BLASTX nr result

ID: Paeonia25_contig00012974 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia25_contig00012974
         (2538 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI29879.3| unnamed protein product [Vitis vinifera]              830   0.0  
ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I sub...   830   0.0  
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni...   768   0.0  
ref|XP_007203063.1| hypothetical protein PRUPE_ppa000153mg [Prun...   758   0.0  
ref|XP_007028855.1| Nuclear RNA polymerase A1 isoform 3 [Theobro...   755   0.0  
ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Me...   751   0.0  
ref|XP_007028856.1| Nuclear RNA polymerase A1 isoform 4 [Theobro...   751   0.0  
ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform ...   751   0.0  
ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citr...   747   0.0  
ref|XP_007145632.1| hypothetical protein PHAVU_007G255400g [Phas...   745   0.0  
ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I sub...   744   0.0  
ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I sub...   739   0.0  
ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   739   0.0  
ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I sub...   736   0.0  
ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I sub...   736   0.0  
ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I sub...   733   0.0  
ref|XP_007028853.1| Nuclear RNA polymerase A1, putative isoform ...   726   0.0  
ref|XP_004299740.1| PREDICTED: DNA-directed RNA polymerase I sub...   725   0.0  
ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I sub...   721   0.0  
ref|NP_191325.1| nuclear RNA polymerase A1 [Arabidopsis thaliana...   719   0.0  

>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
          Length = 1669

 Score =  830 bits (2144), Expect = 0.0
 Identities = 472/846 (55%), Positives = 567/846 (67%), Gaps = 22/846 (2%)
 Frame = +3

Query: 3    TSSTGSFSCKPGQKVCLV-SEDEMQTLQPAILKPEPLWTGKQVITAVLNHITKGHPPFTV 179
            +S +GSF  KPG+KV ++ SEDEMQ L PAI KPEPLW+GKQVITAVLNHIT+G  PFT 
Sbjct: 673  SSGSGSFIGKPGKKVSVLDSEDEMQPLLPAIWKPEPLWSGKQVITAVLNHITRGRKPFTT 732

Query: 180  EKEGKIPREYFGSNT-------GEDDLSVERKTSXXXXXXXXXXXXXILYVSKNDLVRGV 338
            EK+GKIPREYFGS         G+D  S  RK                L + KN+LVRGV
Sbjct: 733  EKDGKIPREYFGSEIDEKKSGKGKDPGSDRRKEKRIEKKHGEYK----LLIHKNELVRGV 788

Query: 339  IDKAQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYRDIE 518
            IDKAQF  YGLVH VQELYG  TAGILLS  SRLFTVFLQMHGFTCGVDDLLI    DI 
Sbjct: 789  IDKAQFDKYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDDLLISPNYDIA 848

Query: 519  RKQELEKCQDFGXXXXXXXXXXXXXRKDIRNVYSKFLGIKYDEIDPKELPNEIEYGICRY 698
            RK EL+K ++ G                   V+ KF+G  + +IDP +L  E+E  I   
Sbjct: 849  RKIELDKSENIGEL-----------------VHCKFIGSNHGKIDPVKLQVEVEKIILSN 891

Query: 699  GEVGTTSLDNEMRKHLSNASTEVNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVNFQQVS 878
            GE   T LD  M+  L+  +++VNKDL +KGL+KPFPKNC SLMTTTGAKG  VNF Q+S
Sbjct: 892  GEAAITRLDRMMKNELNELTSKVNKDLLLKGLVKPFPKNCLSLMTTTGAKGSTVNFSQIS 951

Query: 879  SLLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHCMAGRE 1058
            S LGQQDLEGKRVPRMVSGKTLP F PWD + RAGGFISD FLTGLHPQEYYFHCMAGRE
Sbjct: 952  SFLGQQDLEGKRVPRMVSGKTLPCFPPWDCAARAGGFISDRFLTGLHPQEYYFHCMAGRE 1011

Query: 1059 GLVDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQTSFIS 1238
            GLVDTAVKTSRSGYLQRCLIKNLECLKVCYD+TVRD+DGSI+QF+YG+DGVDVHQTSFI+
Sbjct: 1012 GLVDTAVKTSRSGYLQRCLIKNLECLKVCYDYTVRDSDGSIVQFNYGDDGVDVHQTSFIT 1071

Query: 1239 KFKALEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVPEKKKHIDD----ED 1406
            +F+AL  N +++ EKF     K N YI+ LP +L KK ++FI+G  E+++  D+    +D
Sbjct: 1072 EFEALAVNEEVVCEKFGQD-GKFNGYIQKLPKELRKKTKKFIEGFMEERQDFDNMKKQKD 1130

Query: 1407 FMKLMNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1586
            F+ L+  KY SSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGE+NVTLGIPRLQEI
Sbjct: 1131 FVNLVKQKYISSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQEI 1190

Query: 1587 LMTASVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYVGL-----RHHLY 1751
            LMTA+ +IKTPIMTCPL   +S D+ A+ LA  LKKVTV DITE++ V +     + H  
Sbjct: 1191 LMTAANDIKTPIMTCPLQMGRSKDD-AERLAAKLKKVTVADITESMEVSIVPFTVQDHQT 1249

Query: 1752 SRVYTLVMNLYRPA---SNSGISLKDYKETLTIQFVRELEDAIHNQINAIKRMHGIQAFD 1922
              +Y L M LY PA    ++GISL+D +ETL   FVRELEDAI N +  + ++ GI+ F 
Sbjct: 1250 CSIYKLKMKLYEPALYPPHTGISLEDCEETLEAVFVRELEDAIQNHLLLLSKISGIKNFL 1309

Query: 1923 QLSQSKASKETDEEVS--GMRGEENDDDGDVSXXXXXXXXXXXXQKRKRQSTDEVDYDDA 2096
              S+S ASKETDE+ S  G+ G   D+D D              QKRK+Q++DE+DY D 
Sbjct: 1310 PDSRSMASKETDEDASGDGLAGGNGDEDDDGEDDGGAEDLGLDAQKRKQQASDEMDYGD- 1368

Query: 2097 SEDEPNEGVLSTGFEQEKENGNCLDTEMDGDDVSRNSQDAEMDGDDDASNLPSESQSPXX 2276
            SE EP+EG  S G  +E      +D   D  ++S N +    D  D+ S +PS+S+S   
Sbjct: 1369 SEGEPDEGEPSAGLTEE------IDLVEDEVEISNNEEVGISDPKDEDSKVPSKSKS--- 1419

Query: 2277 XXXXXXXXXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXDEDPHILLQQVALN 2456
                             +  +KD DR+I V                  +PHILL Q+A  
Sbjct: 1420 -SKNKKAKTEAKRKKRFRAIKKDFDRAILV---KAKGTYFEVHFRFTNEPHILLAQIAQK 1475

Query: 2457 VAKKVY 2474
             A KVY
Sbjct: 1476 AANKVY 1481


>ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
            vinifera]
          Length = 1740

 Score =  830 bits (2144), Expect = 0.0
 Identities = 472/846 (55%), Positives = 567/846 (67%), Gaps = 22/846 (2%)
 Frame = +3

Query: 3    TSSTGSFSCKPGQKVCLV-SEDEMQTLQPAILKPEPLWTGKQVITAVLNHITKGHPPFTV 179
            +S +GSF  KPG+KV ++ SEDEMQ L PAI KPEPLW+GKQVITAVLNHIT+G  PFT 
Sbjct: 744  SSGSGSFIGKPGKKVSVLDSEDEMQPLLPAIWKPEPLWSGKQVITAVLNHITRGRKPFTT 803

Query: 180  EKEGKIPREYFGSNT-------GEDDLSVERKTSXXXXXXXXXXXXXILYVSKNDLVRGV 338
            EK+GKIPREYFGS         G+D  S  RK                L + KN+LVRGV
Sbjct: 804  EKDGKIPREYFGSEIDEKKSGKGKDPGSDRRKEKRIEKKHGEYK----LLIHKNELVRGV 859

Query: 339  IDKAQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYRDIE 518
            IDKAQF  YGLVH VQELYG  TAGILLS  SRLFTVFLQMHGFTCGVDDLLI    DI 
Sbjct: 860  IDKAQFDKYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDDLLISPNYDIA 919

Query: 519  RKQELEKCQDFGXXXXXXXXXXXXXRKDIRNVYSKFLGIKYDEIDPKELPNEIEYGICRY 698
            RK EL+K ++ G                   V+ KF+G  + +IDP +L  E+E  I   
Sbjct: 920  RKIELDKSENIGEL-----------------VHCKFIGSNHGKIDPVKLQVEVEKIILSN 962

Query: 699  GEVGTTSLDNEMRKHLSNASTEVNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVNFQQVS 878
            GE   T LD  M+  L+  +++VNKDL +KGL+KPFPKNC SLMTTTGAKG  VNF Q+S
Sbjct: 963  GEAAITRLDRMMKNELNELTSKVNKDLLLKGLVKPFPKNCLSLMTTTGAKGSTVNFSQIS 1022

Query: 879  SLLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHCMAGRE 1058
            S LGQQDLEGKRVPRMVSGKTLP F PWD + RAGGFISD FLTGLHPQEYYFHCMAGRE
Sbjct: 1023 SFLGQQDLEGKRVPRMVSGKTLPCFPPWDCAARAGGFISDRFLTGLHPQEYYFHCMAGRE 1082

Query: 1059 GLVDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQTSFIS 1238
            GLVDTAVKTSRSGYLQRCLIKNLECLKVCYD+TVRD+DGSI+QF+YG+DGVDVHQTSFI+
Sbjct: 1083 GLVDTAVKTSRSGYLQRCLIKNLECLKVCYDYTVRDSDGSIVQFNYGDDGVDVHQTSFIT 1142

Query: 1239 KFKALEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVPEKKKHIDD----ED 1406
            +F+AL  N +++ EKF     K N YI+ LP +L KK ++FI+G  E+++  D+    +D
Sbjct: 1143 EFEALAVNEEVVCEKFGQD-GKFNGYIQKLPKELRKKTKKFIEGFMEERQDFDNMKKQKD 1201

Query: 1407 FMKLMNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI 1586
            F+ L+  KY SSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGE+NVTLGIPRLQEI
Sbjct: 1202 FVNLVKQKYISSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQEI 1261

Query: 1587 LMTASVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYVGL-----RHHLY 1751
            LMTA+ +IKTPIMTCPL   +S D+ A+ LA  LKKVTV DITE++ V +     + H  
Sbjct: 1262 LMTAANDIKTPIMTCPLQMGRSKDD-AERLAAKLKKVTVADITESMEVSIVPFTVQDHQT 1320

Query: 1752 SRVYTLVMNLYRPA---SNSGISLKDYKETLTIQFVRELEDAIHNQINAIKRMHGIQAFD 1922
              +Y L M LY PA    ++GISL+D +ETL   FVRELEDAI N +  + ++ GI+ F 
Sbjct: 1321 CSIYKLKMKLYEPALYPPHTGISLEDCEETLEAVFVRELEDAIQNHLLLLSKISGIKNFL 1380

Query: 1923 QLSQSKASKETDEEVS--GMRGEENDDDGDVSXXXXXXXXXXXXQKRKRQSTDEVDYDDA 2096
              S+S ASKETDE+ S  G+ G   D+D D              QKRK+Q++DE+DY D 
Sbjct: 1381 PDSRSMASKETDEDASGDGLAGGNGDEDDDGEDDGGAEDLGLDAQKRKQQASDEMDYGD- 1439

Query: 2097 SEDEPNEGVLSTGFEQEKENGNCLDTEMDGDDVSRNSQDAEMDGDDDASNLPSESQSPXX 2276
            SE EP+EG  S G  +E      +D   D  ++S N +    D  D+ S +PS+S+S   
Sbjct: 1440 SEGEPDEGEPSAGLTEE------IDLVEDEVEISNNEEVGISDPKDEDSKVPSKSKS--- 1490

Query: 2277 XXXXXXXXXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXDEDPHILLQQVALN 2456
                             +  +KD DR+I V                  +PHILL Q+A  
Sbjct: 1491 -SKNKKAKTEAKRKKRFRAIKKDFDRAILV---KAKGTYFEVHFRFTNEPHILLAQIAQK 1546

Query: 2457 VAKKVY 2474
             A KVY
Sbjct: 1547 AANKVY 1552


>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
            communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
            polymerase I largest subunit, putative [Ricinus communis]
          Length = 1686

 Score =  768 bits (1982), Expect = 0.0
 Identities = 450/851 (52%), Positives = 540/851 (63%), Gaps = 25/851 (2%)
 Frame = +3

Query: 3    TSSTGSFSCKPGQKVCLV-SEDEMQTLQPAILKPEPLWTGKQVITAVLNHITKGHPPFTV 179
            T    SF  +PGQKV    SEDE+QTL PAI KP+PLWTGKQVITA+LNHIT  HPPFTV
Sbjct: 674  TVGPNSFHGRPGQKVLWSRSEDEIQTLPPAIWKPKPLWTGKQVITAILNHITSDHPPFTV 733

Query: 180  EKEGKIPREYFGSNTGEDDLSVERKTSXXXXXXXXXXXXXILYVSKNDLVRGVIDKAQFG 359
            EK+ KIP  +F S   ED    E K+              +L V KN+LVRGVIDK QFG
Sbjct: 734  EKDAKIPSNFFKSRANEDKPCQEEKSDKDAPAEKEPDEEKML-VYKNELVRGVIDKGQFG 792

Query: 360  SYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYRDIERKQELEK 539
             YGLVHTV EL G  TAGILLS  SRLFT +LQMHGFTCGVDDLLIL  +D ERK++LE 
Sbjct: 793  EYGLVHTVHELLGSHTAGILLSVLSRLFTAYLQMHGFTCGVDDLLILTNKDEERKKQLEW 852

