BLASTX nr result
ID: Paeonia25_contig00012974
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Paeonia25_contig00012974
(2538 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI29879.3| unnamed protein product [Vitis vinifera] 830 0.0
ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I sub... 830 0.0
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni... 768 0.0
ref|XP_007203063.1| hypothetical protein PRUPE_ppa000153mg [Prun... 758 0.0
ref|XP_007028855.1| Nuclear RNA polymerase A1 isoform 3 [Theobro... 755 0.0
ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Me... 751 0.0
ref|XP_007028856.1| Nuclear RNA polymerase A1 isoform 4 [Theobro... 751 0.0
ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform ... 751 0.0
ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citr... 747 0.0
ref|XP_007145632.1| hypothetical protein PHAVU_007G255400g [Phas... 745 0.0
ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I sub... 744 0.0
ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I sub... 739 0.0
ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 739 0.0
ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I sub... 736 0.0
ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I sub... 736 0.0
ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I sub... 733 0.0
ref|XP_007028853.1| Nuclear RNA polymerase A1, putative isoform ... 726 0.0
ref|XP_004299740.1| PREDICTED: DNA-directed RNA polymerase I sub... 725 0.0
ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I sub... 721 0.0
ref|NP_191325.1| nuclear RNA polymerase A1 [Arabidopsis thaliana... 719 0.0
>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
Length = 1669
Score = 830 bits (2144), Expect = 0.0
Identities = 472/846 (55%), Positives = 567/846 (67%), Gaps = 22/846 (2%)
Frame = +3
Query: 3 TSSTGSFSCKPGQKVCLV-SEDEMQTLQPAILKPEPLWTGKQVITAVLNHITKGHPPFTV 179
+S +GSF KPG+KV ++ SEDEMQ L PAI KPEPLW+GKQVITAVLNHIT+G PFT
Sbjct: 673 SSGSGSFIGKPGKKVSVLDSEDEMQPLLPAIWKPEPLWSGKQVITAVLNHITRGRKPFTT 732
Query: 180 EKEGKIPREYFGSNT-------GEDDLSVERKTSXXXXXXXXXXXXXILYVSKNDLVRGV 338
EK+GKIPREYFGS G+D S RK L + KN+LVRGV
Sbjct: 733 EKDGKIPREYFGSEIDEKKSGKGKDPGSDRRKEKRIEKKHGEYK----LLIHKNELVRGV 788
Query: 339 IDKAQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYRDIE 518
IDKAQF YGLVH VQELYG TAGILLS SRLFTVFLQMHGFTCGVDDLLI DI
Sbjct: 789 IDKAQFDKYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDDLLISPNYDIA 848
Query: 519 RKQELEKCQDFGXXXXXXXXXXXXXRKDIRNVYSKFLGIKYDEIDPKELPNEIEYGICRY 698
RK EL+K ++ G V+ KF+G + +IDP +L E+E I
Sbjct: 849 RKIELDKSENIGEL-----------------VHCKFIGSNHGKIDPVKLQVEVEKIILSN 891
Query: 699 GEVGTTSLDNEMRKHLSNASTEVNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVNFQQVS 878
GE T LD M+ L+ +++VNKDL +KGL+KPFPKNC SLMTTTGAKG VNF Q+S
Sbjct: 892 GEAAITRLDRMMKNELNELTSKVNKDLLLKGLVKPFPKNCLSLMTTTGAKGSTVNFSQIS 951
Query: 879 SLLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHCMAGRE 1058
S LGQQDLEGKRVPRMVSGKTLP F PWD + RAGGFISD FLTGLHPQEYYFHCMAGRE
Sbjct: 952 SFLGQQDLEGKRVPRMVSGKTLPCFPPWDCAARAGGFISDRFLTGLHPQEYYFHCMAGRE 1011
Query: 1059 GLVDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQTSFIS 1238
GLVDTAVKTSRSGYLQRCLIKNLECLKVCYD+TVRD+DGSI+QF+YG+DGVDVHQTSFI+
Sbjct: 1012 GLVDTAVKTSRSGYLQRCLIKNLECLKVCYDYTVRDSDGSIVQFNYGDDGVDVHQTSFIT 1071
Query: 1239 KFKALEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVPEKKKHIDD----ED 1406
+F+AL N +++ EKF K N YI+ LP +L KK ++FI+G E+++ D+ +D
Sbjct: 1072 EFEALAVNEEVVCEKFGQD-GKFNGYIQKLPKELRKKTKKFIEGFMEERQDFDNMKKQKD 1130
Query: 1407 FMKLMNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1586
F+ L+ KY SSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGE+NVTLGIPRLQEI
Sbjct: 1131 FVNLVKQKYISSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQEI 1190
Query: 1587 LMTASVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYVGL-----RHHLY 1751
LMTA+ +IKTPIMTCPL +S D+ A+ LA LKKVTV DITE++ V + + H
Sbjct: 1191 LMTAANDIKTPIMTCPLQMGRSKDD-AERLAAKLKKVTVADITESMEVSIVPFTVQDHQT 1249
Query: 1752 SRVYTLVMNLYRPA---SNSGISLKDYKETLTIQFVRELEDAIHNQINAIKRMHGIQAFD 1922
+Y L M LY PA ++GISL+D +ETL FVRELEDAI N + + ++ GI+ F
Sbjct: 1250 CSIYKLKMKLYEPALYPPHTGISLEDCEETLEAVFVRELEDAIQNHLLLLSKISGIKNFL 1309
Query: 1923 QLSQSKASKETDEEVS--GMRGEENDDDGDVSXXXXXXXXXXXXQKRKRQSTDEVDYDDA 2096
S+S ASKETDE+ S G+ G D+D D QKRK+Q++DE+DY D
Sbjct: 1310 PDSRSMASKETDEDASGDGLAGGNGDEDDDGEDDGGAEDLGLDAQKRKQQASDEMDYGD- 1368
Query: 2097 SEDEPNEGVLSTGFEQEKENGNCLDTEMDGDDVSRNSQDAEMDGDDDASNLPSESQSPXX 2276
SE EP+EG S G +E +D D ++S N + D D+ S +PS+S+S
Sbjct: 1369 SEGEPDEGEPSAGLTEE------IDLVEDEVEISNNEEVGISDPKDEDSKVPSKSKS--- 1419
Query: 2277 XXXXXXXXXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXDEDPHILLQQVALN 2456
+ +KD DR+I V +PHILL Q+A
Sbjct: 1420 -SKNKKAKTEAKRKKRFRAIKKDFDRAILV---KAKGTYFEVHFRFTNEPHILLAQIAQK 1475
Query: 2457 VAKKVY 2474
A KVY
Sbjct: 1476 AANKVY 1481
>ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
vinifera]
Length = 1740
Score = 830 bits (2144), Expect = 0.0
Identities = 472/846 (55%), Positives = 567/846 (67%), Gaps = 22/846 (2%)
Frame = +3
Query: 3 TSSTGSFSCKPGQKVCLV-SEDEMQTLQPAILKPEPLWTGKQVITAVLNHITKGHPPFTV 179
+S +GSF KPG+KV ++ SEDEMQ L PAI KPEPLW+GKQVITAVLNHIT+G PFT
Sbjct: 744 SSGSGSFIGKPGKKVSVLDSEDEMQPLLPAIWKPEPLWSGKQVITAVLNHITRGRKPFTT 803
Query: 180 EKEGKIPREYFGSNT-------GEDDLSVERKTSXXXXXXXXXXXXXILYVSKNDLVRGV 338
EK+GKIPREYFGS G+D S RK L + KN+LVRGV
Sbjct: 804 EKDGKIPREYFGSEIDEKKSGKGKDPGSDRRKEKRIEKKHGEYK----LLIHKNELVRGV 859
Query: 339 IDKAQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYRDIE 518
IDKAQF YGLVH VQELYG TAGILLS SRLFTVFLQMHGFTCGVDDLLI DI
Sbjct: 860 IDKAQFDKYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDDLLISPNYDIA 919
Query: 519 RKQELEKCQDFGXXXXXXXXXXXXXRKDIRNVYSKFLGIKYDEIDPKELPNEIEYGICRY 698
RK EL+K ++ G V+ KF+G + +IDP +L E+E I
Sbjct: 920 RKIELDKSENIGEL-----------------VHCKFIGSNHGKIDPVKLQVEVEKIILSN 962
Query: 699 GEVGTTSLDNEMRKHLSNASTEVNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVNFQQVS 878
GE T LD M+ L+ +++VNKDL +KGL+KPFPKNC SLMTTTGAKG VNF Q+S
Sbjct: 963 GEAAITRLDRMMKNELNELTSKVNKDLLLKGLVKPFPKNCLSLMTTTGAKGSTVNFSQIS 1022
Query: 879 SLLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHCMAGRE 1058
S LGQQDLEGKRVPRMVSGKTLP F PWD + RAGGFISD FLTGLHPQEYYFHCMAGRE
Sbjct: 1023 SFLGQQDLEGKRVPRMVSGKTLPCFPPWDCAARAGGFISDRFLTGLHPQEYYFHCMAGRE 1082
Query: 1059 GLVDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQTSFIS 1238
GLVDTAVKTSRSGYLQRCLIKNLECLKVCYD+TVRD+DGSI+QF+YG+DGVDVHQTSFI+
Sbjct: 1083 GLVDTAVKTSRSGYLQRCLIKNLECLKVCYDYTVRDSDGSIVQFNYGDDGVDVHQTSFIT 1142
Query: 1239 KFKALEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVPEKKKHIDD----ED 1406
+F+AL N +++ EKF K N YI+ LP +L KK ++FI+G E+++ D+ +D
Sbjct: 1143 EFEALAVNEEVVCEKFGQD-GKFNGYIQKLPKELRKKTKKFIEGFMEERQDFDNMKKQKD 1201
Query: 1407 FMKLMNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1586
F+ L+ KY SSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGE+NVTLGIPRLQEI
Sbjct: 1202 FVNLVKQKYISSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQEI 1261
Query: 1587 LMTASVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYVGL-----RHHLY 1751
LMTA+ +IKTPIMTCPL +S D+ A+ LA LKKVTV DITE++ V + + H
Sbjct: 1262 LMTAANDIKTPIMTCPLQMGRSKDD-AERLAAKLKKVTVADITESMEVSIVPFTVQDHQT 1320
Query: 1752 SRVYTLVMNLYRPA---SNSGISLKDYKETLTIQFVRELEDAIHNQINAIKRMHGIQAFD 1922
+Y L M LY PA ++GISL+D +ETL FVRELEDAI N + + ++ GI+ F
Sbjct: 1321 CSIYKLKMKLYEPALYPPHTGISLEDCEETLEAVFVRELEDAIQNHLLLLSKISGIKNFL 1380
Query: 1923 QLSQSKASKETDEEVS--GMRGEENDDDGDVSXXXXXXXXXXXXQKRKRQSTDEVDYDDA 2096
S+S ASKETDE+ S G+ G D+D D QKRK+Q++DE+DY D
Sbjct: 1381 PDSRSMASKETDEDASGDGLAGGNGDEDDDGEDDGGAEDLGLDAQKRKQQASDEMDYGD- 1439
Query: 2097 SEDEPNEGVLSTGFEQEKENGNCLDTEMDGDDVSRNSQDAEMDGDDDASNLPSESQSPXX 2276
SE EP+EG S G +E +D D ++S N + D D+ S +PS+S+S
Sbjct: 1440 SEGEPDEGEPSAGLTEE------IDLVEDEVEISNNEEVGISDPKDEDSKVPSKSKS--- 1490
Query: 2277 XXXXXXXXXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXDEDPHILLQQVALN 2456
+ +KD DR+I V +PHILL Q+A
Sbjct: 1491 -SKNKKAKTEAKRKKRFRAIKKDFDRAILV---KAKGTYFEVHFRFTNEPHILLAQIAQK 1546
Query: 2457 VAKKVY 2474
A KVY
Sbjct: 1547 AANKVY 1552
>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
polymerase I largest subunit, putative [Ricinus communis]
Length = 1686
Score = 768 bits (1982), Expect = 0.0
Identities = 450/851 (52%), Positives = 540/851 (63%), Gaps = 25/851 (2%)
Frame = +3
Query: 3 TSSTGSFSCKPGQKVCLV-SEDEMQTLQPAILKPEPLWTGKQVITAVLNHITKGHPPFTV 179
T SF +PGQKV SEDE+QTL PAI KP+PLWTGKQVITA+LNHIT HPPFTV
