BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia25_contig00043688
         (562 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004148188.1| PREDICTED: uncharacterized protein LOC101204...   109   4e-22
ref|XP_004173856.1| PREDICTED: putative ribonuclease H protein A...   109   6e-22
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   105   6e-21
ref|XP_004174148.1| PREDICTED: uncharacterized protein LOC101232...   104   1e-20
gb|ABV21212.1| Ty1_Copia-element protein [Arabidopsis thaliana]       100   3e-19
ref|NP_176271.1| RNA-directed DNA polymerase (reverse transcript...    97   3e-18
ref|XP_004163799.1| PREDICTED: putative ribonuclease H protein A...    96   5e-18
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]            96   5e-18
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ...    96   6e-18
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...    96   6e-18
gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]               94   3e-17
gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CA...    93   4e-17
emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|72678...    92   7e-17
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal...    92   1e-16
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]        91   2e-16
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00...    91   2e-16
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...    91   2e-16
dbj|BAB01431.1| non-LTR retroelement reverse transcriptase-like ...    91   3e-16
dbj|BAE98403.1| putative non-LTR reverse transcriptase [Arabidop...    91   3e-16
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...    91   3e-16

>ref|XP_004148188.1| PREDICTED: uncharacterized protein LOC101204314 [Cucumis sativus]
          Length = 282

 Score =  109 bits (273), Expect = 4e-22
 Identities = 64/164 (39%), Positives = 90/164 (54%), Gaps = 3/164 (1%)
 Frame = -2

Query: 519 GPLLLRYGERIVQEANSGLRDRVAIYV-QNGAWRWPLPRSPDLAGIFET--GNSVSTSLE 349
           GP++ ++GER++ +A S    R+  ++ ++G WRWPL    DL  I++   G  +S S+E
Sbjct: 37  GPIIQQFGERVIYDAGSRWDARLVDFMGRDGDWRWPLVYL-DLMDIWDRVQGVRLSPSVE 95

Query: 348 PDKVIWDLTCDKKFSIRSLWNFNRHKAEEVQWSHFVWFSKAIKKHAFCLWLAIRGALMTQ 169
            D+ +W       FSI S W   R  +  V WS  +W    I KH+FC WLAIR  L T+
Sbjct: 96  -DRWVWVPGSHDSFSITSAWETIRPHSSRVGWSGLLWGGGNIPKHSFCAWLAIRDRLGTR 154

Query: 168 DRIKGWGMSGANRCYLCGSDEETRDHLFFACGLSSSILVDILRL 37
            R+  W  S    C LCG + E+RDHLFF+C     I   IL L
Sbjct: 155 GRLSRWDRSIPLSCLLCGGNYESRDHLFFSCHFGWEIWSRILLL 198


>ref|XP_004173856.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Cucumis
           sativus]
          Length = 342

 Score =  109 bits (272), Expect = 6e-22
 Identities = 63/163 (38%), Positives = 88/163 (53%), Gaps = 3/163 (1%)
 Frame = -2

Query: 561 GTNTLLWHDNWHPFGPLLLRYGERIVQEANSGLRDRVAIYV-QNGAWRWPLPRSPDLAGI 385
           G    +W   W   GP++ ++GER++ +A S    R+  ++ +NG WRW L  S DL  I
Sbjct: 96  GRKCRVWLVPWIQGGPIIQQFGERVIYDAGSRWDVRLVDFMGRNGDWRWSLV-SLDLMDI 154

Query: 384 FETGNSV--STSLEPDKVIWDLTCDKKFSIRSLWNFNRHKAEEVQWSHFVWFSKAIKKHA 211
           ++    V  S S+E D+ +W       FSI S W   R  +  V WS  +W    I KH+
Sbjct: 155 WDRVQGVRPSPSVE-DRWVWVPGSRDSFSITSAWETIRPHSSRVGWSGLLWGGGNIPKHS 213

Query: 210 FCLWLAIRGALMTQDRIKGWGMSGANRCYLCGSDEETRDHLFF 82
           FC WLAIR  L T+DR+  W  S    C LCG + E+R+HLFF
Sbjct: 214 FCAWLAIRDRLSTRDRLSRWDRSIPLSCLLCGGNYESRNHLFF 256


