BLASTX nr result
ID: Panax21_contig00000308
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax21_contig00000308
(919 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002269291.1| PREDICTED: F-box protein FBW2 isoform 1 [Vit... 394 e-107
ref|XP_002301066.1| predicted protein [Populus trichocarpa] gi|2... 347 2e-93
ref|XP_002513950.1| ubiquitin-protein ligase, putative [Ricinus ... 332 6e-89
ref|XP_002285756.2| PREDICTED: F-box protein FBW2 [Vitis vinifera] 328 8e-88
emb|CBI19188.3| unnamed protein product [Vitis vinifera] 328 8e-88
>ref|XP_002269291.1| PREDICTED: F-box protein FBW2 isoform 1 [Vitis vinifera]
gi|359496684|ref|XP_003635300.1| PREDICTED: F-box
protein FBW2 isoform 2 [Vitis vinifera]
gi|296085646|emb|CBI29445.3| unnamed protein product
[Vitis vinifera]
Length = 317
Score = 394 bits (1013), Expect = e-107
Identities = 204/303 (67%), Positives = 226/303 (74%)
Frame = -3
Query: 911 MEEGCNFRCWDELLPDALGLIFRNLPLQEILTVVPRVCKSWGRAVMGPYCWQEIDIEEWS 732
MEEGC FR WDEL+PDALGLIF NL LQEILTV+PRVCKSW + VMGPYCWQEIDI EWS
Sbjct: 1 MEEGCEFRSWDELIPDALGLIFSNLSLQEILTVIPRVCKSWRKTVMGPYCWQEIDIVEWS 60
Query: 731 RYQRPENIDRMLQMLIRRSCGSLRKLCVSGLSNDQTFSFIAVHAKSLQTLKSSRSAISDP 552
+ PEN+DRML+ML+ RS GS RKLCVSGL D +FSF+A HAKSLQTL+ RS ISDP
Sbjct: 61 QRSSPENLDRMLEMLMTRSAGSHRKLCVSGLPTDASFSFVADHAKSLQTLRLPRSEISDP 120
Query: 551 IVEQFAGMLSTITFLDLSYCINMGARGIEAIGKHCKFLTTLRRKMHPLEVIGKLSQDDEA 372
IVE+ A LSTITFLD+SYC MGA +EAIGKHCKFLT LRR MHPLE+I KL+QDDEA
Sbjct: 121 IVEEVAWKLSTITFLDVSYCRKMGAPALEAIGKHCKFLTGLRRIMHPLEIIDKLTQDDEA 180
Query: 371 LAIAATMPKLKHLEIAYLLLSTESVIXXXXXXXXXXXXXXXXXXXSVIEILTNCQLLELL 192
LAIAATMPKLKHLEIAYLL+STE V++IL +C LELL
Sbjct: 181 LAIAATMPKLKHLEIAYLLVSTE----------------------PVLKILASCCELELL 218
Query: 191 DVRGCWNVNLDEKFVKKFRGLKVVGPPVVDYYHEMNGWXXXXXXXXXXXXXAWDFVAGDM 12
DVRGCWNV LDEK +KKF GLKVVGP V+D Y E NGW AWDFVAG+M
Sbjct: 219 DVRGCWNVKLDEKLIKKFSGLKVVGPLVIDCY-EGNGWDDCSAYSGSSGYLAWDFVAGEM 277
Query: 11 DDY 3
D Y
Sbjct: 278 DYY 280
>ref|XP_002301066.1| predicted protein [Populus trichocarpa] gi|222842792|gb|EEE80339.1|
predicted protein [Populus trichocarpa]
Length = 321
Score = 347 bits (891), Expect = 2e-93
Identities = 183/305 (60%), Positives = 213/305 (69%), Gaps = 2/305 (0%)
Frame = -3
Query: 911 MEEGCNFRCWDELLPDALGLIFRNLPLQEILTVVPRVCKSWGRAVMGPYCWQEIDIEEWS 732
