BLASTX nr result

ID: Panax21_contig00000436 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00000436
         (1397 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283798.1| PREDICTED: nuclear pore complex protein Nup8...   616   e-174
ref|XP_002324219.1| predicted protein [Populus trichocarpa] gi|2...   578   e-162
ref|XP_002516506.1| conserved hypothetical protein [Ricinus comm...   566   e-159
dbj|BAF45348.1| nucleoporin [Lotus japonicus]                         563   e-158
ref|XP_003550123.1| PREDICTED: nuclear pore complex protein Nup8...   554   e-155

>ref|XP_002283798.1| PREDICTED: nuclear pore complex protein Nup85 [Vitis vinifera]
            gi|296081842|emb|CBI20847.3| unnamed protein product
            [Vitis vinifera]
          Length = 715

 Score =  616 bits (1588), Expect = e-174
 Identities = 289/435 (66%), Positives = 364/435 (83%), Gaps = 1/435 (0%)
 Frame = +2

Query: 95   MPGLASNSSDSSLVPYSPEVRNPAVFPIHHGLKPPISRLSISWSRGNSLRVSIFRQPQSD 274
            MPGL ++S ++ LVP SPE     V+P+HHGLKPPISRLSISWSRGN+LRVS+FR+  ++
Sbjct: 1    MPGLTADSGNA-LVPLSPEAHVSVVYPLHHGLKPPISRLSISWSRGNALRVSVFRELPAE 59

Query: 275  ANESDXXXXXXXXXXXXXXXXSEFDDAQWRRIAYWSVTPFAVLQGRKNSMSAMSKMS-GS 451
            +++SD                 E DDAQWRRIAY SV+PFA+LQ R+NS+ A+SKMS  S
Sbjct: 60   SSDSDGEAGGKVVQVKLGVADGEVDDAQWRRIAYGSVSPFALLQSRRNSVLALSKMSMSS 119

Query: 452  NPYNAYWWDYIIEYSKEIKSLLGDQKLPPNSAIEDPRTILQKVEEPTFLKAAWELMEIFY 631
            +PY+  WW+Y++EYSK+I SLL + K  PNS I+DP+T+L+KVEEPT LKAAW L+EIFY
Sbjct: 120  SPYHPDWWEYVMEYSKDISSLLDNAKSLPNSMIDDPKTVLKKVEEPTCLKAAWGLLEIFY 179

Query: 632  ADQQSQSWIPEQLVDWLAVFDSLFTGAQPTVHSKLVDFQIELVTLQAVEDDPKYWEVVSS 811
            AD++SQ+W+PE++VDWLA +D LF+G Q TVHSKLV+FQ E+V LQ +EDDP+YWEV++S
Sbjct: 180  ADKESQAWLPERIVDWLADYDVLFSGTQATVHSKLVEFQKEIVRLQVIEDDPRYWEVITS 239

Query: 812  ALAIGWLDIVVKLLRLHGSYQQNQIGSRETENGLVEAVAVLISKMPRMRPDLAAGKLGES 991
            ALA+GWL+IVVKLLRLHGSYQ +Q+ +RETENGLVEAVA+LISKMPRMRP+L AG+LGE 
Sbjct: 240  ALAVGWLEIVVKLLRLHGSYQLDQLSNRETENGLVEAVAILISKMPRMRPELEAGRLGEC 299

Query: 992  YESKPDFVKAWEKWRGQIIKLDCSAFWLQCGHQKTREGLKNLLQIMLGNASILSIATFHW 1171
            +++KPDF+KAWEKWR QI KLDCS+FW+QC H++TREGL+N+LQ+MLGN + L  +T HW
Sbjct: 300  FKTKPDFIKAWEKWRAQITKLDCSSFWVQCDHRQTREGLRNMLQLMLGNTNNLCTSTCHW 359

Query: 1172 IELYVAHFLYIRPFTAGLESMYNLAQKCMQSKPASSPHKLMELLTGILGENTEVVLAACS 1351
            IELY++HFLY+RPFT GLESM+ LAQKC+Q KP SS H+LM L+ GILGENTEVVLA CS
Sbjct: 360  IELYISHFLYVRPFTVGLESMHALAQKCIQLKPISSSHRLMGLIVGILGENTEVVLAECS 419

Query: 1352 RSFGPWMVAHAVELL 1396
            R+FGPWMVAHA+ELL
Sbjct: 420  RAFGPWMVAHAIELL 434


>ref|XP_002324219.1| predicted protein [Populus trichocarpa] gi|222865653|gb|EEF02784.1|
            predicted protein [Populus trichocarpa]
          Length = 720

 Score =  578 bits (1489), Expect = e-162
 Identities = 282/438 (64%), Positives = 339/438 (77%), Gaps = 4/438 (0%)
 Frame = +2