Query: 540  CQDFGXXXXXXXXXXXXXRKDIRNVYSKFLGIKYDEI--DPKELPNEIEYGICRYGEVGT 713
            C+  G                   V+  F+GIK ++I  DP  +   IE  I   G+   
Sbjct: 853  CEKSGEA-----------------VHRNFIGIKDEKIKIDPVAMQLNIEKTIRSDGDSAL 895

Query: 714  TSLDNEMRKHLSN-ASTEVNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVNFQQVSSLLG 890
              LD +M   L+   S+ V  +L   GLLKP  KNC SLMTT+GAKG  VNFQQ+SS LG
Sbjct: 896  AYLDRQMSNELNTKTSSGVISNLLSDGLLKPSGKNCISLMTTSGAKGSKVNFQQISSFLG 955

Query: 891  QQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHCMAGREGLVD 1070
            QQ+LEGKRVPRMVSGKTLP F PWDW+ R+GG+I+D FLTGL PQEYYFHCMAGREGLVD
Sbjct: 956  QQELEGKRVPRMVSGKTLPCFHPWDWAARSGGYITDRFLTGLRPQEYYFHCMAGREGLVD 1015

Query: 1071 TAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQTSFISKFKA 1250
            TAVKTSRSGYLQRCLIKNLECLK+ YDHTVRDADGS++QF YGEDGVDVHQTSFI+KFK 
Sbjct: 1016 TAVKTSRSGYLQRCLIKNLECLKIGYDHTVRDADGSVVQFYYGEDGVDVHQTSFIAKFKE 1075

Query: 1251 LEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVP----EKKKHIDDEDFMKL 1418
            L  N  ++ ++    L   NSYI  LP  L++KA  F+             +  ED   L
Sbjct: 1076 LALNQDMIYKRSGGQLGAFNSYISELPEALKEKADRFLDDFSIMGRIASNLVKREDLYNL 1135

Query: 1419 MNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA 1598
            M  K+  SLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA
Sbjct: 1136 MKQKFLLSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA 1195

Query: 1599 SVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYV-----GLRHHLYSRVY 1763
            S++IKTPIMTCP L+E  T+E A  LA  L+KVTV DI E++ V      ++     R+Y
Sbjct: 1196 SIDIKTPIMTCP-LQEGRTNEDADHLADKLRKVTVADIVESMEVSVVPFAIQDGGVCRIY 1254

Query: 1764 TLVMNLYRPA---SNSGISLKDYKETLTIQFVRELEDAIHNQINAIKRMHGIQAFDQLSQ 1934
             L M LYRPA     + IS++D++ETL + F+RELEDAI N +  + R+ GI+ F   S+
Sbjct: 1255 KLKMKLYRPAHYPQYANISVEDWEETLEVVFLRELEDAIQNHMFLLSRISGIKDFLPESR 1314

Query: 1935 SKASKETDEEVSG--MRGEENDDDGDVSXXXXXXXXXXXXQKRKRQSTDEVDYDDASEDE 2108
            S+AS E DE+V+G     EE DDD D              QKRK Q+TDE+DYDD  E+E
Sbjct: 1315 SRASGEADEDVAGDMSHREERDDDNDDDDGERADDLGLDAQKRKLQATDEMDYDDGFEEE 1374

Query: 2109 PNEGVLS-----TGFEQEKENGNCLDTEMDGDDVSRN--SQDAEMDGDDDASNLPSESQS 2267
             NEG  +     +GFE E + G+  +TE+  D +  N  S+   +       +    ++S
Sbjct: 1375 LNEGESTASEEESGFESEIDQGD-NETEISNDVMLDNEASETLPLRKPSKPKSKKKAAES 1433

Query: 2268 PXXXXXXXXXXXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXDEDPHILLQQV 2447
            P                   ++S KD DR+I V                  +PHILL ++
Sbjct: 1434 PSHGEKSKDKKKKPKAKRKSRIS-KDFDRAIFV---EARKMHFEVHFKFTNEPHILLAEI 1489

Query: 2448 ALNVAKKVYYQ 2480
            A   AKKVY Q
Sbjct: 1490 AQKTAKKVYIQ 1500


>ref|XP_007203063.1| hypothetical protein PRUPE_ppa000153mg [Prunus persica]
            gi|462398594|gb|EMJ04262.1| hypothetical protein
            PRUPE_ppa000153mg [Prunus persica]
          Length = 1612

 Score =  758 bits (1956), Expect = 0.0
 Identities = 441/859 (51%), Positives = 538/859 (62%), Gaps = 38/859 (4%)
 Frame = +3

Query: 18   SFSCKPGQKVCLV-SEDEMQTLQPAILKPEPLWTGKQVITAVLNHITKGHPPFTVEKEGK 194
            +FS KP +KV +  SE  MQ L PAI KPEPLWTGKQVITA+LNHIT+G PP TVE++ K
Sbjct: 589  AFSGKPDKKVFMFNSEGTMQPLLPAIWKPEPLWTGKQVITALLNHITRGSPPVTVERDAK 648

Query: 195  IPREYFGSNT--GEDDL-----------SVERKTSXXXXXXXXXXXXXILYVSKNDLVRG 335
            IPR +F      GED             S E+ T               L + +N+LVRG
Sbjct: 649  IPRGFFNCKNVEGEDKSGNDGQQKKRKPSKEQATDKDSSKEKEEPDENHLLIYRNNLVRG 708

Query: 336  VIDKAQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYRDI 515
            VIDKAQFG YGLVHTVQE YG  TAG LLS  S LFTV+LQMHGFTCG+DDLL+L+ +D 
Sbjct: 709  VIDKAQFGDYGLVHTVQEFYGSDTAGKLLSVLSHLFTVYLQMHGFTCGIDDLLLLESKDA 768

Query: 516  ERKQELEKCQDFGXXXXXXXXXXXXXRKDIRNVYSKFLGIK-YDEIDPKELPNEIEYGIC 692
            + K +LE C+D G                  NVY  F+ +K     DP EL   IE  I 
Sbjct: 769  KMKDQLESCEDVG-----------------ENVYRDFIEVKDVKRKDPVELQLNIENFIR 811

Query: 693  RYGEVGTTSLDNEMRKHLSN--ASTEVNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVNF 866
              GE    SLD  M   L+N  ++++V K L ++GL KP  KNC  LMTT+GAKG + N 
Sbjct: 812  SNGESALASLDRRMISQLNNKTSNSDVFKQLLLRGLSKPSVKNCIYLMTTSGAKGSVANL 871

Query: 867  QQVSSLLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHCM 1046
            QQ++S LGQQ+LEGKRVP+M+SGKTLP F PWDWS RAGGFI D FLTGLHPQEYYFHCM
Sbjct: 872  QQITSYLGQQELEGKRVPQMISGKTLPCFPPWDWSSRAGGFIIDRFLTGLHPQEYYFHCM 931

Query: 1047 AGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQT 1226
            AGREGLVDTAVKTSRSGYLQRC+IKNLECLKV YD+TVRDADGSIIQF YGEDG+DVH T
Sbjct: 932  AGREGLVDTAVKTSRSGYLQRCIIKNLECLKVSYDNTVRDADGSIIQFRYGEDGIDVHMT 991

Query: 1227 SFISKFKALEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVPEKKK-HIDDE 1403
            SFI KF++L  N ++  +K    +DK N YI+ LP  L++KA +F+  +  K+K H   E
Sbjct: 992  SFIQKFESLIANKEMFHKKGRRQMDKLNPYIKDLPLALKEKAEKFVHNLALKEKDHNFQE 1051

Query: 1404 DFMKLMNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQE 1583
            DF+KLM HKY  SLAQPGEPVGVLA QSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQE
Sbjct: 1052 DFLKLMEHKYLCSLAQPGEPVGVLAGQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQE 1111

Query: 1584 ILMTASVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYVG-----LRHHL 1748
            ILMTA+ +IKTP+MTCPL K +S +E A+ LA  LKK+TV DI E++ V      ++   
Sbjct: 1112 ILMTAANDIKTPVMTCPLQKGRSKEE-AQELADKLKKITVADIIESMKVTFVPFFIQDGQ 1170

Query: 1749 YSRVYTLVMNLYRPASNSGI---SLKDYKETLTIQFVRELEDAIHNQINAIKRMHGIQAF 1919
              R+Y L M L+ P     I   S +D++E L I FVRELEDAI N I  + ++ GI+ F
Sbjct: 1171 TCRIYKLEMTLHVPEHLRTIIEYSSEDWEEILEIVFVRELEDAIQNHILLLSKISGIKNF 1230

Query: 1920 DQLSQSKASKETDE---EVSGMRGEENDDDG---DVSXXXXXXXXXXXXQKRKRQSTDEV 2081
               SQ KAS ETDE   E    R EE+DD+G   D               KRK Q+TDE+
Sbjct: 1231 TPDSQPKASNETDENLPEKRSQREEEDDDNGGADDGEHGEGVEDFGLDAHKRKLQATDEM 1290

Query: 2082 DYDDASEDEPNEGVLSTGFEQEKENGNCLDTEMDGDDVSRNSQDAEMDGDDDASNLPSE- 2258
            DY+D  +DE  E  LS G E E      +D E +  ++ ++ +   +D +D+    P E 
Sbjct: 1291 DYEDGCDDEVREADLSDGDESE------IDEEENEVEIGKDGEIGVIDANDEMPGSPLEE 1344

Query: 2259 -----SQSPXXXXXXXXXXXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXDED 2423
                                        ++ +K+ DR+I V                D +
Sbjct: 1345 AGDLAKPKSKEKKTKSGSQIRKKRKVRAEMVKKETDRAIFV--SAKGFHFEVHFRFADNE 1402

Query: 2424 PHILLQQVALNVAKKVYYQ 2480
            PHILL Q+A   A+KVY Q
Sbjct: 1403 PHILLSQIAQKTAQKVYIQ 1421


>ref|XP_007028855.1| Nuclear RNA polymerase A1 isoform 3 [Theobroma cacao]
            gi|508717460|gb|EOY09357.1| Nuclear RNA polymerase A1
            isoform 3 [Theobroma cacao]
          Length = 1400

 Score =  755 bits (1950), Expect = 0.0
 Identities = 437/852 (51%), Positives = 538/852 (63%), Gaps = 31/852 (3%)
 Frame = +3

Query: 18   SFSCKPGQKVCL-VSEDEMQTLQPAILKPEPLWTGKQVITAVLNHITKGHPPFTVEKEGK 194
            SFS KPGQKV +  SE+ M  + PAILKP+PLWTGKQVI++VL+HIT+G PPFTV K  K
Sbjct: 394  SFSGKPGQKVFVSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSHITRGRPPFTVGKTAK 453

Query: 195  IPREYFGSNTGEDDLSVE---------RKTSXXXXXXXXXXXXXILYVSKNDLVRGVIDK 347
            IPR++F +   ++  S           +K                + + +NDLVRGVIDK
Sbjct: 454  IPRDFFRNRRNKNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEKILIYRNDLVRGVIDK 513

Query: 348  AQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYRDIERKQ 527
            AQF  YGLVHTVQELYG  TAGILLS FSRLFTVFLQMHGFTCGVDDLLI++ +DIERK+
Sbjct: 514  AQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGVDDLLIMEDKDIERKK 573

Query: 528  ELEKCQDFGXXXXXXXXXXXXXRKDIRNVYSKFLGIKYD-EIDPKELPNEIEYGICRYGE 704
            +LE C+                 K +   + +  G+K + E  P EL  EIE  I R GE
Sbjct: 574  QLEDCE-----------------KKVTEAHYELFGVKVNSETAPTELQLEIERTIRRDGE 616

Query: 705  VGTTSLDNEMRKHLS-NASTEVNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVNFQQVSS 881
               T+LD +M   L+ N+S  V  +L  +GL+K   +NC SLMTT+GAKG  VNFQQ+SS
Sbjct: 617  TALTALDRKMISVLNENSSKGVLTELLSEGLVKSMGENCISLMTTSGAKGSKVNFQQISS 676

Query: 882  LLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHCMAGREG 1061
             LGQQ+LEGKRVPRMVSGKTLP F PWDW+ RAGGFISD FL+GL PQEYYFHCMAGREG
Sbjct: 677  FLGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFLSGLRPQEYYFHCMAGREG 736

Query: 1062 LVDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQTSFISK 1241
            LVDTAVKTSRSGYLQRCLIKNLECLK+ YDHTVRDADGSI+QF YGEDG+DVHQTSFI+K
Sbjct: 737  LVDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQFIYGEDGIDVHQTSFIAK 796

Query: 1242 FKALEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVPEKKKH--IDDEDFMK 1415
            F+AL  N  ++ EK    L + +   + LP  L  KA +FI+   +K +H  I  +DF+ 
Sbjct: 797  FEALALNQDMMSEKLCSQLGEPDDSDKILPDGLRSKAEQFIREEIKKYQHQKIKPKDFLN 856

Query: 1416 LMNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMT 1595
            L+  K+ SSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMT
Sbjct: 857  LLKLKFLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMT 916

Query: 1596 ASVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYVGLRHHLYSR-----V 1760
            AS++I+TP+MTCPL K K T E A  LA  +KK+TV DI E++ V +            +
Sbjct: 917  ASIDIRTPVMTCPLHKGK-TKEDALCLANKMKKITVADILESMEVSVAPFAVDNGDICSI 975

Query: 1761 YTLVMNLYRP---ASNSGISLKDYKETLTIQFVRELEDAIHNQINAIKRMHGIQAFDQLS 1931
            Y L M L +P     NS I++KD +  L + F+RELEDAI N +  + ++ GI+ F   S
Sbjct: 976  YKLKMMLGKPDKYFENSDITVKDCEHILKVVFLRELEDAIQNHLVLLSKISGIKKFMPDS 1035

Query: 1932 QSKASKETDEEVSGMRGEE-----NDDDGDVSXXXXXXXXXXXXQKRKRQSTDEVDYDDA 2096
            Q  AS E DE+VS  R  E     +DDD D              QK+K+Q+TDE+DY+D 
Sbjct: 1036 QRNASNEMDEDVSEGRSRETKNDDDDDDDDADDEERAEDLGLDAQKQKQQTTDEMDYEDD 1095

