BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia25_contig00024681
         (1260 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006472187.1| PREDICTED: RNA pseudouridine synthase 1-like...   441   e-121
ref|XP_006433526.1| hypothetical protein CICLE_v10001637mg [Citr...   436   e-119
ref|XP_007205588.1| hypothetical protein PRUPE_ppa008866mg [Prun...   436   e-119
ref|XP_002512503.1| ribosomal pseudouridine synthase, putative [...   431   e-118
ref|XP_007031141.1| Pseudouridine synthase family protein isofor...   426   e-116
ref|XP_007031140.1| Pseudouridine synthase family protein isofor...   426   e-116
ref|XP_004304865.1| PREDICTED: RNA pseudourine synthase 1-like [...   422   e-115
gb|EXC51319.1| RNA pseudourine synthase 1 [Morus notabilis]           412   e-112
ref|XP_002278016.2| PREDICTED: RNA pseudourine synthase 1-like [...   409   e-111
gb|EXB98832.1| RNA pseudourine synthase 1 [Morus notabilis]           408   e-111
ref|XP_006344754.1| PREDICTED: RNA pseudouridine synthase 1-like...   404   e-110
ref|XP_004230301.1| PREDICTED: RNA pseudourine synthase 1-like [...   403   e-109
ref|XP_004144814.1| PREDICTED: RNA pseudourine synthase 1-like [...   400   e-109
ref|XP_004158751.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudour...   400   e-109
emb|CBI39587.3| unnamed protein product [Vitis vinifera]              389   e-105
gb|EYU37245.1| hypothetical protein MIMGU_mgv1a010081mg [Mimulus...   369   1e-99
ref|XP_006392435.1| hypothetical protein EUTSA_v10023586mg [Eutr...   369   2e-99
ref|XP_006302538.1| hypothetical protein CARUB_v10020638mg [Caps...   365   3e-98
ref|XP_002894642.1| pseudouridine synthase family protein [Arabi...   361   4e-97
dbj|BAK01967.1| predicted protein [Hordeum vulgare subsp. vulgare]    360   5e-97

>ref|XP_006472187.1| PREDICTED: RNA pseudouridine synthase 1-like [Citrus sinensis]
          Length = 324

 Score =  441 bits (1134), Expect = e-121
 Identities = 226/324 (69%), Positives = 264/324 (81%), Gaps = 1/324 (0%)
 Frame = -2

Query: 1118 SDSSSTKDLNTLTNYXXXXXXXXXXXSKQIELSRAMSASSRSGLYTLSRSDVLFEDEWLI 939
            ++ +S     T  NY           SK IEL+RAMSASS+S LY LSRSDVL+EDEWL+
Sbjct: 5    TEPTSQNAPQTQQNYPTPLSPPLPAISKDIELTRAMSASSKSSLYKLSRSDVLYEDEWLV 64

Query: 938  VVNKPQGVYCERVLASVPSIL-NDSADSDRRNEADGHSRATQSSLPELHLANRLDRDTSG 762
             VNKPQGVYCE VLASVP +L  DSA+S     ++G    T+ +L ELHLANRLDRDTSG
Sbjct: 65   AVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEG----TKLNLLELHLANRLDRDTSG 120

Query: 761  VMVITKSNKVAAKLVKAFTNHKVNKTYIALCIGPAPKWEKITISSGHGRSKYGAWRVYAA 582
            VMVITKS+KVA+KLVKAFT+HKV+KTYIALCIGPAPKW++ITI SGHGRSK+GAWRVYAA
Sbjct: 121  VMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFGAWRVYAA 180

Query: 581  SDVGRALPGGSVVRDMETKFEVLSVNGKGSFKKVSDPRKDDKNNSIIVEEKSVTNSDVKK 402
            SDVGR LPGGSVVRDM T FEVLSVNG+GSFK+ S+ ++D++NN I+VE+K+V ++D KK
Sbjct: 181  SDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQEDEENN-IVVEKKAVLDADAKK 239

Query: 401  DEVLVRAFPRSGRTHQIRLHCQYLGIPIRGDVKYEGVYEWEGKTFDGHELHAESLSLNHP 222
            +E+LVR FPRSGRTHQIRLHCQYLGI IRGDVKYEGVYEW GK +DGHELHAESLSL HP
Sbjct: 240  NEILVRVFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGHELHAESLSLEHP 299

Query: 221  VTDLPVVFWAPLPLWASQVLQRIS 150
            +T  PV+  APLPLWA+Q  Q  S
Sbjct: 300  ITGCPVMVQAPLPLWATQAPQSSS 323


>ref|XP_006433526.1| hypothetical protein CICLE_v10001637mg [Citrus clementina]
            gi|567881937|ref|XP_006433527.1| hypothetical protein
            CICLE_v10001637mg [Citrus clementina]
            gi|557535648|gb|ESR46766.1| hypothetical protein
            CICLE_v10001637mg [Citrus clementina]
            gi|557535649|gb|ESR46767.1| hypothetical protein
            CICLE_v10001637mg [Citrus clementina]
          Length = 357

 Score =  436 bits (1121), Expect = e-119
 Identities = 232/366 (63%), Positives = 275/366 (75%), Gaps = 6/366 (1%)
 Frame = -2

Query: 1229 LTSKPSLFSVKPI-----SATVRYVCYSFPLPTMSDSDQTHLSDSSSTKDLNTLTNYXXX 1065
            +T  PSL S  P          R+    F L +M +  +    ++   +      NY   
Sbjct: 1    MTQMPSLSSFHPTFTFAPKGVPRFRKTFFSLASMLNPTEPTCENAPQIQQ-----NYPTP 55

Query: 1064 XXXXXXXXSKQIELSRAMSASSRSGLYTLSRSDVLFEDEWLIVVNKPQGVYCERVLASVP 885
                    SK IEL+RAMSASS+S LY LSRSDVL+EDEW + VNKPQGVYCE VLASVP
Sbjct: 56   LSPPLPAISKDIELTRAMSASSKSSLYKLSRSDVLYEDEWFVAVNKPQGVYCESVLASVP 115

Query: 884  SIL-NDSADSDRRNEADGHSRATQSSLPELHLANRLDRDTSGVMVITKSNKVAAKLVKAF 708
              L  DSA+S     ++G    T+ +L ELHLANRLDRDTSGVMVITKS+KVA+KLVKAF
Sbjct: 116  CFLAGDSAESKSGRLSEG----TKLNLLELHLANRLDRDTSGVMVITKSHKVASKLVKAF 171

Query: 707  TNHKVNKTYIALCIGPAPKWEKITISSGHGRSKYGAWRVYAASDVGRALPGGSVVRDMET 528
            T+HKV+KTYIALCIGPAPKW++ITI SGHGRSK+GAWRVYAASDVGR LPGGSVVRDM T
Sbjct: 172  TDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFGAWRVYAASDVGRVLPGGSVVRDMVT 231

Query: 527  KFEVLSVNGKGSFKKVSDPRKDDKNNSIIVEEKSVTNSDVKKDEVLVRAFPRSGRTHQIR 348
             FEVLSVNG+GSFK+ S+ ++ ++NN I+VE+K+V ++D KK+E+LVRAFPRSGRTHQIR
Sbjct: 232  SFEVLSVNGEGSFKEPSELQEHEENN-IVVEKKAVLDADAKKNEILVRAFPRSGRTHQIR 290