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  105 bits (263), Expect = 6e-21
 Identities = 67/182 (36%), Positives = 85/182 (46%), Gaps = 8/182 (4%)
 Frame = -2

Query: 561  GTNTLLWHDNWHPFGPLLLRYGERIVQEANSGLRDRVAIYVQNGAW--RWPLPRSPDLAG 388
            G  T  W+DNW   G LL R G+R + +   G+  R+ +     AW  R       D+  
Sbjct: 951  GKQTSFWYDNWSDLGQLLERTGDRGLIDL--GISRRMTV---EEAWTNRRQRRHRNDVYN 1005

Query: 387  IFETG--NSVSTSLEP-DKVIWDLTCD---KKFSIRSLWNFNRHKAEEVQWSHFVWFSKA 226
            + E     S  T  E  DKV+W    D     FS R  W+  R  +  V W   +WFS A
Sbjct: 1006 VIEDALKKSWDTRTETEDKVLWRGKSDVFRTTFSTRDTWHHTRSTSARVPWHKVIWFSHA 1065

Query: 225  IKKHAFCLWLAIRGALMTQDRIKGWGMSGANRCYLCGSDEETRDHLFFACGLSSSILVDI 46
              K++FC WLA  G L T DR+  W    A  C  C    ETRDHLFF C  +S I VD+
Sbjct: 1066 TPKYSFCSWLAAHGRLPTGDRMINWANGIATDCIFCQGTLETRDHLFFTCSFTSVIWVDL 1125

Query: 45   LR 40
             R
Sbjct: 1126 AR 1127


>ref|XP_004174148.1| PREDICTED: uncharacterized protein LOC101232502 [Cucumis sativus]
          Length = 191

 Score =  104 bits (260), Expect = 1e-20
 Identities = 62/162 (38%), Positives = 86/162 (53%), Gaps = 2/162 (1%)
 Frame = -2

Query: 561 GTNTLLWHDNWHPFGPLLLRYGERIVQEANSGLRDRVAIYV-QNGAWRWPLPRSPDLAGI 385
           G    +W D W   G ++ ++GER++ +A S    R+  ++ Q+G WR PL  S DL  I
Sbjct: 6   GKKCRVWLDPWIQGGAIIQQFGERVIYDAGSQRDARLVDFMGQDGDWRCPLV-SLDLMDI 64

Query: 384 FETGNSVSTSLE-PDKVIWDLTCDKKFSIRSLWNFNRHKAEEVQWSHFVWFSKAIKKHAF 208
           ++    V  SL   D+ +W       FSI S+W   R  +  V WS  +W    I KH+F
Sbjct: 65  WDRIQGVWPSLSVEDRWVWVPGSLDSFSIASVWETIRPHSSRVGWSGLLWGGGNIPKHSF 124

Query: 207 CLWLAIRGALMTQDRIKGWGMSGANRCYLCGSDEETRDHLFF 82
             WLAIR  L T+DR+  W  S    C LCG + E+RDHLFF
Sbjct: 125 YAWLAIRDMLGTRDRLSRWDRSIPLSCMLCGRNFESRDHLFF 166


>gb|ABV21212.1| Ty1_Copia-element protein [Arabidopsis thaliana]
          Length = 438

 Score =  100 bits (248), Expect = 3e-19
 Identities = 59/173 (34%), Positives = 78/173 (45%), Gaps = 5/173 (2%)
 Frame = -2

Query: 561 GTNTLLWHDNWHPFGPLLLRYGERIVQEANSGLRDRVAIYVQNGAWRWPLPRSPDLAGIF 382
           G     W D+W PFGPLL   G    +     L  +VA  V    W  P PRS +   + 
Sbjct: 216 GLTASFWADSWTPFGPLLTFIGSDGPRNQRIPLCSKVADVVNGNRWLLPSPRSSNALNLH 275

