e-68
Identities = 59/82 (71%), Positives = 64/82 (78%)
Frame = -1
Query: 846 IPENSHPPEIQGSENDSKDDGFVNDEEKKWPGWPGENVFRMLVPVHKVGSIIGRKGEYIK 667
+PE+ QGSE DSK +E KKWPGWPGENVFRMLVPV KVGSIIGRKGE+IK
Sbjct: 94 VPEDFDSLPKQGSEIDSK-----GNEIKKWPGWPGENVFRMLVPVQKVGSIIGRKGEFIK 148
Query: 666 KTCEETKARIKILDGPPGTTER 601
K EETKARIKILDGPPG +ER
Sbjct: 149 KITEETKARIKILDGPPGISER 170
>ref|XP_002319087.1| predicted protein [Populus trichocarpa] gi|222857463|gb|EEE95010.1|
predicted protein [Populus trichocarpa]
Length = 392
Score = 207 bits (528), Expect(2) = 2e-67
Identities = 105/160 (65%), Positives = 121/160 (75%)
Frame = -2
Query: 482 DTDPAHAPPGAGGTVTTRMLVAATQGGSLIGKQGATIKSIQDASNCTIRVLGGENLPFFA 303
D+D ++ PP +G V+TR+LV A+Q GSLIGKQG T+KSIQ+AS C +RVLG E+LP FA
Sbjct: 75 DSDSSNTPPTSGAKVSTRLLVPASQAGSLIGKQGGTVKSIQEASTCIVRVLGAEDLPVFA 134
Query: 302 LPDDSVVEVQGEATGVHKAVELIATHLRKFLVDRSVIGIFEMKMQMPNPQMEHMXXXXXX 123
L DD VVEV GEA GVHKAVELIA+HLRKFLVDRS+I +FEM+MQM NP ME M
Sbjct: 135 LQDDRVVEVLGEAAGVHKAVELIASHLRKFLVDRSIIPLFEMQMQMSNPSMEQM-PPHQS 193
Query: 122 XXXPQAFAPNATRGPGYGANPHFMPLPRQLDNYYPQADMP 3
PQ PN GPGYG NP +MP PRQLDNYYP ADMP
Sbjct: 194 WGPPQPLPPNHGGGPGYGQNPQYMPPPRQLDNYYPPADMP 233
Score = 75.5 bits (184), Expect(2) = 2e-67
Identities = 36/42 (85%), Positives = 38/42 (90%)
Frame = -1
Query: 726 MLVPVHKVGSIIGRKGEYIKKTCEETKARIKILDGPPGTTER 601
MLVP KVGSIIGRKGE+IKK EET+ARIKILDGPPGTTER
Sbjct: 1 MLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTER 42