Query: 347  LHCQYLGIPIRGDVKYEGVYEWEGKTFDGHELHAESLSLNHPVTDLPVVFWAPLPLWASQ 168
            LHCQYLGI IRGDVKYEGVYEW GK +DGHELHAESLS +HPVT  PV+  APLPLW ++
Sbjct: 291  LHCQYLGISIRGDVKYEGVYEWNGKRYDGHELHAESLSFDHPVTGCPVMVQAPLPLWGTE 350

Query: 167  VLQRIS 150
             LQ  S
Sbjct: 351  ALQSSS 356


>ref|XP_007205588.1| hypothetical protein PRUPE_ppa008866mg [Prunus persica]
            gi|462401230|gb|EMJ06787.1| hypothetical protein
            PRUPE_ppa008866mg [Prunus persica]
          Length = 316

 Score =  436 bits (1121), Expect = e-119
 Identities = 219/317 (69%), Positives = 257/317 (81%)
 Frame = -2

Query: 1109 SSTKDLNTLTNYXXXXXXXXXXXSKQIELSRAMSASSRSGLYTLSRSDVLFEDEWLIVVN 930
            SS   L T  NY           SK IEL+RAMSASS+S L++LSR DV+FED+WLIVVN
Sbjct: 11   SSQNALQTSQNYPVPLSPPLPPISKHIELARAMSASSKSSLFSLSRDDVVFEDQWLIVVN 70

Query: 929  KPQGVYCERVLASVPSILNDSADSDRRNEADGHSRATQSSLPELHLANRLDRDTSGVMVI 750
            KPQGVYCE VL SVP +L DSA+S            T ++  ELHLANRLDRDTSG+MVI
Sbjct: 71   KPQGVYCESVLESVPQLLCDSAES-----------GTPANQLELHLANRLDRDTSGLMVI 119

Query: 749  TKSNKVAAKLVKAFTNHKVNKTYIALCIGPAPKWEKITISSGHGRSKYGAWRVYAASDVG 570
            TKS+KVA+KLVKAFT+HK++KTYIA CIG APKWE+IT+ SGHGRSK+GAWRVYAASDVG
Sbjct: 120  TKSHKVASKLVKAFTDHKISKTYIARCIGSAPKWERITLKSGHGRSKFGAWRVYAASDVG 179

Query: 569  RALPGGSVVRDMETKFEVLSVNGKGSFKKVSDPRKDDKNNSIIVEEKSVTNSDVKKDEVL 390
            R LPGGS+VRDMET FEVLS+NG+GS K+ S+ +KD+  N+I+V+EK+V + D KKDE+L
Sbjct: 180  RTLPGGSMVRDMETSFEVLSINGQGSLKEPSEFKKDEA-NTIVVQEKAVIDKDTKKDEIL 238

Query: 389  VRAFPRSGRTHQIRLHCQYLGIPIRGDVKYEGVYEWEGKTFDGHELHAESLSLNHPVTDL 210
            VRA PRSGRTHQIRLHCQYLGI IRGDVKYEGVYEW+G+T+DGHELHAESLS  HP+T L
Sbjct: 239  VRARPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWKGRTYDGHELHAESLSFEHPITGL 298

Query: 209  PVVFWAPLPLWASQVLQ 159
            PV+F AP+P WASQ LQ
Sbjct: 299  PVMFQAPVPSWASQALQ 315


>ref|XP_002512503.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
            gi|223548464|gb|EEF49955.1| ribosomal pseudouridine
            synthase, putative [Ricinus communis]
          Length = 321

 Score =  431 bits (1108), Expect = e-118
 Identities = 220/318 (69%), Positives = 255/318 (80%), Gaps = 1/318 (0%)
 Frame = -2

Query: 1109 SSTKDLNTLTNYXXXXXXXXXXXSKQIELSRAMSASSRSGLYTLSRSDVLFEDEWLIVVN 930
            +S  D  TL NY           SKQIEL+RA+SASSRS L+TLSRSDVL+ED+WLI VN
Sbjct: 11   TSQNDPLTLQNYPTPLSPPLPSISKQIELARALSASSRSSLFTLSRSDVLYEDQWLIAVN 70

Query: 929  KPQGVYCERVLASVPSILNDSAD-SDRRNEADGHSRATQSSLPELHLANRLDRDTSGVMV 753
            KPQGVYCE VL SVP +L  SA+ +D    A+G+         E HLANRLDRDTSGVMV
Sbjct: 71   KPQGVYCETVLESVPRVLAASAELTDPSEGAEGNPH-------EFHLANRLDRDTSGVMV 123

Query: 752  ITKSNKVAAKLVKAFTNHKVNKTYIALCIGPAPKWEKITISSGHGRSKYGAWRVYAASDV 573
            ITKS+KVA+KLVKAFT+HK+ KTYIALCIG APKWEKITI SGHGRSK+G WRVYAASDV
Sbjct: 124  ITKSHKVASKLVKAFTDHKIKKTYIALCIGLAPKWEKITIKSGHGRSKFGVWRVYAASDV 183

Query: 572  GRALPGGSVVRDMETKFEVLSVNGKGSFKKVSDPRKDDKNNSIIVEEKSVTNSDVKKDEV 393
            G+ LPGGS V+DMET FE+LSVNG+GSFK++S+  KD+  N ++VEEK+  N+DVKK E+
Sbjct: 184  GQTLPGGSTVKDMETSFELLSVNGQGSFKELSEFEKDE--NILVVEEKAAKNADVKKVEI 241

Query: 392  LVRAFPRSGRTHQIRLHCQYLGIPIRGDVKYEGVYEWEGKTFDGHELHAESLSLNHPVTD 213
            LVRAFP+SGRTHQIRLHCQYLGI IRGDVKYEGVYEWEG+T+DGHELHAE+LS  HPVT 
Sbjct: 242  LVRAFPQSGRTHQIRLHCQYLGISIRGDVKYEGVYEWEGRTYDGHELHAETLSFEHPVTG 301

Query: 212  LPVVFWAPLPLWASQVLQ 159
            +PV+  APLP WA Q  Q
Sbjct: 302  VPVMLRAPLPSWAIQASQ 319


>ref|XP_007031141.1| Pseudouridine synthase family protein isoform 2 [Theobroma cacao]
            gi|508719746|gb|EOY11643.1| Pseudouridine synthase family
            protein isoform 2 [Theobroma cacao]
          Length = 313

 Score =  426 bits (1094), Expect = e-116
 Identities = 213/314 (67%), Positives = 253/314 (80%)
 Frame = -2

Query: 1091 NTLTNYXXXXXXXXXXXSKQIELSRAMSASSRSGLYTLSRSDVLFEDEWLIVVNKPQGVY 912
            N+  NY           SK IEL+RAM+ASS+S L+ LSRSD+L+EDEWLI VNKPQG+Y
Sbjct: 6    NSHQNYPTPLSPPLPSISKDIELARAMTASSKSSLFELSRSDILYEDEWLIAVNKPQGIY 65