Query: 381 ETGNSVSTSLEP---DKVIWDLT--CDKKFSIRSLWNFNRHKAEEVQWSHFVWFSKAIKK 217
               ++S  L+P   D  +W +    D  FS    WN  RHK  E  W   VWF     K
Sbjct: 276 AFLTTLSIPLQPLVEDSYLWKVENCSDIGFSSAHTWNALRHKEVEKPWVSSVWFKGVTPK 335

Query: 216 HAFCLWLAIRGALMTQDRIKGWGMSGANRCYLCGSDEETRDHLFFACGLSSSI 58
           +AF +W+  +  L T+ R+  WG   +  C LC    ETRDHL  +C  S S+
Sbjct: 336 NAFNMWITHQDRLRTKLRMIAWGFLVSPVCALCQVGFETRDHLMLSCDFSVSV 388


>ref|NP_176271.1| RNA-directed DNA polymerase (reverse transcriptase)-related protein
           [Arabidopsis thaliana] gi|332195602|gb|AEE33723.1|
           RNA-directed DNA polymerase (reverse
           transcriptase)-related protein [Arabidopsis thaliana]
          Length = 289

 Score = 97.1 bits (240), Expect = 3e-18
 Identities = 56/177 (31%), Positives = 90/177 (50%), Gaps = 7/177 (3%)
 Frame = -2

Query: 543 WHDNWHPFGPLLLRYGERIVQEANSGLRDRVAIYVQNGAWRWPLPRSPDLAGIFETGNSV 364
           WHD+W   GPL+   G+   +     L  RV   +    W+ PL RS     I +  +++
Sbjct: 26  WHDSWTSLGPLIKVMGDYGSRSLRIPLNARVVEALGVNGWKLPLSRSAPAQAIHDHISTI 85

Query: 363 ST----SLEP--DKVIWDLTCDKKFSIRSLWNFNRHKAEEVQWSHFVWFSKAIKKHAFCL 202
           +T    ++E   D V+  + C + FS    W+  R +A E+ W+  VWF  A+ KHAF +
Sbjct: 86  TTPSPATIEDSFDWVVGGVVC-QGFSSARTWDAIRPRAPELDWAKAVWFKGAVPKHAFNM 144

Query: 201 WLAIRGALMTQDRIKGWGMSGANRCYLCGSDEETRDHLFFACGLSSSI-LVDILRLC 34
           W++    L T+ R+  WG   +  C LC  + E+RDHL F+C  ++ +  +   RLC
Sbjct: 145 WISQLDRLPTRQRLASWGHIQSFDCCLCTIETESRDHLLFSCEFAAQVWRLAFSRLC 201


>ref|XP_004163799.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Cucumis
           sativus]
          Length = 288

 Score = 96.3 bits (238), Expect = 5e-18
 Identities = 65/188 (34%), Positives = 94/188 (50%), Gaps = 3/188 (1%)
 Frame = -2

Query: 561 GTNTLLWHDNWHPFGPLLLRYGERIVQEANSGLRDRVAIYV-QNGAWRWPLPRSPDLAGI 385
           G    +W D     GP++ ++GER++ +A+S    R+  ++ ++G WRW L  S DL  I
Sbjct: 98  GKKCRVWLDPRIQGGPIIQQFGERVIYDADSRRDARLVDFMGRDGDWRWSLV-SLDLMDI 156

Query: 384 FETGNSV--STSLEPDKVIWDLTCDKKFSIRSLWNFNRHKAEEVQWSHFVWFSKAIKKHA 211
           ++    V  S S+E D  +      + FSI S     R  +  V WS  +W    I KH+
Sbjct: 157 WDRIQGVRPSPSVE-DMWVRVPGSHESFSIVSACEAIRPHSSRVGWSGLLWGGGNIPKHS 215

Query: 210 FCLWLAIRGALMTQDRIKGWGMSGANRCYLCGSDEETRDHLFFACGLSSSILVDILRLCL 31
           F  WLAI+  L T+DR+  W  S    C LCG + E+RDHLFF C     I   IL    
Sbjct: 216 FYTWLAIKDRLGTRDRLSRWDSSIPLSCILCGRNYESRDHLFFPCPFGWEIWSRILLFMS 275