MEEG +R WDEL+PDALGLIFRNL LQEILT+VPRVCKSW RAV GPYCWQEI+IEEWS
Sbjct: 1 MEEGDEYRRWDELIPDALGLIFRNLSLQEILTMVPRVCKSWSRAVSGPYCWQEINIEEWS 60
Query: 731 RYQRPENIDRMLQMLIRRSCGSLRKLCVSGLSNDQTFSFIAVHAKSLQTLKSSRSAISDP 552
P+++DRMLQMLI RSCGSLRKLCVSGL ND FSF+A HA SLQTL+ RS I D
Sbjct: 61 TRCHPDHLDRMLQMLITRSCGSLRKLCVSGLHNDTNFSFLADHAGSLQTLRIPRSDIGDS 120
Query: 551 IVEQFAGMLSTITFLDLSYCINMGARGIEAIGKHCKFLTTLRRKMHPLEVIGKLSQDDEA 372
IVEQ AG LST+TFLD+SYC + R +EAIGKHCK L L R MHPL+ G +QDDEA
Sbjct: 121 IVEQIAGRLSTVTFLDVSYCNKISGRALEAIGKHCKLLVGLCRNMHPLDTEGLEAQDDEA 180
Query: 371 LAIAATMPKLKHLEIAYLLLSTESVIXXXXXXXXXXXXXXXXXXXSVIEILTNCQLLELL 192
AIA TMPKLK LE+AY L+STE S+++IL++C LE +
Sbjct: 181 YAIATTMPKLKRLEMAYHLVSTE----------------------SLLQILSSCTNLEFM 218
Query: 191 DVRGCWNVNLDEKFVK-KFRGLKVVGPPVVDYYHEMNGW-XXXXXXXXXXXXXAWDFVAG 18
D+RGCWNVNLD KF K KF+ L V+GP V++ Y+E N W AW F+AG
Sbjct: 219 DLRGCWNVNLDNKFFKEKFQKLTVLGPLVMEDYYEANDWEEDCSEYSDDSDYLAWGFLAG 278
Query: 17 DMDDY 3
D DY
Sbjct: 279 DGGDY 283
>ref|XP_002513950.1| ubiquitin-protein ligase, putative [Ricinus communis]
gi|223547036|gb|EEF48533.1| ubiquitin-protein ligase,
putative [Ricinus communis]
Length = 329
Score = 332 bits (852), Expect = 6e-89
Identities = 177/310 (57%), Positives = 216/310 (69%), Gaps = 7/310 (2%)
Frame = -3
Query: 911 MEEGCNFRCWDELLPDALGLIFRNLPLQEILTVVPRVCKSWGRAVMGPYCWQEIDIEEWS 732
ME+G +RCWDEL+PDALGLIFRNL LQEILTVVPRVCKSW RAV GPYCWQEIDIEEWS
Sbjct: 1 MEDGSEYRCWDELIPDALGLIFRNLSLQEILTVVPRVCKSWNRAVSGPYCWQEIDIEEWS 60
Query: 731 RYQRPENIDRMLQMLIRRSCGSLRKLCVSGLSNDQTFSFIAVHAKSLQTLKSSRSAISDP 552
++P +IDRML+MLI RSCGSLRKLCVSG+ +D F F+A HA SLQTL++ RS ISD
Sbjct: 61 NKRQPHHIDRMLRMLIARSCGSLRKLCVSGIPSDAIFPFLADHAGSLQTLRTPRSEISDS 120
Query: 551 IVEQFAGMLSTITFLDLSYCINMGARGIEAIGKHCKFLTTLRRKMHPLEVIGKLSQDDEA 372
IVEQ AG LSTITFLD+S+C + AR +EAIGK+CK L+ L R + +L QDDEA
Sbjct: 121 IVEQIAGRLSTITFLDVSHCNEISARALEAIGKNCKLLSGLCRNVELSSSANQLLQDDEA 180
Query: 371 LAIAATMPKLKHLEIAY-LLLSTESVIXXXXXXXXXXXXXXXXXXXSVIEILTNCQLLEL 195
AIA+TMPKLKHLE+AY LL++TE SV++IL++C LE
Sbjct: 181 QAIASTMPKLKHLEVAYHLLINTE----------------------SVLKILSSCPELEF 218
Query: 194 LDVRGCWNVNLDEKFV-KKFRGLKVVGPPVVDYYHEMNGW-----XXXXXXXXXXXXXAW 33
L++ GCW+V D F+ +KF LKVVGP ++DYY +MN W AW
Sbjct: 219 LNLTGCWDVKFDRNFLQEKFPKLKVVGPHLLDYY-DMNDWGDYCSEYSDAYSDASEYFAW 277
Query: 32 DFVAGDMDDY 3
+ +GDM+DY
Sbjct: 278 EIFSGDMEDY 287