Query: 911  CERVLASVPSILNDSADSDRRNEADGHSRATQSSLPELHLANRLDRDTSGVMVITKSNKV 732
            C+ VLAS+P  L+DS  SDR ++ +      Q+S  ELHLANRLDRDTSG+MVITKS+KV
Sbjct: 66   CDSVLASIPRFLSDSTVSDRLSDGN------QASPFELHLANRLDRDTSGIMVITKSHKV 119

Query: 731  AAKLVKAFTNHKVNKTYIALCIGPAPKWEKITISSGHGRSKYGAWRVYAASDVGRALPGG 552
            AA LVKAFTNH V+KTY+A CIG APK E+ITI SGHGRSK+GAWRVYAA DVGR LPGG
Sbjct: 120  AAALVKAFTNHMVHKTYVAFCIGSAPKSERITIKSGHGRSKFGAWRVYAAGDVGRKLPGG 179

Query: 551  SVVRDMETKFEVLSVNGKGSFKKVSDPRKDDKNNSIIVEEKSVTNSDVKKDEVLVRAFPR 372
            S+VRDM T FEVLS+NG+ S+K+ S+  KD++  S+IVEEK+V + D +KDE+LVRAFPR
Sbjct: 180  SIVRDMGTTFEVLSINGQQSYKEPSESVKDEE-TSVIVEEKAVIDVDAQKDEILVRAFPR 238

Query: 371  SGRTHQIRLHCQYLGIPIRGDVKYEGVYEWEGKTFDGHELHAESLSLNHPVTDLPVVFWA 192
            SGRTHQIRLHCQYLGIPIRGDVKYEGVYEW+G+ +D HELHAESLS  HPVT  PV+  A
Sbjct: 239  SGRTHQIRLHCQYLGIPIRGDVKYEGVYEWKGRRYDAHELHAESLSFQHPVTGFPVMIQA 298

Query: 191  PLPLWASQVLQRIS 150
            PLPLWASQ LQ ++
Sbjct: 299  PLPLWASQALQPLT 312


>ref|XP_007031140.1| Pseudouridine synthase family protein isoform 1 [Theobroma cacao]
            gi|508719745|gb|EOY11642.1| Pseudouridine synthase family
            protein isoform 1 [Theobroma cacao]
          Length = 345

 Score =  426 bits (1094), Expect = e-116
 Identities = 213/314 (67%), Positives = 253/314 (80%)
 Frame = -2

Query: 1091 NTLTNYXXXXXXXXXXXSKQIELSRAMSASSRSGLYTLSRSDVLFEDEWLIVVNKPQGVY 912
            N+  NY           SK IEL+RAM+ASS+S L+ LSRSD+L+EDEWLI VNKPQG+Y
Sbjct: 38   NSHQNYPTPLSPPLPSISKDIELARAMTASSKSSLFELSRSDILYEDEWLIAVNKPQGIY 97

Query: 911  CERVLASVPSILNDSADSDRRNEADGHSRATQSSLPELHLANRLDRDTSGVMVITKSNKV 732
            C+ VLAS+P  L+DS  SDR ++ +      Q+S  ELHLANRLDRDTSG+MVITKS+KV
Sbjct: 98   CDSVLASIPRFLSDSTVSDRLSDGN------QASPFELHLANRLDRDTSGIMVITKSHKV 151

Query: 731  AAKLVKAFTNHKVNKTYIALCIGPAPKWEKITISSGHGRSKYGAWRVYAASDVGRALPGG 552
            AA LVKAFTNH V+KTY+A CIG APK E+ITI SGHGRSK+GAWRVYAA DVGR LPGG
Sbjct: 152  AAALVKAFTNHMVHKTYVAFCIGSAPKSERITIKSGHGRSKFGAWRVYAAGDVGRKLPGG 211

Query: 551  SVVRDMETKFEVLSVNGKGSFKKVSDPRKDDKNNSIIVEEKSVTNSDVKKDEVLVRAFPR 372
            S+VRDM T FEVLS+NG+ S+K+ S+  KD++  S+IVEEK+V + D +KDE+LVRAFPR
Sbjct: 212  SIVRDMGTTFEVLSINGQQSYKEPSESVKDEE-TSVIVEEKAVIDVDAQKDEILVRAFPR 270

Query: 371  SGRTHQIRLHCQYLGIPIRGDVKYEGVYEWEGKTFDGHELHAESLSLNHPVTDLPVVFWA 192
            SGRTHQIRLHCQYLGIPIRGDVKYEGVYEW+G+ +D HELHAESLS  HPVT  PV+  A
Sbjct: 271  SGRTHQIRLHCQYLGIPIRGDVKYEGVYEWKGRRYDAHELHAESLSFQHPVTGFPVMIQA 330

Query: 191  PLPLWASQVLQRIS 150
            PLPLWASQ LQ ++
Sbjct: 331  PLPLWASQALQPLT 344


>ref|XP_004304865.1| PREDICTED: RNA pseudourine synthase 1-like [Fragaria vesca subsp.
            vesca]
          Length = 347

 Score =  422 bits (1084), Expect = e-115
 Identities = 214/355 (60%), Positives = 261/355 (73%), Gaps = 3/355 (0%)
 Frame = -2

Query: 1214 SLFSVKPISATVRY---VCYSFPLPTMSDSDQTHLSDSSSTKDLNTLTNYXXXXXXXXXX 1044
            SL  ++P++  V +      SFP P       T     SS   L    NY          
Sbjct: 3    SLLVLQPVNVFVFFNPKTLTSFPKPFNFLRSVTMSDQPSSQNALQISQNYPVPLSPPLPL 62

Query: 1043 XSKQIELSRAMSASSRSGLYTLSRSDVLFEDEWLIVVNKPQGVYCERVLASVPSILNDSA 864
             SK +EL+RAMSASS+S L+TLSR+DV++ED+WLIVVNKPQG+YCE VL SVP +L +S 
Sbjct: 63   ISKNMELARAMSASSKSSLFTLSRNDVVYEDQWLIVVNKPQGIYCETVLESVPKLLAESG 122

Query: 863  DSDRRNEADGHSRATQSSLPELHLANRLDRDTSGVMVITKSNKVAAKLVKAFTNHKVNKT 684
                           +   PE+HLANRLDRDTSGVM+ITKS+KVAAKLVKAFT+HKV+KT
Sbjct: 123  --------------LEGKAPEIHLANRLDRDTSGVMIITKSHKVAAKLVKAFTDHKVSKT 168

Query: 683  YIALCIGPAPKWEKITISSGHGRSKYGAWRVYAASDVGRALPGGSVVRDMETKFEVLSVN 504
            YIA CIG APKWE+IT+ SGHGRSK+GAWRVYAASDVGR LPGGSVVRDMET FE+LS+N
Sbjct: 169  YIACCIGSAPKWERITVKSGHGRSKFGAWRVYAASDVGRPLPGGSVVRDMETSFEILSIN 228

Query: 503  GKGSFKKVSDPRKDDKNNSIIVEEKSVTNSDVKKDEVLVRAFPRSGRTHQIRLHCQYLGI 324
            G+G F++ S+ R DD    ++ E+  + + D KKDE+LV A PRSGRTHQIRLHCQYLGI
Sbjct: 229  GQGCFREPSEFRIDDDKILVVEEKAVIIDGDAKKDEILVIARPRSGRTHQIRLHCQYLGI 288