Query: 30  ITGGVRTW 7
            +  +R W
Sbjct: 276 SSHRIRYW 283


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score = 96.3 bits (238), Expect = 5e-18
 Identities = 62/192 (32%), Positives = 82/192 (42%), Gaps = 7/192 (3%)
 Frame = -2

Query: 561  GTNTLLWHDNWHPFGPLLLRYGERIVQEANSGLRDRVAIYVQNGAWRWPLPRSPDLAGIF 382
            G     W D W   GPL+   G+   +        +VA  +    WR PL RS     I 
Sbjct: 803  GGTVSFWFDCWTSLGPLIKYLGDVGSRPLRIPFSAKVADAIDGSGWRLPLSRSLTADSIL 862

Query: 381  ETGNSV---STSLEPDKVIW---DLTCDKKFSIRSLWNFNRHKAEEVQWSHFVWFSKAIK 220
                S+   S  +  D   W   D+ C + FS    W   R +    +W+  VWF  A+ 
Sbjct: 863  SHLASLPPPSPLMVSDSYSWCVDDVDC-QGFSAAKTWEVLRPRRPVKRWARSVWFKGAVP 921

Query: 219  KHAFCLWLAIRGALMTQDRIKGWGMSGANRCYLCGSDEETRDHLFFACGLSSSI-LVDIL 43
            KHAF  W A    L T+ R+  WG+  +  C LC  D ETRDHL   C  SS +  +  L
Sbjct: 922  KHAFNFWTAQLNRLPTRQRLVSWGLVSSAECCLCSFDTETRDHLLLLCDFSSQVWRMVFL 981

Query: 42   RLCLITGGVRTW 7
            RLC     + TW
Sbjct: 982  RLCPRQRLLCTW 993


>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
            thaliana]
          Length = 1072

 Score = 95.9 bits (237), Expect = 6e-18
 Identities = 62/192 (32%), Positives = 82/192 (42%), Gaps = 7/192 (3%)
 Frame = -2

Query: 561  GTNTLLWHDNWHPFGPLLLRYGERIVQEANSGLRDRVAIYVQNGAWRWPLPRSPDLAGIF 382
            G     W D W   GPL+   G+   +        +VA  +    WR PL RS     I 
Sbjct: 803  GGTVSFWFDCWTSLGPLIKYLGDVGSRPLRIPFSAKVADAIDGSGWRLPLSRSLTADSIL 862

Query: 381  ETGNSV---STSLEPDKVIW---DLTCDKKFSIRSLWNFNRHKAEEVQWSHFVWFSKAIK 220
                S+   S  +  D   W   D+ C + FS    W   R +    +W+  VWF  A+ 
Sbjct: 863  SHLASLPPPSPLMVSDSYSWCVDDVDC-QGFSAAKTWEVLRPRRPVKRWAKSVWFKGAVP 921

Query: 219  KHAFCLWLAIRGALMTQDRIKGWGMSGANRCYLCGSDEETRDHLFFACGLSSSI-LVDIL 43
            KHAF  W A    L T+ R+  WG+  +  C LC  D ETRDHL   C  SS +  +  L
Sbjct: 922  KHAFNFWTAQLNRLPTRQRLVSWGLVSSAECCLCSFDTETRDHLLLLCDFSSQVWRMVFL 981

Query: 42   RLCLITGGVRTW 7
            RLC     + TW
Sbjct: 982  RLCPRQRLLCTW 993


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
            [Arabidopsis thaliana]
          Length = 1164

 Score = 95.9 bits (237), Expect = 6e-18
 Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 5/175 (2%)
 Frame = -2

Query: 561  GTNTLLWHDNWHPFGPLLLRYGERIVQEANSGLRDRVAIYVQNGAWRWPLPRSPDLAGIF 382
            G +   W DNW PFGPL+   G    ++    L  +++    +  W    PRS     + 
Sbjct: 841  GRDASFWFDNWTPFGPLIKFLGNEGPRDLRVHLNAKISDVCTSEGWSIADPRSDQALSLH 900