Query: 2097 SEDEPNEGVLSTGFEQE----KENGNCLDTEMDGDDVSRNSQDAEMDGDDDASNLPSESQ 2264
            SE E NEG      E E    ++    +   M G D  ++         ++ SN  S  +
Sbjct: 1096 SEVEQNEGASLAALESEIDMSEDETGTIQINMIGSDNGKDEISQSSPNLENRSNPKSREE 1155

Query: 2265 SPXXXXXXXXXXXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXDEDPHILLQQ 2444
                                 +  RK++DR+I                    +PHILL Q
Sbjct: 1156 K--------TGSEPKRKKMKAKFVRKESDRAI---FNAIRGLCFEVHFKLKNEPHILLAQ 1204

Query: 2445 VALNVAKKVYYQ 2480
            +A   AKKVY Q
Sbjct: 1205 IAEKTAKKVYIQ 1216


>ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
            gi|355509045|gb|AES90187.1| DNA-directed RNA polymerase
            subunit beta [Medicago truncatula]
          Length = 1628

 Score =  751 bits (1940), Expect = 0.0
 Identities = 432/839 (51%), Positives = 536/839 (63%), Gaps = 17/839 (2%)
 Frame = +3

Query: 15   GSFSCKPGQKVCLV-SEDEMQTLQPAILKPEPLWTGKQVITAVLNHITKGHPPFTVEKEG 191
            GSFSCKPGQKV +  SE EM    PAI KPEPLWTGKQVI+A+L +ITKG PPFTVEK  
Sbjct: 650  GSFSCKPGQKVLMSNSESEMFLFPPAIFKPEPLWTGKQVISALLCYITKGRPPFTVEKNA 709

Query: 192  KIPREYFGSNTGEDDLSVERKTSXXXXXXXXXXXXXILYVSKNDLVRGVIDKAQFGSYGL 371
            KIP  +F + TGE    +++ T              ++Y  +NDLVRGV+DKAQFG YG+
Sbjct: 710  KIPSSFFKTQTGE----IKKHTKDTSRKKDELEDKLLIY--RNDLVRGVVDKAQFGDYGM 763

Query: 372  VHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYRDIERKQELEKCQDF 551
            VHTVQE YG  TAGILLSA SRLFT FLQMHGFTCGVDDLLI   +D ER  +LE C++ 
Sbjct: 764  VHTVQEFYGSNTAGILLSALSRLFTNFLQMHGFTCGVDDLLIKVGKDSERLNQLESCEEI 823

Query: 552  GXXXXXXXXXXXXXRKDIRNVYSKFLGIKYDE-IDPKELPNEIEYGICRYGEVGTTSLDN 728
            G               DI  V+ +F+G+   E IDP  +   +E  I   GE   T LD 
Sbjct: 824  G---------------DI--VHREFIGVMESENIDPITMQLNVEKKIRSNGEAAITYLDR 866

Query: 729  EMRKHL-SNASTEVNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVNFQQVSSLLGQQDLE 905
            +M  +L S  S+ V K+L  KG LKP  KN  SLMTT+GAKG MVNFQQ+SS LGQQ+LE
Sbjct: 867  KMISNLNSRTSSGVLKELLSKGSLKPSGKNWISLMTTSGAKGSMVNFQQISSHLGQQELE 926

Query: 906  GKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHCMAGREGLVDTAVKT 1085
            GKRVPRMVSGKTLP F  WD SPRAGGFI D FLT L PQEYYFHCMAGREGLVDTAVKT
Sbjct: 927  GKRVPRMVSGKTLPCFPSWDCSPRAGGFIIDRFLTALRPQEYYFHCMAGREGLVDTAVKT 986

Query: 1086 SRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQTSFISKFKALEENH 1265
            SRSGYLQRCL+KNLE LKVCYDHTVRD+DGSIIQF YGEDGVDVHQTSFI+KF+AL  N 
Sbjct: 987  SRSGYLQRCLMKNLESLKVCYDHTVRDSDGSIIQFHYGEDGVDVHQTSFINKFEALSINK 1046

Query: 1266 QILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVPEKKKH---IDDEDFMKLMNHKYF 1436
            +++       LD+S+ YI  LP  L+ KA  FI+    K+++   + + DF+++M HKY 
Sbjct: 1047 ELIYSNCCRQLDRSSPYINKLPDALKGKAENFIRDFSSKQRNSSSMKEADFLQVMEHKYV 1106

Query: 1437 SSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASVNIKT 1616
            SSLAQPGEPVGVLA+QSVGEP+TQMTLNTFHLAGRGEMNVTLGIPRL EI++ AS NIKT
Sbjct: 1107 SSLAQPGEPVGVLASQSVGEPATQMTLNTFHLAGRGEMNVTLGIPRLHEIVVAASKNIKT 1166

Query: 1617 PIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITEN-----IYVGLRHHLYSRVYTLVMNL 1781
            P MTCPL   KS ++  + LA  +KK+TV DI E+     + V ++      +Y L M L
Sbjct: 1167 PFMTCPLRPNKSMEDAIR-LADKMKKITVADIIESMKVSVVPVAVKEGRICSIYKLTMKL 1225

Query: 1782 YRP---ASNSGISLKDYKETLTIQFVRELEDAIHNQINAIKRMHGIQAFDQLSQSKASKE 1952
            ++P      + ++L+D++ETL + FVRELEDAI N I+ + R+ GI+ F   S S    +
Sbjct: 1226 HKPKHYPKYTDVTLEDWEETLRVGFVRELEDAIENHISLLARISGIKDFQGKSNSSNGLD 1285

Query: 1953 TD---EEVSGMRGEENDDDGDVSXXXXXXXXXXXXQKRKRQSTDEVDYDDASEDEPNEGV 2123
             D   E  S   G+ +DDD +V             QK K+++TDEVDYDD  E+E ++G 
Sbjct: 1286 NDHSNESASNQNGQTDDDD-EVGDTEDAEEDGFDAQKSKQRATDEVDYDDGPEEETHDGE 1344

Query: 2124 LSTGFEQEKENGNCLDTEMDGDDVSRNSQDAEMDGDDDASNLPSESQSPXXXXXXXXXXX 2303
             S   E  ++  +  D + +G +V+ +  D E++  D    L   S+S            
Sbjct: 1345 KSEDVEVSEDGKD--DEDDNGVEVNGDDSDIEVNDSDKNVTLEETSKS------------ 1390

Query: 2304 XXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXDEDPHILLQQVALNVAKKVYYQ 2480
                    + + K  DR + V                  +PHILL Q+A   A+KV  Q
Sbjct: 1391 ---KKRKFEPASKKYDRRVYVKAGGMRFEIHFKFIG---EPHILLAQIAQRTAEKVCIQ 1443


>ref|XP_007028856.1| Nuclear RNA polymerase A1 isoform 4 [Theobroma cacao]
            gi|508717461|gb|EOY09358.1| Nuclear RNA polymerase A1
            isoform 4 [Theobroma cacao]
          Length = 1397

 Score =  751 bits (1939), Expect = 0.0
 Identities = 435/851 (51%), Positives = 536/851 (62%), Gaps = 30/851 (3%)
 Frame = +3

Query: 18   SFSCKPGQKVCL-VSEDEMQTLQPAILKPEPLWTGKQVITAVLNHITKGHPPFTVEKEGK 194
            SFS KPGQKV +  SE+ M  + PAILKP+PLWTGKQVI++VL+HIT+G PPFTV K  K
Sbjct: 394  SFSGKPGQKVFVSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSHITRGRPPFTVGKTAK 453

Query: 195  IPREYFGSNTGEDDLSVE---------RKTSXXXXXXXXXXXXXILYVSKNDLVRGVIDK 347
            IPR++F +   ++  S           +K                + + +NDLVRGVIDK
Sbjct: 454  IPRDFFRNRRNKNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEKILIYRNDLVRGVIDK 513

Query: 348  AQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYRDIERKQ 527
            AQF  YGLVHTVQELYG  TAGILLS FSRLFTVFLQMHGFTCGVDDLLI++ +DIERK+
Sbjct: 514  AQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGVDDLLIMEDKDIERKK 573

Query: 528  ELEKCQDFGXXXXXXXXXXXXXRKDIRNVYSKFLGIKYDEIDPKELPNEIEYGICRYGEV 707
            +LE C+                 K +   + +  G+K +     EL  EIE  I R GE 
Sbjct: 574  QLEDCE-----------------KKVTEAHYELFGVKVNS--ETELQLEIERTIRRDGET 614

Query: 708  GTTSLDNEMRKHLS-NASTEVNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVNFQQVSSL 884
              T+LD +M   L+ N+S  V  +L  +GL+K   +NC SLMTT+GAKG  VNFQQ+SS 
Sbjct: 615  ALTALDRKMISVLNENSSKGVLTELLSEGLVKSMGENCISLMTTSGAKGSKVNFQQISSF 674

Query: 885  LGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHCMAGREGL 1064
            LGQQ+LEGKRVPRMVSGKTLP F PWDW+ RAGGFISD FL+GL PQEYYFHCMAGREGL
Sbjct: 675  LGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFLSGLRPQEYYFHCMAGREGL 734

Query: 1065 VDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQTSFISKF 1244
            VDTAVKTSRSGYLQRCLIKNLECLK+ YDHTVRDADGSI+QF YGEDG+DVHQTSFI+KF
Sbjct: 735  VDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQFIYGEDGIDVHQTSFIAKF 794

Query: 1245 KALEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVPEKKKH--IDDEDFMKL 1418
            +AL  N  ++ EK    L + +   + LP  L  KA +FI+   +K +H  I  +DF+ L
Sbjct: 795  EALALNQDMMSEKLCSQLGEPDDSDKILPDGLRSKAEQFIREEIKKYQHQKIKPKDFLNL 854

Query: 1419 MNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA 1598
            +  K+ SSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA
Sbjct: 855  LKLKFLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA 914

Query: 1599 SVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYVGLRHHLYSR-----VY 1763
            S++I+TP+MTCPL K K T E A  LA  +KK+TV DI E++ V +            +Y
Sbjct: 915  SIDIRTPVMTCPLHKGK-TKEDALCLANKMKKITVADILESMEVSVAPFAVDNGDICSIY 973

Query: 1764 TLVMNLYRP---ASNSGISLKDYKETLTIQFVRELEDAIHNQINAIKRMHGIQAFDQLSQ 1934
             L M L +P     NS I++KD +  L + F+RELEDAI N +  + ++ GI+ F   SQ
Sbjct: 974  KLKMMLGKPDKYFENSDITVKDCEHILKVVFLRELEDAIQNHLVLLSKISGIKKFMPDSQ 1033

Query: 1935 SKASKETDEEVSGMRGEE-----NDDDGDVSXXXXXXXXXXXXQKRKRQSTDEVDYDDAS 2099
              AS E DE+VS  R  E     +DDD D              QK+K+Q+TDE+DY+D S
Sbjct: 1034 RNASNEMDEDVSEGRSRETKNDDDDDDDDADDEERAEDLGLDAQKQKQQTTDEMDYEDDS 1093

Query: 2100 EDEPNEGVLSTGFEQE----KENGNCLDTEMDGDDVSRNSQDAEMDGDDDASNLPSESQS 2267
            E E NEG      E E    ++    +   M G D  ++         ++ SN  S  + 
Sbjct: 1094 EVEQNEGASLAALESEIDMSEDETGTIQINMIGSDNGKDEISQSSPNLENRSNPKSREEK 1153

Query: 2268 PXXXXXXXXXXXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXDEDPHILLQQV 2447
                                +  RK++DR+I                    +PHILL Q+
Sbjct: 1154 --------TGSEPKRKKMKAKFVRKESDRAI---FNAIRGLCFEVHFKLKNEPHILLAQI 1202

Query: 2448 ALNVAKKVYYQ 2480
            A   AKKVY Q
Sbjct: 1203 AEKTAKKVYIQ 1213


>ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform 2 [Theobroma cacao]
            gi|508717459|gb|EOY09356.1| Nuclear RNA polymerase A1,
            putative isoform 2 [Theobroma cacao]
          Length = 1689

 Score =  751 bits (1939), Expect = 0.0
 Identities = 435/851 (51%), Positives = 536/851 (62%), Gaps = 30/851 (3%)
 Frame = +3

Query: 18   SFSCKPGQKVCL-VSEDEMQTLQPAILKPEPLWTGKQVITAVLNHITKGHPPFTVEKEGK 194
            SFS KPGQKV +  SE+ M  + PAILKP+PLWTGKQVI++VL+HIT+G PPFTV K  K
Sbjct: 686  SFSGKPGQKVFVSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSHITRGRPPFTVGKTAK 745

Query: 195  IPREYFGSNTGEDDLSVE---------RKTSXXXXXXXXXXXXXILYVSKNDLVRGVIDK 347
            IPR++F +   ++  S           +K                + + +NDLVRGVIDK
Sbjct: 746  IPRDFFRNRRNKNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEKILIYRNDLVRGVIDK 805

Query: 348  AQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYRDIERKQ 527
            AQF  YGLVHTVQELYG  TAGILLS FSRLFTVFLQMHGFTCGVDDLLI++ +DIERK+
Sbjct: 806  AQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGVDDLLIMEDKDIERKK 865

Query: 528  ELEKCQDFGXXXXXXXXXXXXXRKDIRNVYSKFLGIKYDEIDPKELPNEIEYGICRYGEV 707
            +LE C+                 K +   + +  G+K +     EL  EIE  I R GE 
Sbjct: 866  QLEDCE-----------------KKVTEAHYELFGVKVNS--ETELQLEIERTIRRDGET 906

Query: 708  GTTSLDNEMRKHLS-NASTEVNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVNFQQVSSL 884
              T+LD +M   L+ N+S  V  +L  +GL+K   +NC SLMTT+GAKG  VNFQQ+SS 
Sbjct: 907  ALTALDRKMISVLNENSSKGVLTELLSEGLVKSMGENCISLMTTSGAKGSKVNFQQISSF 966

