BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia25_contig00017742
         (1748 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s...   917   0.0  
emb|CBI16226.3| unnamed protein product [Vitis vinifera]              914   0.0  
ref|XP_006365152.1| PREDICTED: DNA-directed RNA polymerase III s...   876   0.0  
ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III s...   876   0.0  
ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III s...   872   0.0  
ref|XP_007036220.1| DNA-directed RNA polymerase [Theobroma cacao...   868   0.0  
ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III s...   864   0.0  
ref|XP_004505924.1| PREDICTED: DNA-directed RNA polymerase III s...   857   0.0  
ref|XP_004505923.1| PREDICTED: DNA-directed RNA polymerase III s...   857   0.0  
ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III s...   856   0.0  
ref|XP_007132141.1| hypothetical protein PHAVU_011G070100g [Phas...   853   0.0  
ref|XP_002300065.1| DNA-directed RNA polymerase family protein [...   852   0.0  
ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III s...   850   0.0  
ref|XP_007208145.1| hypothetical protein PRUPE_ppa024521mg, part...   849   0.0  
ref|XP_002864665.1| hypothetical protein ARALYDRAFT_496142 [Arab...   845   0.0  
ref|XP_006279465.1| hypothetical protein CARUB_v10025743mg [Caps...   845   0.0  
dbj|BAA96933.1| DNA-directed RNA polymerase II largest chain [Ar...   841   0.0  
ref|NP_200812.2| nuclear RNA polymerase C1 [Arabidopsis thaliana...   841   0.0  
ref|XP_002531828.1| DNA-directed RNA polymerase III largest subu...   840   0.0  
ref|XP_004294640.1| PREDICTED: DNA-directed RNA polymerase III s...   837   0.0  

>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
            vinifera]
          Length = 1383

 Score =  917 bits (2371), Expect = 0.0
 Identities = 454/586 (77%), Positives = 512/586 (87%), Gaps = 4/586 (0%)
 Frame = -1

Query: 1748 AVSHIKEQSRGSVNMVYMLTPAKVLSLFKKMLDEDCEVLYLADRPEKLIITSIAVPPTVI 1569
            A+SH KE S+ S ++V +L P KVLSLFK+M+DEDC++L LA+RPEKL++T+I VPP  I
Sbjct: 203  AISHTKE-SKASFSVVDILNPVKVLSLFKRMMDEDCDLLNLAERPEKLVLTNIGVPPIAI 261

Query: 1568 RPSVLV-GGTRSNENDITERLKRIIQANARVRTMLD---GTNRSQTDWEYLQIEVAQYIN 1401
            RPSV + GGT+SNEND+TERLKRIIQANA +   L     T++    W+YLQIEVAQYIN
Sbjct: 262  RPSVFMDGGTQSNENDVTERLKRIIQANASLHQELQDTGSTSKCLAGWDYLQIEVAQYIN 321

Query: 1400 SAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAKRVEFTGRTVISPDPNLKITEVGV 1221
            S  +GVP  MQA RPLSGFVQRLKGKQGRFR NLS KRVE+TGRTVISPDPNLKITEV +
Sbjct: 322  SDVRGVPLAMQAARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAI 381

Query: 1220 PILMAQTLTFPERVTSHNIEKLRQCVSNGSNKYPGAKFLTFPDGSKVSLMFPGRKRYADE 1041
            PILMA+ L++PERV+ HNIEKLRQC+ NG  KYPGAK + +PDGS  SLMF GRKR+ADE
Sbjct: 382  PILMAKILSYPERVSHHNIEKLRQCILNGPFKYPGAKLIRYPDGSMRSLMFSGRKRFADE 441

Query: 1040 LKIGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRAKIMPWRTLRFNESVCNPYNADFDGD 861
            LK GYIV+RHLEDGD+VLFNRQPSLHRMSIM HRA+IMPWRTLRFNESVCNPYNADFDGD
Sbjct: 442  LKYGYIVERHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGD 501

Query: 860  EMNMHVPQTEDARTEALTLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAA 681
            EMNMHVPQTE+ARTEAL LMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAA
Sbjct: 502  EMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAA 561

Query: 680  FSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSVLVRPNASLRVYVNLTVTEKTFTK 501
            FSLMCSYMGDGMD VDLPTP I KP+ELWTGKQLF+VL+RP+A++RVY+NLTV EKT+ K
Sbjct: 562  FSLMCSYMGDGMDLVDLPTPAIIKPVELWTGKQLFNVLLRPHANVRVYLNLTVMEKTYNK 621

Query: 500  SWKREKTMCPNDGFVYFRNSELISGQLGKATLGNGDKNGLFSILLRDYNAHAAASCMNRL 321
              + ++TMCP+DGFVYFRNSELISGQLGKATLGNG+K+GLFS+LLRDYNAHAAA+CMNRL
Sbjct: 622  R-RGKETMCPSDGFVYFRNSELISGQLGKATLGNGNKDGLFSVLLRDYNAHAAAACMNRL 680

Query: 320  AKLSARWIGNHGFSIGIDDVQPGESLSCQKTDKINEGYSKCDEFIKAYNDGKLELLGGCD 141
            AKLSARWIGNHGFSIGIDDVQPG  L+ QK+ +I EGY  C E I+ YN GKL+L  GC+
Sbjct: 681  AKLSARWIGNHGFSIGIDDVQPGGLLNDQKSKRIEEGYENCHELIQQYNKGKLKLQPGCN 740

Query: 140  AAQTLEVRITGQLNTIRETTGDVCMAELHWRNSPLIMSQCGSKGSP 3
            AAQTLE  ITG LN IRETT +VCM ELHWRNSPLIMSQCGSKGSP
Sbjct: 741  AAQTLEAEITGVLNKIRETTANVCMEELHWRNSPLIMSQCGSKGSP 786


>emb|CBI16226.3| unnamed protein product [Vitis vinifera]
          Length = 1819

 Score =  914 bits (2361), Expect = 0.0
 Identities = 453/586 (77%), Positives = 511/586 (87%), Gaps = 4/586 (0%)
 Frame = -1

Query: 1748 AVSHIKEQSRGSVNMVYMLTPAKVLSLFKKMLDEDCEVLYLADRPEKLIITSIAVPPTVI 1569
            A+SH KE S+ S ++V +L P KVLSLFK+M+DEDC++L LA+RPEKL++T+I VPP  I
Sbjct: 203  AISHTKE-SKASFSVVDILNPVKVLSLFKRMMDEDCDLLNLAERPEKLVLTNIGVPPIAI 261

Query: 1568 RPSVLV-GGTRSNENDITERLKRIIQANARVRTMLD---GTNRSQTDWEYLQIEVAQYIN 1401
            RPSV + GGT+SNEND+TERLKRIIQANA +   L     T++    W+YLQIEVAQYIN
Sbjct: 262  RPSVFMDGGTQSNENDVTERLKRIIQANASLHQELQDTGSTSKCLAGWDYLQIEVAQYIN 321

Query: 1400 SAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAKRVEFTGRTVISPDPNLKITEVGV 1221
            S  +GVP  MQA RPLSGFVQRLKGKQGRFR NLS KRVE+TGRTVISPDPNLKITEV +
Sbjct: 322  SDVRGVPLAMQAARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAI 381

Query: 1220 PILMAQTLTFPERVTSHNIEKLRQCVSNGSNKYPGAKFLTFPDGSKVSLMFPGRKRYADE 1041
            PILMA+ L++PERV+ HNIEKLRQC+ NG  KYPGAK + +PDGS  SLMF GRKR+ADE
Sbjct: 382  PILMAKILSYPERVSHHNIEKLRQCILNGPFKYPGAKLIRYPDGSMRSLMFSGRKRFADE 441

Query: 1040 LKIGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRAKIMPWRTLRFNESVCNPYNADFDGD 861
            LK GYIV+RHLEDGD+VLFNRQPSLHRMSIM HRA+IMPWRTLRFNESVCNPYNADFDGD
Sbjct: 442  LKYGYIVERHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGD 501

Query: 860  EMNMHVPQTEDARTEALTLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAA 681
            EMNMHVPQTE+ARTEAL LMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAA
Sbjct: 502  EMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAA 561

Query: 680  FSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSVLVRPNASLRVYVNLTVTEKTFTK 501
            FSLMCSYMGDGMD VDLPTP I K +ELWTGKQLF+VL+RP+A++RVY+NLTV EKT+ K
Sbjct: 562  FSLMCSYMGDGMDLVDLPTPAIIKAMELWTGKQLFNVLLRPHANVRVYLNLTVMEKTYNK 621

Query: 500  SWKREKTMCPNDGFVYFRNSELISGQLGKATLGNGDKNGLFSILLRDYNAHAAASCMNRL 321
              + ++TMCP+DGFVYFRNSELISGQLGKATLGNG+K+GLFS+LLRDYNAHAAA+CMNRL
Sbjct: 622  R-RGKETMCPSDGFVYFRNSELISGQLGKATLGNGNKDGLFSVLLRDYNAHAAAACMNRL 680

Query: 320  AKLSARWIGNHGFSIGIDDVQPGESLSCQKTDKINEGYSKCDEFIKAYNDGKLELLGGCD 141
            AKLSARWIGNHGFSIGIDDVQPG  L+ QK+ +I EGY  C E I+ YN GKL+L  GC+
Sbjct: 681  AKLSARWIGNHGFSIGIDDVQPGGLLNDQKSKRIEEGYENCHELIQQYNKGKLKLQPGCN 740

Query: 140  AAQTLEVRITGQLNTIRETTGDVCMAELHWRNSPLIMSQCGSKGSP 3
            AAQTLE  ITG LN IRETT +VCM ELHWRNSPLIMSQCGSKGSP
Sbjct: 741  AAQTLEAEITGVLNKIRETTANVCMEELHWRNSPLIMSQCGSKGSP 786


>ref|XP_006365152.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X2 [Solanum tuberosum]
          Length = 1243

 Score =  876 bits (2264), Expect = 0.0
 Identities = 433/580 (74%), Positives = 492/580 (84%), Gaps = 3/580 (0%)
 Frame = -1

Query: 1733 KEQSRGSVNMVYMLTPAKVLSLFKKMLDEDCEVLYLADRPEKLIITSIAVPPTVIRPSVL 1554
            K + R SV++   L P  V SLFK M DEDCE+LYL+DRPEKL++TSI VPP  IRPSV 
Sbjct: 205  KRELRASVSVPPELDPKVVYSLFKNMSDEDCELLYLSDRPEKLLVTSIPVPPIAIRPSVF 264

Query: 1553 V-GGTRSNENDITERLKRIIQANARVRTMLDGTN--RSQTDWEYLQIEVAQYINSAEKGV 1383
            V GGT+SNENDITERLKRIIQANA +   +  ++  +S   W  LQ+EVAQYINS  +GV
Sbjct: 265  VDGGTQSNENDITERLKRIIQANASLHQEMSDSSPVKSLNLWIDLQMEVAQYINSDVRGV 324

