BLASTX nr result

ID: Panax21_contig00000203 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00000203
         (699 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267256.2| PREDICTED: RRP12-like protein-like [Vitis vi...   146   1e-41
emb|CBI29601.3| unnamed protein product [Vitis vinifera]              146   1e-41
ref|XP_004159374.1| PREDICTED: LOW QUALITY PROTEIN: RRP12-like p...   136   6e-32
ref|XP_004144131.1| PREDICTED: RRP12-like protein-like [Cucumis ...   136   6e-32
ref|XP_002326302.1| predicted protein [Populus trichocarpa] gi|2...   124   9e-31

>ref|XP_002267256.2| PREDICTED: RRP12-like protein-like [Vitis vinifera]
          Length = 1439

 Score =  146 bits (369), Expect(2) = 1e-41
 Identities = 75/100 (75%), Positives = 83/100 (83%)
 Frame = +2

Query: 134  VVLVRAQLFDLAVSLLPGLNPKETDLLFVAIEHGLKDSDGLIQKKAYKVLSIILQNSEGF 313
            + LVRAQLFDLAVSLLPGLN KE DLLFVA +  L+D +GLIQKKAYKVLSIIL+N + F
Sbjct: 880  LALVRAQLFDLAVSLLPGLNAKEIDLLFVATKPALRDDEGLIQKKAYKVLSIILRNCDTF 939

Query: 314  ISRKLEELLNLMIEVLPSCHFPAKRHRLSCLYFLIVYVSK 433
            +S K EELL LMIEVLPSCHF AK HRL CLY LIV+ SK
Sbjct: 940  LSAKFEELLKLMIEVLPSCHFSAKHHRLECLYSLIVHASK 979



 Score = 49.3 bits (116), Expect(2) = 1e-41
 Identities = 26/36 (72%), Positives = 27/36 (75%)
 Frame = +3

Query: 33  TMQNLLKVTQEAGKAEKSRNSKLMEIDNYSTEISLS 140
           TMQ LLKVTQEAG AE SRNS  MEIDN S   SL+
Sbjct: 846 TMQKLLKVTQEAGNAETSRNSNTMEIDNSSNGSSLA 881


>emb|CBI29601.3| unnamed protein product [Vitis vinifera]
          Length = 1230

 Score =  146 bits (369), Expect(2) = 1e-41
 Identities = 75/100 (75%), Positives = 83/100 (83%)
 Frame = +2

Query: 134 VVLVRAQLFDLAVSLLPGLNPKETDLLFVAIEHGLKDSDGLIQKKAYKVLSIILQNSEGF 313
           + LVRAQLFDLAVSLLPGLN KE DLLFVA +  L+D +GLIQKKAYKVLSIIL+N + F
Sbjct: 670 LALVRAQLFDLAVSLLPGLNAKEIDLLFVATKPALRDDEGLIQKKAYKVLSIILRNCDTF 729

Query: 314 ISRKLEELLNLMIEVLPSCHFPAKRHRLSCLYFLIVYVSK 433
           +S K EELL LMIEVLPSCHF AK HRL CLY LIV+ SK
Sbjct: 730 LSAKFEELLKLMIEVLPSCHFSAKHHRLECLYSLIVHASK 769



 Score = 49.3 bits (116), Expect(2) = 1e-41
 Identities = 26/36 (72%), Positives = 27/36 (75%)
 Frame = +3

Query: 33  TMQNLLKVTQEAGKAEKSRNSKLMEIDNYSTEISLS 140
           TMQ LLKVTQEAG AE SRNS  MEIDN S   SL+
Sbjct: 636 TMQKLLKVTQEAGNAETSRNSNTMEIDNSSNGSSLA 671


>ref|XP_004159374.1| PREDICTED: LOW QUALITY PROTEIN: RRP12-like protein-like [Cucumis
           sativus]
          Length = 1265

 Score =  136 bits (343), Expect(2) = 6e-32
 Identities = 70/99 (70%), Positives = 81/99 (81%), Gaps = 2/99 (2%)
 Frame = +2