Query: 381  ETGNSVSTSLEP-DKVIWDLTCDKK----FSIRSLWNFNRHKAEEVQWSHFVWFSKAIKK 217
                ++S   +  D   +D   D K    FS  + W+  R  +  V W+  VWF  A  K
Sbjct: 901  THLTNISMPSDAQDLDSYDWVVDNKVCQGFSAAATWSALRPSSAPVPWARAVWFKGATPK 960

Query: 216  HAFCLWLAIRGALMTQDRIKGWGMSGANRCYLCGSDEETRDHLFFACGLSSSILV 52
            HAF LW A    L T+ R+  WGM     C LC    ETRDHLF +C  ++ + +
Sbjct: 961  HAFHLWTAHLDRLPTKVRLASWGMQIDTTCGLCSLHPETRDHLFLSCDFANFLCI 1015


>gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]
          Length = 1161

 Score = 93.6 bits (231), Expect = 3e-17
 Identities = 54/176 (30%), Positives = 76/176 (43%), Gaps = 8/176 (4%)
 Frame = -2

Query: 561  GTNTLLWHDNWHPFGPLLLRYGERIVQEANSGLRDRVAIYVQNGAWRWPLPRSPD----- 397
            G     WHDNW   GPLL   G      A   L   V   +++  WR    RS +     
Sbjct: 876  GVTASFWHDNWTDHGPLLHLTGPAGPLLAGLPLNSVVRDALRDDTWRISSSRSRNPVITL 935

Query: 396  LAGIFETGNSVSTSLEPDKVIWDL---TCDKKFSIRSLWNFNRHKAEEVQWSHFVWFSKA 226
            L  +  +  S+      D  +W +       +FS    W++ +  +  V W   VWF   
Sbjct: 936  LQRVLPSAASLIDCPHDDTYLWKIGHHAPSNRFSTADTWSYLQPSSTSVLWHKAVWFKDH 995

Query: 225  IKKHAFCLWLAIRGALMTQDRIKGWGMSGANRCYLCGSDEETRDHLFFACGLSSSI 58
            + K AF  W+     L T+DR++ WG S    C LC   +E+R+HLFF C  SS I
Sbjct: 996  VPKQAFICWVVAHNRLHTRDRLRRWGFSIPPTCVLCNDLDESREHLFFRCQFSSEI 1051


>gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CAB80742.1| AT4g02490
            [Arabidopsis thaliana]
          Length = 657

 Score = 93.2 bits (230), Expect = 4e-17
 Identities = 56/182 (30%), Positives = 76/182 (41%), Gaps = 8/182 (4%)
 Frame = -2

Query: 561  GTNTLLWHDNWHPFGPLLLRYGERIVQEANSGLRDRVAIYVQNGAWRWPLPRSPD----- 397
            G     W DNW   GPL+   G    Q     +   V   ++N  W     RS +     
Sbjct: 472  GITARFWQDNWTGHGPLIHLTGLTGPQLVGLSITSVVRDAIRNDDWWIASSRSRNPVILL 531

Query: 396  LAGIFETGNSVSTSLEPDKVIW---DLTCDKKFSIRSLWNFNRHKAEEVQWSHFVWFSKA 226
            L  +     ++      D  +W   D     KFS    W   +  +  V W   VWF+  
Sbjct: 532  LKSLLPPVGNLVDCEHDDSYLWKVGDRVPSSKFSTADTWRALQPFSVSVSWHKAVWFTNQ 591

Query: 225  IKKHAFCLWLAIRGALMTQDRIKGWGMSGANRCYLCGSDEETRDHLFFACGLSSSILVDI 46
            + KHAF  W+     L T+DR++ WG+     C LC   +ETRDHLFFAC  SS I    
Sbjct: 592  VPKHAFISWVTAWNRLHTRDRLRSWGLIVPAECVLCNLVDETRDHLFFACRFSSRIWTFF 651

Query: 45   LR 40
            +R
Sbjct: 652  MR 653


>emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|7267871|emb|CAB78214.1|
           putative protein [Arabidopsis thaliana]
          Length = 473

