BLASTX nr result

ID: Panax21_contig00000338 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00000338
         (1400 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI30950.3| unnamed protein product [Vitis vinifera]              243   9e-62
ref|XP_002279808.1| PREDICTED: auxin response factor 6-like [Vit...   243   9e-62
gb|ADL36576.1| ARF domain class transcription factor [Malus x do...   229   2e-57
ref|XP_004164684.1| PREDICTED: LOW QUALITY PROTEIN: auxin respon...   227   6e-57
ref|XP_004150775.1| PREDICTED: auxin response factor 6-like [Cuc...   227   6e-57

>emb|CBI30950.3| unnamed protein product [Vitis vinifera]
          Length = 531

 Score =  243 bits (620), Expect = 9e-62
 Identities = 121/180 (67%), Positives = 135/180 (75%), Gaps = 2/180 (1%)
 Frame = -3

Query: 1398 PNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFNGM 1219
            PNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPS +G+
Sbjct: 328  PNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSLHGI 387

Query: 1218 KDGDLGMNYPLTWLQGDSGDRGIQSLNFQGI--TPWMQPRINASMLGMQTXXXXXXXXXX 1045
            KD DLGMN PL WL+GD+ DRGIQSLNFQGI   PWMQPR++ASMLG+QT          
Sbjct: 388  KDDDLGMNSPLMWLRGDNVDRGIQSLNFQGIGVNPWMQPRLDASMLGLQT-DMYQAMAAA 446

Query: 1044 XXXXXXXXXASKQASPSLVHFQQTQAVPGRSDGLLHPQMLQQSQSQASFLHSVGENQSLA 865
                      SKQA   L+H+QQ Q V  RS  ++ PQMLQQSQ Q +FL  + EN + A
Sbjct: 447  ALQEMRAVDPSKQAPAPLLHYQQPQNVASRSSCIMQPQMLQQSQPQQAFLQGIHENTNQA 506


>ref|XP_002279808.1| PREDICTED: auxin response factor 6-like [Vitis vinifera]
          Length = 908

 Score =  243 bits (620), Expect = 9e-62
 Identities = 121/180 (67%), Positives = 135/180 (75%), Gaps = 2/180 (1%)
 Frame = -3

Query: 1398 PNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFNGM 1219
            PNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPS +G+
Sbjct: 328  PNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSLHGI 387

Query: 1218 KDGDLGMNYPLTWLQGDSGDRGIQSLNFQGI--TPWMQPRINASMLGMQTXXXXXXXXXX 1045
            KD DLGMN PL WL+GD+ DRGIQSLNFQGI   PWMQPR++ASMLG+QT          
Sbjct: 388  KDDDLGMNSPLMWLRGDNVDRGIQSLNFQGIGVNPWMQPRLDASMLGLQT-DMYQAMAAA 446

Query: 1044 XXXXXXXXXASKQASPSLVHFQQTQAVPGRSDGLLHPQMLQQSQSQASFLHSVGENQSLA 865
                      SKQA   L+H+QQ Q V  RS  ++ PQMLQQSQ Q +FL  + EN + A
Sbjct: 447  ALQEMRAVDPSKQAPAPLLHYQQPQNVASRSSCIMQPQMLQQSQPQQAFLQGIHENTNQA 506



 Score =  145 bits (366), Expect(2) = 4e-59
 Identities = 76/134 (56%), Positives = 95/134 (70%), Gaps = 4/134 (2%)
 Frame = -3

Query: 687 VSGVVPLLSQFASQAXXXXXXXXXXXXXXXXXXSN---GNPVTSPVVSPLHSLLGSFPQD 517
           +  VV  +SQFAS +                   +   GNP TSP++SPL SLLGSFPQD
Sbjct: 555 IPSVVSAISQFASASQSQSPSLQTISSLCQQQSFSDSTGNPGTSPIISPLQSLLGSFPQD 614

Query: 516 ETSHLLNFSRSSALLTSAGWPPKRIAVDPLL-SGASQSVMPQVEQLGPLHTNITQNAVSL 340
           E+S+LLN  RS++L+ SA W PKR+AV+PLL SGASQ ++PQVEQLG   TNI+QN++SL
Sbjct: 615 ESSNLLNMPRSTSLMPSAAWLPKRVAVEPLLPSGASQCILPQVEQLGQPQTNISQNSISL 674

Query: 339 PPFPGRECSIDQDG 298
           PPFPGRECSIDQ+G
Sbjct: 675 PPFPGRECSIDQEG 688



 Score =  110 bits (276), Expect(2) = 4e-59
 Identities = 51/65 (78%), Positives = 57/65 (87%)
 Frame = -2