Query: 885  LGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHCMAGREGL 1064
            LGQQ+LEGKRVPRMVSGKTLP F PWDW+ RAGGFISD FL+GL PQEYYFHCMAGREGL
Sbjct: 967  LGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFLSGLRPQEYYFHCMAGREGL 1026

Query: 1065 VDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQTSFISKF 1244
            VDTAVKTSRSGYLQRCLIKNLECLK+ YDHTVRDADGSI+QF YGEDG+DVHQTSFI+KF
Sbjct: 1027 VDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQFIYGEDGIDVHQTSFIAKF 1086

Query: 1245 KALEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVPEKKKH--IDDEDFMKL 1418
            +AL  N  ++ EK    L + +   + LP  L  KA +FI+   +K +H  I  +DF+ L
Sbjct: 1087 EALALNQDMMSEKLCSQLGEPDDSDKILPDGLRSKAEQFIREEIKKYQHQKIKPKDFLNL 1146

Query: 1419 MNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA 1598
            +  K+ SSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA
Sbjct: 1147 LKLKFLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA 1206

Query: 1599 SVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYVGLRHHLYSR-----VY 1763
            S++I+TP+MTCPL K K T E A  LA  +KK+TV DI E++ V +            +Y
Sbjct: 1207 SIDIRTPVMTCPLHKGK-TKEDALCLANKMKKITVADILESMEVSVAPFAVDNGDICSIY 1265

Query: 1764 TLVMNLYRP---ASNSGISLKDYKETLTIQFVRELEDAIHNQINAIKRMHGIQAFDQLSQ 1934
             L M L +P     NS I++KD +  L + F+RELEDAI N +  + ++ GI+ F   SQ
Sbjct: 1266 KLKMMLGKPDKYFENSDITVKDCEHILKVVFLRELEDAIQNHLVLLSKISGIKKFMPDSQ 1325

Query: 1935 SKASKETDEEVSGMRGEE-----NDDDGDVSXXXXXXXXXXXXQKRKRQSTDEVDYDDAS 2099
              AS E DE+VS  R  E     +DDD D              QK+K+Q+TDE+DY+D S
Sbjct: 1326 RNASNEMDEDVSEGRSRETKNDDDDDDDDADDEERAEDLGLDAQKQKQQTTDEMDYEDDS 1385

Query: 2100 EDEPNEGVLSTGFEQE----KENGNCLDTEMDGDDVSRNSQDAEMDGDDDASNLPSESQS 2267
            E E NEG      E E    ++    +   M G D  ++         ++ SN  S  + 
Sbjct: 1386 EVEQNEGASLAALESEIDMSEDETGTIQINMIGSDNGKDEISQSSPNLENRSNPKSREEK 1445

Query: 2268 PXXXXXXXXXXXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXDEDPHILLQQV 2447
                                +  RK++DR+I                    +PHILL Q+
Sbjct: 1446 --------TGSEPKRKKMKAKFVRKESDRAI---FNAIRGLCFEVHFKLKNEPHILLAQI 1494

Query: 2448 ALNVAKKVYYQ 2480
            A   AKKVY Q
Sbjct: 1495 AEKTAKKVYIQ 1505


>ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citrus clementina]
            gi|557523327|gb|ESR34694.1| hypothetical protein
            CICLE_v10004132mg [Citrus clementina]
          Length = 1715

 Score =  747 bits (1928), Expect = 0.0
 Identities = 441/876 (50%), Positives = 544/876 (62%), Gaps = 50/876 (5%)
 Frame = +3

Query: 3    TSSTGSFSCKPGQKVCLV-SEDEMQTLQPAILKPEPLWTGKQVITAVLNHITKGHPPFTV 179
            +S  GSF+ KPGQ+V +  SE E+  L PAI KPEPLWTGKQVITAVLNHIT+G PPF V
Sbjct: 682  SSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFIV 741

Query: 180  EKEGKIPREYFGSNTGEDDLSV--------------------------------ERKTSX 263
            E+ GK+P+++F +    D  S                                 E K + 
Sbjct: 742  ERGGKLPQDFFKTRFNADKQSGRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAE 801

Query: 264  XXXXXXXXXXXXILYVSKNDLVRGVIDKAQFGSYGLVHTVQELYGPKTAGILLSAFSRLF 443
                         L + KNDLVRGVIDKAQF  YGLVHTVQELYG  TAG LLSA SRLF
Sbjct: 802  KNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGTLLSALSRLF 861

Query: 444  TVFLQMHGFTCGVDDLLILKYRDIERKQELEKCQDFGXXXXXXXXXXXXXRKDIRNVYSK 623
            TVFLQMHGFTCGVDDLLILK ++ ERK  L   ++ G                 + V+ +
Sbjct: 862  TVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIG-----------------KRVHLE 904

Query: 624  FLGIKYD-EIDPKELPNEIEYGICRYGEVGTTSLDNEMRKHLS-NASTEVNKDLFVKGLL 797
             L ++   EIDP +L +EIE  +   G+      D +M   L+ + S+ V  DL  +GLL
Sbjct: 905  ALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINDLLSEGLL 964

Query: 798  KPFPKNCFSLMTTTGAKGGMVNFQQVSSLLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPR 977
            KP  KN  SLMTT+GAKG  VNFQQ+SS LGQQ+LEGKRVPRMVSGKTLPSF PWDW+PR
Sbjct: 965  KPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPR 1024

Query: 978  AGGFISDNFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDHT 1157
            AGGFI D FLTGL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLK+ YD++
Sbjct: 1025 AGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYS 1084

Query: 1158 VRDADGSIIQFSYGEDGVDVHQTSFISKFKALEENHQILREKFLHHLDKSNSYIEHLPPK 1337
            VRDADGSI+QF YGEDGVDVHQTSFISKF AL  N +++ +K    LD SN+YI  LP  
Sbjct: 1085 VRDADGSIVQFCYGEDGVDVHQTSFISKFDALAANQEMIYKKCSGQLDASNAYIMELPDA 1144

Query: 1338 LEKKAREFIKGVPEKKKHIDDEDFMKLMNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTL 1517
            L+  A +F          +  +DF+KL+ HK+  SLAQPGEPVG+LAAQSVGEPSTQMTL
Sbjct: 1145 LKDNAEKFADKF--LSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLAAQSVGEPSTQMTL 1202

Query: 1518 NTFHLAGRGEMNVTLGIPRLQEILMTASVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKV 1697
            NTFHLAGRGEMNVTLGIPRLQEIL  AS +IKTP++TCPLL  K+ D+ AK LA  LKK+
Sbjct: 1203 NTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGKTEDD-AKRLADKLKKI 1261

Query: 1698 TVGDITENIYVGLRHHL-----YSRVYTLVMNLYRP---ASNSGISLKDYKETLTIQFVR 1853
            TV DI + I V +R           VY L M LY+P    + + I+L+D++E L + FVR
Sbjct: 1262 TVADIVKKISVKVRAFTSHDGQACTVYVLTMELYKPKNYPTYTDITLEDWEEILEVVFVR 1321

Query: 1854 ELEDAIHNQINAIKRMHGIQAFDQLSQSKASKETDEEVSG----MRGEENDDDGDVSXXX 2021
            ELED I N +  + +++GI+        KAS ETD+E SG     RG+  DDD D +   
Sbjct: 1322 ELEDTIQNHLLLLSKINGIKNVASGLTQKASNETDQEGSGNVSQCRGD--DDDADDADGE 1379

Query: 2022 XXXXXXXXXQKRKRQSTDEVDYDDASEDEPNEGVLSTGFEQEKENGNCLDTEMDGDDVSR 2201
                      K+K+++TDE DY+D SE E N+GV + GF  E +     ++E+D D    
Sbjct: 1380 EAEDLGMDAHKQKQRATDEKDYEDGSEGEMNDGVSAAGFGSEIDQA---ESEIDDDQAET 1436

Query: 2202 NSQDAEMDGD-DDASNLPSESQSP--XXXXXXXXXXXXXXXXXXXQLSRKDADRSIEVXX 2372
              +D     + +++ +  SE+  P                     +L +KD DR+I V  
Sbjct: 1437 EIEDDRATNEIENSQDQASENLKPFTPKSSKKKSKSKTKRKKARAKLVKKDTDRAIYVAA 1496

Query: 2373 XXXXXXXXXXXXXXDEDPHILLQQVALNVAKKVYYQ 2480
                            +P+ILL Q+A +VAKKVY Q
Sbjct: 1497 RGMHFEAHFKFI---NEPNILLAQIARHVAKKVYIQ 1529


>ref|XP_007145632.1| hypothetical protein PHAVU_007G255400g [Phaseolus vulgaris]
            gi|561018822|gb|ESW17626.1| hypothetical protein
            PHAVU_007G255400g [Phaseolus vulgaris]
          Length = 1637

 Score =  745 bits (1923), Expect = 0.0
 Identities = 435/842 (51%), Positives = 539/842 (64%), Gaps = 20/842 (2%)
 Frame = +3

Query: 15   GSFSCKPGQKVCLV-SEDEMQTLQPAILKPEPLWTGKQVITAVLNHITKGHPPFTVEKEG 191
            GSFS K GQKV +  SE EM    PAI KPEPLWTGKQVI+A+L +IT+  PPFTVEK  
Sbjct: 655  GSFSGKHGQKVFMTNSEFEMFLFPPAIWKPEPLWTGKQVISALLYYITRDSPPFTVEKNA 714

Query: 192  KIPREYFGSNTGEDDLSVERKTSXXXXXXXXXXXXXILYVSKNDLVRGVIDKAQFGSYGL 371
            KIP  +F +   +     +R T               L + KNDLVRGV+DKAQFG YG+
Sbjct: 715  KIPSNFFKTQVRDG----KRHTRDKSRNKVEPDDEDKLLIYKNDLVRGVVDKAQFGDYGI 770

Query: 372  VHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYRDIERKQELEKCQDF 551
            +HTVQELYG K AG LLSA SRLFT FLQMHGFTCGVDDL+I + +D+ER  +L  C++ 
Sbjct: 771  IHTVQELYGSKVAGNLLSALSRLFTTFLQMHGFTCGVDDLMITEEKDVERMDQLRSCEEI 830

Query: 552  GXXXXXXXXXXXXXRKDIRNVYSKFLGI-KYDEIDPKELPNEIEYGICRYGEVGTTSLDN 728
            G               DI  V+ +F+G+   D IDP  L   IE  I   GE   T LD 
Sbjct: 831  G---------------DI--VHREFIGVMNSDIIDPITLQLNIEKKIRSNGEAALTYLDR 873

Query: 729  EMRKHL-SNASTEVNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVNFQQVSSLLGQQDLE 905
            +M  +L S  S+ + KDL   G+LKP  KNC SLMTT+GAKG MVNFQQ+SS LGQQ+LE
Sbjct: 874  KMTSNLNSRTSSGILKDLLSDGILKPSGKNCISLMTTSGAKGSMVNFQQISSHLGQQELE 933

Query: 906  GKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHCMAGREGLVDTAVKT 1085
            GKRVPRMVSGKTLP F PWD SPRAGGFI D FLTGLHPQEYYFHCMAGREGLVDTAVKT
Sbjct: 934  GKRVPRMVSGKTLPCFAPWDCSPRAGGFIIDRFLTGLHPQEYYFHCMAGREGLVDTAVKT 993

Query: 1086 SRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQTSFISKFKALEENH 1265
            SRSGYLQRCL+KNLECLKVCYDHTVRDADGSIIQF YGEDGVDVH TSFI+KF+AL  N 
Sbjct: 994  SRSGYLQRCLMKNLECLKVCYDHTVRDADGSIIQFHYGEDGVDVHHTSFINKFEALSTNK 1053

Query: 1266 QILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVPEKKK--HIDDEDFMKLMNHKYFS 1439
            +++       LD+S+ YI  LP  L++KA  F +   +++    +   +F+KLM HKY S
Sbjct: 1054 ELVYGNCCRQLDRSSPYINKLPDALKEKAENFFRDSLKQRNLGSLKRAEFLKLMEHKYVS 1113

Query: 1440 SLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASVNIKTP 1619
             LAQPGE VGVLA+QSVGEP+TQMTLNTFHLAGRGEMNVTLGIPRLQEI+M A+ +IKTP
Sbjct: 1114 CLAQPGESVGVLASQSVGEPATQMTLNTFHLAGRGEMNVTLGIPRLQEIVMAAARDIKTP 1173

Query: 1620 IMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITEN-----IYVGLRHHLYSRVYTLVMNLY 1784
             MTCPL   KS +E A  LA  LKK+TV DI ++     + V +       +Y LVM LY
Sbjct: 1174 FMTCPLRSNKSMEE-AICLADKLKKITVADIIKSMKVSVVPVSVLGGQVCSIYKLVMKLY 1232

Query: 1785 RP---ASNSGISLKDYKETLTIQFVRELEDAIHNQINAIKRMHGIQAF--DQLSQSKASK 1949
            +P      S I+L+D+++TL I FVRELEDAI N +  + ++ GI+ F  D  S S +S+
Sbjct: 1233 KPKQYPKYSDITLEDWEDTLRISFVRELEDAIENHMALLSKISGIKKFKTDPQSHSNSSE 1292

Query: 1950 E-----TDEEVSGMRGEENDDDGDVSXXXXXXXXXXXXQKRKRQSTDEVDYDDASEDEPN 2114
            +     ++ E  G   +++DDD  V             QKRKRQ TDEVDY+D  E+E +
Sbjct: 1293 DAHGNGSESETKGKSNDDDDDDDVVEDTEGYEDLGSDAQKRKRQGTDEVDYEDGPEEETH 1352

Query: 2115 EGVLSTGFEQEKENGNCLDTEMDGDDVSRNSQDAEMDGDDDASNLPSESQSPXXXXXXXX 2294
            +GVLS   E +++N +        D+++ ++ D+E  G D+     SES+S         
Sbjct: 1353 DGVLSEEIENDEDNVD--------DNMTLDASDSE--GLDEL----SESKS------IFE 1392