Query: 1382 PAHMQAPRPLSGFVQRLKGKQGRFRQNLSAKRVEFTGRTVISPDPNLKITEVGVPILMAQ 1203
            P HMQA RPLSGF QRLKGKQGRFR NLS KRVE+TGRTVISPDPNLKITEV +PILMAQ
Sbjct: 325  PLHMQAQRPLSGFTQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPILMAQ 384

Query: 1202 TLTFPERVTSHNIEKLRQCVSNGSNKYPGAKFLTFPDGSKVSLMFPGRKRYADELKIGYI 1023
             LT+PERV+ HNIEKLRQCV NG NKYPGAKF+  PDGS++SLMF  RKR+ADELK GYI
Sbjct: 385  ILTYPERVSQHNIEKLRQCVRNGPNKYPGAKFIRHPDGSEISLMFTSRKRHADELKFGYI 444

Query: 1022 VDRHLEDGDIVLFNRQPSLHRMSIMSHRAKIMPWRTLRFNESVCNPYNADFDGDEMNMHV 843
            VDRHLEDGDIVLFNRQPSLHRMSIMSHRA+IMPWRTLRFNESVCNPYNADFDGDEMNMHV
Sbjct: 445  VDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHV 504

Query: 842  PQTEDARTEALTLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCS 663
            PQTE+ARTEAL LMGVQNNLCTPK+GEILVASTQDFLTSSFLITRKDTFY+RA+FSL+CS
Sbjct: 505  PQTEEARTEALMLMGVQNNLCTPKSGEILVASTQDFLTSSFLITRKDTFYNRASFSLICS 564

Query: 662  YMGDGMDHVDLPTPTIFKPIELWTGKQLFSVLVRPNASLRVYVNLTVTEKTFTKSWKREK 483
            YMGD MD  DLP+P   KP+ELWTGKQLF +L+RP + +RVYVNLTVTEK+++    + +
Sbjct: 565  YMGDAMDPTDLPSPAFIKPVELWTGKQLFHMLLRPYSKMRVYVNLTVTEKSYS---GKGE 621

Query: 482  TMCPNDGFVYFRNSELISGQLGKATLGNGDKNGLFSILLRDYNAHAAASCMNRLAKLSAR 303
            TMCP+DGFVYFRNSELISGQLGKATLGNG+K+GL+S+LLRDY +HAAA+CMNRLAKLSAR
Sbjct: 622  TMCPSDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYKSHAAATCMNRLAKLSAR 681

Query: 302  WIGNHGFSIGIDDVQPGESLSCQKTDKINEGYSKCDEFIKAYNDGKLELLGGCDAAQTLE 123
            WIGNHGFSIGIDDV PGE+L  QK  +I+  Y KC++ I  +N+GKL +  GCDAAQTLE
Sbjct: 682  WIGNHGFSIGIDDVTPGENLVKQKQGEIHRNYKKCEDCITQFNEGKLAVQPGCDAAQTLE 741

Query: 122  VRITGQLNTIRETTGDVCMAELHWRNSPLIMSQCGSKGSP 3
              +T  LN +R+  G +CM  L WRNSPLIMSQCGSKGSP
Sbjct: 742  AEVTMSLNKVRDDIGKICMKALDWRNSPLIMSQCGSKGSP 781


>ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X1 [Solanum tuberosum]
          Length = 1394

 Score =  876 bits (2264), Expect = 0.0
 Identities = 433/580 (74%), Positives = 492/580 (84%), Gaps = 3/580 (0%)
 Frame = -1

Query: 1733 KEQSRGSVNMVYMLTPAKVLSLFKKMLDEDCEVLYLADRPEKLIITSIAVPPTVIRPSVL 1554
            K + R SV++   L P  V SLFK M DEDCE+LYL+DRPEKL++TSI VPP  IRPSV 
Sbjct: 205  KRELRASVSVPPELDPKVVYSLFKNMSDEDCELLYLSDRPEKLLVTSIPVPPIAIRPSVF 264

Query: 1553 V-GGTRSNENDITERLKRIIQANARVRTMLDGTN--RSQTDWEYLQIEVAQYINSAEKGV 1383
            V GGT+SNENDITERLKRIIQANA +   +  ++  +S   W  LQ+EVAQYINS  +GV
Sbjct: 265  VDGGTQSNENDITERLKRIIQANASLHQEMSDSSPVKSLNLWIDLQMEVAQYINSDVRGV 324

Query: 1382 PAHMQAPRPLSGFVQRLKGKQGRFRQNLSAKRVEFTGRTVISPDPNLKITEVGVPILMAQ 1203
            P HMQA RPLSGF QRLKGKQGRFR NLS KRVE+TGRTVISPDPNLKITEV +PILMAQ
Sbjct: 325  PLHMQAQRPLSGFTQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPILMAQ 384

Query: 1202 TLTFPERVTSHNIEKLRQCVSNGSNKYPGAKFLTFPDGSKVSLMFPGRKRYADELKIGYI 1023
             LT+PERV+ HNIEKLRQCV NG NKYPGAKF+  PDGS++SLMF  RKR+ADELK GYI
Sbjct: 385  ILTYPERVSQHNIEKLRQCVRNGPNKYPGAKFIRHPDGSEISLMFTSRKRHADELKFGYI 444

Query: 1022 VDRHLEDGDIVLFNRQPSLHRMSIMSHRAKIMPWRTLRFNESVCNPYNADFDGDEMNMHV 843
            VDRHLEDGDIVLFNRQPSLHRMSIMSHRA+IMPWRTLRFNESVCNPYNADFDGDEMNMHV
Sbjct: 445  VDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHV 504

Query: 842  PQTEDARTEALTLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCS 663
            PQTE+ARTEAL LMGVQNNLCTPK+GEILVASTQDFLTSSFLITRKDTFY+RA+FSL+CS
Sbjct: 505  PQTEEARTEALMLMGVQNNLCTPKSGEILVASTQDFLTSSFLITRKDTFYNRASFSLICS 564

Query: 662  YMGDGMDHVDLPTPTIFKPIELWTGKQLFSVLVRPNASLRVYVNLTVTEKTFTKSWKREK 483
            YMGD MD  DLP+P   KP+ELWTGKQLF +L+RP + +RVYVNLTVTEK+++    + +
Sbjct: 565  YMGDAMDPTDLPSPAFIKPVELWTGKQLFHMLLRPYSKMRVYVNLTVTEKSYS---GKGE 621

Query: 482  TMCPNDGFVYFRNSELISGQLGKATLGNGDKNGLFSILLRDYNAHAAASCMNRLAKLSAR 303
            TMCP+DGFVYFRNSELISGQLGKATLGNG+K+GL+S+LLRDY +HAAA+CMNRLAKLSAR
Sbjct: 622  TMCPSDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYKSHAAATCMNRLAKLSAR 681

Query: 302  WIGNHGFSIGIDDVQPGESLSCQKTDKINEGYSKCDEFIKAYNDGKLELLGGCDAAQTLE 123
            WIGNHGFSIGIDDV PGE+L  QK  +I+  Y KC++ I  +N+GKL +  GCDAAQTLE
Sbjct: 682  WIGNHGFSIGIDDVTPGENLVKQKQGEIHRNYKKCEDCITQFNEGKLAVQPGCDAAQTLE 741

Query: 122  VRITGQLNTIRETTGDVCMAELHWRNSPLIMSQCGSKGSP 3
              +T  LN +R+  G +CM  L WRNSPLIMSQCGSKGSP
Sbjct: 742  AEVTMSLNKVRDDIGKICMKALDWRNSPLIMSQCGSKGSP 781


>ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Solanum
            lycopersicum]
          Length = 1390

 Score =  872 bits (2253), Expect = 0.0
 Identities = 430/580 (74%), Positives = 490/580 (84%), Gaps = 3/580 (0%)
 Frame = -1

Query: 1733 KEQSRGSVNMVYMLTPAKVLSLFKKMLDEDCEVLYLADRPEKLIITSIAVPPTVIRPSVL 1554
            K + R SV++   + P  V SLFK M DEDCE+LYL+DRPEKL++TSI VPP  IRPSV 
Sbjct: 205  KRELRASVSVPPEIDPKVVYSLFKNMSDEDCELLYLSDRPEKLLVTSIPVPPIAIRPSVF 264

Query: 1553 V-GGTRSNENDITERLKRIIQANARVRTMLDGTN--RSQTDWEYLQIEVAQYINSAEKGV 1383
            V GGT+SNENDITERLKRIIQANA +   +  ++  +S   W  LQ+EVAQYINS  +GV
Sbjct: 265  VDGGTQSNENDITERLKRIIQANASLHQEMSDSSPVKSLNQWIDLQMEVAQYINSDVRGV 324

Query: 1382 PAHMQAPRPLSGFVQRLKGKQGRFRQNLSAKRVEFTGRTVISPDPNLKITEVGVPILMAQ 1203
            P  MQ PRPLSGF QRLKGKQGRFR NLS KRVE+TGRTVISPDPNLKITEV +PILMAQ
Sbjct: 325  PLQMQPPRPLSGFTQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPILMAQ 384

Query: 1202 TLTFPERVTSHNIEKLRQCVSNGSNKYPGAKFLTFPDGSKVSLMFPGRKRYADELKIGYI 1023
             LT+PERV+ HNIEKLRQCV NG NKYPGAKF+  PDG+++SLMF  RKRYADELK GYI
Sbjct: 385  ILTYPERVSQHNIEKLRQCVRNGPNKYPGAKFIRHPDGNEMSLMFSSRKRYADELKFGYI 444

Query: 1022 VDRHLEDGDIVLFNRQPSLHRMSIMSHRAKIMPWRTLRFNESVCNPYNADFDGDEMNMHV 843
            VDRHLEDGDIVLFNRQPSLHRMSIMSHRA+IMPWRTLRFNESVCNPYNADFDGDEMNMHV
Sbjct: 445  VDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHV 504

Query: 842  PQTEDARTEALTLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCS 663
            PQTE+ARTEAL LMGVQNNLCTPK+GEILVASTQDFLTSSFLITRKDTFY+RA+FSL+CS
Sbjct: 505  PQTEEARTEALMLMGVQNNLCTPKSGEILVASTQDFLTSSFLITRKDTFYNRASFSLICS 564

Query: 662  YMGDGMDHVDLPTPTIFKPIELWTGKQLFSVLVRPNASLRVYVNLTVTEKTFTKSWKREK 483
            YMGD MD  DLP+P   KP+ELWTGKQLF VL+RP + +RVYVNLT+TEK+++    + +
Sbjct: 565  YMGDAMDPTDLPSPAFIKPVELWTGKQLFHVLLRPYSKMRVYVNLTLTEKSYS---GKGE 621