Sbjct: 674 TVGPNSFHGRPGQKVLWSRSEDEIQTLPPAIWKPKPLWTGKQVITAILNHITSDHPPFTV 733
Query: 180 EKEGKIPREYFGSNTGEDDLSVERKTSXXXXXXXXXXXXXILYVSKNDLVRGVIDKAQFG 359
EK+ KIP +F S ED E K+ +L V KN+LVRGVIDK QFG
Sbjct: 734 EKDAKIPSNFFKSRANEDKPCQEEKSDKDAPAEKEPDEEKML-VYKNELVRGVIDKGQFG 792
Query: 360 SYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYRDIERKQELEK 539
YGLVHTV EL G TAGILLS SRLFT +LQMHGFTCGVDDLLIL +D ERK++LE
Sbjct: 793 EYGLVHTVHELLGSHTAGILLSVLSRLFTAYLQMHGFTCGVDDLLILTNKDEERKKQLEW 852
Query: 540 CQDFGXXXXXXXXXXXXXRKDIRNVYSKFLGIKYDEI--DPKELPNEIEYGICRYGEVGT 713
C+ G V+ F+GIK ++I DP + IE I G+
Sbjct: 853 CEKSGEA-----------------VHRNFIGIKDEKIKIDPVAMQLNIEKTIRSDGDSAL 895
Query: 714 TSLDNEMRKHLSN-ASTEVNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVNFQQVSSLLG 890
LD +M L+ S+ V +L GLLKP KNC SLMTT+GAKG VNFQQ+SS LG
Sbjct: 896 AYLDRQMSNELNTKTSSGVISNLLSDGLLKPSGKNCISLMTTSGAKGSKVNFQQISSFLG 955
Query: 891 QQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHCMAGREGLVD 1070
QQ+LEGKRVPRMVSGKTLP F PWDW+ R+GG+I+D FLTGL PQEYYFHCMAGREGLVD
Sbjct: 956 QQELEGKRVPRMVSGKTLPCFHPWDWAARSGGYITDRFLTGLRPQEYYFHCMAGREGLVD 1015
Query: 1071 TAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQTSFISKFKA 1250
TAVKTSRSGYLQRCLIKNLECLK+ YDHTVRDADGS++QF YGEDGVDVHQTSFI+KFK
Sbjct: 1016 TAVKTSRSGYLQRCLIKNLECLKIGYDHTVRDADGSVVQFYYGEDGVDVHQTSFIAKFKE 1075
Query: 1251 LEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVP----EKKKHIDDEDFMKL 1418
L N ++ ++ L NSYI LP L++KA F+ + ED L
Sbjct: 1076 LALNQDMIYKRSGGQLGAFNSYISELPEALKEKADRFLDDFSIMGRIASNLVKREDLYNL 1135
Query: 1419 MNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA 1598
M K+ SLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA
Sbjct: 1136 MKQKFLLSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA 1195
Query: 1599 SVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYV-----GLRHHLYSRVY 1763
S++IKTPIMTCP L+E T+E A LA L+KVTV DI E++ V ++ R+Y
Sbjct: 1196 SIDIKTPIMTCP-LQEGRTNEDADHLADKLRKVTVADIVESMEVSVVPFAIQDGGVCRIY 1254
Query: 1764 TLVMNLYRPA---SNSGISLKDYKETLTIQFVRELEDAIHNQINAIKRMHGIQAFDQLSQ 1934
L M LYRPA + IS++D++ETL + F+RELEDAI N + + R+ GI+ F S+
Sbjct: 1255 KLKMKLYRPAHYPQYANISVEDWEETLEVVFLRELEDAIQNHMFLLSRISGIKDFLPESR 1314
Query: 1935 SKASKETDEEVSG--MRGEENDDDGDVSXXXXXXXXXXXXQKRKRQSTDEVDYDDASEDE 2108
S+AS E DE+V+G EE DDD D QKRK Q+TDE+DYDD E+E
Sbjct: 1315 SRASGEADEDVAGDMSHREERDDDNDDDDGERADDLGLDAQKRKLQATDEMDYDDGFEEE 1374
Query: 2109 PNEGVLS-----TGFEQEKENGNCLDTEMDGDDVSRN--SQDAEMDGDDDASNLPSESQS 2267
NEG + +GFE E + G+ +TE+ D + N S+ + + ++S
Sbjct: 1375 LNEGESTASEEESGFESEIDQGD-NETEISNDVMLDNEASETLPLRKPSKPKSKKKAAES 1433
Query: 2268 PXXXXXXXXXXXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXDEDPHILLQQV 2447
P ++S KD DR+I V +PHILL ++
Sbjct: 1434 PSHGEKSKDKKKKPKAKRKSRIS-KDFDRAIFV---EARKMHFEVHFKFTNEPHILLAEI 1489
Query: 2448 ALNVAKKVYYQ 2480
A AKKVY Q
Sbjct: 1490 AQKTAKKVYIQ 1500
>ref|XP_007203063.1| hypothetical protein PRUPE_ppa000153mg [Prunus persica]
gi|462398594|gb|EMJ04262.1| hypothetical protein
PRUPE_ppa000153mg [Prunus persica]
Length = 1612
Score = 758 bits (1956), Expect = 0.0
Identities = 441/859 (51%), Positives = 538/859 (62%), Gaps = 38/859 (4%)
Frame = +3
Query: 18 SFSCKPGQKVCLV-SEDEMQTLQPAILKPEPLWTGKQVITAVLNHITKGHPPFTVEKEGK 194
+FS KP +KV + SE MQ L PAI KPEPLWTGKQVITA+LNHIT+G PP TVE++ K
Sbjct: 589 AFSGKPDKKVFMFNSEGTMQPLLPAIWKPEPLWTGKQVITALLNHITRGSPPVTVERDAK 648
Query: 195 IPREYFGSNT--GEDDL-----------SVERKTSXXXXXXXXXXXXXILYVSKNDLVRG 335
IPR +F GED S E+ T L + +N+LVRG
Sbjct: 649 IPRGFFNCKNVEGEDKSGNDGQQKKRKPSKEQATDKDSSKEKEEPDENHLLIYRNNLVRG 708
Query: 336 VIDKAQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYRDI 515
VIDKAQFG YGLVHTVQE YG TAG LLS S LFTV+LQMHGFTCG+DDLL+L+ +D
Sbjct: 709 VIDKAQFGDYGLVHTVQEFYGSDTAGKLLSVLSHLFTVYLQMHGFTCGIDDLLLLESKDA 768
Query: 516 ERKQELEKCQDFGXXXXXXXXXXXXXRKDIRNVYSKFLGIK-YDEIDPKELPNEIEYGIC 692
+ K +LE C+D G NVY F+ +K DP EL IE I
Sbjct: 769 KMKDQLESCEDVG-----------------ENVYRDFIEVKDVKRKDPVELQLNIENFIR 811
Query: 693 RYGEVGTTSLDNEMRKHLSN--ASTEVNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVNF 866
GE SLD M L+N ++++V K L ++GL KP KNC LMTT+GAKG + N
Sbjct: 812 SNGESALASLDRRMISQLNNKTSNSDVFKQLLLRGLSKPSVKNCIYLMTTSGAKGSVANL 871
Query: 867 QQVSSLLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHCM 1046
QQ++S LGQQ+LEGKRVP+M+SGKTLP F PWDWS RAGGFI D FLTGLHPQEYYFHCM
Sbjct: 872 QQITSYLGQQELEGKRVPQMISGKTLPCFPPWDWSSRAGGFIIDRFLTGLHPQEYYFHCM 931
Query: 1047 AGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQT 1226
AGREGLVDTAVKTSRSGYLQRC+IKNLECLKV YD+TVRDADGSIIQF YGEDG+DVH T
Sbjct: 932 AGREGLVDTAVKTSRSGYLQRCIIKNLECLKVSYDNTVRDADGSIIQFRYGEDGIDVHMT 991
Query: 1227 SFISKFKALEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVPEKKK-HIDDE 1403
SFI KF++L N ++ +K +DK N YI+ LP L++KA +F+ + K+K H E
Sbjct: 992 SFIQKFESLIANKEMFHKKGRRQMDKLNPYIKDLPLALKEKAEKFVHNLALKEKDHNFQE 1051
Query: 1404 DFMKLMNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQE 1583
DF+KLM HKY SLAQPGEPVGVLA QSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQE
Sbjct: 1052 DFLKLMEHKYLCSLAQPGEPVGVLAGQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQE 1111
Query: 1584 ILMTASVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYVG-----LRHHL 1748
ILMTA+ +IKTP+MTCPL K +S +E A+ LA LKK+TV DI E++ V ++
Sbjct: 1112 ILMTAANDIKTPVMTCPLQKGRSKEE-AQELADKLKKITVADIIESMKVTFVPFFIQDGQ 1170
Query: 1749 YSRVYTLVMNLYRPASNSGI---SLKDYKETLTIQFVRELEDAIHNQINAIKRMHGIQAF 1919
R+Y L M L+ P I S +D++E L I FVRELEDAI N I + ++ GI+ F
Sbjct: 1171 TCRIYKLEMTLHVPEHLRTIIEYSSEDWEEILEIVFVRELEDAIQNHILLLSKISGIKNF 1230
Query: 1920 DQLSQSKASKETDE---EVSGMRGEENDDDG---DVSXXXXXXXXXXXXQKRKRQSTDEV 2081
SQ KAS ETDE E R EE+DD+G D KRK Q+TDE+
Sbjct: 1231 TPDSQPKASNETDENLPEKRSQREEEDDDNGGADDGEHGEGVEDFGLDAHKRKLQATDEM 1290
Query: 2082 DYDDASEDEPNEGVLSTGFEQEKENGNCLDTEMDGDDVSRNSQDAEMDGDDDASNLPSE- 2258
DY+D +DE E LS G E E +D E + ++ ++ + +D +D+ P E
Sbjct: 1291 DYEDGCDDEVREADLSDGDESE------IDEEENEVEIGKDGEIGVIDANDEMPGSPLEE 1344
Query: 2259 -----SQSPXXXXXXXXXXXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXDED 2423
++ +K+ DR+I V D +
Sbjct: 1345 AGDLAKPKSKEKKTKSGSQIRKKRKVRAEMVKKETDRAIFV--SAKGFHFEVHFRFADNE 1402
Query: 2424 PHILLQQVALNVAKKVYYQ 2480
PHILL Q+A A+KVY Q
Sbjct: 1403 PHILLSQIAQKTAQKVYIQ 1421
>ref|XP_007028855.1| Nuclear RNA polymerase A1 isoform 3 [Theobroma cacao]
gi|508717460|gb|EOY09357.1| Nuclear RNA polymerase A1
isoform 3 [Theobroma cacao]
Length = 1400
Score = 755 bits (1950), Expect = 0.0
Identities = 437/852 (51%), Positives = 538/852 (63%), Gaps = 31/852 (3%)
Frame = +3
Query: 18 SFSCKPGQKVCL-VSEDEMQTLQPAILKPEPLWTGKQVITAVLNHITKGHPPFTVEKEGK 194
SFS KPGQKV + SE+ M + PAILKP+PLWTGKQVI++VL+HIT+G PPFTV K K
Sbjct: 394 SFSGKPGQKVFVSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSHITRGRPPFTVGKTAK 453
Query: 195 IPREYFGSNTGEDDLSVE---------RKTSXXXXXXXXXXXXXILYVSKNDLVRGVIDK 347
IPR++F + ++ S +K + + +NDLVRGVIDK
Sbjct: 454 IPRDFFRNRRNKNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEKILIYRNDLVRGVIDK 513
Query: 348 AQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYRDIERKQ 527
AQF YGLVHTVQELYG TAGILLS FSRLFTVFLQMHGFTCGVDDLLI++ +DIERK+
Sbjct: 514 AQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGVDDLLIMEDKDIERKK 573
Query: 528 ELEKCQDFGXXXXXXXXXXXXXRKDIRNVYSKFLGIKYD-EIDPKELPNEIEYGICRYGE 704
+LE C+ K + + + G+K + E P EL EIE I R GE
Sbjct: 574 QLEDCE-----------------KKVTEAHYELFGVKVNSETAPTELQLEIERTIRRDGE 616
Query: 705 VGTTSLDNEMRKHLS-NASTEVNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVNFQQVSS 881
T+LD +M L+ N+S V +L +GL+K +NC SLMTT+GAKG VNFQQ+SS
Sbjct: 617 TALTALDRKMISVLNENSSKGVLTELLSEGLVKSMGENCISLMTTSGAKGSKVNFQQISS 676
Query: 882 LLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHCMAGREG 1061
LGQQ+LEGKRVPRMVSGKTLP F PWDW+ RAGGFISD FL+GL PQEYYFHCMAGREG
Sbjct: 677 FLGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFLSGLRPQEYYFHCMAGREG 736
Query: 1062 LVDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQTSFISK 1241
LVDTAVKTSRSGYLQRCLIKNLECLK+ YDHTVRDADGSI+QF YGEDG+DVHQTSFI+K
Sbjct: 737 LVDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQFIYGEDGIDVHQTSFIAK 796
Query: 1242 FKALEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVPEKKKH--IDDEDFMK 1415
F+AL N ++ EK L + + + LP L KA +FI+ +K +H I +DF+
Sbjct: 797 FEALALNQDMMSEKLCSQLGEPDDSDKILPDGLRSKAEQFIREEIKKYQHQKIKPKDFLN 856
Query: 1416 LMNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMT 1595
L+ K+ SSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMT
Sbjct: 857 LLKLKFLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMT 916
Query: 1596 ASVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYVGLRHHLYSR-----V 1760
AS++I+TP+MTCPL K K T E A LA +KK+TV DI E++ V + +
Sbjct: 917 ASIDIRTPVMTCPLHKGK-TKEDALCLANKMKKITVADILESMEVSVAPFAVDNGDICSI 975
Query: 1761 YTLVMNLYRP---ASNSGISLKDYKETLTIQFVRELEDAIHNQINAIKRMHGIQAFDQLS 1931
Y L M L +P NS I++KD + L + F+RELEDAI N + + ++ GI+ F S
Sbjct: 976 YKLKMMLGKPDKYFENSDITVKDCEHILKVVFLRELEDAIQNHLVLLSKISGIKKFMPDS 1035
Query: 1932 QSKASKETDEEVSGMRGEE-----NDDDGDVSXXXXXXXXXXXXQKRKRQSTDEVDYDDA 2096
Q AS E DE+VS R E +DDD D QK+K+Q+TDE+DY+D
Sbjct: 1036 QRNASNEMDEDVSEGRSRETKNDDDDDDDDADDEERAEDLGLDAQKQKQQTTDEMDYEDD 1095
Query: 2097 SEDEPNEGVLSTGFEQE----KENGNCLDTEMDGDDVSRNSQDAEMDGDDDASNLPSESQ 2264
SE E NEG E E ++ + M G D ++ ++ SN S +
Sbjct: 1096 SEVEQNEGASLAALESEIDMSEDETGTIQINMIGSDNGKDEISQSSPNLENRSNPKSREE 1155
Query: 2265 SPXXXXXXXXXXXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXDEDPHILLQQ 2444
+ RK++DR+I +PHILL Q
Sbjct: 1156 K--------TGSEPKRKKMKAKFVRKESDRAI---FNAIRGLCFEVHFKLKNEPHILLAQ 1204
Query: 2445 VALNVAKKVYYQ 2480
+A AKKVY Q
Sbjct: 1205 IAEKTAKKVYIQ 1216
>ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
gi|355509045|gb|AES90187.1| DNA-directed RNA polymerase
subunit beta [Medicago truncatula]
Length = 1628
Score = 751 bits (1940), Expect = 0.0
Identities = 432/839 (51%), Positives = 536/839 (63%), Gaps = 17/839 (2%)
Frame = +3
Query: 15 GSFSCKPGQKVCLV-SEDEMQTLQPAILKPEPLWTGKQVITAVLNHITKGHPPFTVEKEG 191
GSFSCKPGQKV + SE EM PAI KPEPLWTGKQVI+A+L +ITKG PPFTVEK
Sbjct: 650 GSFSCKPGQKVLMSNSESEMFLFPPAIFKPEPLWTGKQVISALLCYITKGRPPFTVEKNA 709
Query: 192 KIPREYFGSNTGEDDLSVERKTSXXXXXXXXXXXXXILYVSKNDLVRGVIDKAQFGSYGL 371
KIP +F + TGE +++ T ++Y +NDLVRGV+DKAQFG YG+
Sbjct: 710 KIPSSFFKTQTGE----IKKHTKDTSRKKDELEDKLLIY--RNDLVRGVVDKAQFGDYGM 763
Query: 372 VHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYRDIERKQELEKCQDF 551
VHTVQE YG TAGILLSA SRLFT FLQMHGFTCGVDDLLI +D ER +LE C++
Sbjct: 764 VHTVQEFYGSNTAGILLSALSRLFTNFLQMHGFTCGVDDLLIKVGKDSERLNQLESCEEI 823
Query: 552 GXXXXXXXXXXXXXRKDIRNVYSKFLGIKYDE-IDPKELPNEIEYGICRYGEVGTTSLDN 728
G DI V+ +F+G+ E IDP + +E I GE T LD
Sbjct: 824 G---------------DI--VHREFIGVMESENIDPITMQLNVEKKIRSNGEAAITYLDR 866
Query: 729 EMRKHL-SNASTEVNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVNFQQVSSLLGQQDLE 905
+M +L S S+ V K+L KG LKP KN SLMTT+GAKG MVNFQQ+SS LGQQ+LE
Sbjct: 867 KMISNLNSRTSSGVLKELLSKGSLKPSGKNWISLMTTSGAKGSMVNFQQISSHLGQQELE 926
Query: 906 GKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHCMAGREGLVDTAVKT 1085
GKRVPRMVSGKTLP F WD SPRAGGFI D FLT L PQEYYFHCMAGREGLVDTAVKT
Sbjct: 927 GKRVPRMVSGKTLPCFPSWDCSPRAGGFIIDRFLTALRPQEYYFHCMAGREGLVDTAVKT 986
Query: 1086 SRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQTSFISKFKALEENH 1265
SRSGYLQRCL+KNLE LKVCYDHTVRD+DGSIIQF YGEDGVDVHQTSFI+KF+AL N
Sbjct: 987 SRSGYLQRCLMKNLESLKVCYDHTVRDSDGSIIQFHYGEDGVDVHQTSFINKFEALSINK 1046
Query: 1266 QILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVPEKKKH---IDDEDFMKLMNHKYF 1436
+++ LD+S+ YI LP L+ KA FI+ K+++ + + DF+++M HKY
Sbjct: 1047 ELIYSNCCRQLDRSSPYINKLPDALKGKAENFIRDFSSKQRNSSSMKEADFLQVMEHKYV 1106
Query: 1437 SSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASVNIKT 1616
SSLAQPGEPVGVLA+QSVGEP+TQMTLNTFHLAGRGEMNVTLGIPRL EI++ AS NIKT
Sbjct: 1107 SSLAQPGEPVGVLASQSVGEPATQMTLNTFHLAGRGEMNVTLGIPRLHEIVVAASKNIKT 1166
Query: 1617 PIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITEN-----IYVGLRHHLYSRVYTLVMNL 1781
P MTCPL KS ++ + LA +KK+TV DI E+ + V ++ +Y L M L
Sbjct: 1167 PFMTCPLRPNKSMEDAIR-LADKMKKITVADIIESMKVSVVPVAVKEGRICSIYKLTMKL 1225
Query: 1782 YRP---ASNSGISLKDYKETLTIQFVRELEDAIHNQINAIKRMHGIQAFDQLSQSKASKE 1952
++P + ++L+D++ETL + FVRELEDAI N I+ + R+ GI+ F S S +
Sbjct: 1226 HKPKHYPKYTDVTLEDWEETLRVGFVRELEDAIENHISLLARISGIKDFQGKSNSSNGLD 1285
Query: 1953 TD---EEVSGMRGEENDDDGDVSXXXXXXXXXXXXQKRKRQSTDEVDYDDASEDEPNEGV 2123
D E S G+ +DDD +V QK K+++TDEVDYDD E+E ++G
Sbjct: 1286 NDHSNESASNQNGQTDDDD-EVGDTEDAEEDGFDAQKSKQRATDEVDYDDGPEEETHDGE 1344
Query: 2124 LSTGFEQEKENGNCLDTEMDGDDVSRNSQDAEMDGDDDASNLPSESQSPXXXXXXXXXXX 2303
S E ++ + D + +G +V+ + D E++ D L S+S
Sbjct: 1345 KSEDVEVSEDGKD--DEDDNGVEVNGDDSDIEVNDSDKNVTLEETSKS------------ 1390
Query: 2304 XXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXDEDPHILLQQVALNVAKKVYYQ 2480
+ + K DR + V +PHILL Q+A A+KV Q
Sbjct: 1391 ---KKRKFEPASKKYDRRVYVKAGGMRFEIHFKFIG---EPHILLAQIAQRTAEKVCIQ 1443
>ref|XP_007028856.1| Nuclear RNA polymerase A1 isoform 4 [Theobroma cacao]
gi|508717461|gb|EOY09358.1| Nuclear RNA polymerase A1
isoform 4 [Theobroma cacao]
Length = 1397
Score = 751 bits (1939), Expect = 0.0
Identities = 435/851 (51%), Positives = 536/851 (62%), Gaps = 30/851 (3%)
Frame = +3
Query: 18 SFSCKPGQKVCL-VSEDEMQTLQPAILKPEPLWTGKQVITAVLNHITKGHPPFTVEKEGK 194
SFS KPGQKV + SE+ M + PAILKP+PLWTGKQVI++VL+HIT+G PPFTV K K
Sbjct: 394 SFSGKPGQKVFVSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSHITRGRPPFTVGKTAK 453
Query: 195 IPREYFGSNTGEDDLSVE---------RKTSXXXXXXXXXXXXXILYVSKNDLVRGVIDK 347
IPR++F + ++ S +K + + +NDLVRGVIDK
Sbjct: 454 IPRDFFRNRRNKNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEKILIYRNDLVRGVIDK 513
Query: 348 AQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYRDIERKQ 527
AQF YGLVHTVQELYG TAGILLS FSRLFTVFLQMHGFTCGVDDLLI++ +DIERK+
Sbjct: 514 AQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGVDDLLIMEDKDIERKK 573
Query: 528 ELEKCQDFGXXXXXXXXXXXXXRKDIRNVYSKFLGIKYDEIDPKELPNEIEYGICRYGEV 707
+LE C+ K + + + G+K + EL EIE I R GE
Sbjct: 574 QLEDCE-----------------KKVTEAHYELFGVKVNS--ETELQLEIERTIRRDGET 614
Query: 708 GTTSLDNEMRKHLS-NASTEVNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVNFQQVSSL 884
T+LD +M L+ N+S V +L +GL+K +NC SLMTT+GAKG VNFQQ+SS
Sbjct: 615 ALTALDRKMISVLNENSSKGVLTELLSEGLVKSMGENCISLMTTSGAKGSKVNFQQISSF 674
Query: 885 LGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHCMAGREGL 1064
LGQQ+LEGKRVPRMVSGKTLP F PWDW+ RAGGFISD FL+GL PQEYYFHCMAGREGL
Sbjct: 675 LGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFLSGLRPQEYYFHCMAGREGL 734
Query: 1065 VDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQTSFISKF 1244
VDTAVKTSRSGYLQRCLIKNLECLK+ YDHTVRDADGSI+QF YGEDG+DVHQTSFI+KF
Sbjct: 735 VDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQFIYGEDGIDVHQTSFIAKF 794
Query: 1245 KALEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVPEKKKH--IDDEDFMKL 1418
+AL N ++ EK L + + + LP L KA +FI+ +K +H I +DF+ L
Sbjct: 795 EALALNQDMMSEKLCSQLGEPDDSDKILPDGLRSKAEQFIREEIKKYQHQKIKPKDFLNL 854
Query: 1419 MNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA 1598
+ K+ SSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA
Sbjct: 855 LKLKFLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA 914
Query: 1599 SVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYVGLRHHLYSR-----VY 1763
S++I+TP+MTCPL K K T E A LA +KK+TV DI E++ V + +Y
Sbjct: 915 SIDIRTPVMTCPLHKGK-TKEDALCLANKMKKITVADILESMEVSVAPFAVDNGDICSIY 973
Query: 1764 TLVMNLYRP---ASNSGISLKDYKETLTIQFVRELEDAIHNQINAIKRMHGIQAFDQLSQ 1934
L M L +P NS I++KD + L + F+RELEDAI N + + ++ GI+ F SQ
Sbjct: 974 KLKMMLGKPDKYFENSDITVKDCEHILKVVFLRELEDAIQNHLVLLSKISGIKKFMPDSQ 1033
Query: 1935 SKASKETDEEVSGMRGEE-----NDDDGDVSXXXXXXXXXXXXQKRKRQSTDEVDYDDAS 2099
AS E DE+VS R E +DDD D QK+K+Q+TDE+DY+D S
Sbjct: 1034 RNASNEMDEDVSEGRSRETKNDDDDDDDDADDEERAEDLGLDAQKQKQQTTDEMDYEDDS 1093
Query: 2100 EDEPNEGVLSTGFEQE----KENGNCLDTEMDGDDVSRNSQDAEMDGDDDASNLPSESQS 2267
E E NEG E E ++ + M G D ++ ++ SN S +
Sbjct: 1094 EVEQNEGASLAALESEIDMSEDETGTIQINMIGSDNGKDEISQSSPNLENRSNPKSREEK 1153
Query: 2268 PXXXXXXXXXXXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXDEDPHILLQQV 2447
+ RK++DR+I +PHILL Q+
Sbjct: 1154 --------TGSEPKRKKMKAKFVRKESDRAI---FNAIRGLCFEVHFKLKNEPHILLAQI 1202
Query: 2448 ALNVAKKVYYQ 2480
A AKKVY Q
Sbjct: 1203 AEKTAKKVYIQ 1213
>ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform 2 [Theobroma cacao]
gi|508717459|gb|EOY09356.1| Nuclear RNA polymerase A1,
putative isoform 2 [Theobroma cacao]
Length = 1689
Score = 751 bits (1939), Expect = 0.0
Identities = 435/851 (51%), Positives = 536/851 (62%), Gaps = 30/851 (3%)
Frame = +3
Query: 18 SFSCKPGQKVCL-VSEDEMQTLQPAILKPEPLWTGKQVITAVLNHITKGHPPFTVEKEGK 194
SFS KPGQKV + SE+ M + PAILKP+PLWTGKQVI++VL+HIT+G PPFTV K K
Sbjct: 686 SFSGKPGQKVFVSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSHITRGRPPFTVGKTAK 745
Query: 195 IPREYFGSNTGEDDLSVE---------RKTSXXXXXXXXXXXXXILYVSKNDLVRGVIDK 347
IPR++F + ++ S +K + + +NDLVRGVIDK