Query: 95   MPGLASNSSDSS----LVPYSPEVRNPAVFPIHHGLKPPISRLSISWSRGNSLRVSIFRQ 262
            MP +A++S+ S+    LVP+ P+     V+P+HHGLKPPISR+SISW+RGN+LRVS+ R 
Sbjct: 1    MPDVAADSAASASAGELVPFVPDTEIAVVYPLHHGLKPPISRVSISWARGNNLRVSLLRN 60

Query: 263  PQSDANESDXXXXXXXXXXXXXXXXSEFDDAQWRRIAYWSVTPFAVLQGRKNSMSAMSKM 442
            P S+++                      + AQWRRIAY SVTPFA+LQ RKNS S +SK+
Sbjct: 61   PPSNSDSDGEIGGKVVEVNLDSGAADVREPAQWRRIAYGSVTPFALLQSRKNSASILSKL 120

Query: 443  SGSNPYNAYWWDYIIEYSKEIKSLLGDQKLPPNSAIEDPRTILQKVEEPTFLKAAWELME 622
              S       W Y++EYSK+IK LLG+ K   N  IEDP+ +L+K EEPT LKAAWELME
Sbjct: 121  QSSPSPFHLDWQYVMEYSKDIKELLGNPKSNYNPLIEDPKEVLKKGEEPTSLKAAWELME 180

Query: 623  IFYADQQSQSWIPEQLVDWLAVFDSLFTGAQPTVHSKLVDFQIELVTLQAVEDDPKYWEV 802
            +FYAD+  QSW+PE+LVDWLA +D L +G QP VHSKLV+FQ  LVTLQ +EDDPKYWEV
Sbjct: 181  MFYADKLCQSWLPERLVDWLADYDCLLSGDQPAVHSKLVEFQGTLVTLQVIEDDPKYWEV 240

Query: 803  VSSALAIGWLDIVVKLLRLHGSYQQNQIGSRETENGLVEAVAVLISKMPRMRPDLAAGKL 982
            +SSALA+GWL+IVVKLLRLHGSYQ +QI  RETENGLVE VAVLIS MPRMRP+L  GKL
Sbjct: 241  ISSALAVGWLEIVVKLLRLHGSYQLDQISRRETENGLVETVAVLISMMPRMRPELKNGKL 300

Query: 983  GESYESKPDFVKAWEKWRGQIIKLDCSAFWLQCGHQKTREGLKNLLQIMLGNASILSIAT 1162
            GE +++KPDF+KAWEKWR QI KLD SAFW+ C H++TREGLKNL+QIMLGN  IL  AT
Sbjct: 301  GECFKAKPDFMKAWEKWREQITKLDSSAFWVLCDHRQTREGLKNLIQIMLGNTEILCTAT 360

Query: 1163 FHWIELYVAHFLYIRPFTAGLESMYNLAQKCMQSKPASSPHKLMELLTGILGENTEVVLA 1342
             HWIELY++HFL+IRPFT G ESMYNLAQKC++ KP SSPHKL+ L+ GI+GENTEVVLA
Sbjct: 361  SHWIELYISHFLFIRPFTVGFESMYNLAQKCVKMKPMSSPHKLLRLIIGIIGENTEVVLA 420

Query: 1343 ACSRSFGPWMVAHAVELL 1396
             CSR FGPWMV HA+ELL
Sbjct: 421  ECSRGFGPWMVTHAIELL 438


>ref|XP_002516506.1| conserved hypothetical protein [Ricinus communis]
            gi|223544326|gb|EEF45847.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 725

 Score =  566 bits (1459), Expect = e-159
 Identities = 272/443 (61%), Positives = 346/443 (78%), Gaps = 9/443 (2%)
 Frame = +2

Query: 95   MPGLASNSSDSS-------LVPYSPEVRNPAVFPIHHGLKPPISRLSISWSRGNSLRVSI 253
            MPG+ S S  +S       LVPY PE +   V+P+ HGLKPPISR+SIS++RGNSLR+S+
Sbjct: 1    MPGVPSASGGASDSISSNVLVPYLPESQVSVVYPLRHGLKPPISRVSISFARGNSLRISV 60

Query: 254  FRQPQSDANESDXXXXXXXXXXXXXXXXSEFDDAQWRRIAYWSVTPFAVLQGRKNSMSAM 433
            FRQP SD++                    E +DA WRRIAY SV+P+A+L+ R+N  S +
Sbjct: 61   FRQPFSDSDTDSEIGGKVLEVKLGGNGDGELNDAYWRRIAYASVSPYALLKSRRNCASNL 120