Query: 2295 XXXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXDEDPHILLQQVALNVAKKVY 2474
                       + + +  DR++ V                  +P ILL ++AL  AKKV 
Sbjct: 1393 KDSLKREKKKSRPTTRKYDRAVFVKAKGMHFQIHFKFTG---EPDILLAEIALRSAKKVC 1449

Query: 2475 YQ 2480
             Q
Sbjct: 1450 IQ 1451


>ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Citrus
            sinensis]
          Length = 1715

 Score =  744 bits (1921), Expect = 0.0
 Identities = 439/876 (50%), Positives = 544/876 (62%), Gaps = 50/876 (5%)
 Frame = +3

Query: 3    TSSTGSFSCKPGQKVCLV-SEDEMQTLQPAILKPEPLWTGKQVITAVLNHITKGHPPFTV 179
            +S  GSF+ KPGQ+V +  SE E+  L PAI KPEPLWTGKQVITAVLNHIT+G PPF V
Sbjct: 682  SSGLGSFTGKPGQRVLISRSEQEVLPLLPAIWKPEPLWTGKQVITAVLNHITRGRPPFVV 741

Query: 180  EKEGKIPREYFGSNTGEDDLSV--------------------------------ERKTSX 263
            E+ GK+P+++F +    D  S                                 E K + 
Sbjct: 742  ERGGKLPQDFFKTRFNADKQSDRKKNDKGKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAE 801

Query: 264  XXXXXXXXXXXXILYVSKNDLVRGVIDKAQFGSYGLVHTVQELYGPKTAGILLSAFSRLF 443
                         L + KNDLVRGVIDKAQF  YGLVHTVQELYG  TAG LLSA SRLF
Sbjct: 802  KNKSKEKELSEEKLLIYKNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGTLLSALSRLF 861

Query: 444  TVFLQMHGFTCGVDDLLILKYRDIERKQELEKCQDFGXXXXXXXXXXXXXRKDIRNVYSK 623
            TVFLQMHGFTCGVDDLLILK ++ ERK  L   ++ G                 + V+ +
Sbjct: 862  TVFLQMHGFTCGVDDLLILKDKERERKNHLHGSEEIG-----------------KRVHLE 904

Query: 624  FLGIKYD-EIDPKELPNEIEYGICRYGEVGTTSLDNEMRKHLS-NASTEVNKDLFVKGLL 797
             L ++   EIDP +L +EIE  +   G+      D +M   L+ + S+ V  +L  +GLL
Sbjct: 905  ALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQLNKHTSSSVINELLSEGLL 964

Query: 798  KPFPKNCFSLMTTTGAKGGMVNFQQVSSLLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPR 977
            KP  KN  SLMTT+GAKG  VNFQQ+SS LGQQ+LEGKRVPRMVSGKTLPSF PWDW+PR
Sbjct: 965  KPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHPWDWAPR 1024

Query: 978  AGGFISDNFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDHT 1157
            AGGFI D FLTGL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLK+ YD++
Sbjct: 1025 AGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDYS 1084

Query: 1158 VRDADGSIIQFSYGEDGVDVHQTSFISKFKALEENHQILREKFLHHLDKSNSYIEHLPPK 1337
            VRDADGSI+QF YGEDGVDVHQTSFISKF AL  N +++ +K    LD SN+YI  LP  
Sbjct: 1085 VRDADGSIVQFCYGEDGVDVHQTSFISKFDALAANQEMIYKKCSGQLDASNAYIMELPDA 1144

Query: 1338 LEKKAREFIKGVPEKKKHIDDEDFMKLMNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTL 1517
            L+  A +F          +  +DF+KL+ HK+  SLAQPGEPVG+LA+QSVGEPSTQMTL
Sbjct: 1145 LKDNAEKFADKF--LSNEMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTL 1202

Query: 1518 NTFHLAGRGEMNVTLGIPRLQEILMTASVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKV 1697
            NTFHLAGRGEMNVTLGIPRLQEIL  AS +IKTP++TCPLL  K+ D+ AK LA  LKK+
Sbjct: 1203 NTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVITCPLLVGKTEDD-AKRLADKLKKI 1261

Query: 1698 TVGDITENIYVGLRHHL-----YSRVYTLVMNLYRP---ASNSGISLKDYKETLTIQFVR 1853
            TV DI + I V +R           VY L M LY+P    + + I+L+D++E L + FVR
Sbjct: 1262 TVADIVKKISVKVRAFTSHDGQACSVYVLTMELYKPKNYPTYTDITLEDWEEILEVVFVR 1321

Query: 1854 ELEDAIHNQINAIKRMHGIQAFDQLSQSKASKETDEEVSG----MRGEENDDDGDVSXXX 2021
            ELED I N +  + +++GI+        KAS ETD++ SG     RG+  DDD D +   
Sbjct: 1322 ELEDTIQNHLLLLSKINGIKNVASGLTQKASNETDQDGSGNVSQCRGD--DDDADDADGE 1379

Query: 2022 XXXXXXXXXQKRKRQSTDEVDYDDASEDEPNEGVLSTGFEQEKENGNCLDTEMDGDDVSR 2201
                      K+K+++TDE DY+D SE+E N+GV + GF  E +     ++E+D D    
Sbjct: 1380 EAEDLGMDAHKQKQRATDEKDYEDGSEEEMNDGVSAAGFGSEIDQA---ESEIDDDQAET 1436

Query: 2202 NSQDAEMDGDDDAS-NLPSESQSP--XXXXXXXXXXXXXXXXXXXQLSRKDADRSIEVXX 2372
              +D     + + S +  SE+  P                     +L +KD DR+I V  
Sbjct: 1437 EIEDDRATNEIETSQDQASENLKPFTPKSSKKKSKSKSKRKKARAKLVKKDTDRAIYVAA 1496

Query: 2373 XXXXXXXXXXXXXXDEDPHILLQQVALNVAKKVYYQ 2480
                            +P+ILL Q+A +VAKKVY Q
Sbjct: 1497 RGMHFEAHFKFI---NEPNILLAQIARHVAKKVYIQ 1529


>ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
            arietinum]
          Length = 1650

 Score =  739 bits (1909), Expect = 0.0
 Identities = 431/841 (51%), Positives = 527/841 (62%), Gaps = 19/841 (2%)
 Frame = +3

Query: 15   GSFSCKPGQKVCLVSED-EMQTLQPAILKPEPLWTGKQVITAVLNHITKGHPPFTVEKEG 191
            G F  KPGQK+ + + D EM    PAI KPEPLWTGKQVI+A+L +ITKG PPFTVEK  
Sbjct: 658  GPFPGKPGQKIFMSNSDSEMFLFPPAIFKPEPLWTGKQVISALLYYITKGSPPFTVEKNA 717

Query: 192  KIPREYFGSNTGEDDLSVERKTSXXXXXXXXXXXXXILYVSKNDLVRGVIDKAQFGSYGL 371
            KIP  +F +   E      +K +              L + +NDLVRGV+DKAQFG YG+
Sbjct: 718  KIPSSFFKTRMREG-----KKRTKDTSIKKDEPDEDKLLIYRNDLVRGVVDKAQFGDYGI 772

Query: 372  VHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYRDIERKQELEKCQDF 551
            VHTVQE YG  TAGILLSA SRLFT FLQMHGFTCGVDDLL+ + +D ER  +LE C++ 
Sbjct: 773  VHTVQEFYGSNTAGILLSALSRLFTNFLQMHGFTCGVDDLLLTEGKDSERTNQLESCEEI 832

Query: 552  GXXXXXXXXXXXXXRKDIRNVYSKFLGI-KYDEIDPKELPNEIEYGICRYGEVGTTSLDN 728
            G               DI  V+ +F+G+ + D IDP  +   +E  I   GE   T LD 
Sbjct: 833  G---------------DI--VHREFIGVMEGDNIDPITMQLNVEKKIRSNGEAAITYLDR 875

Query: 729  EMRKHL-SNASTEVNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVNFQQVSSLLGQQDLE 905
            +M  +L S  ST V K L  +G+LKP  KN  SLMTT+GAKG MVNFQQ+SS LGQQ+LE
Sbjct: 876  KMISNLNSRTSTGVLKVLLSEGILKPSGKNWISLMTTSGAKGSMVNFQQISSHLGQQELE 935

Query: 906  GKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHCMAGREGLVDTAVKT 1085
            GKRVPRMVSGKTLP F  WD SPRAGGFI D FLT L PQEYYFHCMAGREGLVDTAVKT
Sbjct: 936  GKRVPRMVSGKTLPCFTSWDCSPRAGGFIIDRFLTALRPQEYYFHCMAGREGLVDTAVKT 995

Query: 1086 SRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQTSFISKFKALEENH 1265
            SRSGYLQRCL+KNLECLKVCYDHTVRDADGSIIQF YGEDGVDVHQTSFI+KF+AL  N 
Sbjct: 996  SRSGYLQRCLMKNLECLKVCYDHTVRDADGSIIQFHYGEDGVDVHQTSFINKFEALSTNK 1055

Query: 1266 QILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVPEKKKH---IDDEDFMKLMNHKYF 1436
            +++       LDKS+ YI  LP  L+ KA +FI     K+++   +   +F+ LM HKY 
Sbjct: 1056 ELVYSNCCRELDKSSPYINKLPDALKGKAEKFILDSSSKQRNSGSMTHTNFLHLMEHKYV 1115

Query: 1437 SSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASVNIKT 1616
            SSLAQPGEPVGVLA+QSVGEP+TQMTLNTFHLAGRGEMNVTLGIPRLQEIL  AS +IKT
Sbjct: 1116 SSLAQPGEPVGVLASQSVGEPATQMTLNTFHLAGRGEMNVTLGIPRLQEILTAASAHIKT 1175

Query: 1617 PIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYVG-----LRHHLYSRVYTLVMNL 1781
            P MTCPL   KS ++  + LA  +KK+TV DI E++ V      ++      +Y L+M L
Sbjct: 1176 PFMTCPLRPNKSMEDAIR-LADKMKKITVADIIESMKVSVVPVTVQDGRICSIYKLMMKL 1234

Query: 1782 YRP---ASNSGISLKDYKETLTIQFVRELEDAIHNQINAIKRMHGIQAFDQLSQSKASKE 1952
            ++P      + ++LKD++ETL + FVR LEDAI N I  + ++ GI  F   +Q  +S  
Sbjct: 1235 HKPKHYPKYTDVTLKDWEETLRVSFVRGLEDAIENNIALLAKISGITNFKTDAQPNSSNG 1294

Query: 1953 TDEEVS-GMRGEENDDDGDVSXXXXXXXXXXXXQKRKRQSTDEVDYDDASEDEP-NEGVL 2126
             +++ S G   +++DDDGD              QK KRQ  D+VDYDD  E+E   +G L
Sbjct: 1295 AEDDPSNGKTNDDDDDDGDADDTEGAEDLGLDAQKSKRQVVDDVDYDDGPEEETLEDGEL 1354

Query: 2127 S---TGFEQEKENGNCLDTEMDGDDVSRNSQDAEMDGDDDASNLPSESQSPXXXXXXXXX 2297
            S    G E  K+N    D   DGD       D +  GD+D S++                
Sbjct: 1355 SEDLEGVEDAKDNEYVKD---DGD----GKDDEDGKGDEDGSDIEVNENDKKVTLGANYS 1407

Query: 2298 XXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXDEDPHILLQQVALNVAKKVYY 2477
                       +S+K  DR + V                  +PHILL Q+A   A+KV  
Sbjct: 1408 QGPEENSKSQPVSKK-FDRRVYVKFEKRHFEIHFKFTG---EPHILLAQIAQKTAEKVCI 1463

Query: 2478 Q 2480
            Q
Sbjct: 1464 Q 1464


>ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
            RPA1-like [Cucumis sativus]
          Length = 1652

 Score =  739 bits (1908), Expect = 0.0
 Identities = 435/841 (51%), Positives = 537/841 (63%), Gaps = 15/841 (1%)
 Frame = +3

Query: 3    TSSTGSFSCKPGQKVCLVSED-EMQTLQPAILKPEPLWTGKQVITAVLNHITKGHPPFTV 179
            TS   + S KPGQK+  +  D EM  + PA+ KPEPLWTGKQV+TA+L+HIT+G PPF V
Sbjct: 659  TSKACASSEKPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFFV 718

Query: 180  EKEGKIPREYFGSNTGEDDLSVERKTSXXXXXXXXXXXXXILYVSKNDLVRGVIDKAQFG 359
            EK+ KIPR +   + G    S +++ +              L + KN+LVRGVIDKAQFG
Sbjct: 719  EKDVKIPRGFLILDEGN---SKKKEHTKVDKLKAARLDDDSLLIFKNELVRGVIDKAQFG 775

Query: 360  SYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYRDIERKQELEK 539
             YGLVHTVQELYG  TAG+LLS  SRLFTVFLQ HGFTCGVDDLL+++  D ER+++L+ 
Sbjct: 776  DYGLVHTVQELYGSNTAGLLLSVMSRLFTVFLQTHGFTCGVDDLLLIECMDKEREKQLQI 835

Query: 540  CQDFGXXXXXXXXXXXXXRKDIRNVYSKFLGIKYDE-IDPKELPNEIEYGICRYGEVGTT 716
            C+  G                   V+  FL +K  E +DP  L   IE  I   GE   T
Sbjct: 836  CEKIG-----------------EQVHLGFLKVKDGEKLDPMTLQLNIEKTISYNGEAALT 878

Query: 717  SLDNEMRKHLSN--ASTEVNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVNFQQVSSLLG 890
            SLD +M   L+    +++V KDL  +GLLKP  KNC SLMTT+GAKGG  NFQQ+SS LG
Sbjct: 879  SLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLMTTSGAKGGTANFQQISSHLG 938