Sbjct: 746 IPRDFFRNRRNKNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEKILIYRNDLVRGVIDK 805
Query: 348 AQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYRDIERKQ 527
AQF YGLVHTVQELYG TAGILLS FSRLFTVFLQMHGFTCGVDDLLI++ +DIERK+
Sbjct: 806 AQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGVDDLLIMEDKDIERKK 865
Query: 528 ELEKCQDFGXXXXXXXXXXXXXRKDIRNVYSKFLGIKYDEIDPKELPNEIEYGICRYGEV 707
+LE C+ K + + + G+K + EL EIE I R GE
Sbjct: 866 QLEDCE-----------------KKVTEAHYELFGVKVNS--ETELQLEIERTIRRDGET 906
Query: 708 GTTSLDNEMRKHLS-NASTEVNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVNFQQVSSL 884
T+LD +M L+ N+S V +L +GL+K +NC SLMTT+GAKG VNFQQ+SS
Sbjct: 907 ALTALDRKMISVLNENSSKGVLTELLSEGLVKSMGENCISLMTTSGAKGSKVNFQQISSF 966
Query: 885 LGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHCMAGREGL 1064
LGQQ+LEGKRVPRMVSGKTLP F PWDW+ RAGGFISD FL+GL PQEYYFHCMAGREGL
Sbjct: 967 LGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFLSGLRPQEYYFHCMAGREGL 1026
Query: 1065 VDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQTSFISKF 1244
VDTAVKTSRSGYLQRCLIKNLECLK+ YDHTVRDADGSI+QF YGEDG+DVHQTSFI+KF
Sbjct: 1027 VDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQFIYGEDGIDVHQTSFIAKF 1086
Query: 1245 KALEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVPEKKKH--IDDEDFMKL 1418
+AL N ++ EK L + + + LP L KA +FI+ +K +H I +DF+ L
Sbjct: 1087 EALALNQDMMSEKLCSQLGEPDDSDKILPDGLRSKAEQFIREEIKKYQHQKIKPKDFLNL 1146
Query: 1419 MNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA 1598
+ K+ SSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA
Sbjct: 1147 LKLKFLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA 1206
Query: 1599 SVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYVGLRHHLYSR-----VY 1763
S++I+TP+MTCPL K K T E A LA +KK+TV DI E++ V + +Y
Sbjct: 1207 SIDIRTPVMTCPLHKGK-TKEDALCLANKMKKITVADILESMEVSVAPFAVDNGDICSIY 1265
Query: 1764 TLVMNLYRP---ASNSGISLKDYKETLTIQFVRELEDAIHNQINAIKRMHGIQAFDQLSQ 1934
L M L +P NS I++KD + L + F+RELEDAI N + + ++ GI+ F SQ
Sbjct: 1266 KLKMMLGKPDKYFENSDITVKDCEHILKVVFLRELEDAIQNHLVLLSKISGIKKFMPDSQ 1325
Query: 1935 SKASKETDEEVSGMRGEE-----NDDDGDVSXXXXXXXXXXXXQKRKRQSTDEVDYDDAS 2099
AS E DE+VS R E +DDD D QK+K+Q+TDE+DY+D S
Sbjct: 1326 RNASNEMDEDVSEGRSRETKNDDDDDDDDADDEERAEDLGLDAQKQKQQTTDEMDYEDDS 1385
Query: 2100 EDEPNEGVLSTGFEQE----KENGNCLDTEMDGDDVSRNSQDAEMDGDDDASNLPSESQS 2267
E E NEG E E ++ + M G D ++ ++ SN S +
Sbjct: 1386 EVEQNEGASLAALESEIDMSEDETGTIQINMIGSDNGKDEISQSSPNLENRSNPKSREEK 1445
Query: 2268 PXXXXXXXXXXXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXDEDPHILLQQV 2447
+ RK++DR+I +PHILL Q+
Sbjct: 1446 --------TGSEPKRKKMKAKFVRKESDRAI---FNAIRGLCFEVHFKLKNEPHILLAQI 1494
Query: 2448 ALNVAKKVYYQ 2480
A AKKVY Q
Sbjct: 1495 AEKTAKKVYIQ 1505
>ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citrus clementina]
gi|557523327|gb|ESR34694.1| hypothetical protein
CICLE_v10004132mg [Citrus clementina]
Length = 1715
Score = 747 bits (1928), Expect = 0.0
Identities = 441/876 (50%), Positives = 544/876 (62%), Gaps = 50/876 (5%)
Frame = +3
Query: 3 TSSTGSFSCKPGQKVCLV-SEDEMQTLQPAILKPEPLWTGKQVITAVLNHITKGHPPFTV 179
+S GSF+ KPGQ+V + SE E+ L PAI KPEPLWTGKQVITAVLNHIT+G PPF V
Sbjct: 682 SSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFIV 741
Query: 180 EKEGKIPREYFGSNTGEDDLSV--------------------------------ERKTSX 263
E+ GK+P+++F + D S E K +
Sbjct: 742 ERGGKLPQDFFKTRFNADKQSGRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAE 801
Query: 264 XXXXXXXXXXXXILYVSKNDLVRGVIDKAQFGSYGLVHTVQELYGPKTAGILLSAFSRLF 443
L + KNDLVRGVIDKAQF YGLVHTVQELYG TAG LLSA SRLF
Sbjct: 802 KNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGTLLSALSRLF 861
Query: 444 TVFLQMHGFTCGVDDLLILKYRDIERKQELEKCQDFGXXXXXXXXXXXXXRKDIRNVYSK 623
TVFLQMHGFTCGVDDLLILK ++ ERK L ++ G + V+ +
Sbjct: 862 TVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIG-----------------KRVHLE 904
Query: 624 FLGIKYD-EIDPKELPNEIEYGICRYGEVGTTSLDNEMRKHLS-NASTEVNKDLFVKGLL 797
L ++ EIDP +L +EIE + G+ D +M L+ + S+ V DL +GLL
Sbjct: 905 ALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINDLLSEGLL 964
Query: 798 KPFPKNCFSLMTTTGAKGGMVNFQQVSSLLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPR 977
KP KN SLMTT+GAKG VNFQQ+SS LGQQ+LEGKRVPRMVSGKTLPSF PWDW+PR
Sbjct: 965 KPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPR 1024
Query: 978 AGGFISDNFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDHT 1157
AGGFI D FLTGL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLK+ YD++
Sbjct: 1025 AGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYS 1084
Query: 1158 VRDADGSIIQFSYGEDGVDVHQTSFISKFKALEENHQILREKFLHHLDKSNSYIEHLPPK 1337
VRDADGSI+QF YGEDGVDVHQTSFISKF AL N +++ +K LD SN+YI LP
Sbjct: 1085 VRDADGSIVQFCYGEDGVDVHQTSFISKFDALAANQEMIYKKCSGQLDASNAYIMELPDA 1144
Query: 1338 LEKKAREFIKGVPEKKKHIDDEDFMKLMNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTL 1517
L+ A +F + +DF+KL+ HK+ SLAQPGEPVG+LAAQSVGEPSTQMTL
Sbjct: 1145 LKDNAEKFADKF--LSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLAAQSVGEPSTQMTL 1202
Query: 1518 NTFHLAGRGEMNVTLGIPRLQEILMTASVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKV 1697
NTFHLAGRGEMNVTLGIPRLQEIL AS +IKTP++TCPLL K+ D+ AK LA LKK+
Sbjct: 1203 NTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGKTEDD-AKRLADKLKKI 1261
Query: 1698 TVGDITENIYVGLRHHL-----YSRVYTLVMNLYRP---ASNSGISLKDYKETLTIQFVR 1853
TV DI + I V +R VY L M LY+P + + I+L+D++E L + FVR
Sbjct: 1262 TVADIVKKISVKVRAFTSHDGQACTVYVLTMELYKPKNYPTYTDITLEDWEEILEVVFVR 1321
Query: 1854 ELEDAIHNQINAIKRMHGIQAFDQLSQSKASKETDEEVSG----MRGEENDDDGDVSXXX 2021
ELED I N + + +++GI+ KAS ETD+E SG RG+ DDD D +
Sbjct: 1322 ELEDTIQNHLLLLSKINGIKNVASGLTQKASNETDQEGSGNVSQCRGD--DDDADDADGE 1379
Query: 2022 XXXXXXXXXQKRKRQSTDEVDYDDASEDEPNEGVLSTGFEQEKENGNCLDTEMDGDDVSR 2201
K+K+++TDE DY+D SE E N+GV + GF E + ++E+D D
Sbjct: 1380 EAEDLGMDAHKQKQRATDEKDYEDGSEGEMNDGVSAAGFGSEIDQA---ESEIDDDQAET 1436
Query: 2202 NSQDAEMDGD-DDASNLPSESQSP--XXXXXXXXXXXXXXXXXXXQLSRKDADRSIEVXX 2372
+D + +++ + SE+ P +L +KD DR+I V
Sbjct: 1437 EIEDDRATNEIENSQDQASENLKPFTPKSSKKKSKSKTKRKKARAKLVKKDTDRAIYVAA 1496
Query: 2373 XXXXXXXXXXXXXXDEDPHILLQQVALNVAKKVYYQ 2480
+P+ILL Q+A +VAKKVY Q
Sbjct: 1497 RGMHFEAHFKFI---NEPNILLAQIARHVAKKVYIQ 1529
>ref|XP_007145632.1| hypothetical protein PHAVU_007G255400g [Phaseolus vulgaris]
gi|561018822|gb|ESW17626.1| hypothetical protein
PHAVU_007G255400g [Phaseolus vulgaris]
Length = 1637
Score = 745 bits (1923), Expect = 0.0
Identities = 435/842 (51%), Positives = 539/842 (64%), Gaps = 20/842 (2%)
Frame = +3
Query: 15 GSFSCKPGQKVCLV-SEDEMQTLQPAILKPEPLWTGKQVITAVLNHITKGHPPFTVEKEG 191
GSFS K GQKV + SE EM PAI KPEPLWTGKQVI+A+L +IT+ PPFTVEK
Sbjct: 655 GSFSGKHGQKVFMTNSEFEMFLFPPAIWKPEPLWTGKQVISALLYYITRDSPPFTVEKNA 714
Query: 192 KIPREYFGSNTGEDDLSVERKTSXXXXXXXXXXXXXILYVSKNDLVRGVIDKAQFGSYGL 371
KIP +F + + +R T L + KNDLVRGV+DKAQFG YG+
Sbjct: 715 KIPSNFFKTQVRDG----KRHTRDKSRNKVEPDDEDKLLIYKNDLVRGVVDKAQFGDYGI 770
Query: 372 VHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYRDIERKQELEKCQDF 551
+HTVQELYG K AG LLSA SRLFT FLQMHGFTCGVDDL+I + +D+ER +L C++
Sbjct: 771 IHTVQELYGSKVAGNLLSALSRLFTTFLQMHGFTCGVDDLMITEEKDVERMDQLRSCEEI 830
Query: 552 GXXXXXXXXXXXXXRKDIRNVYSKFLGI-KYDEIDPKELPNEIEYGICRYGEVGTTSLDN 728
G DI V+ +F+G+ D IDP L IE I GE T LD
Sbjct: 831 G---------------DI--VHREFIGVMNSDIIDPITLQLNIEKKIRSNGEAALTYLDR 873
Query: 729 EMRKHL-SNASTEVNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVNFQQVSSLLGQQDLE 905
+M +L S S+ + KDL G+LKP KNC SLMTT+GAKG MVNFQQ+SS LGQQ+LE
Sbjct: 874 KMTSNLNSRTSSGILKDLLSDGILKPSGKNCISLMTTSGAKGSMVNFQQISSHLGQQELE 933
Query: 906 GKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHCMAGREGLVDTAVKT 1085
GKRVPRMVSGKTLP F PWD SPRAGGFI D FLTGLHPQEYYFHCMAGREGLVDTAVKT
Sbjct: 934 GKRVPRMVSGKTLPCFAPWDCSPRAGGFIIDRFLTGLHPQEYYFHCMAGREGLVDTAVKT 993
Query: 1086 SRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQTSFISKFKALEENH 1265
SRSGYLQRCL+KNLECLKVCYDHTVRDADGSIIQF YGEDGVDVH TSFI+KF+AL N
Sbjct: 994 SRSGYLQRCLMKNLECLKVCYDHTVRDADGSIIQFHYGEDGVDVHHTSFINKFEALSTNK 1053
Query: 1266 QILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVPEKKK--HIDDEDFMKLMNHKYFS 1439
+++ LD+S+ YI LP L++KA F + +++ + +F+KLM HKY S
Sbjct: 1054 ELVYGNCCRQLDRSSPYINKLPDALKEKAENFFRDSLKQRNLGSLKRAEFLKLMEHKYVS 1113
Query: 1440 SLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASVNIKTP 1619
LAQPGE VGVLA+QSVGEP+TQMTLNTFHLAGRGEMNVTLGIPRLQEI+M A+ +IKTP
Sbjct: 1114 CLAQPGESVGVLASQSVGEPATQMTLNTFHLAGRGEMNVTLGIPRLQEIVMAAARDIKTP 1173