Query: 482  TMCPNDGFVYFRNSELISGQLGKATLGNGDKNGLFSILLRDYNAHAAASCMNRLAKLSAR 303
            TMC +DGFVYFRNSELISGQLGKATLGNG+K+GL+S+LLRDY +HAAA+CMNRLAKLSAR
Sbjct: 622  TMCSSDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYESHAAATCMNRLAKLSAR 681

Query: 302  WIGNHGFSIGIDDVQPGESLSCQKTDKINEGYSKCDEFIKAYNDGKLELLGGCDAAQTLE 123
            WIGNHGFSIGIDDV PGE+L  QK  +I+  Y KC++ I  +N+GKL +  GCDAAQTLE
Sbjct: 682  WIGNHGFSIGIDDVTPGENLVKQKQGEIHRNYKKCEDCITQFNEGKLAVQPGCDAAQTLE 741

Query: 122  VRITGQLNTIRETTGDVCMAELHWRNSPLIMSQCGSKGSP 3
              +T  LN +R+  G +CM  L WRNSPLIMSQCGSKGSP
Sbjct: 742  AEVTMSLNKVRDDIGKICMKALDWRNSPLIMSQCGSKGSP 781


>ref|XP_007036220.1| DNA-directed RNA polymerase [Theobroma cacao]
            gi|508773465|gb|EOY20721.1| DNA-directed RNA polymerase
            [Theobroma cacao]
          Length = 1395

 Score =  868 bits (2243), Expect = 0.0
 Identities = 437/593 (73%), Positives = 497/593 (83%), Gaps = 12/593 (2%)
 Frame = -1

Query: 1748 AVSHIKEQSRGSVNMV-YMLTPAKVLSLFKKMLDEDCEVLYLADRPEKLIITSIAVPPTV 1572
            A+SH KE S+ S N+  Y+L P KVLSLFK+M D DCE+LYL+DRPEKLIIT+IAVPP  
Sbjct: 200  AISHTKE-SKASFNVATYVLNPVKVLSLFKRMTDLDCELLYLSDRPEKLIITNIAVPPIP 258

Query: 1571 IRPSVLVGGTRSNENDITERLKRIIQANARVRTMLDGTN---RSQTDWEYLQIEVAQYIN 1401
            IRPSV++ G++SNENDITERLKRIIQANA +R  L  TN   +    WE LQ+EVAQYIN
Sbjct: 259  IRPSVIMDGSQSNENDITERLKRIIQANASLRQELVETNAAFKCLGGWEMLQVEVAQYIN 318

Query: 1400 SAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAKRVEFTGRTVISPDPNLKITEVGV 1221
            S  +GVP  MQ  +PLSGFVQR+KGK GRFR NLS KRVE+TGRTVISPDPNLKITEV +
Sbjct: 319  SDVRGVPFSMQVSKPLSGFVQRIKGKHGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAI 378

Query: 1220 PILMAQTLTFPERVTSHNIEKLRQCVSNGSNKYPGAKFLTFPDGSKVSLMFPGRKRYADE 1041
            PI MA+ LT+PERV++HNIEKLRQCV NG +KYPGA+ + +PDGS   L+   RKR ADE
Sbjct: 379  PIHMARILTYPERVSNHNIEKLRQCVRNGPSKYPGARMVRYPDGSARLLIGDYRKRLADE 438

Query: 1040 LKIGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRAKIMPWRTLRFNESVCNPYNADFDGD 861
            LK G +VDRHLEDGDIVLFNRQPSLHRMSIM HRA+IMPWRTLRFNESVCNPYNADFDGD
Sbjct: 439  LKFGCVVDRHLEDGDIVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGD 498

Query: 860  EMNMHVPQTEDARTEALTLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAA 681
            EMNMHVPQTE+ARTEAL LMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD FYDRAA
Sbjct: 499  EMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDIFYDRAA 558

Query: 680  FSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSVLVRPNASLRVYVNLTVTEKTFTK 501
            FSL+CSYMGDGMD +DLPTP + KPIELWTGKQLFSVL+RP+AS+RVY+NL V E+ ++K
Sbjct: 559  FSLICSYMGDGMDLIDLPTPALLKPIELWTGKQLFSVLLRPHASVRVYLNLIVKERNYSK 618

Query: 500  SWKRE--------KTMCPNDGFVYFRNSELISGQLGKATLGNGDKNGLFSILLRDYNAHA 345
               +         +TMCP+DGFVY RNSELI GQLGKATLGNG+K+GL+S+LLRDYNAHA
Sbjct: 619  KIIKRIGNKEIEVETMCPDDGFVYIRNSELICGQLGKATLGNGNKDGLYSVLLRDYNAHA 678

Query: 344  AASCMNRLAKLSARWIGNHGFSIGIDDVQPGESLSCQKTDKINEGYSKCDEFIKAYNDGK 165
            AA+CMNRLAKLSARWIGNHGFSIGIDDVQPG+ L+ +K   I+  Y KCDE I+ +N+GK
Sbjct: 679  AAACMNRLAKLSARWIGNHGFSIGIDDVQPGKRLNDEKALTISGDYKKCDEEIQTFNEGK 738

Query: 164  LELLGGCDAAQTLEVRITGQLNTIRETTGDVCMAELHWRNSPLIMSQCGSKGS 6
            L+   G DAAQTLE  +T  LN IR+ TG VCM ELHWRNSPLIMSQCGSKGS
Sbjct: 739  LKPKPGYDAAQTLEANVTAILNNIRDKTGKVCMKELHWRNSPLIMSQCGSKGS 791


>ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X1 [Citrus sinensis] gi|568870034|ref|XP_006488217.1|
            PREDICTED: DNA-directed RNA polymerase III subunit
            rpc1-like isoform X2 [Citrus sinensis]
          Length = 1404

 Score =  864 bits (2233), Expect = 0.0
 Identities = 436/594 (73%), Positives = 489/594 (82%), Gaps = 12/594 (2%)
 Frame = -1

Query: 1748 AVSHIKEQSRGSVNMV-YMLTPAKVLSLFKKMLDEDCEVLYLADRPEKLIITSIAVPPTV 1572
            A++H KE S+ +VN+  Y+L P  VL LFK+M D DCEVLYL++RPEKLIIT+IAVPP  
Sbjct: 207  AITHTKE-SKAAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVPPIA 265

Query: 1571 IRPSVLVGGTRSNENDITERLKRIIQANARVRTMLDGTN---RSQTDWEYLQIEVAQYIN 1401
            IRPSV++ G++SNENDITERLKRIIQ NA ++  L   N   +S   WE LQ+EVAQYIN
Sbjct: 266  IRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYIN 325

Query: 1400 SAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAKRVEFTGRTVISPDPNLKITEVGV 1221
            S  +GVP  MQ  RPLSGFVQRLKGKQGRFR NLS KRVE+TGRTVISPDPNLKITEV +
Sbjct: 326  SDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAI 385

Query: 1220 PILMAQTLTFPERVTSHNIEKLRQCVSNGSNKYPGAKFLTFPDGSKVSLMFPGRKRYADE 1041
            PI MA+ LT+PERV+ HNIEKLRQC+ NG +KYPGA+ + +PDG+   L    R + A E
Sbjct: 386  PIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVE 445

Query: 1040 LKIGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRAKIMPWRTLRFNESVCNPYNADFDGD 861
            LK G IVDRHLEDGD+VLFNRQPSLHRMSIM HRA+IMPWRTLRFNESVCNPYNADFDGD
Sbjct: 446  LKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGD 505

Query: 860  EMNMHVPQTEDARTEALTLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAA 681
            EMNMHVPQTE+ARTEAL LMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAA
Sbjct: 506  EMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAA 565

Query: 680  FSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSVLVRPNASLRVYVNLTVTEKTFTK 501
            FSLMC YMGDGMD VDLPTP I KP+ELWTGKQLFSVL+RP+A++RVYVNLTV EKT++ 
Sbjct: 566  FSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSN 625

Query: 500  SWKRE--------KTMCPNDGFVYFRNSELISGQLGKATLGNGDKNGLFSILLRDYNAHA 345
               R         +TMCPNDGFVYFRNSELISGQLGKATLGNG+K+GL+S+LLRDY AHA
Sbjct: 626  KLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLRDYGAHA 685

Query: 344  AASCMNRLAKLSARWIGNHGFSIGIDDVQPGESLSCQKTDKINEGYSKCDEFIKAYNDGK 165
             + CMNRLAKLSARWIGNHGFSIGIDDVQP + LS +K   I+E Y  C+  IK YN+GK
Sbjct: 686  TSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGK 745

Query: 164  LELLGGCDAAQTLEVRITGQLNTIRETTGDVCMAELHWRNSPLIMSQCGSKGSP 3
            L+L  GCDAAQTLE  IT  LN IRE  G  CM  L WRNSPLIMSQCGSKGSP
Sbjct: 746  LQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSP 799


>ref|XP_004505924.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X2 [Cicer arietinum]
          Length = 1291

 Score =  857 bits (2215), Expect = 0.0
 Identities = 430/586 (73%), Positives = 488/586 (83%), Gaps = 4/586 (0%)
 Frame = -1

Query: 1748 AVSHIKEQSRGSVNMVYMLTPAKVLSLFKKMLDEDCEVLYLADRPEKLIITSIAVPPTVI 1569
            A+SH+KE    +      L P  V SLF KM DEDC +LYLA+RPEKLIIT+IAVPP VI
Sbjct: 95   ALSHMKEYRATNDLASRNLDPKSVHSLFTKMSDEDCALLYLAERPEKLIITNIAVPPIVI 154

Query: 1568 RPSVLVGGTRSNENDITERLKRIIQANARVRTMLDGTNRSQTDWEYLQIEVAQYINSAEK 1389
            RPSV++ G++SNENDITE+L++IIQANA +   L+ + + Q  +E LQ  VAQYINS  K
Sbjct: 155  RPSVIMDGSQSNENDITEKLRKIIQANAALHKELEESTKFQGGFEMLQFLVAQYINSDVK 214

Query: 1388 GVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAKRVEFTGRTVISPDPNLKITEVGVPILM 1209
            G P  MQA +PL+GFVQR+KGKQGRFR NLS KRVE+TGRTVISPDPNLKITEV +PI M
Sbjct: 215  GGPYSMQASKPLTGFVQRIKGKQGRFRSNLSGKRVEYTGRTVISPDPNLKITEVAIPIHM 274

Query: 1208 AQTLTFPERVTSHNIEKLRQCVSNGSNKYPGAKFLTFPDGSKVSLMFPGRKRYADELKIG 1029
            A+ LT+PERVT HNIEKLRQC+ NG +KYPGAK L    G+  +L    RKR ADEL+ G
Sbjct: 275  ARILTYPERVTHHNIEKLRQCLRNGPDKYPGAKLLRHAGGTTWNLKVSCRKRLADELRFG 334