Query: 891  QQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHCMAGREGLVD 1070
            QQ LEGKRVPRMVSGKTLP F PWDW+ RAGGFI D FLTGL PQEYYFHCMAGREGLVD
Sbjct: 939  QQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAGREGLVD 998

Query: 1071 TAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQTSFISKFKA 1250
            TAVKTSRSGYLQRCLIKNLE LK+CYDHTVRDADGS+IQF YGEDGVDVH+T+FI+KF+A
Sbjct: 999  TAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGSVIQFQYGEDGVDVHKTAFITKFEA 1058

Query: 1251 LEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVPEKKK---HIDDEDFMKLM 1421
            L  N  +L E   H L K N +I  LP  L +K  EFI     K K    +  EDF++L+
Sbjct: 1059 LAANQDMLYENSHHQLGKYNVFINELPSALREKG-EFIYNSLSKDKVPGLVLKEDFIRLL 1117

Query: 1422 NHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAS 1601
             +KY SSLAQPGEPVGVLAAQS+GEPSTQMTLNTFH AGRGEMNVTLGIPRLQEILMTAS
Sbjct: 1118 ENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTAS 1177

Query: 1602 VNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYVGL-----RHHLYSRVYT 1766
             +IKTPIMTCP LKE  + ++AKGLA  LKK+TV DI E++ V +     R      +Y 
Sbjct: 1178 QDIKTPIMTCP-LKEGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQRKREICSIYK 1236

Query: 1767 LVMNLY---RPASNSGISLKDYKETLTIQFVRELEDAIHNQINAIKRMHGIQAFDQLSQS 1937
            L ++ Y     A +  IS +D + TL   F+ ELE  I  ++  + +++GI+ F   SQS
Sbjct: 1237 LRIDFYPLENNAQHGHISPEDLENTLETVFLEELEGLIEREMVLLSKINGIKXFVPDSQS 1296

Query: 1938 KASKETDEEVSGMRGEENDDDGDVSXXXXXXXXXXXXQKRKRQSTDEVDYDDASEDEPNE 2117
            K S E D EVS  R EE DDD + +            +K+K Q+ DE+DY+D SED+ N 
Sbjct: 1297 KGSSEGD-EVSSSRQEEMDDDDEGNDLDVAEDLGSDXEKQKLQANDEMDYEDDSEDDLNA 1355

Query: 2118 GVLSTGFEQEKENGNCLDTEMDGDDVSRNSQDAEMDGDDDASNLPSESQSPXXXXXXXXX 2297
               STGFE E + G+  + E+  +D+    +D+  +   +  ++ S+S S          
Sbjct: 1356 KESSTGFESEVDQGD--EAEITNNDMIEIVKDSASENQPEIVDV-SKSMS----KEKTTE 1408

Query: 2298 XXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXDEDPHILLQQVALNVAKKVYY 2477
                      +L RK+ DRSI V                  +PH LL Q+    A+KV  
Sbjct: 1409 TSKEKKKVKSELVRKETDRSIFV---EAKENHFEVHFKFTNEPHTLLSQIVQRAAQKVSI 1465

Query: 2478 Q 2480
            Q
Sbjct: 1466 Q 1466


>ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Cucumis
            sativus]
          Length = 1650

 Score =  736 bits (1901), Expect = 0.0
 Identities = 429/841 (51%), Positives = 534/841 (63%), Gaps = 15/841 (1%)
 Frame = +3

Query: 3    TSSTGSFSCKPGQKVCLVSED-EMQTLQPAILKPEPLWTGKQVITAVLNHITKGHPPFTV 179
            TS   + S KPGQK+  +  D EM  + PA+ KPEPLWTGKQV+TA+L+HIT+G PPF V
Sbjct: 653  TSKACASSEKPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFFV 712

Query: 180  EKEGKIPREYFGSNTGEDDLSVERKTSXXXXXXXXXXXXXILYVSKNDLVRGVIDKAQFG 359
            EK+ KIPR +F      ++ S +++ +              L + KN+LVRGVIDKAQFG
Sbjct: 713  EKDVKIPRGFFKCRDMGNNSSKKKEHTKVDKLKAARLDDDSLLIFKNELVRGVIDKAQFG 772

Query: 360  SYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYRDIERKQELEK 539
             YGLVHTVQELYG  TAG+LLS  SRLFTVFLQ HGFTCGVDDLL+++  D ER+++L+ 
Sbjct: 773  DYGLVHTVQELYGSNTAGLLLSVMSRLFTVFLQTHGFTCGVDDLLLIECMDKEREKQLQI 832

Query: 540  CQDFGXXXXXXXXXXXXXRKDIRNVYSKFLGIKYDE-IDPKELPNEIEYGICRYGEVGTT 716
            C+  G                   V+  FL +K  E +DP  L   IE  I   GE   T
Sbjct: 833  CEKIG-----------------EQVHLGFLKVKDGEKLDPMTLQLNIEKTISYNGEAALT 875

Query: 717  SLDNEMRKHLSN--ASTEVNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVNFQQVSSLLG 890
            SLD +M   L+    +++V KDL  +GLLKP  KNC SLMTT+GAKGG  NFQQ+SS LG
Sbjct: 876  SLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLMTTSGAKGGTANFQQISSHLG 935

Query: 891  QQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHCMAGREGLVD 1070
            QQ LEGKRVPRMVSGKTLP F PWDW+ RAGGFI D FLTGL PQEYYFHCMAGREGLVD
Sbjct: 936  QQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAGREGLVD 995

Query: 1071 TAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQTSFISKFKA 1250
            TAVKTSRSGYLQRCLIKNLE LK+CYDHTVRDADGS+IQF YGEDGVDVH+T+FI+KF+A
Sbjct: 996  TAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGSVIQFQYGEDGVDVHKTAFITKFEA 1055

Query: 1251 LEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVPEKKK---HIDDEDFMKLM 1421
            L  N  +L E   H L K N +I  LP  L +K  EFI     K K    +  EDF++L+
Sbjct: 1056 LAANQDMLYENSHHQLGKYNVFINELPSALREKG-EFIYNSLSKDKVPGLVLKEDFIRLL 1114

Query: 1422 NHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAS 1601
             +KY SSLAQPGEPVGVLAAQS+GEPSTQMTLNTFH  GRGEMNVTLGI RLQEILMTAS
Sbjct: 1115 ENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHVGRGEMNVTLGILRLQEILMTAS 1174

Query: 1602 VNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYVGL-----RHHLYSRVYT 1766
             +IKTPIMTCP LKE  + ++AKGLA  LKK+TV DI E++ V +     R      +Y 
Sbjct: 1175 QDIKTPIMTCP-LKEGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQRKREICSIYK 1233

Query: 1767 LVMNLY---RPASNSGISLKDYKETLTIQFVRELEDAIHNQINAIKRMHGIQAFDQLSQS 1937
            L ++ Y     A +  IS +D + TL   F+ ELE  I  ++  + +++GI+ F   SQS
Sbjct: 1234 LRIDFYPLENNAQHGHISPEDLENTLETVFLEELEGLIEREMVLLSKINGIKNFVPDSQS 1293

Query: 1938 KASKETDEEVSGMRGEENDDDGDVSXXXXXXXXXXXXQKRKRQSTDEVDYDDASEDEPNE 2117
            K S E DE  S  + E +DDD + +            +K+K Q+ DE+DY+D SED+ N 
Sbjct: 1294 KGSSEGDEVSSSRQKENDDDDDEGNDLDVAEDLGSDMKKQKLQANDEMDYEDDSEDDLNA 1353

Query: 2118 GVLSTGFEQEKENGNCLDTEMDGDDVSRNSQDAEMDGDDDASNLPSESQSPXXXXXXXXX 2297
               STGFE E + G+  + E+  +D+    +D+  +   +  ++ S+S S          
Sbjct: 1354 KESSTGFESEVDQGD--EAEITNNDMIEIVKDSASENQPEIVDV-SKSMS----KEKTTE 1406

Query: 2298 XXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXDEDPHILLQQVALNVAKKVYY 2477
                      +L RK+ DRSI V                  +PH LL Q+    A+KV  
Sbjct: 1407 TSKEKKKVKSELVRKETDRSIFV---EAKENHFEVHFKFTNEPHTLLSQIVQRAAQKVSI 1463

Query: 2478 Q 2480
            Q
Sbjct: 1464 Q 1464


>ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
            arietinum]
          Length = 1660

 Score =  736 bits (1900), Expect = 0.0
 Identities = 426/846 (50%), Positives = 532/846 (62%), Gaps = 21/846 (2%)
 Frame = +3

Query: 15   GSFSCKPGQKVCLVSED-EMQTLQPAILKPEPLWTGKQVITAVLNHITKGHPPFTVEKEG 191
            G F  KPGQK+ + + D EM    PAI KPEPLWTGKQVI+A+L +ITKG PPFTVEK  
Sbjct: 662  GPFPGKPGQKIFMSNSDSEMFLFPPAIFKPEPLWTGKQVISALLYYITKGSPPFTVEKNA 721

Query: 192  KIPREYFGSNTGEDDLSVERKTSXXXXXXXXXXXXXILYVSKNDLVRGVIDKAQFGSYGL 371
            KIP  +F +   E      +K +              L + KNDLVRGV+DKAQFG YG+
Sbjct: 722  KIPSSFFKTRMREG-----KKRTKDTSIKKDEPDEDKLLIYKNDLVRGVVDKAQFGDYGI 776

Query: 372  VHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYRDIERKQELEKCQDF 551
            VHTVQE YG  TAG LLSA SRLFT FLQMHGFTCGVDDLL+ + +D ER  +LE C++ 
Sbjct: 777  VHTVQEFYGSNTAGFLLSALSRLFTNFLQMHGFTCGVDDLLLTEGKDSERTNQLESCEEI 836

Query: 552  GXXXXXXXXXXXXXRKDIRNVYSKFLGI-KYDEIDPKELPNEIEYGICRYGEVGTTSLDN 728
            G               DI  V+ +F+G+ + D IDP  +   +E  I   GE   T LD 
Sbjct: 837  G---------------DI--VHREFIGVMEGDNIDPITMQLNVEKKIRSNGEAAITYLDR 879

Query: 729  EMRKHL-SNASTEVNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVNFQQVSSLLGQQDLE 905
            +M  +L S  S+ V K+L  +G+LKP  KN  SLMTT+GAKG MVNFQQ+SS LGQQ+LE
Sbjct: 880  KMISNLNSRTSSGVLKELLSEGILKPSGKNWISLMTTSGAKGSMVNFQQISSHLGQQELE 939

Query: 906  GKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHCMAGREGLVDTAVKT 1085
            GKRVPRMVSGKTLP F  WD SPRAGGFI D FLT L PQEYYFHCMAGREGLVDTAVKT
Sbjct: 940  GKRVPRMVSGKTLPCFTSWDCSPRAGGFIIDRFLTALRPQEYYFHCMAGREGLVDTAVKT 999

Query: 1086 SRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQTSFISKFKALEENH 1265
            SRSGYLQRCL+KNLECLKVCYDHTVRDADGSIIQF YGEDGVDVHQTSFI+KF+AL  N 
Sbjct: 1000 SRSGYLQRCLMKNLECLKVCYDHTVRDADGSIIQFHYGEDGVDVHQTSFINKFEALSTNK 1059

Query: 1266 QILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVPEKKKH---IDDEDFMKLMNHKYF 1436
            +++       LD+S+ YI  LP  L+ KA +FI+    K+++   +   +F++LM HKY 
Sbjct: 1060 ELVYSNCCRELDESSPYINKLPDALKGKAEKFIRDSSSKQRNSGSMTHTNFLQLMEHKYV 1119

Query: 1437 SSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASVNIKT 1616
            SSLAQPGEPVGVLA+QSVGEP+TQMTLNTFHLAGRGEMNVTLGIPRLQEIL  AS +IKT
Sbjct: 1120 SSLAQPGEPVGVLASQSVGEPATQMTLNTFHLAGRGEMNVTLGIPRLQEILTAASAHIKT 1179

Query: 1617 PIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYVG-----LRHHLYSRVYTLVMNL 1781
            P MTCPL   KS ++  + LA  +KK+TV DI E++ V      ++      +Y L+M L
Sbjct: 1180 PFMTCPLRPNKSMEDAIR-LADKMKKITVADIIESMKVSVVPVTVQDGRICSIYKLMMKL 1238

Query: 1782 YRP---ASNSGISLKDYKETLTIQFVRELEDAIHNQINAIKRMHGIQAFDQLSQSKASKE 1952
            ++P      + ++LKD++ETL + FVR LEDAI N I  + ++ GI  F   +Q  +S  
Sbjct: 1239 HKPKHYPKYTDVTLKDWEETLRVSFVRGLEDAIENNIALLAKISGITNFKTDAQPNSSNG 1298

Query: 1953 TDEEVSGMR---GEENDDDGDVSXXXXXXXXXXXXQKRKRQSTDEVDYDDASEDEP-NEG 2120
             +++ S  +    +++DDDGD              QK KRQ  D+VDYDD  E+E   +G
Sbjct: 1299 AEDDPSNGKTNDDDDDDDDGDADDTEGAEDLGLDAQKSKRQVVDDVDYDDGPEEETLEDG 1358

Query: 2121 VLS---TGFEQEKENGNCLDTEMDGDDVSRNSQDAEMDGDDDASNLPSESQSPXXXXXXX 2291
             LS    G E  K+N +  D   DGD       D +  GD+D S++              
Sbjct: 1359 ELSEDLEGVEDAKDNEHVKD---DGD----GKDDEDGKGDEDGSDIEVNENDKKVTLGVN 1411

Query: 2292 XXXXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXDEDPHILLQQVALNVAKKV 2471
                         +S+K  DR + V                 ++PHILL Q+   +A+K 
Sbjct: 1412 YSQGPEENSKSQPVSKK-FDRRVYV---KFEKRHFEIHFKFTDEPHILLAQLLSTIAQKT 1467