Query: 1620 IMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITEN-----IYVGLRHHLYSRVYTLVMNLY 1784
MTCPL KS +E A LA LKK+TV DI ++ + V + +Y LVM LY
Sbjct: 1174 FMTCPLRSNKSMEE-AICLADKLKKITVADIIKSMKVSVVPVSVLGGQVCSIYKLVMKLY 1232
Query: 1785 RP---ASNSGISLKDYKETLTIQFVRELEDAIHNQINAIKRMHGIQAF--DQLSQSKASK 1949
+P S I+L+D+++TL I FVRELEDAI N + + ++ GI+ F D S S +S+
Sbjct: 1233 KPKQYPKYSDITLEDWEDTLRISFVRELEDAIENHMALLSKISGIKKFKTDPQSHSNSSE 1292
Query: 1950 E-----TDEEVSGMRGEENDDDGDVSXXXXXXXXXXXXQKRKRQSTDEVDYDDASEDEPN 2114
+ ++ E G +++DDD V QKRKRQ TDEVDY+D E+E +
Sbjct: 1293 DAHGNGSESETKGKSNDDDDDDDVVEDTEGYEDLGSDAQKRKRQGTDEVDYEDGPEEETH 1352
Query: 2115 EGVLSTGFEQEKENGNCLDTEMDGDDVSRNSQDAEMDGDDDASNLPSESQSPXXXXXXXX 2294
+GVLS E +++N + D+++ ++ D+E G D+ SES+S
Sbjct: 1353 DGVLSEEIENDEDNVD--------DNMTLDASDSE--GLDEL----SESKS------IFE 1392
Query: 2295 XXXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXDEDPHILLQQVALNVAKKVY 2474
+ + + DR++ V +P ILL ++AL AKKV
Sbjct: 1393 KDSLKREKKKSRPTTRKYDRAVFVKAKGMHFQIHFKFTG---EPDILLAEIALRSAKKVC 1449
Query: 2475 YQ 2480
Q
Sbjct: 1450 IQ 1451
>ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Citrus
sinensis]
Length = 1715
Score = 744 bits (1921), Expect = 0.0
Identities = 439/876 (50%), Positives = 544/876 (62%), Gaps = 50/876 (5%)
Frame = +3
Query: 3 TSSTGSFSCKPGQKVCLV-SEDEMQTLQPAILKPEPLWTGKQVITAVLNHITKGHPPFTV 179
+S GSF+ KPGQ+V + SE E+ L PAI KPEPLWTGKQVITAVLNHIT+G PPF V
Sbjct: 682 SSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVV 741
Query: 180 EKEGKIPREYFGSNTGEDDLSV--------------------------------ERKTSX 263
E+ GK+P+++F + D S E K +
Sbjct: 742 ERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAE 801
Query: 264 XXXXXXXXXXXXILYVSKNDLVRGVIDKAQFGSYGLVHTVQELYGPKTAGILLSAFSRLF 443
L + KNDLVRGVIDKAQF YGLVHTVQELYG TAG LLSA SRLF
Sbjct: 802 KNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGTLLSALSRLF 861
Query: 444 TVFLQMHGFTCGVDDLLILKYRDIERKQELEKCQDFGXXXXXXXXXXXXXRKDIRNVYSK 623
TVFLQMHGFTCGVDDLLILK ++ ERK L ++ G + V+ +
Sbjct: 862 TVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIG-----------------KRVHLE 904
Query: 624 FLGIKYD-EIDPKELPNEIEYGICRYGEVGTTSLDNEMRKHLS-NASTEVNKDLFVKGLL 797
L ++ EIDP +L +EIE + G+ D +M L+ + S+ V +L +GLL
Sbjct: 905 ALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLL 964
Query: 798 KPFPKNCFSLMTTTGAKGGMVNFQQVSSLLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPR 977
KP KN SLMTT+GAKG VNFQQ+SS LGQQ+LEGKRVPRMVSGKTLPSF PWDW+PR
Sbjct: 965 KPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPR 1024
Query: 978 AGGFISDNFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDHT 1157
AGGFI D FLTGL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLK+ YD++
Sbjct: 1025 AGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYS 1084
Query: 1158 VRDADGSIIQFSYGEDGVDVHQTSFISKFKALEENHQILREKFLHHLDKSNSYIEHLPPK 1337
VRDADGSI+QF YGEDGVDVHQTSFISKF AL N +++ +K LD SN+YI LP
Sbjct: 1085 VRDADGSIVQFCYGEDGVDVHQTSFISKFDALAANQEMIYKKCSGQLDASNAYIMELPDA 1144
Query: 1338 LEKKAREFIKGVPEKKKHIDDEDFMKLMNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTL 1517
L+ A +F + +DF+KL+ HK+ SLAQPGEPVG+LA+QSVGEPSTQMTL
Sbjct: 1145 LKDNAEKFADKF--LSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTL 1202
Query: 1518 NTFHLAGRGEMNVTLGIPRLQEILMTASVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKV 1697
NTFHLAGRGEMNVTLGIPRLQEIL AS +IKTP++TCPLL K+ D+ AK LA LKK+
Sbjct: 1203 NTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGKTEDD-AKRLADKLKKI 1261
Query: 1698 TVGDITENIYVGLRHHL-----YSRVYTLVMNLYRP---ASNSGISLKDYKETLTIQFVR 1853
TV DI + I V +R VY L M LY+P + + I+L+D++E L + FVR
Sbjct: 1262 TVADIVKKISVKVRAFTSHDGQACSVYVLTMELYKPKNYPTYTDITLEDWEEILEVVFVR 1321
Query: 1854 ELEDAIHNQINAIKRMHGIQAFDQLSQSKASKETDEEVSG----MRGEENDDDGDVSXXX 2021
ELED I N + + +++GI+ KAS ETD++ SG RG+ DDD D +
Sbjct: 1322 ELEDTIQNHLLLLSKINGIKNVASGLTQKASNETDQDGSGNVSQCRGD--DDDADDADGE 1379
Query: 2022 XXXXXXXXXQKRKRQSTDEVDYDDASEDEPNEGVLSTGFEQEKENGNCLDTEMDGDDVSR 2201
K+K+++TDE DY+D SE+E N+GV + GF E + ++E+D D
Sbjct: 1380 EAEDLGMDAHKQKQRATDEKDYEDGSEEEMNDGVSAAGFGSEIDQA---ESEIDDDQAET 1436
Query: 2202 NSQDAEMDGDDDAS-NLPSESQSP--XXXXXXXXXXXXXXXXXXXQLSRKDADRSIEVXX 2372
+D + + S + SE+ P +L +KD DR+I V
Sbjct: 1437 EIEDDRATNEIETSQDQASENLKPFTPKSSKKKSKSKSKRKKARAKLVKKDTDRAIYVAA 1496
Query: 2373 XXXXXXXXXXXXXXDEDPHILLQQVALNVAKKVYYQ 2480
+P+ILL Q+A +VAKKVY Q
Sbjct: 1497 RGMHFEAHFKFI---NEPNILLAQIARHVAKKVYIQ 1529
>ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
arietinum]
Length = 1650
Score = 739 bits (1909), Expect = 0.0
Identities = 431/841 (51%), Positives = 527/841 (62%), Gaps = 19/841 (2%)
Frame = +3
Query: 15 GSFSCKPGQKVCLVSED-EMQTLQPAILKPEPLWTGKQVITAVLNHITKGHPPFTVEKEG 191
G F KPGQK+ + + D EM PAI KPEPLWTGKQVI+A+L +ITKG PPFTVEK
Sbjct: 658 GPFPGKPGQKIFMSNSDSEMFLFPPAIFKPEPLWTGKQVISALLYYITKGSPPFTVEKNA 717
Query: 192 KIPREYFGSNTGEDDLSVERKTSXXXXXXXXXXXXXILYVSKNDLVRGVIDKAQFGSYGL 371
KIP +F + E +K + L + +NDLVRGV+DKAQFG YG+
Sbjct: 718 KIPSSFFKTRMREG-----KKRTKDTSIKKDEPDEDKLLIYRNDLVRGVVDKAQFGDYGI 772
Query: 372 VHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYRDIERKQELEKCQDF 551
VHTVQE YG TAGILLSA SRLFT FLQMHGFTCGVDDLL+ + +D ER +LE C++
Sbjct: 773 VHTVQEFYGSNTAGILLSALSRLFTNFLQMHGFTCGVDDLLLTEGKDSERTNQLESCEEI 832
Query: 552 GXXXXXXXXXXXXXRKDIRNVYSKFLGI-KYDEIDPKELPNEIEYGICRYGEVGTTSLDN 728
G DI V+ +F+G+ + D IDP + +E I GE T LD
Sbjct: 833 G---------------DI--VHREFIGVMEGDNIDPITMQLNVEKKIRSNGEAAITYLDR 875
Query: 729 EMRKHL-SNASTEVNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVNFQQVSSLLGQQDLE 905
+M +L S ST V K L +G+LKP KN SLMTT+GAKG MVNFQQ+SS LGQQ+LE
Sbjct: 876 KMISNLNSRTSTGVLKVLLSEGILKPSGKNWISLMTTSGAKGSMVNFQQISSHLGQQELE 935
Query: 906 GKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHCMAGREGLVDTAVKT 1085
GKRVPRMVSGKTLP F WD SPRAGGFI D FLT L PQEYYFHCMAGREGLVDTAVKT
Sbjct: 936 GKRVPRMVSGKTLPCFTSWDCSPRAGGFIIDRFLTALRPQEYYFHCMAGREGLVDTAVKT 995
Query: 1086 SRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQTSFISKFKALEENH 1265
SRSGYLQRCL+KNLECLKVCYDHTVRDADGSIIQF YGEDGVDVHQTSFI+KF+AL N
Sbjct: 996 SRSGYLQRCLMKNLECLKVCYDHTVRDADGSIIQFHYGEDGVDVHQTSFINKFEALSTNK 1055
Query: 1266 QILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVPEKKKH---IDDEDFMKLMNHKYF 1436
+++ LDKS+ YI LP L+ KA +FI K+++ + +F+ LM HKY
Sbjct: 1056 ELVYSNCCRELDKSSPYINKLPDALKGKAEKFILDSSSKQRNSGSMTHTNFLHLMEHKYV 1115
Query: 1437 SSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASVNIKT 1616
SSLAQPGEPVGVLA+QSVGEP+TQMTLNTFHLAGRGEMNVTLGIPRLQEIL AS +IKT
Sbjct: 1116 SSLAQPGEPVGVLASQSVGEPATQMTLNTFHLAGRGEMNVTLGIPRLQEILTAASAHIKT 1175
Query: 1617 PIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYVG-----LRHHLYSRVYTLVMNL 1781
P MTCPL KS ++ + LA +KK+TV DI E++ V ++ +Y L+M L
Sbjct: 1176 PFMTCPLRPNKSMEDAIR-LADKMKKITVADIIESMKVSVVPVTVQDGRICSIYKLMMKL 1234
Query: 1782 YRP---ASNSGISLKDYKETLTIQFVRELEDAIHNQINAIKRMHGIQAFDQLSQSKASKE 1952
++P + ++LKD++ETL + FVR LEDAI N I + ++ GI F +Q +S
Sbjct: 1235 HKPKHYPKYTDVTLKDWEETLRVSFVRGLEDAIENNIALLAKISGITNFKTDAQPNSSNG 1294
Query: 1953 TDEEVS-GMRGEENDDDGDVSXXXXXXXXXXXXQKRKRQSTDEVDYDDASEDEP-NEGVL 2126
+++ S G +++DDDGD QK KRQ D+VDYDD E+E +G L
Sbjct: 1295 AEDDPSNGKTNDDDDDDGDADDTEGAEDLGLDAQKSKRQVVDDVDYDDGPEEETLEDGEL 1354
Query: 2127 S---TGFEQEKENGNCLDTEMDGDDVSRNSQDAEMDGDDDASNLPSESQSPXXXXXXXXX 2297
S G E K+N D DGD D + GD+D S++
Sbjct: 1355 SEDLEGVEDAKDNEYVKD---DGD----GKDDEDGKGDEDGSDIEVNENDKKVTLGANYS 1407
Query: 2298 XXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXDEDPHILLQQVALNVAKKVYY 2477
+S+K DR + V +PHILL Q+A A+KV
Sbjct: 1408 QGPEENSKSQPVSKK-FDRRVYVKFEKRHFEIHFKFTG---EPHILLAQIAQKTAEKVCI 1463
Query: 2478 Q 2480
Q
Sbjct: 1464 Q 1464
>ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
RPA1-like [Cucumis sativus]
Length = 1652
Score = 739 bits (1908), Expect = 0.0
Identities = 435/841 (51%), Positives = 537/841 (63%), Gaps = 15/841 (1%)
Frame = +3
Query: 3 TSSTGSFSCKPGQKVCLVSED-EMQTLQPAILKPEPLWTGKQVITAVLNHITKGHPPFTV 179
TS + S KPGQK+ + D EM + PA+ KPEPLWTGKQV+TA+L+HIT+G PPF V
Sbjct: 659 TSKACASSEKPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFFV 718
Query: 180 EKEGKIPREYFGSNTGEDDLSVERKTSXXXXXXXXXXXXXILYVSKNDLVRGVIDKAQFG 359
EK+ KIPR + + G S +++ + L + KN+LVRGVIDKAQFG
Sbjct: 719 EKDVKIPRGFLILDEGN---SKKKEHTKVDKLKAARLDDDSLLIFKNELVRGVIDKAQFG 775
Query: 360 SYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYRDIERKQELEK 539
YGLVHTVQELYG TAG+LLS SRLFTVFLQ HGFTCGVDDLL+++ D ER+++L+
Sbjct: 776 DYGLVHTVQELYGSNTAGLLLSVMSRLFTVFLQTHGFTCGVDDLLLIECMDKEREKQLQI 835
Query: 540 CQDFGXXXXXXXXXXXXXRKDIRNVYSKFLGIKYDE-IDPKELPNEIEYGICRYGEVGTT 716