Query: 1028 YIVDRHLEDGDIVLFNRQPSLHRMSIMSHRAKIMPWRTLRFNESVCNPYNADFDGDEMNM 849
             IVDRHLEDGD+VLFNRQPSLHRMS+M HRA+IMPWRTLRFNESVCNPYNADFDGDEMN+
Sbjct: 335  DIVDRHLEDGDVVLFNRQPSLHRMSMMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNL 394

Query: 848  HVPQTEDARTEALTLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLM 669
            HVPQTE+ARTEAL LM VQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDR+ FSL+
Sbjct: 395  HVPQTEEARTEALLLMTVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRSTFSLI 454

Query: 668  CSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSVLVRPNASLRVYVNLTVTEKTFTKSW-- 495
            CSYMGDGMD +DLPTP I KP+ELW+GKQLFS+L+RP+A++RVYVNLTV EKT       
Sbjct: 455  CSYMGDGMDPIDLPTPAIIKPVELWSGKQLFSILLRPHANVRVYVNLTVKEKTHNAKLDD 514

Query: 494  -KRE-KTMCPNDGFVYFRNSELISGQLGKATLGNGDKNGLFSILLRDYNAHAAASCMNRL 321
             KRE KTMCPNDGFVYFRNSELISGQLGK TLGNG+K+GLFS+LLRDY AHAAASCMNRL
Sbjct: 515  RKREMKTMCPNDGFVYFRNSELISGQLGKVTLGNGNKDGLFSVLLRDYKAHAAASCMNRL 574

Query: 320  AKLSARWIGNHGFSIGIDDVQPGESLSCQKTDKINEGYSKCDEFIKAYNDGKLELLGGCD 141
            AK SARWIGNHGFSIGIDDVQP E L  +K + I  GYS+CD FI+A+N GKLEL  GCD
Sbjct: 575  AKFSARWIGNHGFSIGIDDVQPKEILIHRKKETITTGYSECDGFIEAFNKGKLELAPGCD 634

Query: 140  AAQTLEVRITGQLNTIRETTGDVCMAELHWRNSPLIMSQCGSKGSP 3
            AAQTLE +I  +LN++R+TT  VCM  LHWRNSPLIMSQCGSKGSP
Sbjct: 635  AAQTLEAKIFQKLNSLRDTTAKVCMQTLHWRNSPLIMSQCGSKGSP 680


>ref|XP_004505923.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X1 [Cicer arietinum]
          Length = 1399

 Score =  857 bits (2215), Expect = 0.0
 Identities = 430/586 (73%), Positives = 488/586 (83%), Gaps = 4/586 (0%)
 Frame = -1

Query: 1748 AVSHIKEQSRGSVNMVYMLTPAKVLSLFKKMLDEDCEVLYLADRPEKLIITSIAVPPTVI 1569
            A+SH+KE    +      L P  V SLF KM DEDC +LYLA+RPEKLIIT+IAVPP VI
Sbjct: 203  ALSHMKEYRATNDLASRNLDPKSVHSLFTKMSDEDCALLYLAERPEKLIITNIAVPPIVI 262

Query: 1568 RPSVLVGGTRSNENDITERLKRIIQANARVRTMLDGTNRSQTDWEYLQIEVAQYINSAEK 1389
            RPSV++ G++SNENDITE+L++IIQANA +   L+ + + Q  +E LQ  VAQYINS  K
Sbjct: 263  RPSVIMDGSQSNENDITEKLRKIIQANAALHKELEESTKFQGGFEMLQFLVAQYINSDVK 322

Query: 1388 GVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAKRVEFTGRTVISPDPNLKITEVGVPILM 1209
            G P  MQA +PL+GFVQR+KGKQGRFR NLS KRVE+TGRTVISPDPNLKITEV +PI M
Sbjct: 323  GGPYSMQASKPLTGFVQRIKGKQGRFRSNLSGKRVEYTGRTVISPDPNLKITEVAIPIHM 382

Query: 1208 AQTLTFPERVTSHNIEKLRQCVSNGSNKYPGAKFLTFPDGSKVSLMFPGRKRYADELKIG 1029
            A+ LT+PERVT HNIEKLRQC+ NG +KYPGAK L    G+  +L    RKR ADEL+ G
Sbjct: 383  ARILTYPERVTHHNIEKLRQCLRNGPDKYPGAKLLRHAGGTTWNLKVSCRKRLADELRFG 442

Query: 1028 YIVDRHLEDGDIVLFNRQPSLHRMSIMSHRAKIMPWRTLRFNESVCNPYNADFDGDEMNM 849
             IVDRHLEDGD+VLFNRQPSLHRMS+M HRA+IMPWRTLRFNESVCNPYNADFDGDEMN+
Sbjct: 443  DIVDRHLEDGDVVLFNRQPSLHRMSMMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNL 502

Query: 848  HVPQTEDARTEALTLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLM 669
            HVPQTE+ARTEAL LM VQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDR+ FSL+
Sbjct: 503  HVPQTEEARTEALLLMTVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRSTFSLI 562

Query: 668  CSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSVLVRPNASLRVYVNLTVTEKTFTKSW-- 495
            CSYMGDGMD +DLPTP I KP+ELW+GKQLFS+L+RP+A++RVYVNLTV EKT       
Sbjct: 563  CSYMGDGMDPIDLPTPAIIKPVELWSGKQLFSILLRPHANVRVYVNLTVKEKTHNAKLDD 622

Query: 494  -KRE-KTMCPNDGFVYFRNSELISGQLGKATLGNGDKNGLFSILLRDYNAHAAASCMNRL 321
             KRE KTMCPNDGFVYFRNSELISGQLGK TLGNG+K+GLFS+LLRDY AHAAASCMNRL
Sbjct: 623  RKREMKTMCPNDGFVYFRNSELISGQLGKVTLGNGNKDGLFSVLLRDYKAHAAASCMNRL 682

Query: 320  AKLSARWIGNHGFSIGIDDVQPGESLSCQKTDKINEGYSKCDEFIKAYNDGKLELLGGCD 141
            AK SARWIGNHGFSIGIDDVQP E L  +K + I  GYS+CD FI+A+N GKLEL  GCD
Sbjct: 683  AKFSARWIGNHGFSIGIDDVQPKEILIHRKKETITTGYSECDGFIEAFNKGKLELAPGCD 742

Query: 140  AAQTLEVRITGQLNTIRETTGDVCMAELHWRNSPLIMSQCGSKGSP 3
            AAQTLE +I  +LN++R+TT  VCM  LHWRNSPLIMSQCGSKGSP
Sbjct: 743  AAQTLEAKIFQKLNSLRDTTAKVCMQTLHWRNSPLIMSQCGSKGSP 788


>ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Cucumis
            sativus]
          Length = 1400

 Score =  856 bits (2212), Expect = 0.0
 Identities = 427/571 (74%), Positives = 480/571 (84%), Gaps = 6/571 (1%)
 Frame = -1

Query: 1697 MLTPAKVLSLFKKMLDEDCEVLYLADRPEKLIITSIAVPPTVIRPSVLVGGTRSNENDIT 1518
            +L P +VL LF++M DEDCE+L+L++RPEKLIIT++ VPP  IRPSV++ G++SNENDIT
Sbjct: 216  ILNPFRVLCLFQRMSDEDCELLFLSNRPEKLIITNVLVPPIAIRPSVIMDGSQSNENDIT 275

Query: 1517 ERLKRIIQANARVRTMLDGTN---RSQTDWEYLQIEVAQYINSAEKGVPAHMQAPRPLSG 1347
            ERLKRIIQ NA V   L  +N   +    W+ LQ EVAQ INS  +G+P  MQ  +PL+G
Sbjct: 276  ERLKRIIQQNASVSQELSTSNSQAKCLESWDMLQSEVAQLINSDVRGIPFSMQVSKPLAG 335

Query: 1346 FVQRLKGKQGRFRQNLSAKRVEFTGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHN 1167
            FVQRLKGKQGRFR NL  KRVEFTGRTVISPDPNLKITEV VPI MA+ LT+PERVT HN
Sbjct: 336  FVQRLKGKQGRFRGNLCGKRVEFTGRTVISPDPNLKITEVAVPIHMARILTYPERVTRHN 395

Query: 1166 IEKLRQCVSNGSNKYPGAKFLTFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDIVL 987
            IEKLRQCVSNG +KYPGA+ L   DGS  SLM  GRKR ADELK G IV+RHLEDGD+VL
Sbjct: 396  IEKLRQCVSNGPDKYPGARMLRHLDGSMRSLMISGRKRLADELKYGEIVERHLEDGDVVL 455

Query: 986  FNRQPSLHRMSIMSHRAKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALT 807
            FNRQPSLHRMSIM HR ++MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEA+ 
Sbjct: 456  FNRQPSLHRMSIMCHRVRVMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAIL 515

Query: 806  LMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLP 627
            LMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMD VDLP
Sbjct: 516  LMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLP 575

Query: 626  TPTIFKPIELWTGKQLFSVLVRPNASLRVYVNLTVTEKTFTK---SWKREKTMCPNDGFV 456
            TP + KPIELWTGKQLFSVLVRP+AS++VY+NLTV EK+++K   + K  +TMCPNDGFV
Sbjct: 576  TPALVKPIELWTGKQLFSVLVRPHASMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFV 635

Query: 455  YFRNSELISGQLGKATLGNGDKNGLFSILLRDYNAHAAASCMNRLAKLSARWIGNHGFSI 276
            YFRNSELISGQ+GKATLGNG+K+GL+S+LLRDY AHAAA CMNRLAKLSARWIGNHGFSI
Sbjct: 636  YFRNSELISGQVGKATLGNGNKDGLYSVLLRDYKAHAAAVCMNRLAKLSARWIGNHGFSI 695

Query: 275  GIDDVQPGESLSCQKTDKINEGYSKCDEFIKAYNDGKLELLGGCDAAQTLEVRITGQLNT 96
            GIDDVQPG+ L  +K   I EGY  CD+ I  +N G L    GCDAAQ+LE +IT  LN 
Sbjct: 696  GIDDVQPGDQLVKKKQTTILEGYRDCDKQINLFNTGNLPPEAGCDAAQSLESKITQILNG 755

Query: 95   IRETTGDVCMAELHWRNSPLIMSQCGSKGSP 3
            IRE T +VCM  LHWRNSPLIMSQCGSKGSP
Sbjct: 756  IREATANVCMQNLHWRNSPLIMSQCGSKGSP 786


>ref|XP_007132141.1| hypothetical protein PHAVU_011G070100g [Phaseolus vulgaris]
            gi|561005141|gb|ESW04135.1| hypothetical protein
            PHAVU_011G070100g [Phaseolus vulgaris]
          Length = 1392