Query: 323  PIRGDVKYEGVYEWEGKTFDGHELHAESLSLNHPVTDLPVVFWAPLPLWASQVLQ 159
             IRGDVKYEGVYEW+G T+ GHELHAES+SL+HP+T LP++F APLP WA+Q++Q
Sbjct: 289  SIRGDVKYEGVYEWKGTTYGGHELHAESMSLDHPITGLPILFRAPLPSWANQLIQ 343


>gb|EXC51319.1| RNA pseudourine synthase 1 [Morus notabilis]
          Length = 319

 Score =  412 bits (1058), Expect = e-112
 Identities = 208/318 (65%), Positives = 250/318 (78%)
 Frame = -2

Query: 1109 SSTKDLNTLTNYXXXXXXXXXXXSKQIELSRAMSASSRSGLYTLSRSDVLFEDEWLIVVN 930
            +S   L T  NY           SK +ELSRAMSASS+S L+++SR+D +FEDE L+ VN
Sbjct: 11   TSQNALRTPQNYPVPLSPPPPPVSKDVELSRAMSASSKSSLFSISRNDFVFEDECLVAVN 70

Query: 929  KPQGVYCERVLASVPSILNDSADSDRRNEADGHSRATQSSLPELHLANRLDRDTSGVMVI 750
            KPQG+YCE V  SV  +L+DS++  +          T++S PELHLANRLDRDTSG+M+I
Sbjct: 71   KPQGIYCESVFDSVRKVLSDSSEPGQLE--------TEASPPELHLANRLDRDTSGLMLI 122

Query: 749  TKSNKVAAKLVKAFTNHKVNKTYIALCIGPAPKWEKITISSGHGRSKYGAWRVYAASDVG 570
            TKS+KVA+KLVKAFT HKV+KTYIA C+G APKWE ITI SGHGRSK+GAWRVYAASDVG
Sbjct: 123  TKSHKVASKLVKAFTTHKVSKTYIAFCVGSAPKWENITIKSGHGRSKFGAWRVYAASDVG 182

Query: 569  RALPGGSVVRDMETKFEVLSVNGKGSFKKVSDPRKDDKNNSIIVEEKSVTNSDVKKDEVL 390
            R LPGGSVVRDMET FEVLSVNG+   K+ S+ RKD  NN +IVEEK++ + D KKDE+L
Sbjct: 183  RTLPGGSVVRDMETSFEVLSVNGQRVSKEPSEFRKDG-NNVLIVEEKALIDRDGKKDEIL 241

Query: 389  VRAFPRSGRTHQIRLHCQYLGIPIRGDVKYEGVYEWEGKTFDGHELHAESLSLNHPVTDL 210
            VRA P+SGR+HQIRLHCQYLGI +RGDVKYEGV +W+GKT++GHELHAESLS  HP+T L
Sbjct: 242  VRARPKSGRSHQIRLHCQYLGISLRGDVKYEGVSQWKGKTYNGHELHAESLSFEHPITSL 301

Query: 209  PVVFWAPLPLWASQVLQR 156
            PVV   PLP+WASQV Q+
Sbjct: 302  PVVLSTPLPMWASQVTQQ 319


>ref|XP_002278016.2| PREDICTED: RNA pseudourine synthase 1-like [Vitis vinifera]
          Length = 348

 Score =  409 bits (1052), Expect = e-111
 Identities = 221/368 (60%), Positives = 264/368 (71%)
 Frame = -2

Query: 1250 PFQSTLSLTSKPSLFSVKPISATVRYVCYSFPLPTMSDSDQTHLSDSSSTKDLNTLTNYX 1071
            P   +L L S  S  ++  I+A VR +  S P  TM++       D +S      LTNY 
Sbjct: 2    PLSPSLCLRSSLSP-NLPTITAAVRSLGASLPHTTMAE-----YIDPNSKDAPQILTNYP 55

Query: 1070 XXXXXXXXXXSKQIELSRAMSASSRSGLYTLSRSDVLFEDEWLIVVNKPQGVYCERVLAS 891
                      SK IE SRAMSASSRS L++L RSD+LFED+WL+ VNKPQGVYCE +L S
Sbjct: 56   KPISPPLPAISKHIEQSRAMSASSRSSLFSLCRSDILFEDQWLMAVNKPQGVYCETILLS 115

Query: 890  VPSILNDSADSDRRNEADGHSRATQSSLPELHLANRLDRDTSGVMVITKSNKVAAKLVKA 711
            V  +L+DS         DGH      S   LHLANRLDRDTSGVMVITKS++VAAKL+KA
Sbjct: 116  VSRMLDDS---------DGHD-----SCRSLHLANRLDRDTSGVMVITKSHQVAAKLMKA 161

Query: 710  FTNHKVNKTYIALCIGPAPKWEKITISSGHGRSKYGAWRVYAASDVGRALPGGSVVRDME 531
            F++ KV KTY+ALCIG AP WEKITI SGHGRSK+GAWRVYAASDVGRALP    ++DM 
Sbjct: 162  FSDRKVTKTYLALCIGAAPTWEKITIKSGHGRSKFGAWRVYAASDVGRALPNAPAIKDMV 221

Query: 530  TKFEVLSVNGKGSFKKVSDPRKDDKNNSIIVEEKSVTNSDVKKDEVLVRAFPRSGRTHQI 351
            T FEVLSVNG+G+ K++ + RK D+   ++VEE+SV +S+ ++DE+LVRAFPRSGRTHQI
Sbjct: 222  TSFEVLSVNGQGNVKELPESRKADE-TVLVVEERSVIDSNARQDEILVRAFPRSGRTHQI 280

Query: 350  RLHCQYLGIPIRGDVKYEGVYEWEGKTFDGHELHAESLSLNHPVTDLPVVFWAPLPLWAS 171
            RLHCQYLGI IRGDVKYEGV+EW+GK +DGHELHAESLS  HPVT + V F APLP WA 
Sbjct: 281  RLHCQYLGISIRGDVKYEGVHEWKGKIYDGHELHAESLSFEHPVTGVDVAFRAPLPSWAV 340

Query: 170  QVLQRISH 147
            Q LQ   H
Sbjct: 341  QALQPSPH 348


>gb|EXB98832.1| RNA pseudourine synthase 1 [Morus notabilis]
          Length = 319

 Score =  408 bits (1048), Expect = e-111
 Identities = 207/318 (65%), Positives = 249/318 (78%)
 Frame = -2

Query: 1109 SSTKDLNTLTNYXXXXXXXXXXXSKQIELSRAMSASSRSGLYTLSRSDVLFEDEWLIVVN 930
            +S   L T  NY           SK +ELSRAMSASS+S L+++SR+D +FEDE L+ VN
Sbjct: 11   TSQNALRTPQNYPVPLSPPPPPVSKDVELSRAMSASSKSSLFSISRNDFVFEDECLVAVN 70

Query: 929  KPQGVYCERVLASVPSILNDSADSDRRNEADGHSRATQSSLPELHLANRLDRDTSGVMVI 750
            KPQG+YCE V  SV  +L+DS++  +          T++S PELHLANRLDRDTSG+M+I
Sbjct: 71   KPQGIYCESVFDSVRKVLSDSSEPGQLE--------TEASPPELHLANRLDRDTSGLMLI 122