 Score = 92.4 bits (228), Expect = 7e-17
 Identities = 57/175 (32%), Positives = 84/175 (48%), Gaps = 7/175 (4%)
 Frame = -2

Query: 561 GTNTLLWHDNWHPFGPLLLRYGERIVQEANSGLRDRVAIYVQNGAWRWPLPRSPDLAGIF 382
           G  T  W+D+W   G L+   G+R     + G+     +    G  R    R+  L  + 
Sbjct: 200 GARTSFWYDDWSDLGRLIDSAGDR--GAIDLGINKHATVVEAWGNRRRRRHRTNFLNRVE 257

Query: 381 E----TGNSVSTSLEPDKVIW---DLTCDKKFSIRSLWNFNRHKAEEVQWSHFVWFSKAI 223
           E    + NS + +   D+ +W   +      FS +  WN  R  + +V W   VWF++AI
Sbjct: 258 ERLILSWNSRNQA--EDRALWKGKENRFRSIFSTKDTWNHIRTVSNKVAWYKGVWFAQAI 315

Query: 222 KKHAFCLWLAIRGALMTQDRIKGWGMSGANRCYLCGSDEETRDHLFFACGLSSSI 58
            KHAFC+WLA+   L T DR+  W M     C LC    E+RDHLFF+C  ++ I
Sbjct: 316 PKHAFCMWLAVHNRLSTGDRMTLWNMGVDATCILCNKALESRDHLFFSCPFATEI 370


>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score = 91.7 bits (226), Expect = 1e-16
 Identities = 57/178 (32%), Positives = 76/178 (42%), Gaps = 4/178 (2%)
 Frame = -2

Query: 561 GTNTLLWHDNWHPFGPLLLRYGERIVQEANSGLRDRVAIYVQNGAWR-WPLPRSPDLAGI 385
           G  T  W DNW   G L+   G+R   +        VA    N   R     +  D+   
Sbjct: 356 GARTSFWFDNWSGMGHLMDVTGQRGQIDLGISRNKTVAEAWSNRRRRKHRTEQLNDIEAA 415

Query: 384 FETGNSVSTSLEPDKVIWDLTCD---KKFSIRSLWNFNRHKAEEVQWSHFVWFSKAIKKH 214
                     L  D  +W    D     FS +  WN  R K+ EV W   VWFS +  K+
Sbjct: 416 LNQKYQTRNLLREDATLWRGKGDVFKTSFSTKDTWNQVRKKSNEVAWYKGVWFSHSTPKY 475

Query: 213 AFCLWLAIRGALMTQDRIKGWGMSGANRCYLCGSDEETRDHLFFACGLSSSILVDILR 40
            FC WLA+R  L T  R++ W      +C  C +  ETRDHLFF+C  +S+I   I +
Sbjct: 476 QFCTWLALRNRLSTGYRMQLWNNGSDVKCTFCSTSIETRDHLFFSCSYASAIWTAIAK 533


>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score = 91.3 bits (225), Expect = 2e-16
 Identities = 54/169 (31%), Positives = 79/169 (46%), Gaps = 7/169 (4%)
 Frame = -2

Query: 543  WHDNWHPFGPLLLRYGERIVQEANSGLRDRVAIYVQNGAWRWPLPRSPDLAGIFETGNSV 364
            W+DNW   GPL    G+         L  +VA       WR P+ RS    GI +   +V
Sbjct: 949  WYDNWTSLGPLFRIIGDIGPSSLRVPLLAKVASAFSEDGWRLPVSRSAPAKGIHDHLCTV 1008

Query: 363  ---STSLEP-DKVIWDLT---CDKKFSIRSLWNFNRHKAEEVQWSHFVWFSKAIKKHAFC 205
               ST+ E  D+  W +    C + FS    W   R KA    W+  +WF  A+ K+AF 
Sbjct: 1009 PVPSTAQEDVDRYEWSVNGFLC-QGFSAAKTWEAIRPKATVKSWASSIWFKGAVPKYAFN 1067

