BLASTX nr result

ID: Panax21_contig00001516 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00001516
         (508 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277419.1| PREDICTED: DEAD-box ATP-dependent RNA helica...   146   2e-33
emb|CAN74586.1| hypothetical protein VITISV_041989 [Vitis vinifera]   146   2e-33
ref|XP_003521597.1| PREDICTED: DEAD-box ATP-dependent RNA helica...   129   3e-28
ref|XP_003625986.1| DEAD-box ATP-dependent RNA helicase [Medicag...   129   3e-28
ref|XP_003554554.1| PREDICTED: DEAD-box ATP-dependent RNA helica...   126   2e-27

>ref|XP_002277419.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 24 [Vitis vinifera]
            gi|297743992|emb|CBI36962.3| unnamed protein product
            [Vitis vinifera]
          Length = 771

 Score =  146 bits (368), Expect = 2e-33
 Identities = 78/132 (59%), Positives = 96/132 (72%), Gaps = 3/132 (2%)
 Frame = +2

Query: 59   DFGLGIGYNPESKSTPSNAVPSRSAAVNSLKTGMMAQFRSSFVAASTGS-HVGMSNSSGM 235
            DFGLGIGYNPES +  S  VPSR+AAVNSL+TGMMAQF+S+FVAA++GS + G +NS   
Sbjct: 640  DFGLGIGYNPESNNPSSQTVPSRAAAVNSLRTGMMAQFKSNFVAATSGSQNQGSNNSPST 699

Query: 236  YANKKTVLPGFVXXXXXXXXXHTAQTSISVNSTPLYSGTSS--QSRENASQKNSESSKDR 409
            YANK+ VL GFV         + AQT+ S +  P  +G +S   S ENAS +NSE+S+DR
Sbjct: 700  YANKRPVLQGFVSGGSIGGDMNRAQTTSSFSPAPTSAGKTSGQNSGENASHRNSENSRDR 759

Query: 410  GRERRRPSGWDR 445
             RERRRPSGWDR
Sbjct: 760  SRERRRPSGWDR 771


>emb|CAN74586.1| hypothetical protein VITISV_041989 [Vitis vinifera]
          Length = 771

 Score =  146 bits (368), Expect = 2e-33
 Identities = 78/132 (59%), Positives = 96/132 (72%), Gaps = 3/132 (2%)
 Frame = +2

Query: 59   DFGLGIGYNPESKSTPSNAVPSRSAAVNSLKTGMMAQFRSSFVAASTGS-HVGMSNSSGM 235
            DFGLGIGYNPES +  S  VPSR+AAVNSL+TGMMAQF+S+FVAA++GS + G +NS   
Sbjct: 640  DFGLGIGYNPESNNPSSQTVPSRAAAVNSLRTGMMAQFKSNFVAATSGSQNQGSNNSPST 699

Query: 236  YANKKTVLPGFVXXXXXXXXXHTAQTSISVNSTPLYSGTSS--QSRENASQKNSESSKDR 409
            YANK+ VL GFV         + AQT+ S +  P  +G +S   S ENAS +NSE+S+DR
Sbjct: 700  YANKRPVLQGFVSGGSIGGDMNRAQTTSSFSPAPTSAGKTSGQNSGENASHRNSENSRDR 759

Query: 410  GRERRRPSGWDR 445
             RERRRPSGWDR
Sbjct: 760  SRERRRPSGWDR 771


>ref|XP_003521597.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 24-like [Glycine max]
          Length = 782

 Score =  129 bits (323), Expect = 3e-28
 Identities = 72/131 (54%), Positives = 89/131 (67%), Gaps = 2/131 (1%)
 Frame = +2

Query: 59   DFGLGIGYNPESKSTPSNAVPSRSAAVNSLKTGMMAQFRSSFVAASTGS-HVGMSNSSGM 235
            DFGLGIGYNPES + PS   PSRSAAVNSL+TGMM+QF+S+FVAAS+ S + G  N++ M
Sbjct: 654  DFGLGIGYNPESNNAPSTTAPSRSAAVNSLRTGMMSQFKSNFVAASSNSQNQGFGNNTSM 713

Query: 236  YANKKTVLPGFVXXXXXXXXXHTAQTSISVN-STPLYSGTSSQSRENASQKNSESSKDRG 412
             ANK+T LPGFV         +T Q++ S N +T     TS     N  QK++ SSK   
Sbjct: 714  TANKRTALPGFVSGGSIGGDINTYQSTASPNPATSAVISTSQGYGVNPGQKSTNSSKP-- 771

Query: 413  RERRRPSGWDR 445
            +ERRRPSGWDR
Sbjct: 772  KERRRPSGWDR 782


>ref|XP_003625986.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
            gi|355501001|gb|AES82204.1| DEAD-box ATP-dependent RNA
            helicase [Medicago truncatula]
          Length = 775

 Score =  129 bits (323), Expect = 3e-28
 Identities = 73/131 (55%), Positives = 86/131 (65%), Gaps = 2/131 (1%)
 Frame = +2

Query: 59   DFGLGIGYNPESKSTPSNAVPSRSAAVNSLKTGMMAQFRSSFVAA-STGSHVGMSNSSGM 235
            DFGLGIGY+ +S + PSNAVP RSAAVNSL+TGMM+QFRSSFVAA ST  + G SN++ M
Sbjct: 647  DFGLGIGYSTDSNNAPSNAVPGRSAAVNSLRTGMMSQFRSSFVAASSTSQNEGFSNNTSM 706

Query: 236  YANKKTVLPGFVXXXXXXXXXHTAQTSISVNSTP-LYSGTSSQSRENASQKNSESSKDRG 412
              NK+  L GFV         +T Q + S N  P   + TS  S  N  Q N+ SSK   
Sbjct: 707  AVNKRPTLAGFVSGGSIGGDINTHQQTASYNPAPSAVNSTSQSSGVNPGQNNTNSSKP-- 764

Query: 413  RERRRPSGWDR 445
            RERRRPSGWDR
Sbjct: 765  RERRRPSGWDR 775


>ref|XP_003554554.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 24-like [Glycine max]
          Length = 768

 Score =  126 bits (317), Expect = 2e-27
 Identities = 71/131 (54%), Positives = 88/131 (67%), Gaps = 2/131 (1%)
 Frame = +2

Query: 59   DFGLGIGYNPESKSTPSNAVPSRSAAVNSLKTGMMAQFRSSFVAASTGS-HVGMSNSSGM 235
            DFGLGIGYN ES + PS   PSRSAAVNSL+TGMM+QF+S+FVAAS+ S + G  +++ M
Sbjct: 640  DFGLGIGYNSESNNAPSTTAPSRSAAVNSLRTGMMSQFKSNFVAASSNSQNQGFGSNTSM 699

Query: 236  YANKKTVLPGFVXXXXXXXXXHTAQTSISVN-STPLYSGTSSQSRENASQKNSESSKDRG 412
             ANK+  LPGFV         +T Q + S N +T   + TS  S  N  QKN+ SSK   
Sbjct: 700  AANKRPALPGFVSGGSIGGDINTYQNTASPNPATSAVNSTSQVSGVNPGQKNTNSSKP-- 757

Query: 413  RERRRPSGWDR 445
            +ERRRPSGWDR
Sbjct: 758  KERRRPSGWDR 768


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