Query: 749  TKSNKVAAKLVKAFTNHKVNKTYIALCIGPAPKWEKITISSGHGRSKYGAWRVYAASDVG 570
            TKS+KVA+KLVKAFT HKV+KTYIA C+G APKWE ITI SGHGRSK+GAWRVYAASDVG
Sbjct: 123  TKSHKVASKLVKAFTTHKVSKTYIAFCVGSAPKWENITIKSGHGRSKFGAWRVYAASDVG 182

Query: 569  RALPGGSVVRDMETKFEVLSVNGKGSFKKVSDPRKDDKNNSIIVEEKSVTNSDVKKDEVL 390
            R LPGGSVVRDMET FEVLSVNG+   K+ S+ RKD  NN +IVEEK++ + D KKDE+L
Sbjct: 183  RTLPGGSVVRDMETSFEVLSVNGQRVSKEPSEFRKDG-NNVLIVEEKALIDRDGKKDEIL 241

Query: 389  VRAFPRSGRTHQIRLHCQYLGIPIRGDVKYEGVYEWEGKTFDGHELHAESLSLNHPVTDL 210
            VRA P+SGR+HQIRLHCQYLGI +RGDVKYEGV +W+GKT++GHELHAESLS  HP+T L
Sbjct: 242  VRARPKSGRSHQIRLHCQYLGISLRGDVKYEGVSQWKGKTYNGHELHAESLSFEHPITSL 301

Query: 209  PVVFWAPLPLWASQVLQR 156
             VV   PLP+WASQV Q+
Sbjct: 302  LVVLSTPLPMWASQVTQQ 319


>ref|XP_006344754.1| PREDICTED: RNA pseudouridine synthase 1-like [Solanum tuberosum]
          Length = 332

 Score =  404 bits (1039), Expect = e-110
 Identities = 201/305 (65%), Positives = 238/305 (78%)
 Frame = -2

Query: 1082 TNYXXXXXXXXXXXSKQIELSRAMSASSRSGLYTLSRSDVLFEDEWLIVVNKPQGVYCER 903
            T+Y           SK IE +RA++ASS+S L++LSRS V+FEDEW+I VNKPQG+YCE 
Sbjct: 45   TDYPVPLSPPLPALSKDIEPNRALTASSKSALFSLSRSHVIFEDEWIIAVNKPQGIYCES 104

Query: 902  VLASVPSILNDSADSDRRNEADGHSRATQSSLPELHLANRLDRDTSGVMVITKSNKVAAK 723
            VL+S+P +LND                T +++ ELHLANRLDRDTSGVM+ITK +KVAAK
Sbjct: 105  VLSSLPDLLND----------------TGANVSELHLANRLDRDTSGVMLITKLHKVAAK 148

Query: 722  LVKAFTNHKVNKTYIALCIGPAPKWEKITISSGHGRSKYGAWRVYAASDVGRALPGGSVV 543
             VKAFT+HKV KTY+A C+G APKWEKIT+ SGHGRSKYGAWRVYAASD GR LPGGS+V
Sbjct: 149  FVKAFTDHKVRKTYLAYCVGLAPKWEKITVKSGHGRSKYGAWRVYAASDAGRKLPGGSLV 208

Query: 542  RDMETKFEVLSVNGKGSFKKVSDPRKDDKNNSIIVEEKSVTNSDVKKDEVLVRAFPRSGR 363
            +DMET FEVLSVNG G FK+VSD  KD+  + +IV+EKSV   D+KKDE+LVRA PRSGR
Sbjct: 209  KDMETSFEVLSVNGLGCFKEVSDFHKDE--DVVIVQEKSVIGCDLKKDEILVRASPRSGR 266

Query: 362  THQIRLHCQYLGIPIRGDVKYEGVYEWEGKTFDGHELHAESLSLNHPVTDLPVVFWAPLP 183
            THQIRLHCQYLGIPIRGDV+YEGVYEW+G  +D HELHAESLS  HP+T  P++  APLP
Sbjct: 267  THQIRLHCQYLGIPIRGDVRYEGVYEWKGSRYDSHELHAESLSFEHPITGKPMLLQAPLP 326

Query: 182  LWASQ 168
             WA Q
Sbjct: 327  SWAIQ 331


>ref|XP_004230301.1| PREDICTED: RNA pseudourine synthase 1-like [Solanum lycopersicum]
          Length = 308

 Score =  403 bits (1035), Expect = e-109
 Identities = 201/308 (65%), Positives = 239/308 (77%)
 Frame = -2

Query: 1082 TNYXXXXXXXXXXXSKQIELSRAMSASSRSGLYTLSRSDVLFEDEWLIVVNKPQGVYCER 903
            T+Y           SK IE +RA++ASS+S L++LSRS V+FEDEW+I VNKPQG+YCE 
Sbjct: 15   TDYPVPLSPPLPTLSKDIEPNRALTASSKSALFSLSRSHVIFEDEWIIAVNKPQGIYCES 74

Query: 902  VLASVPSILNDSADSDRRNEADGHSRATQSSLPELHLANRLDRDTSGVMVITKSNKVAAK 723
            VL+S+P +LND                T +++ ELHLANRLDRDTSGVM+ITK +KVAAK
Sbjct: 75   VLSSLPDLLND----------------TGANVSELHLANRLDRDTSGVMLITKLHKVAAK 118

Query: 722  LVKAFTNHKVNKTYIALCIGPAPKWEKITISSGHGRSKYGAWRVYAASDVGRALPGGSVV 543
             VKAFT+HKV KTY+A C+G APKWEKIT+ SGHGRSKYGAWRVYAASD GR LPGGS+V
Sbjct: 119  FVKAFTDHKVRKTYLAYCVGLAPKWEKITVKSGHGRSKYGAWRVYAASDAGRKLPGGSLV 178

Query: 542  RDMETKFEVLSVNGKGSFKKVSDPRKDDKNNSIIVEEKSVTNSDVKKDEVLVRAFPRSGR 363
            +DMET FEVLSVNG G FK+VSD  KD+  + +IV+EKSV   D+KKDE+LVRA PRSGR
Sbjct: 179  KDMETSFEVLSVNGLGCFKEVSDLHKDE--DIVIVQEKSVIGCDLKKDEILVRASPRSGR 236

Query: 362  THQIRLHCQYLGIPIRGDVKYEGVYEWEGKTFDGHELHAESLSLNHPVTDLPVVFWAPLP 183
            THQIRLHCQYLGIPIRGDV+YEGVYEW+G  +D HELHAESLS  HP+T   ++  APLP
Sbjct: 237  THQIRLHCQYLGIPIRGDVRYEGVYEWKGNIYDSHELHAESLSFEHPITGKSMLLQAPLP 296

Query: 182  LWASQVLQ 159
             WA Q L+
Sbjct: 297  SWAIQPLR 304


>ref|XP_004144814.1| PREDICTED: RNA pseudourine synthase 1-like [Cucumis sativus]
          Length = 366

 Score =  400 bits (1029), Expect = e-109
 Identities = 206/357 (57%), Positives = 257/357 (71%)
 Frame = -2