C+ G V+ FL +K E +DP L IE I GE T
Sbjct: 836 CEKIG-----------------EQVHLGFLKVKDGEKLDPMTLQLNIEKTISYNGEAALT 878
Query: 717 SLDNEMRKHLSN--ASTEVNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVNFQQVSSLLG 890
SLD +M L+ +++V KDL +GLLKP KNC SLMTT+GAKGG NFQQ+SS LG
Sbjct: 879 SLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLMTTSGAKGGTANFQQISSHLG 938
Query: 891 QQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHCMAGREGLVD 1070
QQ LEGKRVPRMVSGKTLP F PWDW+ RAGGFI D FLTGL PQEYYFHCMAGREGLVD
Sbjct: 939 QQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAGREGLVD 998
Query: 1071 TAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQTSFISKFKA 1250
TAVKTSRSGYLQRCLIKNLE LK+CYDHTVRDADGS+IQF YGEDGVDVH+T+FI+KF+A
Sbjct: 999 TAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGSVIQFQYGEDGVDVHKTAFITKFEA 1058
Query: 1251 LEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVPEKKK---HIDDEDFMKLM 1421
L N +L E H L K N +I LP L +K EFI K K + EDF++L+
Sbjct: 1059 LAANQDMLYENSHHQLGKYNVFINELPSALREKG-EFIYNSLSKDKVPGLVLKEDFIRLL 1117
Query: 1422 NHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAS 1601
+KY SSLAQPGEPVGVLAAQS+GEPSTQMTLNTFH AGRGEMNVTLGIPRLQEILMTAS
Sbjct: 1118 ENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTAS 1177
Query: 1602 VNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYVGL-----RHHLYSRVYT 1766
+IKTPIMTCP LKE + ++AKGLA LKK+TV DI E++ V + R +Y
Sbjct: 1178 QDIKTPIMTCP-LKEGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQRKREICSIYK 1236
Query: 1767 LVMNLY---RPASNSGISLKDYKETLTIQFVRELEDAIHNQINAIKRMHGIQAFDQLSQS 1937
L ++ Y A + IS +D + TL F+ ELE I ++ + +++GI+ F SQS
Sbjct: 1237 LRIDFYPLENNAQHGHISPEDLENTLETVFLEELEGLIEREMVLLSKINGIKXFVPDSQS 1296
Query: 1938 KASKETDEEVSGMRGEENDDDGDVSXXXXXXXXXXXXQKRKRQSTDEVDYDDASEDEPNE 2117
K S E D EVS R EE DDD + + +K+K Q+ DE+DY+D SED+ N
Sbjct: 1297 KGSSEGD-EVSSSRQEEMDDDDEGNDLDVAEDLGSDXEKQKLQANDEMDYEDDSEDDLNA 1355
Query: 2118 GVLSTGFEQEKENGNCLDTEMDGDDVSRNSQDAEMDGDDDASNLPSESQSPXXXXXXXXX 2297
STGFE E + G+ + E+ +D+ +D+ + + ++ S+S S
Sbjct: 1356 KESSTGFESEVDQGD--EAEITNNDMIEIVKDSASENQPEIVDV-SKSMS----KEKTTE 1408
Query: 2298 XXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXDEDPHILLQQVALNVAKKVYY 2477
+L RK+ DRSI V +PH LL Q+ A+KV
Sbjct: 1409 TSKEKKKVKSELVRKETDRSIFV---EAKENHFEVHFKFTNEPHTLLSQIVQRAAQKVSI 1465
Query: 2478 Q 2480
Q
Sbjct: 1466 Q 1466
>ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Cucumis
sativus]
Length = 1650
Score = 736 bits (1901), Expect = 0.0
Identities = 429/841 (51%), Positives = 534/841 (63%), Gaps = 15/841 (1%)
Frame = +3
Query: 3 TSSTGSFSCKPGQKVCLVSED-EMQTLQPAILKPEPLWTGKQVITAVLNHITKGHPPFTV 179
TS + S KPGQK+ + D EM + PA+ KPEPLWTGKQV+TA+L+HIT+G PPF V
Sbjct: 653 TSKACASSEKPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFFV 712
Query: 180 EKEGKIPREYFGSNTGEDDLSVERKTSXXXXXXXXXXXXXILYVSKNDLVRGVIDKAQFG 359
EK+ KIPR +F ++ S +++ + L + KN+LVRGVIDKAQFG
Sbjct: 713 EKDVKIPRGFFKCRDMGNNSSKKKEHTKVDKLKAARLDDDSLLIFKNELVRGVIDKAQFG 772
Query: 360 SYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYRDIERKQELEK 539
YGLVHTVQELYG TAG+LLS SRLFTVFLQ HGFTCGVDDLL+++ D ER+++L+
Sbjct: 773 DYGLVHTVQELYGSNTAGLLLSVMSRLFTVFLQTHGFTCGVDDLLLIECMDKEREKQLQI 832
Query: 540 CQDFGXXXXXXXXXXXXXRKDIRNVYSKFLGIKYDE-IDPKELPNEIEYGICRYGEVGTT 716
C+ G V+ FL +K E +DP L IE I GE T
Sbjct: 833 CEKIG-----------------EQVHLGFLKVKDGEKLDPMTLQLNIEKTISYNGEAALT 875
Query: 717 SLDNEMRKHLSN--ASTEVNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVNFQQVSSLLG 890
SLD +M L+ +++V KDL +GLLKP KNC SLMTT+GAKGG NFQQ+SS LG
Sbjct: 876 SLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLMTTSGAKGGTANFQQISSHLG 935
Query: 891 QQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHCMAGREGLVD 1070
QQ LEGKRVPRMVSGKTLP F PWDW+ RAGGFI D FLTGL PQEYYFHCMAGREGLVD
Sbjct: 936 QQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAGREGLVD 995
Query: 1071 TAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQTSFISKFKA 1250
TAVKTSRSGYLQRCLIKNLE LK+CYDHTVRDADGS+IQF YGEDGVDVH+T+FI+KF+A
Sbjct: 996 TAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGSVIQFQYGEDGVDVHKTAFITKFEA 1055
Query: 1251 LEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVPEKKK---HIDDEDFMKLM 1421
L N +L E H L K N +I LP L +K EFI K K + EDF++L+
Sbjct: 1056 LAANQDMLYENSHHQLGKYNVFINELPSALREKG-EFIYNSLSKDKVPGLVLKEDFIRLL 1114
Query: 1422 NHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAS 1601
+KY SSLAQPGEPVGVLAAQS+GEPSTQMTLNTFH GRGEMNVTLGI RLQEILMTAS
Sbjct: 1115 ENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHVGRGEMNVTLGILRLQEILMTAS 1174
Query: 1602 VNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYVGL-----RHHLYSRVYT 1766
+IKTPIMTCP LKE + ++AKGLA LKK+TV DI E++ V + R +Y
Sbjct: 1175 QDIKTPIMTCP-LKEGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQRKREICSIYK 1233
Query: 1767 LVMNLY---RPASNSGISLKDYKETLTIQFVRELEDAIHNQINAIKRMHGIQAFDQLSQS 1937
L ++ Y A + IS +D + TL F+ ELE I ++ + +++GI+ F SQS
Sbjct: 1234 LRIDFYPLENNAQHGHISPEDLENTLETVFLEELEGLIEREMVLLSKINGIKNFVPDSQS 1293
Query: 1938 KASKETDEEVSGMRGEENDDDGDVSXXXXXXXXXXXXQKRKRQSTDEVDYDDASEDEPNE 2117
K S E DE S + E +DDD + + +K+K Q+ DE+DY+D SED+ N
Sbjct: 1294 KGSSEGDEVSSSRQKENDDDDDEGNDLDVAEDLGSDMKKQKLQANDEMDYEDDSEDDLNA 1353
Query: 2118 GVLSTGFEQEKENGNCLDTEMDGDDVSRNSQDAEMDGDDDASNLPSESQSPXXXXXXXXX 2297
STGFE E + G+ + E+ +D+ +D+ + + ++ S+S S
Sbjct: 1354 KESSTGFESEVDQGD--EAEITNNDMIEIVKDSASENQPEIVDV-SKSMS----KEKTTE 1406
Query: 2298 XXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXDEDPHILLQQVALNVAKKVYY 2477
+L RK+ DRSI V +PH LL Q+ A+KV
Sbjct: 1407 TSKEKKKVKSELVRKETDRSIFV---EAKENHFEVHFKFTNEPHTLLSQIVQRAAQKVSI 1463
Query: 2478 Q 2480
Q
Sbjct: 1464 Q 1464
>ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
arietinum]
Length = 1660
Score = 736 bits (1900), Expect = 0.0
Identities = 426/846 (50%), Positives = 532/846 (62%), Gaps = 21/846 (2%)
Frame = +3
Query: 15 GSFSCKPGQKVCLVSED-EMQTLQPAILKPEPLWTGKQVITAVLNHITKGHPPFTVEKEG 191
G F KPGQK+ + + D EM PAI KPEPLWTGKQVI+A+L +ITKG PPFTVEK
Sbjct: 662 GPFPGKPGQKIFMSNSDSEMFLFPPAIFKPEPLWTGKQVISALLYYITKGSPPFTVEKNA 721
Query: 192 KIPREYFGSNTGEDDLSVERKTSXXXXXXXXXXXXXILYVSKNDLVRGVIDKAQFGSYGL 371
KIP +F + E +K + L + KNDLVRGV+DKAQFG YG+
Sbjct: 722 KIPSSFFKTRMREG-----KKRTKDTSIKKDEPDEDKLLIYKNDLVRGVVDKAQFGDYGI 776
Query: 372 VHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYRDIERKQELEKCQDF 551
VHTVQE YG TAG LLSA SRLFT FLQMHGFTCGVDDLL+ + +D ER +LE C++
Sbjct: 777 VHTVQEFYGSNTAGFLLSALSRLFTNFLQMHGFTCGVDDLLLTEGKDSERTNQLESCEEI 836
Query: 552 GXXXXXXXXXXXXXRKDIRNVYSKFLGI-KYDEIDPKELPNEIEYGICRYGEVGTTSLDN 728
G DI V+ +F+G+ + D IDP + +E I GE T LD
Sbjct: 837 G---------------DI--VHREFIGVMEGDNIDPITMQLNVEKKIRSNGEAAITYLDR 879
Query: 729 EMRKHL-SNASTEVNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVNFQQVSSLLGQQDLE 905
+M +L S S+ V K+L +G+LKP KN SLMTT+GAKG MVNFQQ+SS LGQQ+LE
Sbjct: 880 KMISNLNSRTSSGVLKELLSEGILKPSGKNWISLMTTSGAKGSMVNFQQISSHLGQQELE 939
Query: 906 GKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHCMAGREGLVDTAVKT 1085
GKRVPRMVSGKTLP F WD SPRAGGFI D FLT L PQEYYFHCMAGREGLVDTAVKT
Sbjct: 940 GKRVPRMVSGKTLPCFTSWDCSPRAGGFIIDRFLTALRPQEYYFHCMAGREGLVDTAVKT 999
Query: 1086 SRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQTSFISKFKALEENH 1265
SRSGYLQRCL+KNLECLKVCYDHTVRDADGSIIQF YGEDGVDVHQTSFI+KF+AL N
Sbjct: 1000 SRSGYLQRCLMKNLECLKVCYDHTVRDADGSIIQFHYGEDGVDVHQTSFINKFEALSTNK 1059
Query: 1266 QILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVPEKKKH---IDDEDFMKLMNHKYF 1436
+++ LD+S+ YI LP L+ KA +FI+ K+++ + +F++LM HKY
Sbjct: 1060 ELVYSNCCRELDESSPYINKLPDALKGKAEKFIRDSSSKQRNSGSMTHTNFLQLMEHKYV 1119
Query: 1437 SSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASVNIKT 1616
SSLAQPGEPVGVLA+QSVGEP+TQMTLNTFHLAGRGEMNVTLGIPRLQEIL AS +IKT
Sbjct: 1120 SSLAQPGEPVGVLASQSVGEPATQMTLNTFHLAGRGEMNVTLGIPRLQEILTAASAHIKT 1179
Query: 1617 PIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYVG-----LRHHLYSRVYTLVMNL 1781
P MTCPL KS ++ + LA +KK+TV DI E++ V ++ +Y L+M L
Sbjct: 1180 PFMTCPLRPNKSMEDAIR-LADKMKKITVADIIESMKVSVVPVTVQDGRICSIYKLMMKL 1238
Query: 1782 YRP---ASNSGISLKDYKETLTIQFVRELEDAIHNQINAIKRMHGIQAFDQLSQSKASKE 1952
++P + ++LKD++ETL + FVR LEDAI N I + ++ GI F +Q +S
Sbjct: 1239 HKPKHYPKYTDVTLKDWEETLRVSFVRGLEDAIENNIALLAKISGITNFKTDAQPNSSNG 1298
Query: 1953 TDEEVSGMR---GEENDDDGDVSXXXXXXXXXXXXQKRKRQSTDEVDYDDASEDEP-NEG 2120
+++ S + +++DDDGD QK KRQ D+VDYDD E+E +G
Sbjct: 1299 AEDDPSNGKTNDDDDDDDDGDADDTEGAEDLGLDAQKSKRQVVDDVDYDDGPEEETLEDG 1358
