BLASTX nr result

ID: Panax21_contig00000023 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00000023
         (1595 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_175226.1| filament-like plant protein 6 [Arabidopsis thal...   141   4e-31
ref|NP_001185167.1| filament-like plant protein 6 [Arabidopsis t...   141   4e-31
ref|XP_002894079.1| hypothetical protein ARALYDRAFT_336913 [Arab...   136   2e-29
emb|CAC87837.1| cullin 1C [Nicotiana tabacum]                         125   3e-26
gb|ABB77428.1| cullin 1-like protein C [Petunia integrifolia sub...   124   7e-26

>ref|NP_175226.1| filament-like plant protein 6 [Arabidopsis thaliana]
            gi|75169070|sp|Q9C698.1|FPP6_ARATH RecName:
            Full=Filament-like plant protein 6; Short=AtFPP6
            gi|12323626|gb|AAG51782.1|AC079679_2 mysoin-like protein;
            11013-7318 [Arabidopsis thaliana]
            gi|332194105|gb|AEE32226.1| filament-like plant protein 6
            [Arabidopsis thaliana]
          Length = 1054

 Score =  141 bits (356), Expect = 4e-31
 Identities = 77/159 (48%), Positives = 102/159 (64%), Gaps = 17/159 (10%)
 Frame = +3

Query: 1170 MDRKSWSWKKNHLIRQLLRKQLPH*NPLVPLQLDLRVSRI---TTKKTKYVQISVESYTH 1340
            MDR+SW WKK    + +L         ++    D   S+I     KK KYVQISVE YTH
Sbjct: 1    MDRRSWPWKKKASDKSIL---------VIDSAADASHSQIDKEAIKKPKYVQISVEQYTH 51

Query: 1341 LTGLEDEVKSY--------------EDQVNSYEDQVKTFEDQVTSYEVQVTSYEDQVKAL 1478
             TGLE+++KSY              E+QV SYE+QVK FE+Q+ +Y+ +V  YE+QV+ L
Sbjct: 52   FTGLEEQIKSYDVQIKGYDVQVKTYENQVESYEEQVKDFEEQIDAYDEKVHEYEEQVQKL 111

Query: 1479 EDEVEELNEKLSAANLELTMKESLVKQHAKVVEEAVSGW 1595
             ++VE+LNEKLS AN E+  KE+LVKQH+KV E+AVSGW
Sbjct: 112  NEDVEDLNEKLSVANEEIVTKEALVKQHSKVAEDAVSGW 150


>ref|NP_001185167.1| filament-like plant protein 6 [Arabidopsis thaliana]
            gi|332194106|gb|AEE32227.1| filament-like plant protein 6
            [Arabidopsis thaliana]
          Length = 1052

 Score =  141 bits (356), Expect = 4e-31
 Identities = 77/159 (48%), Positives = 102/159 (64%), Gaps = 17/159 (10%)
 Frame = +3

Query: 1170 MDRKSWSWKKNHLIRQLLRKQLPH*NPLVPLQLDLRVSRI---TTKKTKYVQISVESYTH 1340
            MDR+SW WKK    + +L         ++    D   S+I     KK KYVQISVE YTH
Sbjct: 1    MDRRSWPWKKKASDKSIL---------VIDSAADASHSQIDKEAIKKPKYVQISVEQYTH 51

Query: 1341 LTGLEDEVKSY--------------EDQVNSYEDQVKTFEDQVTSYEVQVTSYEDQVKAL 1478
             TGLE+++KSY              E+QV SYE+QVK FE+Q+ +Y+ +V  YE+QV+ L
Sbjct: 52   FTGLEEQIKSYDVQIKGYDVQVKTYENQVESYEEQVKDFEEQIDAYDEKVHEYEEQVQKL 111

Query: 1479 EDEVEELNEKLSAANLELTMKESLVKQHAKVVEEAVSGW 1595
             ++VE+LNEKLS AN E+  KE+LVKQH+KV E+AVSGW
Sbjct: 112  NEDVEDLNEKLSVANEEIVTKEALVKQHSKVAEDAVSGW 150


>ref|XP_002894079.1| hypothetical protein ARALYDRAFT_336913 [Arabidopsis lyrata subsp.
            lyrata] gi|297339921|gb|EFH70338.1| hypothetical protein
            ARALYDRAFT_336913 [Arabidopsis lyrata subsp. lyrata]
          Length = 1058

 Score =  136 bits (342), Expect = 2e-29
 Identities = 73/159 (45%), Positives = 102/159 (64%), Gaps = 17/159 (10%)
 Frame = +3

Query: 1170 MDRKSWSWKKNHLIRQLLRKQLPH*NPLVPLQLDLRVSRI---TTKKTKYVQISVESYTH 1340
            MDR+SW WKK    + +L         ++    D   S+I     KK K+VQISVE YTH
Sbjct: 1    MDRRSWPWKKKASDKSIL---------VIDSAADASHSQIEKEAIKKPKFVQISVEQYTH 51

Query: 1341 LTGLEDE--------------VKSYEDQVNSYEDQVKTFEDQVTSYEVQVTSYEDQVKAL 1478
             TGLE++              VK+YE+QV SYE++VK FE+Q+ +Y+ +V  YE+QV+ L
Sbjct: 52   FTGLEEQIKTYDVQIKSYDVQVKTYENQVESYEERVKDFEEQIDAYDEKVHEYEEQVQKL 111

Query: 1479 EDEVEELNEKLSAANLELTMKESLVKQHAKVVEEAVSGW 1595
             +++++LNEKLS AN E+  KE+LVKQH+KV E+AVSGW
Sbjct: 112  NEDIDDLNEKLSVANEEIVTKEALVKQHSKVAEDAVSGW 150


>emb|CAC87837.1| cullin 1C [Nicotiana tabacum]
          Length = 447

 Score =  125 bits (314), Expect = 3e-26
 Identities = 61/67 (91%), Positives = 64/67 (95%)
 Frame = +1

Query: 733 SVSCSIVSIMKSRKVLGYQQLVMECVEQLGRMFKPDVKAIKKRIEDLITRDYLERDKDNP 912
           ++  SIV IMKSRKVLGYQQLVMECVEQLGRMFKPDVKAIKKRIEDLITRDYLERDKDNP
Sbjct: 381 AIDASIVRIMKSRKVLGYQQLVMECVEQLGRMFKPDVKAIKKRIEDLITRDYLERDKDNP 440

Query: 913 NLFRYLA 933
           NLF+YLA
Sbjct: 441 NLFKYLA 447


>gb|ABB77428.1| cullin 1-like protein C [Petunia integrifolia subsp. inflata]
          Length = 742

 Score =  124 bits (311), Expect = 7e-26
 Identities = 60/67 (89%), Positives = 64/67 (95%)
 Frame = +1

Query: 733 SVSCSIVSIMKSRKVLGYQQLVMECVEQLGRMFKPDVKAIKKRIEDLITRDYLERDKDNP 912
           ++  SIV IMKSRKVLGYQ+LVMECVEQLGRMFKPDVKAIKKRIEDLITRDYLERDKDNP
Sbjct: 676 AIDASIVRIMKSRKVLGYQELVMECVEQLGRMFKPDVKAIKKRIEDLITRDYLERDKDNP 735

Query: 913 NLFRYLA 933
           NLF+YLA
Sbjct: 736 NLFKYLA 742


Top