>ref|XP_002285756.2| PREDICTED: F-box protein FBW2 [Vitis vinifera]
Length = 296
Score = 328 bits (842), Expect = 8e-88
Identities = 177/279 (63%), Positives = 206/279 (73%), Gaps = 3/279 (1%)
Frame = -3
Query: 911 MEEGCNFRCWDELLPDALGLIFRNLPLQEILTVVPRVCKSWGRAVMGPYCWQEIDIEEWS 732
MEE + R WDEL+PDALGLIFRNL L+EILTV+PRVCKSW AV GPYCWQEIDI EWS
Sbjct: 1 MEEESDIRRWDELIPDALGLIFRNLSLREILTVIPRVCKSWDEAVKGPYCWQEIDIGEWS 60
Query: 731 RYQRPENIDRMLQMLIRRSCGSLRKLCVSGLSNDQTFSFIAVHAKSLQTLKSSRSAISDP 552
Q PE++DRML++LIRRSCGSLRKLCV GL ND+ SFIA HA SLQTL+ RS ISD
Sbjct: 61 D-QWPEHLDRMLEILIRRSCGSLRKLCVFGLQNDRLLSFIAEHAGSLQTLQLIRSEISDS 119
Query: 551 IVEQFAGMLSTITFLDLSYCINMGARGIEAIGKHCKFLTTLRRKMHPLEVIGKLSQDDEA 372
+VE+ AG ST+TFLD+S C MG+R +EAIGK+CK L L R MHPL GKLSQD+EA
Sbjct: 120 LVEEIAGRFSTLTFLDVSCCNKMGSRALEAIGKNCKSLVGLCRNMHPLTTAGKLSQDEEA 179
Query: 371 LAIAATMPKLKHLEIAYLLLSTESVIXXXXXXXXXXXXXXXXXXXSVIEILTNCQLLELL 192
AIA TMPKLKHLE+AY LLST+ SV+EIL+ C LELL
Sbjct: 180 HAIATTMPKLKHLEMAYHLLSTK----------------------SVLEILSCCPELELL 217
Query: 191 DVRGCWNVNLDEKFVK-KFRGLKVVGPPVVDY--YHEMN 84
D+RGCW+V L+ KF+K KF L+V+GP VVDY Y+EMN
Sbjct: 218 DLRGCWHVELNVKFLKEKFPKLRVLGPVVVDYCRYYEMN 256
>emb|CBI19188.3| unnamed protein product [Vitis vinifera]
Length = 292
Score = 328 bits (842), Expect = 8e-88
Identities = 177/279 (63%), Positives = 206/279 (73%), Gaps = 3/279 (1%)
Frame = -3
Query: 911 MEEGCNFRCWDELLPDALGLIFRNLPLQEILTVVPRVCKSWGRAVMGPYCWQEIDIEEWS 732
MEE + R WDEL+PDALGLIFRNL L+EILTV+PRVCKSW AV GPYCWQEIDI EWS
Sbjct: 1 MEEESDIRRWDELIPDALGLIFRNLSLREILTVIPRVCKSWDEAVKGPYCWQEIDIGEWS 60
Query: 731 RYQRPENIDRMLQMLIRRSCGSLRKLCVSGLSNDQTFSFIAVHAKSLQTLKSSRSAISDP 552
Q PE++DRML++LIRRSCGSLRKLCV GL ND+ SFIA HA SLQTL+ RS ISD
Sbjct: 61 D-QWPEHLDRMLEILIRRSCGSLRKLCVFGLQNDRLLSFIAEHAGSLQTLQLIRSEISDS 119
Query: 551 IVEQFAGMLSTITFLDLSYCINMGARGIEAIGKHCKFLTTLRRKMHPLEVIGKLSQDDEA 372
+VE+ AG ST+TFLD+S C MG+R +EAIGK+CK L L R MHPL GKLSQD+EA
Sbjct: 120 LVEEIAGRFSTLTFLDVSCCNKMGSRALEAIGKNCKSLVGLCRNMHPLTTAGKLSQDEEA 179
Query: 371 LAIAATMPKLKHLEIAYLLLSTESVIXXXXXXXXXXXXXXXXXXXSVIEILTNCQLLELL 192
AIA TMPKLKHLE+AY LLST+ SV+EIL+ C LELL
Sbjct: 180 HAIATTMPKLKHLEMAYHLLSTK----------------------SVLEILSCCPELELL 217
Query: 191 DVRGCWNVNLDEKFVK-KFRGLKVVGPPVVDY--YHEMN 84
D+RGCW+V L+ KF+K KF L+V+GP VVDY Y+EMN
Sbjct: 218 DLRGCWHVELNVKFLKEKFPKLRVLGPVVVDYCRYYEMN 256