Query: 143 VRAQLFDLAVSLLPGLNPKETDLLFVAIEHGLK--DSDGLIQKKAYKVLSIILQNSEGFI 316
           +RAQ++DLAVS LPGLN KE D+LFVA++  LK  D DGLIQKKAYKVLS IL+ S+ F+
Sbjct: 699 MRAQMYDLAVSFLPGLNSKEIDVLFVAVKSALKEQDCDGLIQKKAYKVLSAILKTSDEFL 758

Query: 317 SRKLEELLNLMIEVLPSCHFPAKRHRLSCLYFLIVYVSK 433
           S K +ELL LMIEVLP CHF AKRHRL CLYFLIV V+K
Sbjct: 759 STKFDELLTLMIEVLPLCHFSAKRHRLDCLYFLIVQVAK 797



 Score = 26.9 bits (58), Expect(2) = 6e-32
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = +3

Query: 33  TMQNLLKVTQEAGKAEKSRNSKLMEIDNYSTEISLS 140
           TM+ LLK+TQ+A K E  + S  M+ID+ +   S S
Sbjct: 663 TMRKLLKLTQQAAKVE-PKVSNSMQIDDSTNANSSS 697


>ref|XP_004144131.1| PREDICTED: RRP12-like protein-like [Cucumis sativus]
          Length = 1264

 Score =  136 bits (343), Expect(2) = 6e-32
 Identities = 70/99 (70%), Positives = 81/99 (81%), Gaps = 2/99 (2%)
 Frame = +2

Query: 143 VRAQLFDLAVSLLPGLNPKETDLLFVAIEHGLK--DSDGLIQKKAYKVLSIILQNSEGFI 316
           +RAQ++DLAVS LPGLN KE D+LFVA++  LK  D DGLIQKKAYKVLS IL+ S+ F+
Sbjct: 698 MRAQMYDLAVSFLPGLNSKEIDVLFVAVKSALKEQDCDGLIQKKAYKVLSAILKTSDEFL 757

Query: 317 SRKLEELLNLMIEVLPSCHFPAKRHRLSCLYFLIVYVSK 433
           S K +ELL LMIEVLP CHF AKRHRL CLYFLIV V+K
Sbjct: 758 STKFDELLTLMIEVLPLCHFSAKRHRLDCLYFLIVQVAK 796



 Score = 26.9 bits (58), Expect(2) = 6e-32
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = +3

Query: 33  TMQNLLKVTQEAGKAEKSRNSKLMEIDNYSTEISLS 140
           TM+ LLK+TQ+A K E  + S  M+ID+ +   S S
Sbjct: 662 TMRKLLKLTQQAAKVE-PKVSNSMQIDDSTNANSSS 696


>ref|XP_002326302.1| predicted protein [Populus trichocarpa] gi|222833495|gb|EEE71972.1|
           predicted protein [Populus trichocarpa]
          Length = 1029

 Score =  124 bits (310), Expect(2) = 9e-31
 Identities = 59/95 (62%), Positives = 79/95 (83%)
 Frame = +2

Query: 149 AQLFDLAVSLLPGLNPKETDLLFVAIEHGLKDSDGLIQKKAYKVLSIILQNSEGFISRKL 328
           A+LFDLA+SLLPGL+ ++ ++L+ A++  L+D +GLIQK+AYKVLSIILQ  +GFI+ + 
Sbjct: 488 ARLFDLAISLLPGLDGEQINVLYSAVKPALQDMEGLIQKRAYKVLSIILQRYDGFITPRF 547

Query: 329 EELLNLMIEVLPSCHFPAKRHRLSCLYFLIVYVSK 433
            ELL LMI+VLPSCHF AKRHRL C+Y LIV++ K
Sbjct: 548 GELLQLMIDVLPSCHFSAKRHRLDCIYCLIVHIPK 582



 Score = 35.8 bits (81), Expect(2) = 9e-31
 Identities = 19/36 (52%), Positives = 25/36 (69%)
 Frame = +3

Query: 33  TMQNLLKVTQEAGKAEKSRNSKLMEIDNYSTEISLS 140
           TMQ LL VTQ+A KA+ SR+S  M ID+ S +  L+
Sbjct: 448 TMQKLLAVTQKATKADNSRDSISMRIDDSSNDSRLA 483


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