BLASTX nr result

ID: Panax21_contig00000051 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00000051
         (687 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI32841.3| unnamed protein product [Vitis vinifera]              135   6e-30
ref|XP_002322597.1| global transcription factor group [Populus t...   131   1e-28
ref|XP_004171804.1| PREDICTED: transcription elongation factor S...   129   4e-28
ref|XP_004152869.1| PREDICTED: transcription elongation factor S...   129   4e-28
ref|XP_002278416.2| PREDICTED: transcription elongation factor S...   129   4e-28

>emb|CBI32841.3| unnamed protein product [Vitis vinifera]
          Length = 1646

 Score =  135 bits (341), Expect = 6e-30
 Identities = 66/75 (88%), Positives = 69/75 (92%)
 Frame = -3

Query: 661 RMNELEDAKETPEEMASNFTCAMFETPQNVLRGARHMAAVEISCELCVRKHVRSIFMDNV 482
           RM+ELEDAKE PEEMASNFTCAMFETPQ VL+GARHMAAVEISCE CVRKHVRSI+MDN 
Sbjct: 527 RMDELEDAKEPPEEMASNFTCAMFETPQAVLKGARHMAAVEISCEPCVRKHVRSIYMDNA 586

Query: 481 VVSTSPTSDGNVAID 437
           VVSTSPT DGNV ID
Sbjct: 587 VVSTSPTPDGNVVID 601


>ref|XP_002322597.1| global transcription factor group [Populus trichocarpa]
           gi|222867227|gb|EEF04358.1| global transcription factor
           group [Populus trichocarpa]
          Length = 1216

 Score =  131 bits (329), Expect = 1e-28
 Identities = 62/75 (82%), Positives = 70/75 (93%)
 Frame = -3

Query: 661 RMNELEDAKETPEEMASNFTCAMFETPQNVLRGARHMAAVEISCELCVRKHVRSIFMDNV 482
           +M+EL+DAKETPEEMASNFTCAMFE+PQ VL+GARHMAAVEISCE CVR++VR IFMDN 
Sbjct: 308 KMDELQDAKETPEEMASNFTCAMFESPQTVLKGARHMAAVEISCEPCVRRYVRFIFMDNA 367

Query: 481 VVSTSPTSDGNVAID 437
           VVSTSPT+DGN AID
Sbjct: 368 VVSTSPTADGNAAID 382


>ref|XP_004171804.1| PREDICTED: transcription elongation factor SPT6-like, partial
           [Cucumis sativus]
          Length = 1322

 Score =  129 bits (325), Expect = 4e-28
 Identities = 62/75 (82%), Positives = 68/75 (90%)
 Frame = -3

Query: 661 RMNELEDAKETPEEMASNFTCAMFETPQNVLRGARHMAAVEISCELCVRKHVRSIFMDNV 482
           R +ELED KETPEEMASNFTCAMFE+PQ VL+GARHMAA+EISCE CVRKHVRS FMD  
Sbjct: 509 RNDELEDPKETPEEMASNFTCAMFESPQAVLKGARHMAAIEISCEPCVRKHVRSYFMDYA 568

Query: 481 VVSTSPTSDGNVAID 437
           V+STSPT+DGNVAID
Sbjct: 569 VISTSPTADGNVAID 583



 Score = 56.2 bits (134), Expect = 6e-06
 Identities = 28/38 (73%), Positives = 32/38 (84%), Gaps = 1/38 (2%)
 Frame = -1

Query: 438 ILKFMTDHQPHVV-LRAVNLSCTRLTEDIYEVSDKDLE 328
           +LKFMTDHQPHVV L AVNLSCTRL +DIYE+  K +E
Sbjct: 775 VLKFMTDHQPHVVVLGAVNLSCTRLKDDIYEIIFKMVE 812


>ref|XP_004152869.1| PREDICTED: transcription elongation factor SPT6-like [Cucumis
           sativus]
          Length = 1631

 Score =  129 bits (325), Expect = 4e-28
 Identities = 62/75 (82%), Positives = 68/75 (90%)
 Frame = -3

Query: 661 RMNELEDAKETPEEMASNFTCAMFETPQNVLRGARHMAAVEISCELCVRKHVRSIFMDNV 482
           R +ELED KETPEEMASNFTCAMFE+PQ VL+GARHMAA+EISCE CVRKHVRS FMD  
Sbjct: 509 RNDELEDPKETPEEMASNFTCAMFESPQAVLKGARHMAAIEISCEPCVRKHVRSYFMDYA 568

Query: 481 VVSTSPTSDGNVAID 437
           V+STSPT+DGNVAID
Sbjct: 569 VISTSPTADGNVAID 583



 Score = 56.2 bits (134), Expect = 6e-06
 Identities = 28/38 (73%), Positives = 32/38 (84%), Gaps = 1/38 (2%)
 Frame = -1

Query: 438 ILKFMTDHQPHVV-LRAVNLSCTRLTEDIYEVSDKDLE 328
           +LKFMTDHQPHVV L AVNLSCTRL +DIYE+  K +E
Sbjct: 775 VLKFMTDHQPHVVVLGAVNLSCTRLKDDIYEIIFKMVE 812


>ref|XP_002278416.2| PREDICTED: transcription elongation factor SPT6-like [Vitis
           vinifera]
          Length = 1660

 Score =  129 bits (325), Expect = 4e-28
 Identities = 63/71 (88%), Positives = 65/71 (91%)
 Frame = -3

Query: 649 LEDAKETPEEMASNFTCAMFETPQNVLRGARHMAAVEISCELCVRKHVRSIFMDNVVVST 470
           LEDAKE PEEMASNFTCAMFETPQ VL+GARHMAAVEISCE CVRKHVRSI+MDN VVST
Sbjct: 526 LEDAKEPPEEMASNFTCAMFETPQAVLKGARHMAAVEISCEPCVRKHVRSIYMDNAVVST 585

Query: 469 SPTSDGNVAID 437
           SPT DGNV ID
Sbjct: 586 SPTPDGNVVID 596


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