Query: 434  SKMSGS-NPYNAYWWDYIIEYSKEIKSLLGDQKLPP-NSAIEDPRTILQKVEEPTFLKAA 607
            SK+  S +PY+  WW+Y++EYSK+I S L + K       IEDP+  L+K E PT L+AA
Sbjct: 121  SKLQLSPSPYHLEWWEYVMEYSKDISSFLVNPKSSTAGPVIEDPKEFLEKRERPTCLRAA 180

Query: 608  WELMEIFYADQQSQSWIPEQLVDWLAVFDSLFTGAQPTVHSKLVDFQIELVTLQAVEDDP 787
            W+LMEIFYAD+ +QSWIPE++VDWL+ +D L +  Q TV+ KLV+FQ ELVTLQ +ED+P
Sbjct: 181  WDLMEIFYADKLAQSWIPERMVDWLSDYDILLSSTQETVYMKLVEFQEELVTLQVIEDNP 240

Query: 788  KYWEVVSSALAIGWLDIVVKLLRLHGSYQQNQIGSRETENGLVEAVAVLISKMPRMRPDL 967
            K+WEV+SSALA+GWL+I VK+LRLHGSYQ +Q+GSRETENGLVEAVAVL+SKMPR+RP L
Sbjct: 241  KFWEVISSALAVGWLEIAVKVLRLHGSYQLDQLGSRETENGLVEAVAVLVSKMPRIRPGL 300

Query: 968  AAGKLGESYESKPDFVKAWEKWRGQIIKLDCSAFWLQCGHQKTREGLKNLLQIMLGNASI 1147
             AGKLGE +++KPDF+KAWE+WR Q+ KL+ SAFW+QC H++TREGLKN+LQIMLGN +I
Sbjct: 301  TAGKLGECFKAKPDFMKAWERWRAQVTKLESSAFWVQCDHRRTREGLKNMLQIMLGNTNI 360

Query: 1148 LSIATFHWIELYVAHFLYIRPFTAGLESMYNLAQKCMQSKPASSPHKLMELLTGILGENT 1327
            LS  T +W+E+Y++H LYIRPFT GLESMY+LAQKC+Q KP SSPHKLM+L+ GILGENT
Sbjct: 361  LSTMTCNWVEMYISHILYIRPFTVGLESMYSLAQKCIQLKPTSSPHKLMQLILGILGENT 420

Query: 1328 EVVLAACSRSFGPWMVAHAVELL 1396
            EV+LA CSR FGPWMV HA+ELL
Sbjct: 421  EVILAECSRGFGPWMVTHAIELL 443


>dbj|BAF45348.1| nucleoporin [Lotus japonicus]
          Length = 711

 Score =  563 bits (1450), Expect = e-158
 Identities = 274/423 (64%), Positives = 331/423 (78%), Gaps = 1/423 (0%)
 Frame = +2

Query: 131  LVPYSPEVRNP-AVFPIHHGLKPPISRLSISWSRGNSLRVSIFRQPQSDANESDXXXXXX 307
            LVP+S E  +  AV+P++HGL  PISR++ISWSRGNSLRVS+F +P + + +S       
Sbjct: 11   LVPFSGEGSDSVAVYPLNHGLSLPISRVAISWSRGNSLRVSLFAEPSATSPDSQASGAKV 70

Query: 308  XXXXXXXXXXSEFDDAQWRRIAYWSVTPFAVLQGRKNSMSAMSKMSGSNPYNAYWWDYII 487
                       E  D+ WRRIAY SVTPFA+LQ R++S++A+SK    +PY+  WW++++
Sbjct: 71   VEVKLSGEDP-EISDSNWRRIAYGSVTPFALLQSRRSSLAALSK--SPSPYHVDWWEHVL 127

Query: 488  EYSKEIKSLLGDQKLPPNSAIEDPRTILQKVEEPTFLKAAWELMEIFYADQQSQSWIPEQ 667
            EYSK+I SLLG  KL P   IEDP  I  K EEPT LKAAWEL+E+FY D++SQ+W+PE+
Sbjct: 128  EYSKDIASLLGGPKLSPGPIIEDPNAIATKCEEPTCLKAAWELLEMFYVDKRSQAWLPER 187

Query: 668  LVDWLAVFDSLFTGAQPTVHSKLVDFQIELVTLQAVEDDPKYWEVVSSALAIGWLDIVVK 847
            LVDWLA FDSLFT    T+H KLV+FQ ELV +Q +EDDP+YWEV+SSAL++GWLDIVVK
Sbjct: 188  LVDWLADFDSLFTSTHETIHGKLVNFQKELVNIQVIEDDPRYWEVMSSALSVGWLDIVVK 247

Query: 848  LLRLHGSYQQNQIGSRETENGLVEAVAVLISKMPRMRPDLAAGKLGESYESKPDFVKAWE 1027
            +LRLHGSYQ +Q+ SRE ENGLVE VAVLISKMPR+RP+ A   LGE ++SKPDF+KAWE
Sbjct: 248  MLRLHGSYQLDQLSSRERENGLVEVVAVLISKMPRLRPESAVENLGECFKSKPDFIKAWE 307

