BLASTX nr result

ID: Panax21_contig00000464 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00000464
         (797 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN68722.1| hypothetical protein VITISV_033681 [Vitis vinifera]   310   2e-82
ref|XP_002268489.1| PREDICTED: probable ribosome biogenesis prot...   309   4e-82
ref|XP_002283418.1| PREDICTED: probable ribosome biogenesis prot...   305   6e-81
ref|XP_002312895.1| predicted protein [Populus trichocarpa] gi|1...   286   3e-75
ref|XP_003551069.1| PREDICTED: probable ribosome biogenesis prot...   285   8e-75

>emb|CAN68722.1| hypothetical protein VITISV_033681 [Vitis vinifera]
          Length = 1073

 Score =  310 bits (795), Expect = 2e-82
 Identities = 154/180 (85%), Positives = 166/180 (92%), Gaps = 2/180 (1%)
 Frame = -3

Query: 708 IKKKSDRMRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTK 529
           I++    MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTK
Sbjct: 50  IEEARSIMRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTK 109

Query: 528 AYRRLHGKDMTQDSTFEFERKRNRPERYDRNLAENTLKAIKKIEKVRVDREARHHKMRMK 349
           AYRRLHGKDMTQDSTFEFERKRNRPERYDRN+AENTLKAIKKI+KVRVDREARHH +RMK
Sbjct: 110 AYRRLHGKDMTQDSTFEFERKRNRPERYDRNVAENTLKAIKKIDKVRVDREARHHALRMK 169

Query: 348 GKKSIERREAARELEQSIHMVKAPAALREESSLTLPKMKVKVS-QQSEENR-MEE*LAYY 175
           GKK+ E+REAA+ELEQSIHMVKAPA L++E SLTLPK+KVKVS QQSEEN  MEE  + Y
Sbjct: 170 GKKAKEQREAAKELEQSIHMVKAPAVLQQEPSLTLPKIKVKVSQQQSEENHAMEECFSTY 229


>ref|XP_002268489.1| PREDICTED: probable ribosome biogenesis protein RLP24 [Vitis
           vinifera] gi|297734845|emb|CBI17079.3| unnamed protein
           product [Vitis vinifera]
          Length = 168

 Score =  309 bits (792), Expect = 4e-82
 Identities = 152/168 (90%), Positives = 161/168 (95%), Gaps = 2/168 (1%)
 Frame = -3

Query: 687 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 508
           MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 507 KDMTQDSTFEFERKRNRPERYDRNLAENTLKAIKKIEKVRVDREARHHKMRMKGKKSIER 328
           KDMTQDSTFEFERKRNRPERYDRN+AENTLKAIKKI+KVRVDREARHH +RMKGKK+ E+
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNVAENTLKAIKKIDKVRVDREARHHALRMKGKKAKEQ 120

Query: 327 REAARELEQSIHMVKAPAALREESSLTLPKMKVKVS-QQSEENR-MEE 190
           REAA+ELEQSIHMVKAPA L++E SLTLPK+KVKVS QQSEEN  MEE
Sbjct: 121 REAAKELEQSIHMVKAPAVLQQEPSLTLPKIKVKVSQQQSEENHAMEE 168


>ref|XP_002283418.1| PREDICTED: probable ribosome biogenesis protein RLP24 [Vitis
           vinifera] gi|297740070|emb|CBI30252.3| unnamed protein
           product [Vitis vinifera]
          Length = 168

 Score =  305 bits (782), Expect = 6e-81
 Identities = 150/168 (89%), Positives = 159/168 (94%), Gaps = 2/168 (1%)
 Frame = -3

Query: 687 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 508
           MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 507 KDMTQDSTFEFERKRNRPERYDRNLAENTLKAIKKIEKVRVDREARHHKMRMKGKKSIER 328
           KDMTQDSTFEFERKRNRPERYDRNLAENTLKAIKKI+KVRVDREARHH +RMKGKK+ E+
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLAENTLKAIKKIDKVRVDREARHHALRMKGKKAKEQ 120

Query: 327 REAARELEQSIHMVKAPAALREESSLTLPKMKVKVSQ-QSEENR-MEE 190
           REAA+ELEQ IHMVKAPA L +E SLTLPK+KVKVS+ Q+EEN  MEE
Sbjct: 121 REAAKELEQGIHMVKAPAVLEKEPSLTLPKIKVKVSRPQAEENHPMEE 168


>ref|XP_002312895.1| predicted protein [Populus trichocarpa] gi|118482826|gb|ABK93329.1|
           unknown [Populus trichocarpa]
           gi|222849303|gb|EEE86850.1| predicted protein [Populus
           trichocarpa]
          Length = 168

 Score =  286 bits (733), Expect = 3e-75
 Identities = 141/168 (83%), Positives = 154/168 (91%), Gaps = 2/168 (1%)
 Frame = -3

Query: 687 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 508
           MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 507 KDMTQDSTFEFERKRNRPERYDRNLAENTLKAIKKIEKVRVDREARHHKMRMKGKKSIER 328
           KDMTQDSTFEFERKRNRPERYDRNLAENTLKAIKKI+KVR DR A H + R+K +K  ER
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLAENTLKAIKKIDKVRSDRAANHIEKRLKVRKGKER 120

Query: 327 REAARELEQSIHMVKAPAALREESSLTLPKMKVKVSQ-QSEENR-MEE 190
           REA +ELEQSIH+VKAP  LR++ SLTLPK+KV+VSQ +SE+N+ MEE
Sbjct: 121 REAQKELEQSIHLVKAPQVLRQDQSLTLPKIKVQVSQPKSEQNQAMEE 168


>ref|XP_003551069.1| PREDICTED: probable ribosome biogenesis protein RLP24-like [Glycine
           max]
          Length = 168

 Score =  285 bits (729), Expect = 8e-75
 Identities = 140/168 (83%), Positives = 151/168 (89%), Gaps = 2/168 (1%)
 Frame = -3

Query: 687 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 508
           MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRR+HG
Sbjct: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHG 60

Query: 507 KDMTQDSTFEFERKRNRPERYDRNLAENTLKAIKKIEKVRVDREARHHKMRMKGKKSIER 328
           KDMTQDSTFEFERKRNRPERYDRNLAEN LKAI KI+K+RV RE RHHK RMKGKK    
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLAENVLKAIPKIDKIRVTREERHHKNRMKGKKEKLL 120

Query: 327 REAARELEQSIHMVKAPAALREESSLTLPKMKVKVS-QQSEENR-MEE 190
           +EA +ELEQ I +VKAP+ L+++ SLTLPK+KVKVS QQSEEN  MEE
Sbjct: 121 KEAVKELEQGISLVKAPSVLQQDPSLTLPKIKVKVSQQQSEENHAMEE 168


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