Query: 2472 YYQIQI 2489
              ++ I
Sbjct: 1468 AEKVCI 1473


>ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Glycine
            max]
          Length = 1651

 Score =  733 bits (1892), Expect = 0.0
 Identities = 429/842 (50%), Positives = 522/842 (61%), Gaps = 20/842 (2%)
 Frame = +3

Query: 15   GSFSCKPGQKVCLV-SEDEMQTLQPAILKPEPLWTGKQVITAVLNHITKGHPPFTVEKEG 191
            GSF  K GQKV +  SE EM    PAI KPEPLWTGKQVI+A+L +IT+G PPFT EK  
Sbjct: 667  GSFYGKHGQKVFISNSESEMFLFPPAIWKPEPLWTGKQVISALLYYITRGSPPFTAEKNA 726

Query: 192  KIPREYFGSNTGEDDLSVERKTSXXXXXXXXXXXXXILYVSKNDLVRGVIDKAQFGSYGL 371
            KIP  +F +   +     E  +               L + KNDLVRGV+DKAQFG YG+
Sbjct: 727  KIPSNFFKTQIRKGKRYTEDTSKKKDKPDEDK-----LLIYKNDLVRGVVDKAQFGDYGM 781

Query: 372  VHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYRDIERKQELEKCQDF 551
            +HTVQELYG   AG LLSA SRLFT FLQMHGFTCGVDDL++ + +D+ER  +L+ C+  
Sbjct: 782  IHTVQELYGSNVAGNLLSALSRLFTTFLQMHGFTCGVDDLMLTEGKDVERMNQLKSCEII 841

Query: 552  GXXXXXXXXXXXXXRKDIRNVYSKFLGIKY-DEIDPKELPNEIEYGICRYGEVGTTSLDN 728
            G                  +V+ +F+G+K  D IDP  L   IE  I   GE   T LD 
Sbjct: 842  GD-----------------SVHREFIGVKNSDNIDPVTLQLNIEKKIRSNGEAALT-LDR 883

Query: 729  EMRKHL-SNASTEVNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVNFQQVSSLLGQQDLE 905
            +M  +L S  S+ + K L  +G+LKP  KNC SLMTT+GAKG MVNFQQ+SS LGQQ+LE
Sbjct: 884  KMTSNLNSRTSSGILKKLLSEGILKPSGKNCISLMTTSGAKGSMVNFQQISSHLGQQELE 943

Query: 906  GKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHCMAGREGLVDTAVKT 1085
            GKRVPRMVSGKTLP F PWD SPRAGGFI D FLT LHPQEYYFHCMAGREGLVDTAVKT
Sbjct: 944  GKRVPRMVSGKTLPCFPPWDCSPRAGGFIIDRFLTALHPQEYYFHCMAGREGLVDTAVKT 1003

Query: 1086 SRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQTSFISKFKALEENH 1265
            SRSGYLQRCL+KNLECLKVCYDHTVRDADGSIIQF YGEDGVDVHQTSFI++F AL  N 
Sbjct: 1004 SRSGYLQRCLMKNLECLKVCYDHTVRDADGSIIQFHYGEDGVDVHQTSFITEFGALSTNK 1063

Query: 1266 QILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVPEKKKHIDDEDFMKLMNHKYFSSL 1445
            +++   +   LD+S+ YI  LP  LE KA +F K        ++  DF++LM HKY S L
Sbjct: 1064 ELVFSNYCRQLDRSSPYINKLPEALEGKAEKFSK--QRNLGSMEQADFLRLMEHKYVSCL 1121

Query: 1446 AQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASVNIKTPIM 1625
            AQPGEPVGVLA+QSVGEP+TQMTLNTFHLAGRGEMNVTLGIPRLQEILM A+ +IKTP M
Sbjct: 1122 AQPGEPVGVLASQSVGEPATQMTLNTFHLAGRGEMNVTLGIPRLQEILMAAARDIKTPFM 1181

Query: 1626 TCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYVGL-----RHHLYSRVYTLVMNLYRP 1790
            TCPL  +KS  + A  LA  LKK+TV DI +++ V +            +Y LVM LY+ 
Sbjct: 1182 TCPLRHDKSMKD-AICLADKLKKITVADIIKSMKVSVVPVTVLGGQVCSIYKLVMKLYKS 1240

Query: 1791 ASN---SGISLKDYKETLTIQFVRELEDAIHNQINAIKRMHGIQAFDQLSQSKASKETDE 1961
                  + I+L D++ETL + FVRELEDAI N +  + ++ GI+ F    QS  S  +++
Sbjct: 1241 KQYPEYTDITLDDWEETLRVNFVRELEDAIQNHMTLLSKISGIKKFKTDPQSNYSNSSED 1300

Query: 1962 EVSG-----MRGEENDDD----GDVSXXXXXXXXXXXXQKRKRQSTDEVDYDDASEDEPN 2114
              S       +G+ NDDD    G V             QKRK Q TDEVDY+D  E+E +
Sbjct: 1301 AHSNGSESEKKGQNNDDDDEDGGGVEDTEGYEDLGSDAQKRKLQGTDEVDYEDGPEEETH 1360

Query: 2115 EGVLSTGFEQEKENGNCLDTEMDGDDVSRNSQDAEMDGDDDASNLPSESQSPXXXXXXXX 2294
            +G LS   E ++          DG DV  N     +   +++  L   S+S         
Sbjct: 1361 DGELSEEIEGDE----------DGSDVDANENYNNVTDANNSEGLEKPSKSKTIDEKQNL 1410

Query: 2295 XXXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXDEDPHILLQQVALNVAKKVY 2474
                       + + K  DR+I V                  +PHILL Q+A   AKKV 
Sbjct: 1411 KREKKKS----EPTTKKYDRAIFVEAKGKHFEIHFRFTG---EPHILLTQIAQRTAKKVC 1463

Query: 2475 YQ 2480
             Q
Sbjct: 1464 IQ 1465


>ref|XP_007028853.1| Nuclear RNA polymerase A1, putative isoform 1 [Theobroma cacao]
            gi|508717458|gb|EOY09355.1| Nuclear RNA polymerase A1,
            putative isoform 1 [Theobroma cacao]
          Length = 1665

 Score =  726 bits (1874), Expect = 0.0
 Identities = 425/846 (50%), Positives = 527/846 (62%), Gaps = 25/846 (2%)
 Frame = +3

Query: 18   SFSCKPGQKVCL-VSEDEMQTLQPAILKPEPLWTGKQVITAVLNHITKGHPPFTVEKEGK 194
            SFS KPGQKV +  SE+ M  + PAILKP+PLWTGKQVI++VL+HIT+G PPFTV K  K
Sbjct: 686  SFSGKPGQKVFVSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSHITRGRPPFTVGKTAK 745

Query: 195  IPREYFGSNTGEDDLSVE---------RKTSXXXXXXXXXXXXXILYVSKNDLVRGVIDK 347
            IPR++F +   ++  S           +K                + + +NDLVRGVIDK
Sbjct: 746  IPRDFFRNRRNKNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEKILIYRNDLVRGVIDK 805

Query: 348  AQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYRDIERKQ 527
            AQF  YGLVHTVQELYG  TAGILLS FSRLFTVFLQMHGFTCGVDDLLI++ +DIERK+
Sbjct: 806  AQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGVDDLLIMEDKDIERKK 865

Query: 528  ELEKCQDFGXXXXXXXXXXXXXRKDIRNVYSKFLGIKYD-EIDPKELPNEIEYGICRYGE 704
            +LE C+                 K +   + +  G+K + E  P EL  EIE  I R GE
Sbjct: 866  QLEDCE-----------------KKVTEAHYELFGVKVNSETAPTELQLEIERTIRRDGE 908

Query: 705  VGTTSLDNEMRKHLS-NASTEVNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVNFQQVSS 881
               T+LD +M   L+ N+S  V  +L  +GL+K   +NC SLMTT+GAKG  VNFQQ+SS
Sbjct: 909  TALTALDRKMISVLNENSSKGVLTELLSEGLVKSMGENCISLMTTSGAKGSKVNFQQISS 968

Query: 882  LLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHCMAGREG 1061
             LGQQ+LEGKRVPRMVSGKTLP F PWDW+ RAGGFISD FL+GL PQEYYFHCMAGREG
Sbjct: 969  FLGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFLSGLRPQEYYFHCMAGREG 1028

Query: 1062 LVDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQTSFISK 1241
            LVDTAVKTSRSGYLQRCLIKNLECLK+ YDHTVRDADGSI+QF YGEDG+DVHQTSFI+K
Sbjct: 1029 LVDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQFIYGEDGIDVHQTSFIAK 1088

Query: 1242 FKALEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVPEKKKH--IDDEDFMK 1415
            F+AL  N  ++ EK    L + +   + LP  L  KA +FI+   +K +H  I  +DF+ 
Sbjct: 1089 FEALALNQDMMSEKLCSQLGEPDDSDKILPDGLRSKAEQFIREEIKKYQHQKIKPKDFLN 1148

Query: 1416 LMNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMT 1595
            L+  K+ SSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMT
Sbjct: 1149 LLKLKFLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMT 1208

Query: 1596 ASVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYVGLRHHLYSR-----V 1760
            AS++I+TP+MTCPL K K T E A  LA  +KK+TV DI E++ V +            +
Sbjct: 1209 ASIDIRTPVMTCPLHKGK-TKEDALCLANKMKKITVADILESMEVSVAPFAVDNGDICSI 1267

Query: 1761 YTLVMNLYRP---ASNSGISLKDYKETLTIQFVRELEDAIHNQINAIKRMHGIQAFDQLS 1931
            Y L M L +P     NS I++KD +  L + F+RELEDAI N +  + ++ GI+ F   S
Sbjct: 1268 YKLKMMLGKPDKYFENSDITVKDCEHILKVVFLRELEDAIQNHLVLLSKISGIKKFMPDS 1327

Query: 1932 QSKASKETDEEVSGMRGEE--NDDDGDVSXXXXXXXXXXXXQKRKRQSTDEVDYDDASED 2105
            Q  AS E DE+VS  R  E  NDDD D                      D+ D ++ +ED
Sbjct: 1328 QRNASNEMDEDVSEGRSRETKNDDDDD---------------------DDDADDEERAED 1366

Query: 2106 -EPNEGVLSTGFEQEKENGNCLDTEMDGDDVSRNSQDAEMDGDDDASNLPSESQSPXXXX 2282
               +   L +  +  ++    +   M G D  ++         ++ SN  S  +      
Sbjct: 1367 LGASLAALESEIDMSEDETGTIQINMIGSDNGKDEISQSSPNLENRSNPKSREEK----- 1421

Query: 2283 XXXXXXXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXDEDPHILLQQVALNVA 2462
                           +  RK++DR+I                    +PHILL Q+A   A
Sbjct: 1422 ---TGSEPKRKKMKAKFVRKESDRAI---FNAIRGLCFEVHFKLKNEPHILLAQIAEKTA 1475

Query: 2463 KKVYYQ 2480
            KKVY Q
Sbjct: 1476 KKVYIQ 1481


>ref|XP_004299740.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Fragaria
            vesca subsp. vesca]
          Length = 1673

 Score =  725 bits (1871), Expect = 0.0
 Identities = 427/850 (50%), Positives = 528/850 (62%), Gaps = 31/850 (3%)
 Frame = +3

Query: 18   SFSCKPGQKVCLV-SEDEMQTLQPAILKPEPLWTGKQVITAVLNHITKGHPPFTVEKEGK 194
            +FS KPGQKV +  SED MQ   PAI KP   W GKQ+IT +LN IT G PP T EKE K
Sbjct: 668  TFSGKPGQKVLMSNSEDAMQLPLPAIWKPVRKWPGKQIITTLLNRITSGSPPLTFEKEAK 727

Query: 195  IPREYFGSNTG-EDDLSVE-----------RKTSXXXXXXXXXXXXXILYVSKNDLVRGV 338
            +P  +F   T  E++ S +           ++                L + KN+LVRGV
Sbjct: 728  LPSGFFNCKTPVEEERSAKGHRAKEKQSRIKEAGKDDSREIEEPDESKLLIYKNNLVRGV 787

Query: 339  IDKAQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYRDIE 518
            IDK QFG YGLVH V ELYG + AG LLSAFSRL+TV+LQMHGFTCGVDDLL+L+ +D +
Sbjct: 788  IDKNQFGDYGLVHNVHELYGSEAAGKLLSAFSRLYTVYLQMHGFTCGVDDLLLLQSKDKK 847

Query: 519  RKQELEKCQDFGXXXXXXXXXXXXXRKDIRNVYSKFLGIKYDEIDPKE-LPNEIEYGICR 695
             K++LE C++ G                   V  +F+G++ +E      L ++IE  +  
Sbjct: 848  MKEQLESCEELG-----------------EKVIREFIGVRQNERKGALILQSDIEEFLRN 890

Query: 696  YGEVGTTSLDNEMRKHLSN--ASTEVNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVNFQ 869
             GE  +  LD +M   L+   ++++V K LF KGL KP  KNC  LMT++GAKGG+ N Q
Sbjct: 891  NGESVSEMLDRKMTSELNKKISNSDVFKQLFQKGLSKPSFKNCMYLMTSSGAKGGVANLQ 950

Query: 870  QVSSLLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHCMA 1049
            Q+++ LGQQ+LEGKRVP+MVSGKTLP F PWDWSPRAGGFI D FLTGLHPQEYYFHCMA
Sbjct: 951  QIAAYLGQQELEGKRVPQMVSGKTLPCFPPWDWSPRAGGFIIDRFLTGLHPQEYYFHCMA 1010

Query: 1050 GREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQTS 1229
            GREGLVDTAVKTSRSGYLQRCLIKNLECLKV YD+TVRDADGSIIQF YGEDG+DVH TS
Sbjct: 1011 GREGLVDTAVKTSRSGYLQRCLIKNLECLKVSYDYTVRDADGSIIQFRYGEDGIDVHLTS 1070