Query: 1217 PSLFSVKPISATVRYVCYSFPLPTMSDSDQTHLSDSSSTKDLNTLTNYXXXXXXXXXXXS 1038
            P  F+  P + +  +  +     +M+DS +    +  ST +     NY           S
Sbjct: 15   PKTFTEFPFTKSFCFHRFKSVSNSMTDSSEPVTGNCPSTAE-----NYPVPLSPPLPAIS 69

Query: 1037 KQIELSRAMSASSRSGLYTLSRSDVLFEDEWLIVVNKPQGVYCERVLASVPSILNDSADS 858
            K +EL+RAM ASS+S LY LS +DV++EDEWLI VNKPQG+YCE VLA+VP +L DSA++
Sbjct: 70   KNLELARAMVASSKSSLYALSANDVIYEDEWLIAVNKPQGIYCENVLAAVPRLLGDSANA 129

Query: 857  DRRNEADGHSRATQSSLPELHLANRLDRDTSGVMVITKSNKVAAKLVKAFTNHKVNKTYI 678
                         ++SLPELHLANRLDRDTSGVMVITKS+KVA+KLVKAFT+H V+K+YI
Sbjct: 130  -----------GIKTSLPELHLANRLDRDTSGVMVITKSHKVASKLVKAFTDHTVSKSYI 178

Query: 677  ALCIGPAPKWEKITISSGHGRSKYGAWRVYAASDVGRALPGGSVVRDMETKFEVLSVNGK 498
            A C+G +PKW+KI + SGHGRSK+G WRVYAA+DVGR+LPGGSVVRDMET FEVLSVNGK
Sbjct: 179  AFCVGTSPKWKKINVKSGHGRSKFGVWRVYAAADVGRSLPGGSVVRDMETYFEVLSVNGK 238

Query: 497  GSFKKVSDPRKDDKNNSIIVEEKSVTNSDVKKDEVLVRAFPRSGRTHQIRLHCQYLGIPI 318
             + +++   R+ ++  +I+V  KS+ + D  KDE+L+RA PRSGRTHQIRLHCQYLGIPI
Sbjct: 239  NTMEELQKFRRGEE-ETIVVHTKSLVDIDSHKDEILIRARPRSGRTHQIRLHCQYLGIPI 297

Query: 317  RGDVKYEGVYEWEGKTFDGHELHAESLSLNHPVTDLPVVFWAPLPLWASQVLQRISH 147
            RGDVKYEGV EW  K +D HELHAESL   HPVT +P+   APLP WASQ LQ   H
Sbjct: 298  RGDVKYEGVTEWNEKIYDSHELHAESLYFVHPVTGIPLKLQAPLPSWASQALQPQQH 354


>ref|XP_004158751.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 1-like
            [Cucumis sativus]
          Length = 366

 Score =  400 bits (1027), Expect = e-109
 Identities = 206/357 (57%), Positives = 256/357 (71%)
 Frame = -2

Query: 1217 PSLFSVKPISATVRYVCYSFPLPTMSDSDQTHLSDSSSTKDLNTLTNYXXXXXXXXXXXS 1038
            P  F+  P + +  +  +     +M+DS +    +  ST +     NY           S
Sbjct: 15   PKTFTEFPFTKSFCFHRFKSVSNSMTDSSEPVTGNCPSTAE-----NYPVPLSPPLPAIS 69

Query: 1037 KQIELSRAMSASSRSGLYTLSRSDVLFEDEWLIVVNKPQGVYCERVLASVPSILNDSADS 858
            K +EL+RAM ASS+S LY LS +DV++EDEWLI VNKPQG+YCE VLA+VP +L DSA++
Sbjct: 70   KNLELARAMVASSKSSLYALSANDVIYEDEWLIAVNKPQGIYCENVLAAVPRLLGDSANA 129

Query: 857  DRRNEADGHSRATQSSLPELHLANRLDRDTSGVMVITKSNKVAAKLVKAFTNHKVNKTYI 678
                         ++SLPELHLANRLDRDTSGVMVITKS+KVA+KLVKAFT+H V+K+YI
Sbjct: 130  -----------GIKTSLPELHLANRLDRDTSGVMVITKSHKVASKLVKAFTDHTVSKSYI 178

Query: 677  ALCIGPAPKWEKITISSGHGRSKYGAWRVYAASDVGRALPGGSVVRDMETKFEVLSVNGK 498
            A C+G +PKW KI + SGHGRSK+G WRVYAA+DVGR+LPGGSVVRDMET FEVLSVNGK
Sbjct: 179  AFCVGTSPKWXKINVKSGHGRSKFGVWRVYAAADVGRSLPGGSVVRDMETYFEVLSVNGK 238

Query: 497  GSFKKVSDPRKDDKNNSIIVEEKSVTNSDVKKDEVLVRAFPRSGRTHQIRLHCQYLGIPI 318
             + +++   R+ ++  +I+V  KS+ + D  KDE+L+RA PRSGRTHQIRLHCQYLGIPI
Sbjct: 239  NTMEELQKFRRGEE-ETIVVHTKSLVDIDSHKDEILIRARPRSGRTHQIRLHCQYLGIPI 297

Query: 317  RGDVKYEGVYEWEGKTFDGHELHAESLSLNHPVTDLPVVFWAPLPLWASQVLQRISH 147
            RGDVKYEGV EW  K +D HELHAESL   HPVT +P+   APLP WASQ LQ   H
Sbjct: 298  RGDVKYEGVTEWNEKIYDSHELHAESLYFVHPVTGIPLKLQAPLPSWASQALQPQQH 354


>emb|CBI39587.3| unnamed protein product [Vitis vinifera]
          Length = 274

 Score =  389 bits (999), Expect = e-105
 Identities = 195/289 (67%), Positives = 230/289 (79%)
 Frame = -2

Query: 1013 MSASSRSGLYTLSRSDVLFEDEWLIVVNKPQGVYCERVLASVPSILNDSADSDRRNEADG 834
            MSASSRS L++L RSD+LFED+WL+ VNKPQGVYCE +L SV  +L+DS         DG
Sbjct: 1    MSASSRSSLFSLCRSDILFEDQWLMAVNKPQGVYCETILLSVSRMLDDS---------DG 51

Query: 833  HSRATQSSLPELHLANRLDRDTSGVMVITKSNKVAAKLVKAFTNHKVNKTYIALCIGPAP 654
            H      S   LHLANRLDRDTSGVMVITKS++VAAKL+KAF++ KV KTY+ALCIG AP
Sbjct: 52   HD-----SCRSLHLANRLDRDTSGVMVITKSHQVAAKLMKAFSDRKVTKTYLALCIGAAP 106

Query: 653  KWEKITISSGHGRSKYGAWRVYAASDVGRALPGGSVVRDMETKFEVLSVNGKGSFKKVSD 474
             WEKITI SGHGRSK+GAWRVYAASDVGRALP    ++DM T FEVLSVNG+G+ K++ +
Sbjct: 107  TWEKITIKSGHGRSKFGAWRVYAASDVGRALPNAPAIKDMVTSFEVLSVNGQGNVKELPE 166

Query: 473  PRKDDKNNSIIVEEKSVTNSDVKKDEVLVRAFPRSGRTHQIRLHCQYLGIPIRGDVKYEG 294
             RK D+   ++VEE+SV +S+ ++DE+LVRAFPRSGRTHQIRLHCQYLGI IRGDVKYEG
Sbjct: 167  SRKADE-TVLVVEERSVIDSNARQDEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEG 225