 Score =  853 bits (2203), Expect = 0.0
 Identities = 426/587 (72%), Positives = 492/587 (83%), Gaps = 6/587 (1%)
 Frame = -1

Query: 1745 VSHIKEQSRGSVNMVYMLTPAKVLSLFKKMLDEDCEVLYLADRPEKLIITSIAVPPTVIR 1566
            +S IK+    +     +L P +VLSLF+KMLDEDCE+LY+A+RPEKLIIT+I VPP  IR
Sbjct: 203  LSRIKDSKATANVSNRILNPFQVLSLFRKMLDEDCELLYVAERPEKLIITNIVVPPIAIR 262

Query: 1565 PSVLVGGTRSNENDITERLKRIIQANARVRTMLDGTNRSQT---DWEYLQIEVAQYINSA 1395
            PSV++  + SNENDITERLK IIQANA +R  L  ++ S      WE LQ EVAQ+INS 
Sbjct: 263  PSVVMDESLSNENDITERLKNIIQANAVLRQELQESSVSSKFLDGWEILQNEVAQFINSE 322

Query: 1394 EKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAKRVEFTGRTVISPDPNLKITEVGVPI 1215
             +G+P +MQ+ + L+GFVQRLKGK GRFR NLS KRVE+TGRTVISPDPNLKI+EV +PI
Sbjct: 323  VRGIPFYMQSTKQLAGFVQRLKGKHGRFRGNLSGKRVEYTGRTVISPDPNLKISEVAIPI 382

Query: 1214 LMAQTLTFPERVTSHNIEKLRQCVSNGSNKYPGAKFLTFPDGSKVSLMFPGRKRYADELK 1035
            LMA  LT+PERVT HNIEKLRQCV NG +KYPGA+ L    G   SL    RKR ADEL+
Sbjct: 383  LMASILTYPERVTHHNIEKLRQCVRNGPDKYPGARMLRRDGGHSWSLKVLCRKRAADELR 442

Query: 1034 IGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRAKIMPWRTLRFNESVCNPYNADFDGDEM 855
            IG IVDRHLEDGDIVLFNRQPSLHRMSIMSHRA+IMPWRTLRFNESVCNPYNADFDGDEM
Sbjct: 443  IGDIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNESVCNPYNADFDGDEM 502

Query: 854  NMHVPQTEDARTEALTLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS 675
            N+HVPQTE+ARTEA+ LMGVQNNLCTPKNGEILVASTQDFLTSSFL+TRKDTFYDR+AF+
Sbjct: 503  NLHVPQTEEARTEAILLMGVQNNLCTPKNGEILVASTQDFLTSSFLVTRKDTFYDRSAFT 562

Query: 674  LMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSVLVRPNASLRVYVNLTVTEKTFTK-- 501
             +C+++GDG+D +DLPTP I KP+ELW+GKQLFS+L+RP+A+ +VYVNLTV EKT+TK  
Sbjct: 563  NICTFIGDGLDLIDLPTPAIVKPVELWSGKQLFSLLLRPHANFKVYVNLTVKEKTYTKLD 622

Query: 500  SWKRE-KTMCPNDGFVYFRNSELISGQLGKATLGNGDKNGLFSILLRDYNAHAAASCMNR 324
              KRE KT+CPNDGFVYFRN+ELISGQ+GK TLGNG+K+GLFS+LLRDY AHAAASCMNR
Sbjct: 623  DKKRELKTLCPNDGFVYFRNTELISGQIGKVTLGNGNKDGLFSVLLRDYKAHAAASCMNR 682

Query: 323  LAKLSARWIGNHGFSIGIDDVQPGESLSCQKTDKINEGYSKCDEFIKAYNDGKLELLGGC 144
            LAKLSARWIGNHGFSIGIDDVQP E L  +K + ++EGY KCD  I+A+N GKLELL GC
Sbjct: 683  LAKLSARWIGNHGFSIGIDDVQPKEILIKKKDETLSEGYKKCDNHIQAFNKGKLELLAGC 742

Query: 143  DAAQTLEVRITGQLNTIRETTGDVCMAELHWRNSPLIMSQCGSKGSP 3
            DA QTLE +ITG LN +R+  G VCM  LHWRNSPLIMSQCGSKGSP
Sbjct: 743  DAPQTLETQITGVLNGLRDMAGKVCMQTLHWRNSPLIMSQCGSKGSP 789


>ref|XP_002300065.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|222847323|gb|EEE84870.1| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 1394

 Score =  852 bits (2202), Expect = 0.0
 Identities = 429/590 (72%), Positives = 486/590 (82%), Gaps = 8/590 (1%)
 Frame = -1

Query: 1748 AVSHIKEQSRGSVNMVYMLTPAKVLSLFKKMLDEDCEVLYLADRPEKLIITSIAVPPTVI 1569
            A+ H +E         Y+L P +VLSLF++M++EDCE+LYL  RPEKLIIT+IAVPP  I
Sbjct: 205  AIGHTREARAPIGLATYILNPVRVLSLFQRMVEEDCELLYLQGRPEKLIITTIAVPPISI 264

Query: 1568 RPSVLVGGTRSNENDITERLKRIIQANARVRT-MLDGTN---RSQTDWEYLQIEVAQYIN 1401
            RPSV   G++SNENDITERLK+IIQ NA++R  +L+G     +    W+ LQ  V  YIN
Sbjct: 265  RPSVFTEGSQSNENDITERLKQIIQFNAKLRLELLEGRRTGIKYLIGWDELQAVVTLYIN 324

Query: 1400 SAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAKRVEFTGRTVISPDPNLKITEVGV 1221
            S  + +P  MQ  RPLSGFVQRL GKQGRFRQNL+ KRVEFTGRTVISPDPNLKITEV +
Sbjct: 325  SDVR-IPLDMQVGRPLSGFVQRLTGKQGRFRQNLAGKRVEFTGRTVISPDPNLKITEVAI 383

Query: 1220 PILMAQTLTFPERVTSHNIEKLRQCVSNGSNKYPGAKFLTFPDGSKVSLMFPGRKRYADE 1041
            PI MA+ LT+PERVT HNIEKLRQCV+NGS KYPGA+ +T+PDGS   L    RKR A+E
Sbjct: 384  PIHMARILTYPERVTHHNIEKLRQCVNNGSYKYPGARMVTYPDGSSKMLTGNYRKRIAEE 443

Query: 1040 LKIGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRAKIMPWRTLRFNESVCNPYNADFDGD 861
            LK G IV RHLEDGD+VLFNRQPSLHRMSIM HRA+IMPWRTLRFNESVCNPYNADFDGD
Sbjct: 444  LKSGCIVHRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGD 503

Query: 860  EMNMHVPQTEDARTEALTLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAA 681
            EMNMHVPQTE+ARTEA  LMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAA
Sbjct: 504  EMNMHVPQTEEARTEAFLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAA 563

Query: 680  FSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSVLVRPNASLRVYVNLTVTEKTFTK 501
            FSLMCSYM DGMD VDLPTP++ KPIELWTGKQLFSVL+RP+A++RVYVNL + EK +++
Sbjct: 564  FSLMCSYMNDGMDLVDLPTPSVLKPIELWTGKQLFSVLLRPHANVRVYVNLILKEKNYSR 623

Query: 500  SWKREK----TMCPNDGFVYFRNSELISGQLGKATLGNGDKNGLFSILLRDYNAHAAASC 333
              K  K    TMCPNDG+VYFRNSELISGQLGKATLGNG+K+GL+SILLRDYNA+AAA+C
Sbjct: 624  PNKEHKKERETMCPNDGYVYFRNSELISGQLGKATLGNGNKDGLYSILLRDYNAYAAATC 683

Query: 332  MNRLAKLSARWIGNHGFSIGIDDVQPGESLSCQKTDKINEGYSKCDEFIKAYNDGKLELL 153
            MNRLAKLSARWIGNHGFSIGIDDVQPG+ L  +K   I+ GY  C++ I  YN G+L L 
Sbjct: 684  MNRLAKLSARWIGNHGFSIGIDDVQPGKKLIDEKGKTISNGYRHCNKLIADYNGGRLALK 743

Query: 152  GGCDAAQTLEVRITGQLNTIRETTGDVCMAELHWRNSPLIMSQCGSKGSP 3
             GCDA QTLE  IT +LN +RE  GDVCM ELHWRNSPLIMSQCGSKGSP
Sbjct: 744  SGCDATQTLETEITERLNKLREEAGDVCMKELHWRNSPLIMSQCGSKGSP 793


>ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Glycine
            max]
          Length = 1391

 Score =  850 bits (2197), Expect = 0.0
 Identities = 426/591 (72%), Positives = 495/591 (83%), Gaps = 10/591 (1%)
 Frame = -1

Query: 1748 AVSHIKEQSRGSVNMVY-MLTPAKVLSLFKKMLDEDCEVLYLADRPEKLIITSIAVPPTV 1572
            A+S +K+ SR + N+   +L P +VLSLFK+MLDEDCE+LY+A+RPEKLI+T++ VPP  
Sbjct: 202  ALSRMKD-SRATTNVSNRILNPFQVLSLFKRMLDEDCELLYVAERPEKLIMTNVVVPPIA 260

Query: 1571 IRPSVLVGGTRSNENDITERLKRIIQANARVRTMLDGTNRSQT---DWEYLQIEVAQYIN 1401
            IRPSV++  + SNENDITERLK IIQANA +R  L  +  S      W+ LQ EVAQ+IN
Sbjct: 261  IRPSVVMDESLSNENDITERLKNIIQANAVLRQELQESTFSSKFLDGWDILQNEVAQFIN 320

Query: 1400 SAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAKRVEFTGRTVISPDPNLKITEVGV 1221
            S  +G+P +MQ  + L+GFVQRLKGK GRFR NLS KRVE+TGRTVISPDPNLKI+EV +
Sbjct: 321  SDVRGIPFYMQPTKQLAGFVQRLKGKHGRFRGNLSGKRVEYTGRTVISPDPNLKISEVAI 380

Query: 1220 PILMAQTLTFPERVTSHNIEKLRQCVSNGSNKYPGAKFLTFPDGSKVSLMFPGRKRYADE 1041
            PI MA+ LT+PERVT HNIEKLRQCV NG +KYPGA+ L    G   SL    RKR ADE
Sbjct: 381  PIHMARILTYPERVTHHNIEKLRQCVRNGPDKYPGARMLRRDGGHSWSLKVLCRKRAADE 440

Query: 1040 LKIGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRAKIMPWRTLRFNESVCNPYNADFDGD 861
            L+IG IVDRHLEDGDIVLFNRQPSLHRMSIM HRA+IMPWRTLRFNESVCNPYNADFDGD
Sbjct: 441  LRIGDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGD 500

Query: 860  EMNMHVPQTEDARTEALTLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAA 681
            EMN+HVPQTE+ARTEA+ LMGV+NNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDR+ 
Sbjct: 501  EMNLHVPQTEEARTEAILLMGVENNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRST 560