Query: 1230 FISKFKALEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVPEKKKHIDDEDF 1409
            FI KF+ L  N ++  ++F   +DK N YI+ LPP L++KA      +  K+K+ +    
Sbjct: 1071 FIQKFEKLANNKEMFDKRFGREIDKFNPYIDELPPALKRKAEMSGPDLSLKEKNAN---- 1126

Query: 1410 MKLMNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEIL 1589
            +KLM HK+ SSLAQPGEPVG+LAAQSVGEPSTQMTLNTFH AGR EMNVTLGIPRLQEIL
Sbjct: 1127 LKLMEHKFLSSLAQPGEPVGILAAQSVGEPSTQMTLNTFHNAGRSEMNVTLGIPRLQEIL 1186

Query: 1590 MTASVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYVGLR-----HHLYS 1754
            MTAS +IKTP+MTCPL   K+ D  AK LA  LK++TV DI E++ V ++      H   
Sbjct: 1187 MTASNDIKTPVMTCPLRMGKAED--AKSLAGRLKRITVADIIESMKVNIKPFTHQDHQTC 1244

Query: 1755 RVYTLVMNLYRPASNSGISLKDYKETLTIQFVRELEDAIHNQINAIKRMHGIQAFDQLSQ 1934
            RVY L M  + P   S  S +D++E L ++FVR LEDAI N +  + ++ GI+     S 
Sbjct: 1245 RVYELEMTFFIPEHLSKFS-EDWEELLKVKFVRALEDAIQNHLVLLSKISGIKDIKADSL 1303

Query: 1935 SKASKETDEE----VSGMRGEENDDDGDVSXXXXXXXXXXXXQKRKRQSTDEVDYDDASE 2102
             KAS ETDE+    +S   GE  DDD                QK+KRQ TDE++YDD  E
Sbjct: 1304 PKASNETDEDISFNISQHEGEGGDDDNVDDSGEGVEDFGLDAQKQKRQGTDEMEYDDDWE 1363

Query: 2103 DEPNEGVLSTGFEQEKENGNCLDTEMDGDDVSRNSQDAEMDGDDDASNLPSESQS----- 2267
            DE NEG  S  FE E +NG  LD E+D D V+         G  DA++   ES S     
Sbjct: 1364 DEFNEGRQSDEFENEIDNGE-LDVEIDKDGVT---------GISDANDKMQESCSTGGIS 1413

Query: 2268 -PXXXXXXXXXXXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXDEDPHILLQQ 2444
             P                   +L RK+ DR+  V                  +PHILL Q
Sbjct: 1414 KPHSKGKKTKSRDKIKKKTSAKLVRKEYDRATFV---SAKGFHFEIHFKFTNEPHILLDQ 1470

Query: 2445 VALNVAKKVY 2474
            +A   A+ VY
Sbjct: 1471 IAQKTARNVY 1480


>ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
            lycopersicum]
          Length = 1677

 Score =  721 bits (1860), Expect = 0.0
 Identities = 422/841 (50%), Positives = 524/841 (62%), Gaps = 30/841 (3%)
 Frame = +3

Query: 42   KVCLVS-EDEMQTLQPAILKPEPLWTGKQVITAVLNHITKGHPPFTVEKEGKIPREYFGS 218
            KV +V  E  +QT+ PA+ KP+PLWTGKQVITA+LNH+T G PP TV+ +GKIP  YF S
Sbjct: 694  KVSIVDFEGVVQTVLPAVWKPKPLWTGKQVITALLNHLTNGCPPCTVKNKGKIPYAYFLS 753

Query: 219  NTGEDDLSVERKTSXXXXXXXXXXXXXILYVSKNDLVRGVIDKAQFGSYGLVHTVQELYG 398
             +   +     +                  + KN+LVRGVIDKAQFG +GLVHT+QELYG
Sbjct: 754  ESRLVEYQSREEQEDRTAENE-------FLIWKNELVRGVIDKAQFGKFGLVHTIQELYG 806

Query: 399  PKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYRDIERKQELEKCQDFGXXXXXXXX 578
               AGILLSA SRLFT+FLQ+HGFTCG+DDL+IL + DI RK+ELE   D G        
Sbjct: 807  SNKAGILLSALSRLFTIFLQLHGFTCGIDDLVILPHYDIRRKEELEG-DDVG-------- 857

Query: 579  XXXXXRKDIRNVYSKFLGIKYDEIDPKELPNEIEYGICRYGEVGTTSLDNEMRKHLSNAS 758
                        +  F+  K  EI P EL  EIE  I    EV T +LD +M+  L+N  
Sbjct: 858  ---------EEAHCDFVKFKRGEIGPLELQLEIEKAISSNKEVATAALDMKMKNKLANKG 908

Query: 759  TEVNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVNFQQVSSLLGQQDLEGKRVPRMVSGK 938
            ++ NK+L +KGLLKPFP+NC +LMT TGAKG  VNFQQ+SS LGQQ+LEGKRVPRMVSGK
Sbjct: 909  SQFNKELLLKGLLKPFPRNCIALMTITGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGK 968

Query: 939  TLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLI 1118
            TLP F  WD + RAGG++SD FL+GL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLI
Sbjct: 969  TLPCFPAWDCASRAGGYVSDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLI 1028

Query: 1119 KNLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQTSFISKFKALEENHQILREKFLHHL 1298
            KNLE LKVCYD+TVRDADGSIIQF YGEDGVDVH+TSF+  FKAL+ N + + +K L H 
Sbjct: 1029 KNLESLKVCYDYTVRDADGSIIQFYYGEDGVDVHRTSFLKNFKALKNNQETICQK-LRHG 1087

Query: 1299 DKSNSYIEHLPPKLEKKAREFIK----------GVPEKKKHI------DDEDFMKLMNHK 1430
             K NSYIE LP  L +K + F +          G+  KK+ +      ++ DF++L+  K
Sbjct: 1088 CKLNSYIEKLPDGLGEKVKHFWESKTKKLEKKLGMLVKKEEMVKQLKEEEADFLELVGQK 1147

Query: 1431 YFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASVNI 1610
            YFSSLA  GEPVGVLA QSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAS  I
Sbjct: 1148 YFSSLADSGEPVGVLAGQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASEAI 1207

Query: 1611 KTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYV-----GLRHHLYSRVYTLVM 1775
            KTPIMTCP L  KS ++ A+ L   +KK+TV D+ E++ V      + +H  S++Y L +
Sbjct: 1208 KTPIMTCPFLGWKSKND-AQSLLAKVKKITVADMIESMEVKLLPLSIYNHQVSQLYKLTV 1266

Query: 1776 NLYRPASNSGISLKDYKETLTIQFVRELEDAIHNQINAIKRMHGIQAFDQLSQSKASKET 1955
             L +   +  +S +D + TL   F+RELEDAI + +  + +++GIQ F   S+S  S ET
Sbjct: 1267 KLKK---HDFVSSEDCEYTLKFVFLRELEDAIESHLALLSKINGIQNFKTSSESVDSDET 1323

Query: 1956 DEEVSGMRGEEND-DDGDVSXXXXXXXXXXXXQKRKRQSTDEVDYDDASEDEPNEGVLST 2132
            +E  S  R EE   DD D              QKRK+Q+TDE+DYDD  ++   E   + 
Sbjct: 1324 EENASSTRREEEMLDDDDDDEDERTEDLSSDAQKRKQQTTDEMDYDDDEDEAEAEAEATA 1383

Query: 2133 GFEQEK-------ENGNCLDTEMDGDDVSRNSQDAEMDGDDDASNLPSESQSPXXXXXXX 2291
              E EK       +NG   D E +GD  +          ++D SN  +            
Sbjct: 1384 EIEDEKSEQTDEIDNG---DEEENGDRGNEEHTSKLQSTEEDISNTKTSKSK-------- 1432

Query: 2292 XXXXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXDEDPHILLQQVALNVAKKV 2471
                        + S+KD+DR + V                  +PHILL QVA   AKKV
Sbjct: 1433 TKTTVKQKKKKERRSKKDSDRCVFVDVEGLHFEVHFRFV---NEPHILLAQVAQKTAKKV 1489

Query: 2472 Y 2474
            Y
Sbjct: 1490 Y 1490


>ref|NP_191325.1| nuclear RNA polymerase A1 [Arabidopsis thaliana]
            gi|4678281|emb|CAB41189.1| DNA-directed RNA polymerase I
            190K chain-like protein [Arabidopsis thaliana]
            gi|332646163|gb|AEE79684.1| nuclear RNA polymerase A1
            [Arabidopsis thaliana]
          Length = 1670

 Score =  719 bits (1855), Expect = 0.0
 Identities = 424/843 (50%), Positives = 535/843 (63%), Gaps = 22/843 (2%)
 Frame = +3

Query: 18   SFSCKPGQKVCLVSED-EMQTLQPAILKPEPLWTGKQVITAVLNHITKGHPPFTVEKEGK 194
            +FS + G+KV + + D E+ T+ PAILKP PLWTGKQVITAVLN ITKGHPPFTVEK  K
Sbjct: 683  TFSGRSGKKVMVSASDAELLTVTPAILKPVPLWTGKQVITAVLNQITKGHPPFTVEKATK 742

Query: 195  IPREYFGSNTGE-----DDLSVERKTSXXXXXXXXXXXXXILYVSKNDLVRGVIDKAQFG 359
            +P ++F   + E      DL+ +++                L++ KN+ V GVIDKAQF 
Sbjct: 743  LPVDFFKCRSREVKPNSGDLTKKKEIDESWKQNLNEDK---LHIRKNEFVCGVIDKAQFA 799

Query: 360  SYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYRDIERKQELEK 539
             YGLVHTV ELYG   AG LLS FSRLFTVFLQ HGFTCGVDDL+ILK  D ER ++L++
Sbjct: 800  DYGLVHTVHELYGSNAAGNLLSVFSRLFTVFLQTHGFTCGVDDLIILKDMDEERTKQLQE 859

Query: 540  CQDFGXXXXXXXXXXXXXRKDIRNVYSKFLGIKYD-EIDPKELPNEIEYGICRYGEVGTT 716
            C++ G                   V  K  GI  D +IDP+++ + IE  +   GE    
Sbjct: 860  CENVG-----------------ERVLRKTFGIDVDVQIDPQDMRSRIERILYEDGESALA 902

Query: 717  SLDNEMRKHLSNASTE-VNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVNFQQVSSLLGQ 893
            SLD  +  +L+  S++ V  DL   GLLK   +NC SLMT +GAKG  VNFQQ+SS LGQ
Sbjct: 903  SLDRSIVNYLNQCSSKGVMNDLLSDGLLKTPGRNCISLMTISGAKGSKVNFQQISSHLGQ 962

Query: 894  QDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHCMAGREGLVDT 1073
            QDLEGKRVPRMVSGKTLP F PWDWSPRAGGFISD FL+GL PQEYYFHCMAGREGLVDT
Sbjct: 963  QDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFISDRFLSGLRPQEYYFHCMAGREGLVDT 1022

Query: 1074 AVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQTSFISKFKAL 1253
            AVKTSRSGYLQRCL+KNLE LKV YD TVRDADGSIIQF YGEDGVDVH++SFI KFK L
Sbjct: 1023 AVKTSRSGYLQRCLMKNLESLKVNYDCTVRDADGSIIQFQYGEDGVDVHRSSFIEKFKEL 1082

Query: 1254 EENHQILREKFLHH-LDKSNSYIEHLPPKLEKKAREFIKGVPEKK----KHIDDEDFMKL 1418
              N  ++ +K     L  ++SYI  LP  L+K A +F++ +P  +    K +  E+ +KL
Sbjct: 1083 TINQDMVLQKCSEDMLSGASSYISDLPISLKKGAEKFVEAMPMNERIASKFVRQEELLKL 1142

Query: 1419 MNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA 1598
            +  K+F+SLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA
Sbjct: 1143 VKSKFFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA 1202

Query: 1599 SVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYVG-LRHHLYSR----VY 1763
            + NIKTPIMTCPLLK K T E A  +   L+K+TV DI +++ +  + + +Y      ++
Sbjct: 1203 AANIKTPIMTCPLLKGK-TKEDANDITDRLRKITVADIIKSMELSVVPYTVYENEVCSIH 1261

Query: 1764 TLVMNLYRP---ASNSGISLKDYKETLTIQFVRELEDAIHNQINAIKRMHGIQAFDQLSQ 1934
             L +NLY+P     ++ I+ +D++ET+   F+R+LEDAI   +  + R+ GI   + ++ 
Sbjct: 1262 KLKINLYKPEHYPKHTDITEEDWEETMRAVFLRKLEDAIETHMKMLHRIRGIH--NDVTG 1319

Query: 1935 SKASKETDEEVSGMRGEENDDDG-DVSXXXXXXXXXXXXQKRKRQSTDEVDYDDASEDEP 2111
              A  ETD + S + G++N+DDG D              QK+K+Q TDE+DY++ SEDE 
Sbjct: 1320 PIAGNETDNDDS-VSGKQNEDDGDDDGEGTEVDDLGSDAQKQKKQETDEMDYEENSEDET 1378

Query: 2112 NEGVLSTGFEQEKENGNCLDTEMDGDDVSRNSQDAEMDGDDDASNLPSESQSPXXXXXXX 2291
            NE    +G E         D EMD +     ++D E+   +D      ES  P       
Sbjct: 1379 NEPSSISGVE---------DPEMDSE-----NEDTEV-SKEDTPEPQEESMEPQKEVKGV 1423

Query: 2292 XXXXXXXXXXXXQLSRKDADRSIEVXXXXXXXXXXXXXXXXDEDPHILLQQVALNVAKKV 2471
                        +  R  +DR I V                 +DPHILL Q+A   A+KV
Sbjct: 1424 KNVKEQSKKKRRKFVRAKSDRHIFV--KGEGEKFEVHFKFATDDPHILLAQIAQQTAQKV 1481

Query: 2472 YYQ 2480
            Y Q
Sbjct: 1482 YIQ 1484


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