Query: 293  VYEWEGKTFDGHELHAESLSLNHPVTDLPVVFWAPLPLWASQVLQRISH 147
            V+EW+GK +DGHELHAESLS  HPVT + V F APLP WA Q LQ   H
Sbjct: 226  VHEWKGKIYDGHELHAESLSFEHPVTGVDVAFRAPLPSWAVQALQPSPH 274


>gb|EYU37245.1| hypothetical protein MIMGU_mgv1a010081mg [Mimulus guttatus]
          Length = 323

 Score =  369 bits (948), Expect = 1e-99
 Identities = 189/311 (60%), Positives = 226/311 (72%), Gaps = 2/311 (0%)
 Frame = -2

Query: 1088 TLTNYXXXXXXXXXXXSKQIELSRAMSASSRSGLYTLSRSDVLFEDEWLIVVNKPQGVYC 909
            +L NY           SK +EL+RA++ASS+S L++LSR DVLFEDEWLI VNKP G+YC
Sbjct: 20   SLQNYPVPLSPPPPLISKNVELNRALTASSKSSLFSLSRKDVLFEDEWLIAVNKPNGIYC 79

Query: 908  ERVLASVPSILNDSADSDRRNEADGHSRATQSSLPELHLANRLDRDTSGVMVITKSNKVA 729
            E +L+SV  +LN                  Q  L ELHL+NRLDRDTSGV++ITKS+KVA
Sbjct: 80   ETILSSVQILLNTD----------------QVKLQELHLSNRLDRDTSGVILITKSHKVA 123

Query: 728  AKLVKAFTNHKVNKTYIALCIGPAPKWEKITISSGHGRSKYGAWRVYAASDVGRALPGGS 549
            AKLVKAFTNH V KTY+A C+G  PKW+ + I SGHGRSK+GAWRVYA SDVGR LPGGS
Sbjct: 124  AKLVKAFTNHMVKKTYLASCVGTFPKWKNMIIKSGHGRSKHGAWRVYAYSDVGRVLPGGS 183

Query: 548  VVRDMETKFEVLSVNGKGSFKKVSDPRKDDKNNSIIVEEKSVTNS--DVKKDEVLVRAFP 375
             VRDMET F+VLSVNGK S  + SD   +++   +  E+  V  S    ++DEV+VRA P
Sbjct: 184  FVRDMETSFDVLSVNGK-SCSQESDANHEEEEKIVAEEKSEVVGSCCSDERDEVVVRAHP 242

Query: 374  RSGRTHQIRLHCQYLGIPIRGDVKYEGVYEWEGKTFDGHELHAESLSLNHPVTDLPVVFW 195
            RSGRTHQIRLHCQYLGIPI GDVKYEGVYEW+ +T++GHELHAE+LS  HP+T   V   
Sbjct: 243  RSGRTHQIRLHCQYLGIPIIGDVKYEGVYEWKDRTYEGHELHAETLSFEHPITGQSVFIQ 302

Query: 194  APLPLWASQVL 162
            APLPLWASQ L
Sbjct: 303  APLPLWASQAL 313


>ref|XP_006392435.1| hypothetical protein EUTSA_v10023586mg [Eutrema salsugineum]
            gi|557088941|gb|ESQ29721.1| hypothetical protein
            EUTSA_v10023586mg [Eutrema salsugineum]
          Length = 333

 Score =  369 bits (946), Expect = 2e-99
 Identities = 201/361 (55%), Positives = 240/361 (66%)
 Frame = -2

Query: 1253 FPFQSTLSLTSKPSLFSVKPISATVRYVCYSFPLPTMSDSDQTHLSDSSSTKDLNTLTNY 1074
            F F S   LT      S+K + A          LPT  D++Q                NY
Sbjct: 13   FSFSSNTKLTKPYFAVSIKAMEARN-------DLPTTVDTNQ----------------NY 49

Query: 1073 XXXXXXXXXXXSKQIELSRAMSASSRSGLYTLSRSDVLFEDEWLIVVNKPQGVYCERVLA 894
                       SK IEL RAM ASS+S L+ L+R+DVL+EDEWL+ VNKP+G+YCE VL+
Sbjct: 50   PKPISAPPPPISKDIELKRAMEASSKSSLFNLTRNDVLYEDEWLMAVNKPKGIYCESVLS 109

Query: 893  SVPSILNDSADSDRRNEADGHSRATQSSLPELHLANRLDRDTSGVMVITKSNKVAAKLVK 714
            S P ++ DS+                S+  E HLANRLDRDTSGVM+ITKS+KVAAKLVK
Sbjct: 110  SAPKVIVDSS----------------STANEFHLANRLDRDTSGVMLITKSHKVAAKLVK 153

Query: 713  AFTNHKVNKTYIALCIGPAPKWEKITISSGHGRSKYGAWRVYAASDVGRALPGGSVVRDM 534
            AFT HK+ K+YIALCIG +P W KIT+ SGHGRSK+GAWRVYAA DVGR LPGGS VRDM
Sbjct: 154  AFTEHKIRKSYIALCIGSSPNWSKITVRSGHGRSKHGAWRVYAALDVGRVLPGGSFVRDM 213

Query: 533  ETKFEVLSVNGKGSFKKVSDPRKDDKNNSIIVEEKSVTNSDVKKDEVLVRAFPRSGRTHQ 354
            ET FEV+SVNG     + ++P + +   S+IV E     S V  D V+VRAFPRSGRTHQ
Sbjct: 214  ETTFEVVSVNG-----EKTEPLEVE---SVIVVEGEPGLSCVGDDVVVVRAFPRSGRTHQ 265

Query: 353  IRLHCQYLGIPIRGDVKYEGVYEWEGKTFDGHELHAESLSLNHPVTDLPVVFWAPLPLWA 174
            IRLHC+YLGIPIRGDVKY G+YEW G+TF+GHELHAESLS +HPVT  P+V  APLP W 
Sbjct: 266  IRLHCRYLGIPIRGDVKYHGMYEWRGRTFEGHELHAESLSFDHPVTGEPIVIRAPLPCWV 325

Query: 173  S 171
            +
Sbjct: 326  A 326


>ref|XP_006302538.1| hypothetical protein CARUB_v10020638mg [Capsella rubella]
            gi|565489799|ref|XP_006302539.1| hypothetical protein
            CARUB_v10020638mg [Capsella rubella]
            gi|482571248|gb|EOA35436.1| hypothetical protein
            CARUB_v10020638mg [Capsella rubella]
            gi|482571249|gb|EOA35437.1| hypothetical protein
            CARUB_v10020638mg [Capsella rubella]
          Length = 329

 Score =  365 bits (936), Expect = 3e-98
 Identities = 195/320 (60%), Positives = 228/320 (71%), Gaps = 4/320 (1%)
 Frame = -2

Query: 1118 SDSSSTKDLNTLTNYXXXXXXXXXXXSKQIELSRAMSASSRSGLYTLSRSDVLFEDEWLI 939
            S  ++T +LN   NY           SK IEL RAM ASS+S LY L+R DVL+EDE L+
Sbjct: 29   SMEATTSELNL--NYPKPISSPPPPISKDIELKRAMEASSKSSLYNLTRDDVLYEDEHLM 86