Query: 1028 KWRGQIIKLDCSAFWLQCGHQKTREGLKNLLQIMLGNASILSIATFHWIELYVAHFLYIR 1207
            KWR QI KLDCS FW+QC +Q+T +GL+NLLQIMLGN   L  AT HWIELYV+HFLYIR
Sbjct: 308  KWRSQITKLDCSPFWIQCDNQQTCDGLRNLLQIMLGNTESLCTATCHWIELYVSHFLYIR 367

Query: 1208 PFTAGLESMYNLAQKCMQSKPASSPHKLMELLTGILGENTEVVLAACSRSFGPWMVAHAV 1387
            PFT G+ESMYNLAQKCMQ KP SS HKL  L+ GILGENTEVVLA CSR FGPWMVAHAV
Sbjct: 368  PFTTGIESMYNLAQKCMQLKPPSSIHKLTGLMIGILGENTEVVLAECSREFGPWMVAHAV 427

Query: 1388 ELL 1396
            ELL
Sbjct: 428  ELL 430


>ref|XP_003550123.1| PREDICTED: nuclear pore complex protein Nup85-like [Glycine max]
          Length = 698

 Score =  554 bits (1427), Expect = e-155
 Identities = 269/423 (63%), Positives = 333/423 (78%)
 Frame = +2

Query: 128  SLVPYSPEVRNPAVFPIHHGLKPPISRLSISWSRGNSLRVSIFRQPQSDANESDXXXXXX 307
            +LVP++ +   PAV+P+HHGL PPISRLSISW+RG+SLR+S+F    +   E        
Sbjct: 10   ALVPFTGD-SPPAVYPLHHGLAPPISRLSISWARGSSLRLSLFAGAAAKVVE-------- 60

Query: 308  XXXXXXXXXXSEFDDAQWRRIAYWSVTPFAVLQGRKNSMSAMSKMSGSNPYNAYWWDYII 487
                      SE  DA WRRIAY SV PFA+LQ R++S+SA+ K    +PY + WW++++
Sbjct: 61   ---VKLAGEDSEIPDAHWRRIAYGSVAPFALLQSRRSSLSALLKTP--SPYRSDWWEHVL 115

Query: 488  EYSKEIKSLLGDQKLPPNSAIEDPRTILQKVEEPTFLKAAWELMEIFYADQQSQSWIPEQ 667
            +YSKEI SLLG  KLP +  IEDP  I ++ EEPT LKAAWEL+EIFY D+QSQ+W+PE+
Sbjct: 116  QYSKEIGSLLGGPKLPASPIIEDPNVIAKRGEEPTSLKAAWELIEIFYVDKQSQAWLPER 175

Query: 668  LVDWLAVFDSLFTGAQPTVHSKLVDFQIELVTLQAVEDDPKYWEVVSSALAIGWLDIVVK 847
            LVDWLA + SLFT    T+H KLVDFQ ELV +Q +E+DP+YW+++SSAL++GWLDIVVK
Sbjct: 176  LVDWLADYASLFTSTHETIHGKLVDFQKELVNIQVIEEDPRYWDLLSSALSVGWLDIVVK 235

Query: 848  LLRLHGSYQQNQIGSRETENGLVEAVAVLISKMPRMRPDLAAGKLGESYESKPDFVKAWE 1027
            +LRLHGSYQ +Q+ +RE ENGLVEAVAVLISKMPRMRP+ + GKLGE Y+SKPDF+KAWE
Sbjct: 236  MLRLHGSYQLDQLSNRELENGLVEAVAVLISKMPRMRPE-SVGKLGECYKSKPDFIKAWE 294

Query: 1028 KWRGQIIKLDCSAFWLQCGHQKTREGLKNLLQIMLGNASILSIATFHWIELYVAHFLYIR 1207
            KWR QI KLDCS FW+QC +Q+TREGL+NLLQIMLGN   L +AT +WIELY++HFLYIR
Sbjct: 295  KWRSQITKLDCSRFWIQCDNQQTREGLRNLLQIMLGNTESLCMATCYWIELYISHFLYIR 354

Query: 1208 PFTAGLESMYNLAQKCMQSKPASSPHKLMELLTGILGENTEVVLAACSRSFGPWMVAHAV 1387
            PFT G+ESMYNLAQKC+Q KP SS H+L  L+ GIL ENTEVVLA CSR FGPW+VAHA+
Sbjct: 355  PFTMGIESMYNLAQKCIQLKPRSSTHRLSVLMIGILEENTEVVLAECSREFGPWLVAHAI 414

Query: 1388 ELL 1396
            ELL
Sbjct: 415  ELL 417


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