Query: 2121 VLS---TGFEQEKENGNCLDTEMDGDDVSRNSQDAEMDGDDDASNLPSESQSPXXXXXXX 2291
LS G E K+N + D DGD D + GD+D S++
Sbjct: 1359 ELSEDLEGVEDAKDNEHVKD---DGD----GKDDEDGKGDEDGSDIEVNENDKKVTLGVN 1411
Query: 2292 XXXXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXDEDPHILLQQVALNVAKKV 2471
+S+K DR + V ++PHILL Q+ +A+K
Sbjct: 1412 YSQGPEENSKSQPVSKK-FDRRVYV---KFEKRHFEIHFKFTDEPHILLAQLLSTIAQKT 1467
Query: 2472 YYQIQI 2489
++ I
Sbjct: 1468 AEKVCI 1473
>ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Glycine
max]
Length = 1651
Score = 733 bits (1892), Expect = 0.0
Identities = 429/842 (50%), Positives = 522/842 (61%), Gaps = 20/842 (2%)
Frame = +3
Query: 15 GSFSCKPGQKVCLV-SEDEMQTLQPAILKPEPLWTGKQVITAVLNHITKGHPPFTVEKEG 191
GSF K GQKV + SE EM PAI KPEPLWTGKQVI+A+L +IT+G PPFT EK
Sbjct: 667 GSFYGKHGQKVFISNSESEMFLFPPAIWKPEPLWTGKQVISALLYYITRGSPPFTAEKNA 726
Query: 192 KIPREYFGSNTGEDDLSVERKTSXXXXXXXXXXXXXILYVSKNDLVRGVIDKAQFGSYGL 371
KIP +F + + E + L + KNDLVRGV+DKAQFG YG+
Sbjct: 727 KIPSNFFKTQIRKGKRYTEDTSKKKDKPDEDK-----LLIYKNDLVRGVVDKAQFGDYGM 781
Query: 372 VHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYRDIERKQELEKCQDF 551
+HTVQELYG AG LLSA SRLFT FLQMHGFTCGVDDL++ + +D+ER +L+ C+
Sbjct: 782 IHTVQELYGSNVAGNLLSALSRLFTTFLQMHGFTCGVDDLMLTEGKDVERMNQLKSCEII 841
Query: 552 GXXXXXXXXXXXXXRKDIRNVYSKFLGIKY-DEIDPKELPNEIEYGICRYGEVGTTSLDN 728
G +V+ +F+G+K D IDP L IE I GE T LD
Sbjct: 842 GD-----------------SVHREFIGVKNSDNIDPVTLQLNIEKKIRSNGEAALT-LDR 883
Query: 729 EMRKHL-SNASTEVNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVNFQQVSSLLGQQDLE 905
+M +L S S+ + K L +G+LKP KNC SLMTT+GAKG MVNFQQ+SS LGQQ+LE
Sbjct: 884 KMTSNLNSRTSSGILKKLLSEGILKPSGKNCISLMTTSGAKGSMVNFQQISSHLGQQELE 943
Query: 906 GKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHCMAGREGLVDTAVKT 1085
GKRVPRMVSGKTLP F PWD SPRAGGFI D FLT LHPQEYYFHCMAGREGLVDTAVKT
Sbjct: 944 GKRVPRMVSGKTLPCFPPWDCSPRAGGFIIDRFLTALHPQEYYFHCMAGREGLVDTAVKT 1003
Query: 1086 SRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQTSFISKFKALEENH 1265
SRSGYLQRCL+KNLECLKVCYDHTVRDADGSIIQF YGEDGVDVHQTSFI++F AL N
Sbjct: 1004 SRSGYLQRCLMKNLECLKVCYDHTVRDADGSIIQFHYGEDGVDVHQTSFITEFGALSTNK 1063
Query: 1266 QILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVPEKKKHIDDEDFMKLMNHKYFSSL 1445
+++ + LD+S+ YI LP LE KA +F K ++ DF++LM HKY S L
Sbjct: 1064 ELVFSNYCRQLDRSSPYINKLPEALEGKAEKFSK--QRNLGSMEQADFLRLMEHKYVSCL 1121
Query: 1446 AQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASVNIKTPIM 1625
AQPGEPVGVLA+QSVGEP+TQMTLNTFHLAGRGEMNVTLGIPRLQEILM A+ +IKTP M
Sbjct: 1122 AQPGEPVGVLASQSVGEPATQMTLNTFHLAGRGEMNVTLGIPRLQEILMAAARDIKTPFM 1181
Query: 1626 TCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYVGL-----RHHLYSRVYTLVMNLYRP 1790
TCPL +KS + A LA LKK+TV DI +++ V + +Y LVM LY+
Sbjct: 1182 TCPLRHDKSMKD-AICLADKLKKITVADIIKSMKVSVVPVTVLGGQVCSIYKLVMKLYKS 1240
Query: 1791 ASN---SGISLKDYKETLTIQFVRELEDAIHNQINAIKRMHGIQAFDQLSQSKASKETDE 1961
+ I+L D++ETL + FVRELEDAI N + + ++ GI+ F QS S +++
Sbjct: 1241 KQYPEYTDITLDDWEETLRVNFVRELEDAIQNHMTLLSKISGIKKFKTDPQSNYSNSSED 1300
Query: 1962 EVSG-----MRGEENDDD----GDVSXXXXXXXXXXXXQKRKRQSTDEVDYDDASEDEPN 2114
S +G+ NDDD G V QKRK Q TDEVDY+D E+E +
Sbjct: 1301 AHSNGSESEKKGQNNDDDDEDGGGVEDTEGYEDLGSDAQKRKLQGTDEVDYEDGPEEETH 1360
Query: 2115 EGVLSTGFEQEKENGNCLDTEMDGDDVSRNSQDAEMDGDDDASNLPSESQSPXXXXXXXX 2294
+G LS E ++ DG DV N + +++ L S+S
Sbjct: 1361 DGELSEEIEGDE----------DGSDVDANENYNNVTDANNSEGLEKPSKSKTIDEKQNL 1410
Query: 2295 XXXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXDEDPHILLQQVALNVAKKVY 2474
+ + K DR+I V +PHILL Q+A AKKV
Sbjct: 1411 KREKKKS----EPTTKKYDRAIFVEAKGKHFEIHFRFTG---EPHILLTQIAQRTAKKVC 1463
Query: 2475 YQ 2480
Q
Sbjct: 1464 IQ 1465
>ref|XP_007028853.1| Nuclear RNA polymerase A1, putative isoform 1 [Theobroma cacao]
gi|508717458|gb|EOY09355.1| Nuclear RNA polymerase A1,
putative isoform 1 [Theobroma cacao]
Length = 1665
Score = 726 bits (1874), Expect = 0.0
Identities = 425/846 (50%), Positives = 527/846 (62%), Gaps = 25/846 (2%)
Frame = +3
Query: 18 SFSCKPGQKVCL-VSEDEMQTLQPAILKPEPLWTGKQVITAVLNHITKGHPPFTVEKEGK 194
SFS KPGQKV + SE+ M + PAILKP+PLWTGKQVI++VL+HIT+G PPFTV K K
Sbjct: 686 SFSGKPGQKVFVSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSHITRGRPPFTVGKTAK 745
Query: 195 IPREYFGSNTGEDDLSVE---------RKTSXXXXXXXXXXXXXILYVSKNDLVRGVIDK 347
IPR++F + ++ S +K + + +NDLVRGVIDK
Sbjct: 746 IPRDFFRNRRNKNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEKILIYRNDLVRGVIDK 805
Query: 348 AQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYRDIERKQ 527
AQF YGLVHTVQELYG TAGILLS FSRLFTVFLQMHGFTCGVDDLLI++ +DIERK+
Sbjct: 806 AQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGVDDLLIMEDKDIERKK 865
Query: 528 ELEKCQDFGXXXXXXXXXXXXXRKDIRNVYSKFLGIKYD-EIDPKELPNEIEYGICRYGE 704
+LE C+ K + + + G+K + E P EL EIE I R GE
Sbjct: 866 QLEDCE-----------------KKVTEAHYELFGVKVNSETAPTELQLEIERTIRRDGE 908
Query: 705 VGTTSLDNEMRKHLS-NASTEVNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVNFQQVSS 881
T+LD +M L+ N+S V +L +GL+K +NC SLMTT+GAKG VNFQQ+SS
Sbjct: 909 TALTALDRKMISVLNENSSKGVLTELLSEGLVKSMGENCISLMTTSGAKGSKVNFQQISS 968
Query: 882 LLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHCMAGREG 1061
LGQQ+LEGKRVPRMVSGKTLP F PWDW+ RAGGFISD FL+GL PQEYYFHCMAGREG
Sbjct: 969 FLGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFLSGLRPQEYYFHCMAGREG 1028
Query: 1062 LVDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQTSFISK 1241
LVDTAVKTSRSGYLQRCLIKNLECLK+ YDHTVRDADGSI+QF YGEDG+DVHQTSFI+K
Sbjct: 1029 LVDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQFIYGEDGIDVHQTSFIAK 1088
Query: 1242 FKALEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVPEKKKH--IDDEDFMK 1415
F+AL N ++ EK L + + + LP L KA +FI+ +K +H I +DF+
Sbjct: 1089 FEALALNQDMMSEKLCSQLGEPDDSDKILPDGLRSKAEQFIREEIKKYQHQKIKPKDFLN 1148
Query: 1416 LMNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMT 1595
L+ K+ SSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMT
Sbjct: 1149 LLKLKFLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMT 1208
Query: 1596 ASVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYVGLRHHLYSR-----V 1760
AS++I+TP+MTCPL K K T E A LA +KK+TV DI E++ V + +
Sbjct: 1209 ASIDIRTPVMTCPLHKGK-TKEDALCLANKMKKITVADILESMEVSVAPFAVDNGDICSI 1267
Query: 1761 YTLVMNLYRP---ASNSGISLKDYKETLTIQFVRELEDAIHNQINAIKRMHGIQAFDQLS 1931
Y L M L +P NS I++KD + L + F+RELEDAI N + + ++ GI+ F S
Sbjct: 1268 YKLKMMLGKPDKYFENSDITVKDCEHILKVVFLRELEDAIQNHLVLLSKISGIKKFMPDS 1327
Query: 1932 QSKASKETDEEVSGMRGEE--NDDDGDVSXXXXXXXXXXXXQKRKRQSTDEVDYDDASED 2105
Q AS E DE+VS R E NDDD D D+ D ++ +ED
Sbjct: 1328 QRNASNEMDEDVSEGRSRETKNDDDDD---------------------DDDADDEERAED 1366
Query: 2106 -EPNEGVLSTGFEQEKENGNCLDTEMDGDDVSRNSQDAEMDGDDDASNLPSESQSPXXXX 2282
+ L + + ++ + M G D ++ ++ SN S +
Sbjct: 1367 LGASLAALESEIDMSEDETGTIQINMIGSDNGKDEISQSSPNLENRSNPKSREEK----- 1421
Query: 2283 XXXXXXXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXDEDPHILLQQVALNVA 2462
+ RK++DR+I +PHILL Q+A A
Sbjct: 1422 ---TGSEPKRKKMKAKFVRKESDRAI---FNAIRGLCFEVHFKLKNEPHILLAQIAEKTA 1475
Query: 2463 KKVYYQ 2480
KKVY Q
Sbjct: 1476 KKVYIQ 1481
>ref|XP_004299740.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Fragaria
vesca subsp. vesca]
Length = 1673
Score = 725 bits (1871), Expect = 0.0
Identities = 427/850 (50%), Positives = 528/850 (62%), Gaps = 31/850 (3%)
Frame = +3
Query: 18 SFSCKPGQKVCLV-SEDEMQTLQPAILKPEPLWTGKQVITAVLNHITKGHPPFTVEKEGK 194
+FS KPGQKV + SED MQ PAI KP W GKQ+IT +LN IT G PP T EKE K
Sbjct: 668 TFSGKPGQKVLMSNSEDAMQLPLPAIWKPVRKWPGKQIITTLLNRITSGSPPLTFEKEAK 727
Query: 195 IPREYFGSNTG-EDDLSVE-----------RKTSXXXXXXXXXXXXXILYVSKNDLVRGV 338
+P +F T E++ S + ++ L + KN+LVRGV
Sbjct: 728 LPSGFFNCKTPVEEERSAKGHRAKEKQSRIKEAGKDDSREIEEPDESKLLIYKNNLVRGV 787
Query: 339 IDKAQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYRDIE 518
IDK QFG YGLVH V ELYG + AG LLSAFSRL+TV+LQMHGFTCGVDDLL+L+ +D +
Sbjct: 788 IDKNQFGDYGLVHNVHELYGSEAAGKLLSAFSRLYTVYLQMHGFTCGVDDLLLLQSKDKK 847
Query: 519 RKQELEKCQDFGXXXXXXXXXXXXXRKDIRNVYSKFLGIKYDEIDPKE-LPNEIEYGICR 695
K++LE C++ G V +F+G++ +E L ++IE +
Sbjct: 848 MKEQLESCEELG-----------------EKVIREFIGVRQNERKGALILQSDIEEFLRN 890
Query: 696 YGEVGTTSLDNEMRKHLSN--ASTEVNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVNFQ 869
GE + LD +M L+ ++++V K LF KGL KP KNC LMT++GAKGG+ N Q
Sbjct: 891 NGESVSEMLDRKMTSELNKKISNSDVFKQLFQKGLSKPSFKNCMYLMTSSGAKGGVANLQ 950
Query: 870 QVSSLLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHCMA 1049
Q+++ LGQQ+LEGKRVP+MVSGKTLP F PWDWSPRAGGFI D FLTGLHPQEYYFHCMA