Query: 680  FSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSVLVRPNASLRVYVNLTVTEKTFTK 501
            FSL+CSY+GDGMD +DLPTP I KP+ELW+GKQLFS+++RP+A++RVYVNLTV E+ +T+
Sbjct: 561  FSLICSYIGDGMDPIDLPTPAIVKPVELWSGKQLFSIILRPHANMRVYVNLTVKERNYTE 620

Query: 500  SWKRE------KTMCPNDGFVYFRNSELISGQLGKATLGNGDKNGLFSILLRDYNAHAAA 339
              K +      KT+CPNDGFVYFRNSELISGQ+GK TLGNG+K+GLFS+LLRDY AHAAA
Sbjct: 621  DKKIKDKKIEWKTLCPNDGFVYFRNSELISGQVGKVTLGNGNKDGLFSVLLRDYRAHAAA 680

Query: 338  SCMNRLAKLSARWIGNHGFSIGIDDVQPGESLSCQKTDKINEGYSKCDEFIKAYNDGKLE 159
            SCMNRLAKLSARWIGNHGFSIGIDDVQP E L  +K + I+EGY +CD+ I+A+N GKLE
Sbjct: 681  SCMNRLAKLSARWIGNHGFSIGIDDVQPKEILINKKDETISEGYRECDKHIEAFNKGKLE 740

Query: 158  LLGGCDAAQTLEVRITGQLNTIRETTGDVCMAELHWRNSPLIMSQCGSKGS 6
            LL GCDAAQTLE RITG LN +R+T G VCM  LHWRNSPLIMSQCGSKGS
Sbjct: 741  LLAGCDAAQTLETRITGVLNGLRDTAGKVCMQTLHWRNSPLIMSQCGSKGS 791


>ref|XP_007208145.1| hypothetical protein PRUPE_ppa024521mg, partial [Prunus persica]
            gi|462403787|gb|EMJ09344.1| hypothetical protein
            PRUPE_ppa024521mg, partial [Prunus persica]
          Length = 867

 Score =  849 bits (2193), Expect = 0.0
 Identities = 430/586 (73%), Positives = 489/586 (83%), Gaps = 5/586 (0%)
 Frame = -1

Query: 1745 VSHIKEQSRGSVNMV-YMLTPAKVLSLFKKMLDEDCEVLYLADRPEKLIITSIAVPPTVI 1569
            +SH KE S+ S N+  +ML PA++ SLFK+M+DEDCE+L L++RP+ LII +IAVPP  I
Sbjct: 211  LSHTKE-SKASFNVATHMLNPARIYSLFKRMVDEDCELLNLSNRPQNLIIKNIAVPPIAI 269

Query: 1568 RPSVLVGGTRSNENDITERLKRIIQANARVRTML---DGTNRSQTDWEYLQIEVAQYINS 1398
            RPSV+V  + SNENDITERLKRIIQ+NA +R  L       +    W+ LQ+EVAQYINS
Sbjct: 270  RPSVIVDRSLSNENDITERLKRIIQSNAILRRDLLEAKSAPKCLASWDILQVEVAQYINS 329

Query: 1397 AEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAKRVEFTGRTVISPDPNLKITEVGVP 1218
              +GVP  MQ  +PLSGFVQRLKGK GRFR NLS KRVE+TGRTVISPDPNLKITEVGVP
Sbjct: 330  DIRGVPFSMQTAKPLSGFVQRLKGKGGRFRGNLSGKRVEYTGRTVISPDPNLKITEVGVP 389

Query: 1217 ILMAQTLTFPERVTSHNIEKLRQCVSNGSNKYPGAKFLTFPDGSKVSLMFPGRKRYADEL 1038
            I MAQ LT+PERV+ HNIEKLRQCVSNG +KYPGA+ L  PDG++ SL    RK  AD L
Sbjct: 390  IKMAQILTYPERVSHHNIEKLRQCVSNGPDKYPGARMLRNPDGTEWSLKV-NRKNAADGL 448

Query: 1037 KIGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRAKIMPWRTLRFNESVCNPYNADFDGDE 858
            K G IV+RHLEDGDIVLFNRQPSLHRMSIM HRAK+MPWRTLRFNESVCNPYNADFDGDE
Sbjct: 449  KYGDIVERHLEDGDIVLFNRQPSLHRMSIMCHRAKVMPWRTLRFNESVCNPYNADFDGDE 508

Query: 857  MNMHVPQTEDARTEALTLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAF 678
            MNMHVPQTE+ARTEA+ LMGVQNNLCTPKNGE+LVASTQDFLTSSFLITRKDTFYDRA+F
Sbjct: 509  MNMHVPQTEEARTEAVMLMGVQNNLCTPKNGEVLVASTQDFLTSSFLITRKDTFYDRASF 568

Query: 677  SLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSVLVRPNASLRVYVNLTVTEKTFTKS 498
            SLMCSYMGDG D VDLPTP + KPIELWTGKQLFSVLVRPN+++RVY+N TV EK+++K+
Sbjct: 569  SLMCSYMGDGTDPVDLPTPAVIKPIELWTGKQLFSVLVRPNSNVRVYLNFTVNEKSYSKT 628

Query: 497  WK-REKTMCPNDGFVYFRNSELISGQLGKATLGNGDKNGLFSILLRDYNAHAAASCMNRL 321
                 + MCPNDGFVYFRNSELI+GQLGK TLGNG+K+GL+S+LLRDY AHAAASCMNRL
Sbjct: 629  EDGGPEAMCPNDGFVYFRNSELIAGQLGKGTLGNGNKDGLYSVLLRDYKAHAAASCMNRL 688

Query: 320  AKLSARWIGNHGFSIGIDDVQPGESLSCQKTDKINEGYSKCDEFIKAYNDGKLELLGGCD 141
            AKLSARWIGNHGFSIGI DVQP ++L  +K   I EGY+KC   IK YN+G+L L  GCD
Sbjct: 689  AKLSARWIGNHGFSIGISDVQPSDNLYNEKEKIIKEGYNKCAGKIKLYNEGQLPLEPGCD 748

Query: 140  AAQTLEVRITGQLNTIRETTGDVCMAELHWRNSPLIMSQCGSKGSP 3
            AAQ+LE  IT  LN IR+ TG +CM  LHWRNSPLIMSQCGSKGSP
Sbjct: 749  AAQSLESGITKILNNIRDQTGKLCMQTLHWRNSPLIMSQCGSKGSP 794


>ref|XP_002864665.1| hypothetical protein ARALYDRAFT_496142 [Arabidopsis lyrata subsp.
            lyrata] gi|297310500|gb|EFH40924.1| hypothetical protein
            ARALYDRAFT_496142 [Arabidopsis lyrata subsp. lyrata]
          Length = 1376

 Score =  845 bits (2184), Expect = 0.0
 Identities = 427/586 (72%), Positives = 481/586 (82%), Gaps = 4/586 (0%)
 Frame = -1

Query: 1748 AVSHIKEQSRGSVNMVYMLTPAKVLSLFKKMLDEDCEVLYLADRPEKLIITSIAVPPTVI 1569
            A+SH KE +R    + Y+L P  VL LFK M D+DCE+LY+A RPE LI T + VPP  I
Sbjct: 206  AISHTKESTRAINPLTYVLDPNLVLGLFKGMSDKDCELLYIAHRPENLITTCMLVPPLSI 265

Query: 1568 RPSVLVGGTRSNENDITERLKRIIQANARVRTMLDGTNRSQTD---WEYLQIEVAQYINS 1398
            RPSV++GGTRSNENDITERLK IIQ NA +  +L     S  +   W+ +Q EVA+YINS
Sbjct: 266  RPSVMIGGTRSNENDITERLKLIIQNNACLHRILSQPTTSPKNMQVWDTVQSEVAKYINS 325

Query: 1397 AEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAKRVEFTGRTVISPDPNLKITEVGVP 1218
              +GV  +     PLSG +QRLKGKQGRFR NLS KRVE+TGRTVISPDPNLKITEVG+P
Sbjct: 326  EVRGVQ-NQPEKTPLSGLLQRLKGKQGRFRANLSGKRVEYTGRTVISPDPNLKITEVGIP 384

Query: 1217 ILMAQTLTFPERVTSHNIEKLRQCVSNGSNKYPGAKFLTFPDGSKVSLMFPGRKRYADEL 1038
            ILMA+ LTFPE V+ HNIEKLRQCV NG NKYPGA+ + +PDGS  +L+   RKR ADEL
Sbjct: 385  ILMARILTFPECVSRHNIEKLRQCVRNGPNKYPGARNVRYPDGSSRTLVGDYRKRIADEL 444

Query: 1037 KIGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRAKIMPWRTLRFNESVCNPYNADFDGDE 858
             IG IVDRHLE+GD VLFNRQPSLHRMSIM HRA+IMPWRTLRFNESVCNPYNADFDGDE
Sbjct: 445  TIGCIVDRHLEEGDAVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDE 504

Query: 857  MNMHVPQTEDARTEALTLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAF 678
            MNMHVPQTE+ARTEA+TLMGVQNNLCTPKNGEILVASTQDFLT+SFLITRKDTFYDRAAF
Sbjct: 505  MNMHVPQTEEARTEAITLMGVQNNLCTPKNGEILVASTQDFLTTSFLITRKDTFYDRAAF 564

Query: 677  SLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSVLVRPNASLRVYVNLTVTEKTFTKS 498
            SL+CSYMGDGMD +DLPTPTI KPIELWTGKQLFSVL+RPNAS+RVYV L V EK F K 
Sbjct: 565  SLICSYMGDGMDAIDLPTPTILKPIELWTGKQLFSVLLRPNASVRVYVTLNVKEKNFKKG 624

Query: 497  WKR-EKTMCPNDGFVYFRNSELISGQLGKATLGNGDKNGLFSILLRDYNAHAAASCMNRL 321
                ++TMC NDG+VYFRNSELISGQLGKATLGNG+K+GL+SILLRDYN+HAAA CMNRL
Sbjct: 625  EHGFDETMCVNDGWVYFRNSELISGQLGKATLGNGNKDGLYSILLRDYNSHAAAVCMNRL 684

Query: 320  AKLSARWIGNHGFSIGIDDVQPGESLSCQKTDKINEGYSKCDEFIKAYNDGKLELLGGCD 141
            AKLSARWIG HGFSIGIDDVQPGE L+ ++ D I  GY +C   I+ +N G L+L  G D
Sbjct: 685  AKLSARWIGIHGFSIGIDDVQPGEELNKERKDSIQFGYDQCHRKIEEFNRGNLQLKAGLD 744