Query: 196 LMQNGMSSLRGVGSDGDSTNLPFASSNFMSTAGADFSLNPSMTPSSCIDESSYLQSPENA 17
           LMQNGMS LRGVGS+ DST +PF+SSNFMS+ G DFSLNP+MTPSSCIDES +LQSPEN 
Sbjct: 708 LMQNGMSGLRGVGSESDSTAIPFSSSNFMSSTGTDFSLNPAMTPSSCIDESGFLQSPENV 767

Query: 16  GQANP 2
           GQ NP
Sbjct: 768 GQVNP 772


>gb|ADL36576.1| ARF domain class transcription factor [Malus x domestica]
          Length = 895

 Score =  229 bits (583), Expect = 2e-57
 Identities = 113/178 (63%), Positives = 132/178 (74%), Gaps = 4/178 (2%)
 Frame = -3

Query: 1398 PNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFNGM 1219
            PNSHWRSVKVGWDESTAGERQPRVSLWE+EPLTTFPMYPSPF LRLKRPW PGLPSFNGM
Sbjct: 328  PNSHWRSVKVGWDESTAGERQPRVSLWEVEPLTTFPMYPSPFQLRLKRPWTPGLPSFNGM 387

Query: 1218 KDGDLGMNYPLTWLQGDSGDRGIQSLNF--QGITPWMQPRINASMLGMQTXXXXXXXXXX 1045
            +D DLGMN  L WLQG++GDRG+QSLNF   G+TPWMQPR++ASM+G+Q+          
Sbjct: 388  RDDDLGMNSQLVWLQGNNGDRGMQSLNFPGMGVTPWMQPRLDASMIGLQS-DMYQAMAAA 446

Query: 1044 XXXXXXXXXASKQASPSLVHFQQTQAVP--GRSDGLLHPQMLQQSQSQASFLHSVGEN 877
                      S+    SL+ FQQ Q++P   RS  L+ PQM+Q+S SQ +FL  V EN
Sbjct: 447  ALQEMRAVDPSRPLPTSLLQFQQPQSLPNSNRSAALMQPQMVQESHSQQAFLQGVQEN 504



 Score =  146 bits (369), Expect(2) = 5e-52
 Identities = 66/97 (68%), Positives = 83/97 (85%), Gaps = 1/97 (1%)
 Frame = -3

Query: 585 NGNPVTSPVVSPLHSLLGSFPQDETSHLLNFSRSSALLTSAGWPPKRIAVDPLL-SGASQ 409
           NGNP TS V+SPLH+L+GSFPQDE+SHLLN  R++ L++S GWP KR A+DPLL SG SQ
Sbjct: 580 NGNPATSTVISPLHNLMGSFPQDESSHLLNLPRTNQLISSDGWPSKRAAIDPLLSSGVSQ 639

Query: 408 SVMPQVEQLGPLHTNITQNAVSLPPFPGRECSIDQDG 298
            V+P+VEQ GP HT ++QN++SLPPFPGRECS+DQ+G
Sbjct: 640 CVLPRVEQFGPPHTTMSQNSISLPPFPGRECSLDQEG 676



 Score = 85.9 bits (211), Expect(2) = 5e-52
 Identities = 42/65 (64%), Positives = 53/65 (81%)
 Frame = -2

Query: 196 LMQNGMSSLRGVGSDGDSTNLPFASSNFMSTAGADFSLNPSMTPSSCIDESSYLQSPENA 17
           +MQ+GMS+LRGVGSD  ST + F S N+MSTAG+DFS+NP++TPSSCI ES +LQS ENA
Sbjct: 696 IMQSGMSNLRGVGSDCGSTTMHFPS-NYMSTAGSDFSINPAVTPSSCIHESGFLQSSENA 754

Query: 16  GQANP 2
              +P
Sbjct: 755 DNGDP 759


>ref|XP_004164684.1| PREDICTED: LOW QUALITY PROTEIN: auxin response factor 6-like, partial
            [Cucumis sativus]
          Length = 884

 Score =  227 bits (578), Expect = 6e-57
 Identities = 114/176 (64%), Positives = 131/176 (74%), Gaps = 2/176 (1%)
 Frame = -3

Query: 1395 NSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFNGMK 1216
            NSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWP GLPSF G+K
Sbjct: 314  NSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGLPSF-GIK 372

Query: 1215 DGDLGMNYPLTWLQGDSGDRGIQSLNFQ--GITPWMQPRINASMLGMQTXXXXXXXXXXX 1042
            D DLGMN P  WL+GD+ DRGIQ LNFQ  G++PWMQPR++ SM+GMQ+           
Sbjct: 373  DSDLGMNSPFMWLRGDNSDRGIQCLNFQGAGVSPWMQPRLDPSMMGMQS-DMYQVMATAA 431

