BLASTX nr result

ID: Panax21_contig00000160 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00000160
         (1176 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002327002.1| predicted protein [Populus trichocarpa] gi|2...   285   6e-75
ref|XP_003622549.1| Nuclear pore glycoprotein [Medicago truncatu...   278   2e-72
emb|CBI16624.3| unnamed protein product [Vitis vinifera]              275   1e-71
ref|XP_002274231.1| PREDICTED: uncharacterized protein LOC100265...   275   1e-71
ref|XP_002880150.1| hypothetical protein ARALYDRAFT_483630 [Arab...   273   6e-71

>ref|XP_002327002.1| predicted protein [Populus trichocarpa] gi|222835317|gb|EEE73752.1|
           predicted protein [Populus trichocarpa]
          Length = 241

 Score =  285 bits (728), Expect(2) = 6e-75
 Identities = 143/160 (89%), Positives = 153/160 (95%)
 Frame = -3

Query: 481 PKLPSEITGKTVEEIIKEWNAELQERTGKFRKQATAIAEWDRRILQNRDVLLRLETEVAN 302
           PKLPSEITGKTVEEIIKEWN+ELQERTGKFRKQATAIAEWD+RILQNRDVLLRLE EVA 
Sbjct: 37  PKLPSEITGKTVEEIIKEWNSELQERTGKFRKQATAIAEWDKRILQNRDVLLRLEIEVAK 96

Query: 301 VVETQTNLERQLELIETHQEEVDKALQSMEDEAERIYKDERGPLLDDEAASTRDAMYEQA 122
           VVETQ NLER+LELIETHQ+EVDKALQS+E+EAERIYKDERG LLDDEAASTRDAMYEQA
Sbjct: 97  VVETQANLERKLELIETHQQEVDKALQSIEEEAERIYKDERGSLLDDEAASTRDAMYEQA 156

Query: 121 EFIERELEQMTEQIKSIIQAVNANQAGELEATDGMTPLDV 2
           EFIERE+EQMTEQIKS+IQ VNANQ GEL+A DGMTPLD+
Sbjct: 157 EFIEREMEQMTEQIKSVIQTVNANQGGELDAIDGMTPLDM 196



 Score = 23.9 bits (50), Expect(2) = 6e-75
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 608 PCFNFYSWNNFKYQFCCSV 552
           PCFN  ++NNF++ +C  +
Sbjct: 4   PCFNCCTYNNFQH-YCSDI 21


>ref|XP_003622549.1| Nuclear pore glycoprotein [Medicago truncatula]
           gi|355497564|gb|AES78767.1| Nuclear pore glycoprotein
           [Medicago truncatula]
          Length = 299

 Score =  278 bits (710), Expect = 2e-72
 Identities = 141/159 (88%), Positives = 151/159 (94%)
 Frame = -3

Query: 481 PKLPSEITGKTVEEIIKEWNAELQERTGKFRKQATAIAEWDRRILQNRDVLLRLETEVAN 302
           PKLPSEITGKTVEEIIKEWNAELQERTGKFRKQA AIAEWDRRILQNRDVLLRLE EVA 
Sbjct: 92  PKLPSEITGKTVEEIIKEWNAELQERTGKFRKQANAIAEWDRRILQNRDVLLRLEIEVAK 151

Query: 301 VVETQTNLERQLELIETHQEEVDKALQSMEDEAERIYKDERGPLLDDEAASTRDAMYEQA 122
           VVETQ++LERQLELIETHQ+EVDKALQS+E+EAERIYKDERG LLDDEAASTRDAMYEQ+
Sbjct: 152 VVETQSSLERQLELIETHQQEVDKALQSVEEEAERIYKDERGLLLDDEAASTRDAMYEQS 211

Query: 121 EFIERELEQMTEQIKSIIQAVNANQAGELEATDGMTPLD 5
           E IERELEQMTEQIKSII ++N+NQ GE+EA DGMTPLD
Sbjct: 212 ELIERELEQMTEQIKSIIHSLNSNQGGEVEAPDGMTPLD 250


>emb|CBI16624.3| unnamed protein product [Vitis vinifera]
          Length = 808

 Score =  275 bits (704), Expect = 1e-71
 Identities = 139/160 (86%), Positives = 148/160 (92%)
 Frame = -3

