BLASTX nr result

ID: Panax21_contig00000472 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00000472
         (381 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270570.2| PREDICTED: E3 ubiquitin-protein ligase RHF2A...   118   4e-25
emb|CBI39117.3| unnamed protein product [Vitis vinifera]              118   4e-25
ref|XP_002322768.1| predicted protein [Populus trichocarpa] gi|2...   104   7e-21
ref|XP_004167871.1| PREDICTED: E3 ubiquitin-protein ligase RHF2A...    99   3e-19
ref|XP_004136533.1| PREDICTED: E3 ubiquitin-protein ligase RHF2A...    99   3e-19

>ref|XP_002270570.2| PREDICTED: E3 ubiquitin-protein ligase RHF2A-like [Vitis vinifera]
          Length = 387

 Score =  118 bits (296), Expect = 4e-25
 Identities = 70/131 (53%), Positives = 81/131 (61%), Gaps = 7/131 (5%)
 Frame = -3

Query: 373 SRIFH-------QLQHLPVDASDTGLEDHIIQHLXXXXXXAMGRAQHVARRDGSRIRSST 215
           S IFH       +LQHLPV  +D  LE+ IIQHL       MGRA H+ARR+G R RSS 
Sbjct: 106 SAIFHHPTLGDFELQHLPVGTNDPELEERIIQHLAAAAA--MGRAHHIARREGQRSRSSA 163

Query: 214 HARRQFLVFSTHPNSLXXXXXXXXXXXVQGEPEPASITVASPSVPLTASGGDLPQHNPQF 35
           H R  FLVFSTHPN+            V GE EPA+ITVASPS+PL A G +  Q  PQF
Sbjct: 164 HGRSHFLVFSTHPNATASGPVPASLVQV-GENEPAAITVASPSIPLPAGGDEPSQEIPQF 222

Query: 34  PSVQSGQISAS 2
           PSVQ+  +SAS
Sbjct: 223 PSVQTDHMSAS 233


>emb|CBI39117.3| unnamed protein product [Vitis vinifera]
          Length = 391

 Score =  118 bits (296), Expect = 4e-25
 Identities = 70/131 (53%), Positives = 81/131 (61%), Gaps = 7/131 (5%)
 Frame = -3

Query: 373 SRIFH-------QLQHLPVDASDTGLEDHIIQHLXXXXXXAMGRAQHVARRDGSRIRSST 215
           S IFH       +LQHLPV  +D  LE+ IIQHL       MGRA H+ARR+G R RSS 
Sbjct: 106 SAIFHHPTLGDFELQHLPVGTNDPELEERIIQHLAAAAA--MGRAHHIARREGQRSRSSA 163

Query: 214 HARRQFLVFSTHPNSLXXXXXXXXXXXVQGEPEPASITVASPSVPLTASGGDLPQHNPQF 35
           H R  FLVFSTHPN+            V GE EPA+ITVASPS+PL A G +  Q  PQF
Sbjct: 164 HGRSHFLVFSTHPNATASGPVPASLVQV-GENEPAAITVASPSIPLPAGGDEPSQEIPQF 222

Query: 34  PSVQSGQISAS 2
           PSVQ+  +SAS
Sbjct: 223 PSVQTDHMSAS 233


>ref|XP_002322768.1| predicted protein [Populus trichocarpa] gi|222867398|gb|EEF04529.1|
           predicted protein [Populus trichocarpa]
          Length = 387

 Score =  104 bits (260), Expect = 7e-21
 Identities = 61/133 (45%), Positives = 78/133 (58%), Gaps = 7/133 (5%)
 Frame = -3

Query: 379 RNSRIFH-------QLQHLPVDASDTGLEDHIIQHLXXXXXXAMGRAQHVARRDGSRIRS 221
           RN+ IFH       +LQHLPV  SD+ LE+ IIQHL       MGR +H  RR+G R R+
Sbjct: 100 RNATIFHHPTLGDFELQHLPVGVSDSELEERIIQHLAAAAA--MGRTRHFGRREGQRNRT 157

Query: 220 STHARRQFLVFSTHPNSLXXXXXXXXXXXVQGEPEPASITVASPSVPLTASGGDLPQHNP 41
           S+H R  FLVFSTHP +            + GE EPA ++VASPS  LT+ G + PQ   
Sbjct: 158 SSHGRPHFLVFSTHPGAQPSGHVSSSLTQLGGENEPAPVSVASPSTQLTSVGDEPPQQAL 217

Query: 40  QFPSVQSGQISAS 2
           Q PSV + Q S++
Sbjct: 218 QSPSVLTDQSSSA 230


>ref|XP_004167871.1| PREDICTED: E3 ubiquitin-protein ligase RHF2A-like [Cucumis sativus]
          Length = 371

 Score = 99.4 bits (246), Expect = 3e-19
 Identities = 60/133 (45%), Positives = 74/133 (55%), Gaps = 7/133 (5%)
 Frame = -3

Query: 379 RNSRIFH-------QLQHLPVDASDTGLEDHIIQHLXXXXXXAMGRAQHVARRDGSRIRS 221
           RN+ +FH       +LQHLP+  ++  LE+ IIQHL       MGR  H+ RR+G R RS
Sbjct: 100 RNTAVFHHPALGNFELQHLPLGVNNAELEERIIQHLAAAAA--MGRTHHIGRREG-RSRS 156

Query: 220 STHARRQFLVFSTHPNSLXXXXXXXXXXXVQGEPEPASITVASPSVPLTASGGDLPQHNP 41
           S+H R  FLVFSTHP                   EPA ITVASPS PLT  G +  QH  
Sbjct: 157 SSHGRPHFLVFSTHPGGPPEHVSASGV-----HTEPAGITVASPSSPLTPRGDEPSQHIA 211

Query: 40  QFPSVQSGQISAS 2
           QFPS+Q+  +S S
Sbjct: 212 QFPSIQTDHVSRS 224


>ref|XP_004136533.1| PREDICTED: E3 ubiquitin-protein ligase RHF2A-like [Cucumis sativus]
          Length = 371

 Score = 99.4 bits (246), Expect = 3e-19
 Identities = 60/133 (45%), Positives = 74/133 (55%), Gaps = 7/133 (5%)
 Frame = -3

Query: 379 RNSRIFH-------QLQHLPVDASDTGLEDHIIQHLXXXXXXAMGRAQHVARRDGSRIRS 221
           RN+ +FH       +LQHLP+  ++  LE+ IIQHL       MGR  H+ RR+G R RS
Sbjct: 100 RNTAVFHHPALGNFELQHLPLGVNNAELEERIIQHLAAAAA--MGRTHHIGRREG-RSRS 156

Query: 220 STHARRQFLVFSTHPNSLXXXXXXXXXXXVQGEPEPASITVASPSVPLTASGGDLPQHNP 41
           S+H R  FLVFSTHP                   EPA ITVASPS PLT  G +  QH  
Sbjct: 157 SSHGRPHFLVFSTHPGGPPEHVSASGV-----HTEPAGITVASPSSPLTPRGDEPSQHIA 211

Query: 40  QFPSVQSGQISAS 2
           QFPS+Q+  +S S
Sbjct: 212 QFPSIQTDHVSRS 224


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