Query: 938  VVNKPQGVYCERVLASVPSILNDSADSDRRNEADGHSRATQSSLPELHLANRLDRDTSGV 759
             VNKP+GVYCE VL S P I+ DS+                    E HLANRLDRDTSGV
Sbjct: 87   AVNKPKGVYCEAVLRSAPQIVLDSSS-------------------EFHLANRLDRDTSGV 127

Query: 758  MVITKSNKVAAKLVKAFTNHKVNKTYIALCIGPAPKWEKITISSGHGRSKYGAWRVYAAS 579
            M+ITKS+KVAAKLVKAFT HK+ K+YIALCIG +P W K+T+SSGHGRSK+GAWRVY+A 
Sbjct: 128  MIITKSHKVAAKLVKAFTEHKIRKSYIALCIGSSPNWSKVTVSSGHGRSKHGAWRVYSAL 187

Query: 578  DVGRALPGGSVVRDMETKFEVLSVNGKGSFKKVSDPRKDD--KNNSIIVEEKSVTNSDVK 405
            DVGR LPGGS VRDMET FEV+SVNG  S     D  K +  +  S++V E     S  +
Sbjct: 188  DVGRVLPGGSFVRDMETTFEVVSVNGVKSESCEVDGVKTESCEVESVVVVEGKREVSSCE 247

Query: 404  KDE--VLVRAFPRSGRTHQIRLHCQYLGIPIRGDVKYEGVYEWEGKTFDGHELHAESLSL 231
             D+  V+VRAFPRSGRTHQIRLHCQYLGIPIRGDVKY G YEW G+TF+GHELHAE LSL
Sbjct: 248  GDDVVVVVRAFPRSGRTHQIRLHCQYLGIPIRGDVKYHGRYEWCGRTFEGHELHAECLSL 307

Query: 230  NHPVTDLPVVFWAPLPLWAS 171
            +HPVTD P+VF AP+P WA+
Sbjct: 308  DHPVTDEPIVFRAPVPCWAA 327


>ref|XP_002894642.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
            lyrata] gi|297340484|gb|EFH70901.1| pseudouridine
            synthase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 321

 Score =  361 bits (926), Expect = 4e-97
 Identities = 192/335 (57%), Positives = 231/335 (68%), Gaps = 2/335 (0%)
 Frame = -2

Query: 1166 YSFPLPTMSDSDQTHLSDSSSTKDLNTLTN--YXXXXXXXXXXXSKQIELSRAMSASSRS 993
            +SF + T S   + + + S+   +  +  N  Y           SK IEL RAM ASS+S
Sbjct: 8    FSFSISTNSILTKPYFAISTKAMEATSELNLHYPKPISPPPPPISKDIELRRAMEASSKS 67

Query: 992  GLYTLSRSDVLFEDEWLIVVNKPQGVYCERVLASVPSILNDSADSDRRNEADGHSRATQS 813
             L+ L+R  VL+EDE+L+ VNKP+GVYCE VL S P I+ DS+                 
Sbjct: 68   SLFNLTRDHVLYEDEYLMAVNKPKGVYCEAVLRSAPQIVLDSSS---------------- 111

Query: 812  SLPELHLANRLDRDTSGVMVITKSNKVAAKLVKAFTNHKVNKTYIALCIGPAPKWEKITI 633
               E HLANRLDRDTSGVM+ITKS+KVAAKLVKAFT HK+ K+YIALCIG +P W KIT+
Sbjct: 112  ---EFHLANRLDRDTSGVMIITKSHKVAAKLVKAFTEHKIRKSYIALCIGSSPNWRKITV 168

Query: 632  SSGHGRSKYGAWRVYAASDVGRALPGGSVVRDMETKFEVLSVNGKGSFKKVSDPRKDDKN 453
            SSGHGRSK+GAWRVYAA DVGR LPGGS VRDMET FEV+SVNG  +        +  + 
Sbjct: 169  SSGHGRSKHGAWRVYAALDVGRVLPGGSFVRDMETTFEVVSVNGVET--------ESCEV 220

Query: 452  NSIIVEEKSVTNSDVKKDEVLVRAFPRSGRTHQIRLHCQYLGIPIRGDVKYEGVYEWEGK 273
             ++IV E+    S    D V+VRAFPRSGRTHQIRLHCQYLGI IRGDVKY G+YEW G+
Sbjct: 221  ENVIVVEREQELSCAGDDVVVVRAFPRSGRTHQIRLHCQYLGISIRGDVKYHGMYEWRGR 280

Query: 272  TFDGHELHAESLSLNHPVTDLPVVFWAPLPLWASQ 168
            TF+GHELHAE LSL+HPVTD P+V  APLP WA++
Sbjct: 281  TFEGHELHAECLSLDHPVTDDPIVIRAPLPCWATR 315


>dbj|BAK01967.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 346

 Score =  360 bits (925), Expect = 5e-97
 Identities = 188/295 (63%), Positives = 217/295 (73%), Gaps = 3/295 (1%)
 Frame = -2

Query: 1037 KQIELSRAMSASSRSGLYTLSRSDVLFEDEWLIVVNKPQGVYCERVLASVPSILNDSADS 858
            K +EL RAM+AS+RSG Y  S + V+FEDEWL VV+KP GVYCE +L+++P     S D 
Sbjct: 65   KDVELRRAMTASARSGAY--SSAAVVFEDEWLAVVDKPAGVYCEALLSALPCSTASSGDP 122

Query: 857  DRRNEADGHSRATQSSLPELHLANRLDRDTSGVMVITKSNKVAAKLVKAFTNHKVNKTYI 678
                          SS P LHLANRLDRDTSG+MVITK NKVAAKLVKAFT HKV KTY+
Sbjct: 123  --------------SSKPNLHLANRLDRDTSGLMVITKCNKVAAKLVKAFTEHKVKKTYL 168

Query: 677  ALCIGPAPKWEKITISSGHGRSKYGAWRVYAASDVGRALPGGSVVRDMETKFEVLSVNGK 498
            ALCIG  P WEK+ + SGHGRSK+GAWRVYA SDVGR LPGGS VRDM TKFEVL  +GK
Sbjct: 169  ALCIGYLPAWEKVKVCSGHGRSKHGAWRVYAMSDVGRTLPGGSSVRDMSTKFEVLGTDGK 228

Query: 497  GSFKKVSDPRKDDKNNSIIVEEKS---VTNSDVKKDEVLVRAFPRSGRTHQIRLHCQYLG 327
            G +++ S+   DD   SI V+EK+    +N DVK   V VRA+P+SGRTHQIRLHCQYLG
Sbjct: 229  GQYREPSNVDIDD-IESITVQEKAADQTSNVDVKSHMVFVRAYPQSGRTHQIRLHCQYLG 287

Query: 326  IPIRGDVKYEGVYEWEGKTFDGHELHAESLSLNHPVTDLPVVFWAPLPLWASQVL 162
            IPIRGDVKY GV EW G   DGH LHAESLS  HPVT LPV F APLP WA++++
Sbjct: 288  IPIRGDVKYGGVIEWNGVDCDGHALHAESLSFVHPVTGLPVTFQAPLPSWANEII 342