Query: 481  PKLPSEITGKTVEEIIKEWNAELQERTGKFRKQATAIAEWDRRILQNRDVLLRLETEVAN 302
            PK+PSEITGKTVEEIIKEWN ELQERTGKFRKQATAIAEWD++ILQNRDVLLRLE EVA 
Sbjct: 601  PKMPSEITGKTVEEIIKEWNTELQERTGKFRKQATAIAEWDKKILQNRDVLLRLEIEVAK 660

Query: 301  VVETQTNLERQLELIETHQEEVDKALQSMEDEAERIYKDERGPLLDDEAASTRDAMYEQA 122
            VVETQ  LERQLELIETHQ+EVDKAL S+E+EAERIYKDERG LLDDEAASTRDAMYEQA
Sbjct: 661  VVETQAQLERQLELIETHQQEVDKALLSIEEEAERIYKDERGLLLDDEAASTRDAMYEQA 720

Query: 121  EFIERELEQMTEQIKSIIQAVNANQAGELEATDGMTPLDV 2
            EFIERE+EQMTEQIKSIIQ +N NQ GEL+  DGMTPLDV
Sbjct: 721  EFIEREMEQMTEQIKSIIQTLNTNQGGELDVMDGMTPLDV 760


>ref|XP_002274231.1| PREDICTED: uncharacterized protein LOC100265039 [Vitis vinifera]
          Length = 775

 Score =  275 bits (704), Expect = 1e-71
 Identities = 139/160 (86%), Positives = 148/160 (92%)
 Frame = -3

Query: 481  PKLPSEITGKTVEEIIKEWNAELQERTGKFRKQATAIAEWDRRILQNRDVLLRLETEVAN 302
            PK+PSEITGKTVEEIIKEWN ELQERTGKFRKQATAIAEWD++ILQNRDVLLRLE EVA 
Sbjct: 568  PKMPSEITGKTVEEIIKEWNTELQERTGKFRKQATAIAEWDKKILQNRDVLLRLEIEVAK 627

Query: 301  VVETQTNLERQLELIETHQEEVDKALQSMEDEAERIYKDERGPLLDDEAASTRDAMYEQA 122
            VVETQ  LERQLELIETHQ+EVDKAL S+E+EAERIYKDERG LLDDEAASTRDAMYEQA
Sbjct: 628  VVETQAQLERQLELIETHQQEVDKALLSIEEEAERIYKDERGLLLDDEAASTRDAMYEQA 687

Query: 121  EFIERELEQMTEQIKSIIQAVNANQAGELEATDGMTPLDV 2
            EFIERE+EQMTEQIKSIIQ +N NQ GEL+  DGMTPLDV
Sbjct: 688  EFIEREMEQMTEQIKSIIQTLNTNQGGELDVMDGMTPLDV 727


>ref|XP_002880150.1| hypothetical protein ARALYDRAFT_483630 [Arabidopsis lyrata subsp.
            lyrata] gi|297325989|gb|EFH56409.1| hypothetical protein
            ARALYDRAFT_483630 [Arabidopsis lyrata subsp. lyrata]
          Length = 737

 Score =  273 bits (698), Expect = 6e-71
 Identities = 138/160 (86%), Positives = 149/160 (93%)
 Frame = -3

Query: 481  PKLPSEITGKTVEEIIKEWNAELQERTGKFRKQATAIAEWDRRILQNRDVLLRLETEVAN 302
            PKLPSEITGKTVEEIIKEWN ELQERTG+FRKQA AIAEWD+RILQNRDVLLRLE EVA 
Sbjct: 530  PKLPSEITGKTVEEIIKEWNTELQERTGRFRKQANAIAEWDKRILQNRDVLLRLEIEVAK 589

Query: 301  VVETQTNLERQLELIETHQEEVDKALQSMEDEAERIYKDERGPLLDDEAASTRDAMYEQA 122
            VVETQ++LERQLELIETHQ+EVDKALQSME+EAERIY DER  LLDDEAASTRDAMYEQ+
Sbjct: 590  VVETQSSLERQLELIETHQQEVDKALQSMEEEAERIYNDERKSLLDDEAASTRDAMYEQS 649

Query: 121  EFIERELEQMTEQIKSIIQAVNANQAGELEATDGMTPLDV 2
            E +ERELE MTEQI+SIIQ+VNANQ GELEA DGM+PLDV
Sbjct: 650  ELVERELEHMTEQIRSIIQSVNANQGGELEAIDGMSPLDV 689


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