Query: 204  LWLAIRGALMTQDRIKGWGMSGANRCYLCGSDEETRDHLFFACGLSSSI 58
            +W++    L+T+ R+  WG   ++ C LC    E+RDHL   C  S+ +
Sbjct: 1068 MWVSHLNRLLTRQRLASWGHIQSDACVLCSFASESRDHLLLICEFSAQV 1116


>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
            thaliana]
          Length = 1253

 Score = 91.3 bits (225), Expect = 2e-16
 Identities = 52/174 (29%), Positives = 76/174 (43%), Gaps = 6/174 (3%)
 Frame = -2

Query: 561  GTNTLLWHDNWHPFGPLLLRYGERIVQEANSGLRDRVAIYVQNGAWRWPLPRSPDLAGIF 382
            G     W DNW P GPL   +G    +     ++ +VA    +  W    PR+     + 
Sbjct: 815  GKKISFWFDNWSPLGPLFKLFGSSGPRALCIPIQAKVADACSDVGWLISPPRTDQALALL 874

Query: 381  ETGNSVSTSL---EPDKVIW---DLTCDKKFSIRSLWNFNRHKAEEVQWSHFVWFSKAIK 220
                +++       PD  +W   D TC   FS    W   R K     W+  VWF  ++ 
Sbjct: 875  IHLTTIALPCFDSSPDTFVWIVDDFTCHG-FSAARTWEAMRPKKPVKDWTKSVWFKGSVP 933

Query: 219  KHAFCLWLAIRGALMTQDRIKGWGMSGANRCYLCGSDEETRDHLFFACGLSSSI 58
            KHAF +W++    L T+ R+  WG++    C LC S  E+RDHL   C  S+ I
Sbjct: 934  KHAFNMWVSHLNRLPTRQRLAAWGVTTTTDCCLCSSRPESRDHLLLYCVFSAVI 987


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score = 91.3 bits (225), Expect = 2e-16
 Identities = 61/196 (31%), Positives = 88/196 (44%), Gaps = 10/196 (5%)
 Frame = -2

Query: 561  GTNTLLWHDNWHPFGPLLLRYGERIVQEANSGLRDRVAIYVQNGAWRWPLPRSPDLAGIF 382
            G++T  W+D+W   G LL   G R V +    L   +   ++    R         A I+
Sbjct: 1248 GSSTSFWYDHWSHLGRLLDITGTRRVIDLGIPLETNLETVLRTHQHR------QHRAAIY 1301

Query: 381  ETGNSVSTSLE-------PDKVIW-DLTCD--KKFSIRSLWNFNRHKAEEVQWSHFVWFS 232
               N+    L+       PD  +W  L  D  K+F  +  WN  R    +  W   VWF 
Sbjct: 1302 NRINAEIQRLQQQEREAGPDISLWRSLKNDFNKRFITKVTWNNVRTHQPQQNWYKGVWFP 1361

Query: 231  KAIKKHAFCLWLAIRGALMTQDRIKGWGMSGANRCYLCGSDEETRDHLFFACGLSSSILV 52
             +  K++F LWL ++  L T DRIK W       C LC + EETRDHLFF+C  +S +  
Sbjct: 1362 YSTPKYSFLLWLTVQNRLSTGDRIKAWNSGQLVTCTLCNNAEETRDHLFFSCQYTSYVWE 1421

Query: 51   DILRLCLITGGVRTWD 4
             + +  L T   R W+
Sbjct: 1422 ALTQRLLSTNYSRDWN 1437


>dbj|BAB01431.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 637

 Score = 90.5 bits (223), Expect = 3e-16
 Identities = 59/190 (31%), Positives = 80/190 (42%), Gaps = 5/190 (2%)
 Frame = -2

Query: 561 GTNTLLWHDNWHPFGPLLLRYGERIVQEANSGLRDRVAIYVQNGAWRWPLPRSPDLAGIF 382
           GT T  WHD+W P G L    G R     + G+  +  +       R    R+  L  I 
Sbjct: 174 GTTTSFWHDHWSPLGRLHQHLGSR--GTIDLGIATQATVAEVLDTHRRKRHRADFLNQIE 231