Query: 140  AAQTLEVRITGQLNTIRETTGDVCMAELHWRNSPLIMSQCGSKGSP 3
             A++LE  ITG LNTIRE TG  CM+ LHWRNSPLIMSQCGSKGSP
Sbjct: 745  GAKSLEAEITGILNTIREATGKACMSGLHWRNSPLIMSQCGSKGSP 790


>ref|XP_006279465.1| hypothetical protein CARUB_v10025743mg [Capsella rubella]
            gi|482548169|gb|EOA12363.1| hypothetical protein
            CARUB_v10025743mg [Capsella rubella]
          Length = 1376

 Score =  845 bits (2183), Expect = 0.0
 Identities = 425/586 (72%), Positives = 483/586 (82%), Gaps = 4/586 (0%)
 Frame = -1

Query: 1748 AVSHIKEQSRGSVNMVYMLTPAKVLSLFKKMLDEDCEVLYLADRPEKLIITSIAVPPTVI 1569
            A+SHIKE ++    + Y+L P  VL LFK M D+DCE+LY+A RPE LIIT + VPP  I
Sbjct: 206  AISHIKESTQAINPLTYVLDPNVVLGLFKGMSDKDCELLYIAHRPENLIITCMLVPPLSI 265

Query: 1568 RPSVLVGGTRSNENDITERLKRIIQANARVRTMLDGTNRSQTD---WEYLQIEVAQYINS 1398
            RPSV+VGG++SNEND++ RLK+IIQ NA +  +L     S  +   W+ +Q EVA+YINS
Sbjct: 266  RPSVMVGGSQSNENDLSARLKQIIQDNASLHRILSQPTTSAKNMQVWDTVQSEVAKYINS 325

Query: 1397 AEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAKRVEFTGRTVISPDPNLKITEVGVP 1218
              +GV     + +P+SG +QRLKGKQGRFR NLS KRVE+TGRTVISPDPNLKITEVG+P
Sbjct: 326  EVRGVQNQPDS-KPMSGILQRLKGKQGRFRANLSGKRVEYTGRTVISPDPNLKITEVGIP 384

Query: 1217 ILMAQTLTFPERVTSHNIEKLRQCVSNGSNKYPGAKFLTFPDGSKVSLMFPGRKRYADEL 1038
            ILMA+ LTFPE V+ HNIEKLRQCV NG NKYPGA+ + +PDGS  +L+   RKR ADEL
Sbjct: 385  ILMARILTFPECVSRHNIEKLRQCVRNGPNKYPGARNVRYPDGSSRALVGDYRKRIADEL 444

Query: 1037 KIGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRAKIMPWRTLRFNESVCNPYNADFDGDE 858
             IG IVDRHLE+GD VLFNRQPSLHRMSIM HRA+IMPWRTLRFNESVCNPYNADFDGDE
Sbjct: 445  AIGCIVDRHLEEGDAVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDE 504

Query: 857  MNMHVPQTEDARTEALTLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAF 678
            MNMHVPQTE+ARTEA+TLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAF
Sbjct: 505  MNMHVPQTEEARTEAITLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAF 564

Query: 677  SLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSVLVRPNASLRVYVNLTVTEKTFTK- 501
            SL+CSYMGDGMD +DLPTPT+ KPIELWTGKQ+FSVL+RPNAS+RVYV L V EK F K 
Sbjct: 565  SLICSYMGDGMDAIDLPTPTVLKPIELWTGKQIFSVLLRPNASVRVYVTLNVKEKNFKKG 624

Query: 500  SWKREKTMCPNDGFVYFRNSELISGQLGKATLGNGDKNGLFSILLRDYNAHAAASCMNRL 321
            +   ++TMC NDG+VYFRNSELISGQLGKATLGNG+K+GL+SILLRDYN+HAAA CMNRL
Sbjct: 625  NHGFDETMCTNDGWVYFRNSELISGQLGKATLGNGNKDGLYSILLRDYNSHAAAVCMNRL 684

Query: 320  AKLSARWIGNHGFSIGIDDVQPGESLSCQKTDKINEGYSKCDEFIKAYNDGKLELLGGCD 141
            AKLSARWIG HGFSIGIDDVQPGE LS Q+ D I  GY  C   I+ +N G L+L  G D
Sbjct: 685  AKLSARWIGIHGFSIGIDDVQPGEELSRQRKDAIQSGYDDCHSIIENFNRGNLQLKAGLD 744

Query: 140  AAQTLEVRITGQLNTIRETTGDVCMAELHWRNSPLIMSQCGSKGSP 3
             A+TLE  ITG LNTIRE TG  CM  LHWRNSPLIMSQCGSKGSP
Sbjct: 745  GAKTLEAGITGILNTIREDTGKACMDGLHWRNSPLIMSQCGSKGSP 790


>dbj|BAA96933.1| DNA-directed RNA polymerase II largest chain [Arabidopsis thaliana]
          Length = 1383

 Score =  841 bits (2172), Expect = 0.0
 Identities = 422/586 (72%), Positives = 480/586 (81%), Gaps = 4/586 (0%)
 Frame = -1

Query: 1748 AVSHIKEQSRGSVNMVYMLTPAKVLSLFKKMLDEDCEVLYLADRPEKLIITSIAVPPTVI 1569
            A+SH K+ +     + Y+L P  VL LFK+M D+DCE+LY+A RPE LIIT + VPP  I
Sbjct: 206  AISHTKQSTAAINPLTYVLDPNLVLGLFKRMSDKDCELLYIAYRPENLIITCMLVPPLSI 265

Query: 1568 RPSVLVGGTRSNENDITERLKRIIQANARVRTMLDGTNRSQTD---WEYLQIEVAQYINS 1398
            RPSV++GG +SNEND+T RLK+II  NA +  +L     S  +   W+ +QIEVA+YINS
Sbjct: 266  RPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQPTSSPKNMQVWDTVQIEVARYINS 325

Query: 1397 AEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAKRVEFTGRTVISPDPNLKITEVGVP 1218
              +G   +     PLSG +QRLKGK GRFR NLS KRVEFTGRTVISPDPNLKITEVG+P
Sbjct: 326  EVRGCQ-NQPEEHPLSGILQRLKGKGGRFRANLSGKRVEFTGRTVISPDPNLKITEVGIP 384

Query: 1217 ILMAQTLTFPERVTSHNIEKLRQCVSNGSNKYPGAKFLTFPDGSKVSLMFPGRKRYADEL 1038
            ILMAQ LTFPE V+ HNIEKLRQCV NG NKYPGA+ + +PDGS  +L+   RKR ADEL
Sbjct: 385  ILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGARNVRYPDGSSRTLVGDYRKRIADEL 444

Query: 1037 KIGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRAKIMPWRTLRFNESVCNPYNADFDGDE 858
             IG IVDRHL++GD+VLFNRQPSLHRMSIM HRA+IMPWRTLRFNESVCNPYNADFDGDE
Sbjct: 445  AIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDE 504

Query: 857  MNMHVPQTEDARTEALTLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAF 678
            MNMHVPQTE+ARTEA+TLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAF
Sbjct: 505  MNMHVPQTEEARTEAITLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAF 564

Query: 677  SLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSVLVRPNASLRVYVNLTVTEKTFTKS 498
            SL+CSYMGDGMD +DLPTPTI KPIELWTGKQ+FSVL+RPNAS+RVYV L V EK F K 
Sbjct: 565  SLICSYMGDGMDSIDLPTPTILKPIELWTGKQIFSVLLRPNASIRVYVTLNVKEKNFKKG 624

Query: 497  WKR-EKTMCPNDGFVYFRNSELISGQLGKATLGNGDKNGLFSILLRDYNAHAAASCMNRL 321
                ++TMC NDG+VYFRNSELISGQLGKATLGNG+K+GL+SILLRDYN+HAAA CMNRL
Sbjct: 625  EHGFDETMCINDGWVYFRNSELISGQLGKATLGNGNKDGLYSILLRDYNSHAAAVCMNRL 684

Query: 320  AKLSARWIGNHGFSIGIDDVQPGESLSCQKTDKINEGYSKCDEFIKAYNDGKLELLGGCD 141
            AKLSARWIG HGFSIGIDDVQPGE LS ++ D I  GY +C   I+ +N G L+L  G D
Sbjct: 685  AKLSARWIGIHGFSIGIDDVQPGEELSKERKDSIQFGYDQCHRKIEEFNRGNLQLKAGLD 744

Query: 140  AAQTLEVRITGQLNTIRETTGDVCMAELHWRNSPLIMSQCGSKGSP 3
             A++LE  ITG LNTIRE TG  CM+ LHWRNSPLIMSQCGSKGSP
Sbjct: 745  GAKSLEAEITGILNTIREATGKACMSGLHWRNSPLIMSQCGSKGSP 790


>ref|NP_200812.2| nuclear RNA polymerase C1 [Arabidopsis thaliana]
            gi|332009886|gb|AED97269.1| nuclear RNA polymerase C1
            [Arabidopsis thaliana]
          Length = 1376

 Score =  841 bits (2172), Expect = 0.0
 Identities = 422/586 (72%), Positives = 480/586 (81%), Gaps = 4/586 (0%)
 Frame = -1

Query: 1748 AVSHIKEQSRGSVNMVYMLTPAKVLSLFKKMLDEDCEVLYLADRPEKLIITSIAVPPTVI 1569
            A+SH K+ +     + Y+L P  VL LFK+M D+DCE+LY+A RPE LIIT + VPP  I
Sbjct: 206  AISHTKQSTAAINPLTYVLDPNLVLGLFKRMSDKDCELLYIAYRPENLIITCMLVPPLSI 265

Query: 1568 RPSVLVGGTRSNENDITERLKRIIQANARVRTMLDGTNRSQTD---WEYLQIEVAQYINS 1398
            RPSV++GG +SNEND+T RLK+II  NA +  +L     S  +   W+ +QIEVA+YINS
Sbjct: 266  RPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQPTSSPKNMQVWDTVQIEVARYINS 325

Query: 1397 AEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAKRVEFTGRTVISPDPNLKITEVGVP 1218
              +G   +     PLSG +QRLKGK GRFR NLS KRVEFTGRTVISPDPNLKITEVG+P
Sbjct: 326  EVRGCQ-NQPEEHPLSGILQRLKGKGGRFRANLSGKRVEFTGRTVISPDPNLKITEVGIP 384

Query: 1217 ILMAQTLTFPERVTSHNIEKLRQCVSNGSNKYPGAKFLTFPDGSKVSLMFPGRKRYADEL 1038
            ILMAQ LTFPE V+ HNIEKLRQCV NG NKYPGA+ + +PDGS  +L+   RKR ADEL
Sbjct: 385  ILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGARNVRYPDGSSRTLVGDYRKRIADEL 444

Query: 1037 KIGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRAKIMPWRTLRFNESVCNPYNADFDGDE 858
             IG IVDRHL++GD+VLFNRQPSLHRMSIM HRA+IMPWRTLRFNESVCNPYNADFDGDE
Sbjct: 445  AIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDE 504