Query: 1041 XXXXXXXXASKQASPSLVHFQQTQAVPGRSDGLLHPQMLQQSQSQASFLHSVGENQ 874
                     SK +  S++ FQQ Q++P +S  L+ PQML QSQ Q +FL SV ENQ
Sbjct: 432  LQEMRAIDYSKISPASVLQFQQPQSLPCQSSTLMQPQMLHQSQPQQAFLQSVQENQ 487



 Score =  130 bits (327), Expect(2) = 4e-48
 Identities = 60/93 (64%), Positives = 73/93 (78%)
 Frame = -3

Query: 585 NGNPVTSPVVSPLHSLLGSFPQDETSHLLNFSRSSALLTSAGWPPKRIAVDPLLSGASQS 406
           NGNP TSP VSPLHSL GSF QD++S LLN  R+ +++ SAGWP KR A+DPL +GASQ 
Sbjct: 569 NGNPATSPTVSPLHSLAGSFVQDDSSQLLNLQRAHSVIPSAGWPSKRAAIDPLCTGASQY 628

Query: 405 VMPQVEQLGPLHTNITQNAVSLPPFPGRECSID 307
            +PQVE LG   ++I+QN V+LPPFPGREC ID
Sbjct: 629 FLPQVEMLGTQQSSISQNTVALPPFPGRECPID 661



 Score = 89.0 bits (219), Expect(2) = 4e-48
 Identities = 45/65 (69%), Positives = 52/65 (80%)
 Frame = -2

Query: 196 LMQNGMSSLRGVGSDGDSTNLPFASSNFMSTAGADFSLNPSMTPSSCIDESSYLQSPENA 17
           LMQNGMS+LRGV +D  ST LPF SSN+MSTAG +F +NP+MT S+CIDES  LQS EN 
Sbjct: 685 LMQNGMSTLRGVCNDSVSTTLPF-SSNYMSTAGTNFPVNPTMTSSNCIDESGLLQSHENV 743

Query: 16  GQANP 2
           GQ NP
Sbjct: 744 GQVNP 748


>ref|XP_004150775.1| PREDICTED: auxin response factor 6-like [Cucumis sativus]
          Length = 899

 Score =  227 bits (578), Expect = 6e-57
 Identities = 114/176 (64%), Positives = 131/176 (74%), Gaps = 2/176 (1%)
 Frame = -3

Query: 1395 NSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFNGMK 1216
            NSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWP GLPSF G+K
Sbjct: 329  NSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGLPSF-GIK 387

Query: 1215 DGDLGMNYPLTWLQGDSGDRGIQSLNFQ--GITPWMQPRINASMLGMQTXXXXXXXXXXX 1042
            D DLGMN P  WL+GD+ DRGIQ LNFQ  G++PWMQPR++ SM+GMQ+           
Sbjct: 388  DSDLGMNSPFMWLRGDNSDRGIQCLNFQGAGVSPWMQPRLDPSMMGMQS-DMYQVMATAA 446

Query: 1041 XXXXXXXXASKQASPSLVHFQQTQAVPGRSDGLLHPQMLQQSQSQASFLHSVGENQ 874
                     SK +  S++ FQQ Q++P +S  L+ PQML QSQ Q +FL SV ENQ
Sbjct: 447  LQEMRAIDYSKISPASVLQFQQPQSLPCQSSTLMQPQMLHQSQPQQAFLQSVQENQ 502



 Score =  130 bits (327), Expect(2) = 4e-48
 Identities = 60/93 (64%), Positives = 73/93 (78%)
 Frame = -3

Query: 585 NGNPVTSPVVSPLHSLLGSFPQDETSHLLNFSRSSALLTSAGWPPKRIAVDPLLSGASQS 406
           NGNP TSP VSPLHSL GSF QD++S LLN  R+ +++ SAGWP KR A+DPL +GASQ 
Sbjct: 584 NGNPATSPTVSPLHSLAGSFVQDDSSQLLNLQRAHSVIPSAGWPSKRAAIDPLCTGASQY 643

Query: 405 VMPQVEQLGPLHTNITQNAVSLPPFPGRECSID 307
            +PQVE LG   ++I+QN V+LPPFPGREC ID
Sbjct: 644 FLPQVEMLGTQQSSISQNTVALPPFPGRECPID 676



 Score = 89.0 bits (219), Expect(2) = 4e-48
 Identities = 45/65 (69%), Positives = 52/65 (80%)
 Frame = -2

Query: 196 LMQNGMSSLRGVGSDGDSTNLPFASSNFMSTAGADFSLNPSMTPSSCIDESSYLQSPENA 17
           LMQNGMS+LRGV +D  ST LPF SSN+MSTAG +F +NP+MT S+CIDES  LQS EN 
Sbjct: 700 LMQNGMSTLRGVCNDSVSTTLPF-SSNYMSTAGTNFPVNPTMTSSNCIDESGLLQSHENV 758

Query: 16  GQANP 2
           GQ NP
Sbjct: 759 GQVNP 763


Top