BLASTX nr result

ID: Panax21_contig00000125 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00000125
         (691 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284548.2| PREDICTED: SWI/SNF complex subunit SWI3C-lik...    62   1e-07
emb|CBI18988.3| unnamed protein product [Vitis vinifera]               62   1e-07
emb|CAN83645.1| hypothetical protein VITISV_016194 [Vitis vinifera]    62   1e-07
ref|XP_002520335.1| DNA binding protein, putative [Ricinus commu...    56   6e-06

>ref|XP_002284548.2| PREDICTED: SWI/SNF complex subunit SWI3C-like [Vitis vinifera]
          Length = 771

 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 28/45 (62%), Positives = 34/45 (75%), Gaps = 2/45 (4%)
 Frame = -3

Query: 686 MVQNNAGNTRQQVVP--PSQPFISGYGNNQPIHPHVSPMQQQPTF 558
           +V NN GN RQQ++   PSQP ISGYGNNQ +HPH+S M +QP F
Sbjct: 699 LVSNNTGNNRQQIISASPSQPSISGYGNNQQMHPHMSFMPRQPMF 743


>emb|CBI18988.3| unnamed protein product [Vitis vinifera]
          Length = 675

 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 28/45 (62%), Positives = 34/45 (75%), Gaps = 2/45 (4%)
 Frame = -3

Query: 686 MVQNNAGNTRQQVVP--PSQPFISGYGNNQPIHPHVSPMQQQPTF 558
           +V NN GN RQQ++   PSQP ISGYGNNQ +HPH+S M +QP F
Sbjct: 581 LVSNNTGNNRQQIISASPSQPSISGYGNNQQMHPHMSFMPRQPMF 625


>emb|CAN83645.1| hypothetical protein VITISV_016194 [Vitis vinifera]
          Length = 334

 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 28/45 (62%), Positives = 34/45 (75%), Gaps = 2/45 (4%)
 Frame = -3

Query: 686 MVQNNAGNTRQQVVP--PSQPFISGYGNNQPIHPHVSPMQQQPTF 558
           +V NN GN RQQ++   PSQP ISGYGNNQ +HPH+S M +QP F
Sbjct: 240 LVSNNTGNNRQQIISASPSQPSISGYGNNQQMHPHMSFMPRQPMF 284


>ref|XP_002520335.1| DNA binding protein, putative [Ricinus communis]
           gi|223540554|gb|EEF42121.1| DNA binding protein,
           putative [Ricinus communis]
          Length = 771

 Score = 56.2 bits (134), Expect = 6e-06
 Identities = 40/95 (42%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
 Frame = -3

Query: 686 MVQNNAGNTRQQVVPPS--QPFISGYGNNQPIHPHVSPMQQ---QPTFXXXXXXXXXXXX 522
           M  NN G++RQQV+P S  QP ISGYGNNQ +HPH+S MQ+   QP F            
Sbjct: 676 MGNNNIGSSRQQVMPTSSSQPSISGYGNNQQVHPHMSFMQRGQPQPMFPVGPRLPLAAIQ 735

Query: 521 XXXXXXXNV---------NTPRAMLRSVSGTRSGL 444
                  N+          +   MLRSVSG  SGL
Sbjct: 736 PSSSAPSNIMYNASGNSQPSLNQMLRSVSGPSSGL 770


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