Sbjct: 951 QIAAYLGQQELEGKRVPQMVSGKTLPCFPPWDWSPRAGGFIIDRFLTGLHPQEYYFHCMA 1010
Query: 1050 GREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQTS 1229
GREGLVDTAVKTSRSGYLQRCLIKNLECLKV YD+TVRDADGSIIQF YGEDG+DVH TS
Sbjct: 1011 GREGLVDTAVKTSRSGYLQRCLIKNLECLKVSYDYTVRDADGSIIQFRYGEDGIDVHLTS 1070
Query: 1230 FISKFKALEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVPEKKKHIDDEDF 1409
FI KF+ L N ++ ++F +DK N YI+ LPP L++KA + K+K+ +
Sbjct: 1071 FIQKFEKLANNKEMFDKRFGREIDKFNPYIDELPPALKRKAEMSGPDLSLKEKNAN---- 1126
Query: 1410 MKLMNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEIL 1589
+KLM HK+ SSLAQPGEPVG+LAAQSVGEPSTQMTLNTFH AGR EMNVTLGIPRLQEIL
Sbjct: 1127 LKLMEHKFLSSLAQPGEPVGILAAQSVGEPSTQMTLNTFHNAGRSEMNVTLGIPRLQEIL 1186
Query: 1590 MTASVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYVGLR-----HHLYS 1754
MTAS +IKTP+MTCPL K+ D AK LA LK++TV DI E++ V ++ H
Sbjct: 1187 MTASNDIKTPVMTCPLRMGKAED--AKSLAGRLKRITVADIIESMKVNIKPFTHQDHQTC 1244
Query: 1755 RVYTLVMNLYRPASNSGISLKDYKETLTIQFVRELEDAIHNQINAIKRMHGIQAFDQLSQ 1934
RVY L M + P S S +D++E L ++FVR LEDAI N + + ++ GI+ S
Sbjct: 1245 RVYELEMTFFIPEHLSKFS-EDWEELLKVKFVRALEDAIQNHLVLLSKISGIKDIKADSL 1303
Query: 1935 SKASKETDEE----VSGMRGEENDDDGDVSXXXXXXXXXXXXQKRKRQSTDEVDYDDASE 2102
KAS ETDE+ +S GE DDD QK+KRQ TDE++YDD E
Sbjct: 1304 PKASNETDEDISFNISQHEGEGGDDDNVDDSGEGVEDFGLDAQKQKRQGTDEMEYDDDWE 1363
Query: 2103 DEPNEGVLSTGFEQEKENGNCLDTEMDGDDVSRNSQDAEMDGDDDASNLPSESQS----- 2267
DE NEG S FE E +NG LD E+D D V+ G DA++ ES S
Sbjct: 1364 DEFNEGRQSDEFENEIDNGE-LDVEIDKDGVT---------GISDANDKMQESCSTGGIS 1413
Query: 2268 -PXXXXXXXXXXXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXDEDPHILLQQ 2444
P +L RK+ DR+ V +PHILL Q
Sbjct: 1414 KPHSKGKKTKSRDKIKKKTSAKLVRKEYDRATFV---SAKGFHFEIHFKFTNEPHILLDQ 1470
Query: 2445 VALNVAKKVY 2474
+A A+ VY
Sbjct: 1471 IAQKTARNVY 1480
>ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
lycopersicum]
Length = 1677
Score = 721 bits (1860), Expect = 0.0
Identities = 422/841 (50%), Positives = 524/841 (62%), Gaps = 30/841 (3%)
Frame = +3
Query: 42 KVCLVS-EDEMQTLQPAILKPEPLWTGKQVITAVLNHITKGHPPFTVEKEGKIPREYFGS 218
KV +V E +QT+ PA+ KP+PLWTGKQVITA+LNH+T G PP TV+ +GKIP YF S
Sbjct: 694 KVSIVDFEGVVQTVLPAVWKPKPLWTGKQVITALLNHLTNGCPPCTVKNKGKIPYAYFLS 753
Query: 219 NTGEDDLSVERKTSXXXXXXXXXXXXXILYVSKNDLVRGVIDKAQFGSYGLVHTVQELYG 398
+ + + + KN+LVRGVIDKAQFG +GLVHT+QELYG
Sbjct: 754 ESRLVEYQSREEQEDRTAENE-------FLIWKNELVRGVIDKAQFGKFGLVHTIQELYG 806
Query: 399 PKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYRDIERKQELEKCQDFGXXXXXXXX 578
AGILLSA SRLFT+FLQ+HGFTCG+DDL+IL + DI RK+ELE D G
Sbjct: 807 SNKAGILLSALSRLFTIFLQLHGFTCGIDDLVILPHYDIRRKEELEG-DDVG-------- 857
Query: 579 XXXXXRKDIRNVYSKFLGIKYDEIDPKELPNEIEYGICRYGEVGTTSLDNEMRKHLSNAS 758
+ F+ K EI P EL EIE I EV T +LD +M+ L+N
Sbjct: 858 ---------EEAHCDFVKFKRGEIGPLELQLEIEKAISSNKEVATAALDMKMKNKLANKG 908
Query: 759 TEVNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVNFQQVSSLLGQQDLEGKRVPRMVSGK 938
++ NK+L +KGLLKPFP+NC +LMT TGAKG VNFQQ+SS LGQQ+LEGKRVPRMVSGK
Sbjct: 909 SQFNKELLLKGLLKPFPRNCIALMTITGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGK 968
Query: 939 TLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLI 1118
TLP F WD + RAGG++SD FL+GL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLI
Sbjct: 969 TLPCFPAWDCASRAGGYVSDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLI 1028
Query: 1119 KNLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQTSFISKFKALEENHQILREKFLHHL 1298
KNLE LKVCYD+TVRDADGSIIQF YGEDGVDVH+TSF+ FKAL+ N + + +K L H
Sbjct: 1029 KNLESLKVCYDYTVRDADGSIIQFYYGEDGVDVHRTSFLKNFKALKNNQETICQK-LRHG 1087
Query: 1299 DKSNSYIEHLPPKLEKKAREFIK----------GVPEKKKHI------DDEDFMKLMNHK 1430
K NSYIE LP L +K + F + G+ KK+ + ++ DF++L+ K
Sbjct: 1088 CKLNSYIEKLPDGLGEKVKHFWESKTKKLEKKLGMLVKKEEMVKQLKEEEADFLELVGQK 1147
Query: 1431 YFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASVNI 1610
YFSSLA GEPVGVLA QSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAS I
Sbjct: 1148 YFSSLADSGEPVGVLAGQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASEAI 1207
Query: 1611 KTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYV-----GLRHHLYSRVYTLVM 1775
KTPIMTCP L KS ++ A+ L +KK+TV D+ E++ V + +H S++Y L +
Sbjct: 1208 KTPIMTCPFLGWKSKND-AQSLLAKVKKITVADMIESMEVKLLPLSIYNHQVSQLYKLTV 1266
Query: 1776 NLYRPASNSGISLKDYKETLTIQFVRELEDAIHNQINAIKRMHGIQAFDQLSQSKASKET 1955
L + + +S +D + TL F+RELEDAI + + + +++GIQ F S+S S ET
Sbjct: 1267 KLKK---HDFVSSEDCEYTLKFVFLRELEDAIESHLALLSKINGIQNFKTSSESVDSDET 1323
Query: 1956 DEEVSGMRGEEND-DDGDVSXXXXXXXXXXXXQKRKRQSTDEVDYDDASEDEPNEGVLST 2132
+E S R EE DD D QKRK+Q+TDE+DYDD ++ E +
Sbjct: 1324 EENASSTRREEEMLDDDDDDEDERTEDLSSDAQKRKQQTTDEMDYDDDEDEAEAEAEATA 1383
Query: 2133 GFEQEK-------ENGNCLDTEMDGDDVSRNSQDAEMDGDDDASNLPSESQSPXXXXXXX 2291
E EK +NG D E +GD + ++D SN +
Sbjct: 1384 EIEDEKSEQTDEIDNG---DEEENGDRGNEEHTSKLQSTEEDISNTKTSKSK-------- 1432
Query: 2292 XXXXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXDEDPHILLQQVALNVAKKV 2471
+ S+KD+DR + V +PHILL QVA AKKV
Sbjct: 1433 TKTTVKQKKKKERRSKKDSDRCVFVDVEGLHFEVHFRFV---NEPHILLAQVAQKTAKKV 1489
Query: 2472 Y 2474
Y
Sbjct: 1490 Y 1490
>ref|NP_191325.1| nuclear RNA polymerase A1 [Arabidopsis thaliana]
gi|4678281|emb|CAB41189.1| DNA-directed RNA polymerase I
190K chain-like protein [Arabidopsis thaliana]
gi|332646163|gb|AEE79684.1| nuclear RNA polymerase A1
[Arabidopsis thaliana]
Length = 1670
Score = 719 bits (1855), Expect = 0.0
Identities = 424/843 (50%), Positives = 535/843 (63%), Gaps = 22/843 (2%)
Frame = +3
Query: 18 SFSCKPGQKVCLVSED-EMQTLQPAILKPEPLWTGKQVITAVLNHITKGHPPFTVEKEGK 194
+FS + G+KV + + D E+ T+ PAILKP PLWTGKQVITAVLN ITKGHPPFTVEK K
Sbjct: 683 TFSGRSGKKVMVSASDAELLTVTPAILKPVPLWTGKQVITAVLNQITKGHPPFTVEKATK 742
Query: 195 IPREYFGSNTGE-----DDLSVERKTSXXXXXXXXXXXXXILYVSKNDLVRGVIDKAQFG 359
+P ++F + E DL+ +++ L++ KN+ V GVIDKAQF
Sbjct: 743 LPVDFFKCRSREVKPNSGDLTKKKEIDESWKQNLNEDK---LHIRKNEFVCGVIDKAQFA 799
Query: 360 SYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYRDIERKQELEK 539
YGLVHTV ELYG AG LLS FSRLFTVFLQ HGFTCGVDDL+ILK D ER ++L++
Sbjct: 800 DYGLVHTVHELYGSNAAGNLLSVFSRLFTVFLQTHGFTCGVDDLIILKDMDEERTKQLQE 859
Query: 540 CQDFGXXXXXXXXXXXXXRKDIRNVYSKFLGIKYD-EIDPKELPNEIEYGICRYGEVGTT 716
C++ G V K GI D +IDP+++ + IE + GE
Sbjct: 860 CENVG-----------------ERVLRKTFGIDVDVQIDPQDMRSRIERILYEDGESALA 902
Query: 717 SLDNEMRKHLSNASTE-VNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVNFQQVSSLLGQ 893
SLD + +L+ S++ V DL GLLK +NC SLMT +GAKG VNFQQ+SS LGQ
Sbjct: 903 SLDRSIVNYLNQCSSKGVMNDLLSDGLLKTPGRNCISLMTISGAKGSKVNFQQISSHLGQ 962
Query: 894 QDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHCMAGREGLVDT 1073
QDLEGKRVPRMVSGKTLP F PWDWSPRAGGFISD FL+GL PQEYYFHCMAGREGLVDT
Sbjct: 963 QDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFISDRFLSGLRPQEYYFHCMAGREGLVDT 1022
Query: 1074 AVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQTSFISKFKAL 1253
AVKTSRSGYLQRCL+KNLE LKV YD TVRDADGSIIQF YGEDGVDVH++SFI KFK L
Sbjct: 1023 AVKTSRSGYLQRCLMKNLESLKVNYDCTVRDADGSIIQFQYGEDGVDVHRSSFIEKFKEL 1082
Query: 1254 EENHQILREKFLHH-LDKSNSYIEHLPPKLEKKAREFIKGVPEKK----KHIDDEDFMKL 1418
N ++ +K L ++SYI LP L+K A +F++ +P + K + E+ +KL
Sbjct: 1083 TINQDMVLQKCSEDMLSGASSYISDLPISLKKGAEKFVEAMPMNERIASKFVRQEELLKL 1142
Query: 1419 MNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA 1598
+ K+F+SLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA
Sbjct: 1143 VKSKFFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA 1202
Query: 1599 SVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYVG-LRHHLYSR----VY 1763
+ NIKTPIMTCPLLK K T E A + L+K+TV DI +++ + + + +Y ++
Sbjct: 1203 AANIKTPIMTCPLLKGK-TKEDANDITDRLRKITVADIIKSMELSVVPYTVYENEVCSIH 1261
Query: 1764 TLVMNLYRP---ASNSGISLKDYKETLTIQFVRELEDAIHNQINAIKRMHGIQAFDQLSQ 1934
L +NLY+P ++ I+ +D++ET+ F+R+LEDAI + + R+ GI + ++
Sbjct: 1262 KLKINLYKPEHYPKHTDITEEDWEETMRAVFLRKLEDAIETHMKMLHRIRGIH--NDVTG 1319
Query: 1935 SKASKETDEEVSGMRGEENDDDG-DVSXXXXXXXXXXXXQKRKRQSTDEVDYDDASEDEP 2111
A ETD + S + G++N+DDG D QK+K+Q TDE+DY++ SEDE
Sbjct: 1320 PIAGNETDNDDS-VSGKQNEDDGDDDGEGTEVDDLGSDAQKQKKQETDEMDYEENSEDET 1378
Query: 2112 NEGVLSTGFEQEKENGNCLDTEMDGDDVSRNSQDAEMDGDDDASNLPSESQSPXXXXXXX 2291
NE +G E D EMD + ++D E+ +D ES P
Sbjct: 1379 NEPSSISGVE---------DPEMDSE-----NEDTEV-SKEDTPEPQEESMEPQKEVKGV 1423
Query: 2292 XXXXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXDEDPHILLQQVALNVAKKV 2471
+ R +DR I V +DPHILL Q+A A+KV
Sbjct: 1424 KNVKEQSKKKRRKFVRAKSDRHIFV--KGEGEKFEVHFKFATDDPHILLAQIAQQTAQKV 1481
Query: 2472 YYQ 2480
Y Q
Sbjct: 1482 YIQ 1484