Query: 381 ETGNSV--STSLEPDKVIWDLTCDK---KFSIRSLWNFNRHKAEEVQWSHFVWFSKAIKK 217
                V  + S E D+ +W    D     FS    W   R  + E +W   VWF  +  K
Sbjct: 232 NHIELVRQARSQESDRSLWKQKEDSFKGSFSSPKTWQQIRTISNECEWYRGVWFPSSTPK 291

Query: 216 HAFCLWLAIRGALMTQDRIKGWGMSGANRCYLCGSDEETRDHLFFACGLSSSILVDILRL 37
           ++F  WLA    L T DR+  W       C  C  + ETRDHLFF+C  SS I + + + 
Sbjct: 292 YSFVTWLAFHNRLATGDRLYKWNSEARATCVFCDEELETRDHLFFSCPYSSQIWIALAKG 351

Query: 36  CLITGGVRTW 7
            L    V +W
Sbjct: 352 LLNGRNVSSW 361


>dbj|BAE98403.1| putative non-LTR reverse transcriptase [Arabidopsis thaliana]
          Length = 278

 Score = 90.5 bits (223), Expect = 3e-16
 Identities = 59/190 (31%), Positives = 80/190 (42%), Gaps = 5/190 (2%)
 Frame = -2

Query: 561 GTNTLLWHDNWHPFGPLLLRYGERIVQEANSGLRDRVAIYVQNGAWRWPLPRSPDLAGIF 382
           GT T  WHD+W P G L    G R     + G+  +  +       R    R+  L  I 
Sbjct: 6   GTTTSFWHDHWSPLGRLHQHLGSR--GTIDLGIATQATVAEVLDTHRRKRHRADFLNQIE 63

Query: 381 ETGNSV--STSLEPDKVIWDLTCDK---KFSIRSLWNFNRHKAEEVQWSHFVWFSKAIKK 217
                V  + S E D+ +W    D     FS    W   R  + E +W   VWF  +  K
Sbjct: 64  NHIELVRQARSQESDRSLWKQKEDSFKGSFSSPKTWQQIRTISNECEWYRGVWFPSSTPK 123

Query: 216 HAFCLWLAIRGALMTQDRIKGWGMSGANRCYLCGSDEETRDHLFFACGLSSSILVDILRL 37
           ++F  WLA    L T DR+  W       C  C  + ETRDHLFF+C  SS I + + + 
Sbjct: 124 YSFVTWLAFHNRLATGDRLYKWNSEARATCVFCDEELETRDHLFFSCPYSSQIWIALAKG 183

Query: 36  CLITGGVRTW 7
            L    V +W
Sbjct: 184 LLNGRNVSSW 193


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1216

 Score = 90.5 bits (223), Expect = 3e-16
 Identities = 62/186 (33%), Positives = 80/186 (43%), Gaps = 12/186 (6%)
 Frame = -2

Query: 561  GTNTLLWHDNWHPFGPLLLRYGERIVQEANSGLRDRVAIYVQNGAWRWPLPRSP----DL 394
            G NT  W DNW   GPL+   G R     + G+   + +     A  W   R      ++
Sbjct: 672  GVNTSFWFDNWSEKGPLINLTGAR--GAIDMGISRHMTL-----AEAWSRRRRKRHRVEI 724

Query: 393  AGIFET-----GNSVSTSLEPDKVIWDLTCD---KKFSIRSLWNFNRHKAEEVQWSHFVW 238
               FE          +  LE D ++W    D    +FS +  WN  R  + +  W   VW
Sbjct: 725  LNEFEEILLQKYQHRNIELE-DAILWRGKEDVFKARFSTKDTWNHIRTSSNQRAWHKGVW 783

Query: 237  FSKAIKKHAFCLWLAIRGALMTQDRIKGWGMSGANRCYLCGSDEETRDHLFFACGLSSSI 58
            F+ A  K +FC WLAIR  L T DR+  W       C  C S  ETRDHLFF C  SS I
Sbjct: 784  FAHATPKFSFCAWLAIRNRLSTGDRMMTWNNGTPTTCVFCSSPMETRDHLFFQCCYSSEI 843

Query: 57   LVDILR 40
               I +
Sbjct: 844  WTSIAK 849