Query: 857  MNMHVPQTEDARTEALTLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAF 678
            MNMHVPQTE+ARTEA+TLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAF
Sbjct: 505  MNMHVPQTEEARTEAITLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAF 564

Query: 677  SLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSVLVRPNASLRVYVNLTVTEKTFTKS 498
            SL+CSYMGDGMD +DLPTPTI KPIELWTGKQ+FSVL+RPNAS+RVYV L V EK F K 
Sbjct: 565  SLICSYMGDGMDSIDLPTPTILKPIELWTGKQIFSVLLRPNASIRVYVTLNVKEKNFKKG 624

Query: 497  WKR-EKTMCPNDGFVYFRNSELISGQLGKATLGNGDKNGLFSILLRDYNAHAAASCMNRL 321
                ++TMC NDG+VYFRNSELISGQLGKATLGNG+K+GL+SILLRDYN+HAAA CMNRL
Sbjct: 625  EHGFDETMCINDGWVYFRNSELISGQLGKATLGNGNKDGLYSILLRDYNSHAAAVCMNRL 684

Query: 320  AKLSARWIGNHGFSIGIDDVQPGESLSCQKTDKINEGYSKCDEFIKAYNDGKLELLGGCD 141
            AKLSARWIG HGFSIGIDDVQPGE LS ++ D I  GY +C   I+ +N G L+L  G D
Sbjct: 685  AKLSARWIGIHGFSIGIDDVQPGEELSKERKDSIQFGYDQCHRKIEEFNRGNLQLKAGLD 744

Query: 140  AAQTLEVRITGQLNTIRETTGDVCMAELHWRNSPLIMSQCGSKGSP 3
             A++LE  ITG LNTIRE TG  CM+ LHWRNSPLIMSQCGSKGSP
Sbjct: 745  GAKSLEAEITGILNTIREATGKACMSGLHWRNSPLIMSQCGSKGSP 790


>ref|XP_002531828.1| DNA-directed RNA polymerase III largest subunit, putative [Ricinus
            communis] gi|223528524|gb|EEF30548.1| DNA-directed RNA
            polymerase III largest subunit, putative [Ricinus
            communis]
          Length = 1383

 Score =  840 bits (2169), Expect = 0.0
 Identities = 434/593 (73%), Positives = 489/593 (82%), Gaps = 12/593 (2%)
 Frame = -1

Query: 1748 AVSHIKEQSRGSVNMV-YMLTPAKVLSLFKKMLDEDCEVLYLADRPEKLIITSIAVPPTV 1572
            A++H KE SR  +++  Y+LTP KVLSLFK++ +EDCEVL L DRPEKLIIT+IAVPP  
Sbjct: 176  AIAHTKE-SRAPISLATYILTPVKVLSLFKRIPEEDCEVLGLYDRPEKLIITNIAVPPIS 234

Query: 1571 IRPSVLVGGTRSNENDITERLKRIIQANARVRT-MLDG---TNRSQTDWEYLQIEVAQYI 1404
            IRPSV   G +SNENDITERLK+IIQANA +R  +L+G    N+    W+ LQ  VA Y+
Sbjct: 235  IRPSVFTDGLQSNENDITERLKQIIQANASLRMELLEGRMSVNKYLDSWDGLQAAVALYM 294

Query: 1403 NSAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAKRVEFTGRTVISPDPNLKITEVG 1224
            NS  + VP +++  +PLSGFVQRLKGKQGRFR NLS KRVEFTGRTVISPDPNLKITEV 
Sbjct: 295  NSDVR-VPNNVEVGKPLSGFVQRLKGKQGRFRGNLSGKRVEFTGRTVISPDPNLKITEVA 353

Query: 1223 VPILMAQTLTFPERVTSHNIEKLRQCVSNGSNKYPGAKFLTFPDGSKVSLMFPGRKRYAD 1044
            +PI MA+ L++PERV+ HNIEKLRQ VSNG  KYPGA  + +PDGS   L+   RK  A+
Sbjct: 354  IPIHMARILSYPERVSHHNIEKLRQLVSNGPQKYPGASTVRYPDGSSKRLIGSYRKTIAE 413

Query: 1043 ELKIGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRAKIMPWRTLRFNESVCNPYNADFDG 864
            EL  G IVDRHLEDGD+VLFNRQPSLHRMSIM HRA+IMPWRTLRFNESVCNPYNADFDG
Sbjct: 414  ELTFGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDG 473

Query: 863  DEMNMHVPQTEDARTEALTLMGV-QNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDR 687
            DEMNMHVPQTE+ARTEAL LMGV QNNLCTPKNGEILVASTQDFLTSSFLITR+DTFYDR
Sbjct: 474  DEMNMHVPQTEEARTEALLLMGVSQNNLCTPKNGEILVASTQDFLTSSFLITRRDTFYDR 533

Query: 686  AAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSVLVRPNASLRVYVNLTVTEKTF 507
            AAFSLMCSYM DGMD +DLPTP I KPIELWTGKQLFSVL+RPNA++RVYVNL V EK +
Sbjct: 534  AAFSLMCSYMNDGMDLIDLPTPAILKPIELWTGKQLFSVLLRPNANVRVYVNLIVREKIY 593

Query: 506  TKSWKREK----TMCPNDGFVYFRNSELISGQLGKATLGNGDKNGLFSILLRDYNAHAAA 339
            +K  K +K    TMCPNDGFVY RNSELISGQLGKATLGNG+K+GL+SILLRDYN HAAA
Sbjct: 594  SKPKKGDKREKETMCPNDGFVYIRNSELISGQLGKATLGNGNKDGLYSILLRDYNPHAAA 653

Query: 338  SCMNRLAKLS--ARWIGNHGFSIGIDDVQPGESLSCQKTDKINEGYSKCDEFIKAYNDGK 165
            +CMNRLAKL   ARWIGNHGFSIGIDDVQPG+ L   K   I+ GY +CD+ I+ YN+GK
Sbjct: 654  TCMNRLAKLRQVARWIGNHGFSIGIDDVQPGKKLIDGKGKTISNGYQQCDKLIEQYNEGK 713

Query: 164  LELLGGCDAAQTLEVRITGQLNTIRETTGDVCMAELHWRNSPLIMSQCGSKGS 6
            L L  GCDA QTLE  IT +LN +RE  GDVCM ELHWRNSPLIMSQCGSKGS
Sbjct: 714  LLLKPGCDATQTLESEITEKLNKLREEAGDVCMKELHWRNSPLIMSQCGSKGS 766


>ref|XP_004294640.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
            [Fragaria vesca subsp. vesca]
          Length = 1390

 Score =  837 bits (2161), Expect = 0.0
 Identities = 425/591 (71%), Positives = 487/591 (82%), Gaps = 10/591 (1%)
 Frame = -1

Query: 1748 AVSHIKEQSRGSVNMV-YMLTPAKVLSLFKKMLDEDCEVLYLADRPEKLIITSIAVPPTV 1572
            +V+ + +  + S+N+  +ML P KV SLFK+MLDEDCE+L L  RPE LI+T+IAVPP  
Sbjct: 198  SVNPVMKDPKASINLQPHMLNPVKVFSLFKRMLDEDCELLNLKSRPENLIMTTIAVPPIA 257

Query: 1571 IRPSVLVGGTRSNENDITERLKRIIQANARVRTMLD--GTNRSQTDWEYLQIEVAQYINS 1398
            IRPSVLV G++SNENDITERLK+IIQ NA V+  L    T R  ++WE LQ EVA YINS
Sbjct: 258  IRPSVLVDGSQSNENDITERLKKIIQTNACVQQDLSEGSTTRFLSNWEILQAEVALYINS 317

Query: 1397 AEKGVPAHMQA-PRPLSGFVQRLKGKQGRFRQNLSAKRVEFTGRTVISPDPNLKITEVGV 1221
              +GVP HM A  +PL+G VQRLKGK GRFR NL  KRVE+TGRTVISPDPNLKITEVG+
Sbjct: 318  DVRGVPYHMTANAKPLNGLVQRLKGKTGRFRGNLCGKRVEYTGRTVISPDPNLKITEVGI 377

Query: 1220 PILMAQTLTFPERVTSHNIEKLRQCVSNGSNKYPGAKFLTFPDGSKVSLMFPGRKR--YA 1047
            PI MAQ L++PERV+ HNIEKLR+CV+NG  KYPGA  L   +G + SL   G+KR  +A
Sbjct: 378  PIQMAQILSYPERVSDHNIEKLRRCVANGPFKYPGALVLKCQNGEEWSLK-AGQKRMSHA 436

Query: 1046 DELKIGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRAKIMPWRTLRFNESVCNPYNADFD 867
            D LK G IVDRHLEDGDIVLFNRQPSLHRMSIM HRA+IMPWRTLRFNESVCNPYNADFD
Sbjct: 437  DNLKPGDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFD 496

Query: 866  GDEMNMHVPQTEDARTEALTLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDR 687
            GDEMNMHVPQTE+ARTEA+ LMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDR
Sbjct: 497  GDEMNMHVPQTEEARTEAVMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDR 556

Query: 686  AAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSVLVRPNASLRVYVNLTVTEKTF 507
            A+FSLMCSYMGDG +HVDLPTP + KPIELWTGKQL+SVLVRPN+++RVY+NLTV EK++
Sbjct: 557  ASFSLMCSYMGDGTEHVDLPTPAVVKPIELWTGKQLYSVLVRPNSNVRVYLNLTVREKSY 616

Query: 506  ----TKSWKREKTMCPNDGFVYFRNSELISGQLGKATLGNGDKNGLFSILLRDYNAHAAA 339
                T+  +  + MCPNDGFVYFRNSEL+SGQLGK TLGNG+K+GLFS+LLRDY AHAAA
Sbjct: 617  SNRKTEDGREIEAMCPNDGFVYFRNSELLSGQLGKGTLGNGNKDGLFSVLLRDYKAHAAA 676

Query: 338  SCMNRLAKLSARWIGNHGFSIGIDDVQPGESLSCQKTDKINEGYSKCDEFIKAYNDGKLE 159
            SCMNR+AKLSARWIGNHGFSIGI DVQP + L  +K   I +GY KCD+ IK Y +G+L 
Sbjct: 677  SCMNRVAKLSARWIGNHGFSIGISDVQPSDILYGEKEKIIKKGYDKCDDQIKLYKEGQLR 736

Query: 158  LLGGCDAAQTLEVRITGQLNTIRETTGDVCMAELHWRNSPLIMSQCGSKGS 6
            L  GCDAAQ+LE  IT  LN IR+ TG +CM  LHWRNSPLIMSQCGSKGS
Sbjct: 737  LAPGCDAAQSLESGITAVLNDIRDQTGKLCMQTLHWRNSPLIMSQCGSKGS 787