BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia25_contig00012889
         (1094 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citr...   240   9e-61
ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V sub...   234   6e-59
ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Popu...   229   2e-57
emb|CBI40152.3| unnamed protein product [Vitis vinifera]              228   4e-57
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...   228   4e-57
ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E sub...   226   2e-56
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub...   225   3e-56
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   222   2e-55
ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prun...   220   9e-55
ref|XP_007010999.1| DNA-directed RNA polymerase E subunit 1, put...   206   1e-50
ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V sub...   206   2e-50
ref|XP_007133762.1| hypothetical protein PHAVU_011G206900g [Phas...   203   1e-49
ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V sub...   201   3e-49
ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase E sub...   198   4e-48
ref|XP_003627850.1| Protein DCL [Medicago truncatula] gi|3555218...   191   4e-46
ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicag...   191   4e-46
gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinac...   184   6e-44
gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus no...   184   7e-44
emb|CAN63470.1| hypothetical protein VITISV_024603 [Vitis vinifera]   180   1e-42
gb|EYU38281.1| hypothetical protein MIMGU_mgv1a000048mg [Mimulus...   174   6e-41

>ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citrus clementina]
            gi|557522591|gb|ESR33958.1| hypothetical protein
            CICLE_v10004129mg [Citrus clementina]
          Length = 1867

 Score =  240 bits (612), Expect = 9e-61
 Identities = 160/393 (40%), Positives = 205/393 (52%), Gaps = 38/393 (9%)
 Frame = +3

Query: 6    WSTQKSEDWSKSIVDSQRAPQKVSNQI-----EFTEPGTSQGWEAPKK----SGGWISNK 158
            W T+ S D S S V  ++      N +     E  + G S  W   K     +  W  N 
Sbjct: 1483 WGTEASWDKS-SEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATASWGRNG 1541

Query: 159  PETSHDWNSP---------KTDELNKSVVQSPKAGGWATP-KTGGWNXXXXXXXXXXXXX 308
             E +  W++          K D++  +V  S    G      T GW              
Sbjct: 1542 SEENSGWDTKASWNTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSANEKSIV 1601

Query: 309  XXXXQKAGGWTENVSTELTQQEPSQGWNTPTTGAKS---SQWS---HQESGTSQPKASQG 470
                 + GGW  NV       + S G    T  AK    S W    H E+ +SQP +S  
Sbjct: 1602 ----HQIGGW--NVPDAKGTDDSSWGKQKLTENAKGTDDSSWGKQKHTENESSQPASSNA 1655

Query: 471  WDSPIDGGGGSESQ---WGPPRGG-FRKNR---RDGGEWKNKNFRPPNSPGTFGD---VP 620
            WD P D  GGSE++   WG  R   F+KNR      GEWK K  RPP SPG   D   V 
Sbjct: 1656 WDLP-DATGGSETEMQVWGQSRKEPFKKNRGWASSSGEWKGKKNRPPRSPGVVNDDSTVN 1714

Query: 621  AFFTATRQRIDMFTSDEQDIIKDVDPIVTPIKRIMR--GYNDGVRLSAEDQAFIVDNVLN 794
            A +T TRQR+DMFTS+EQDI+ DV+PI+  I+RIM   GYNDG RLSA+D++FI DNV N
Sbjct: 1715 AMYTVTRQRLDMFTSEEQDILSDVEPIMRSIRRIMHQSGYNDGDRLSADDKSFIFDNVFN 1774

Query: 795  YHPDKASKSGTGIDYIKVNTHEFHKDSRCLYVVSSDGREEDFSYVKCIKNFVMEKYPELA 974
            YHPDKA K G GID+ KV+ H   +DSRCL+VVS+DG ++DFSY KC+++F+  KYPE  
Sbjct: 1775 YHPDKAMKMGAGIDHFKVDKHGSFQDSRCLFVVSTDGSQQDFSYRKCLESFIRGKYPEFV 1834

Query: 975  ESFSLKYFRKPEQ-RNRERSLSVAPETPRERSV 1070
            + F  KYFR+P    NRE SL   P  P E++V
Sbjct: 1835 DEFIGKYFRRPRSGGNREPSL---PPVPEEKTV 1864


>ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Citrus
            sinensis]
          Length = 1865

 Score =  234 bits (596), Expect = 6e-59
 Identities = 157/393 (39%), Positives = 203/393 (51%), Gaps = 38/393 (9%)
 Frame = +3

Query: 6    WSTQKSEDWSKSIVDSQRAPQKVSNQI-----EFTEPGTSQGWEAPKK----SGGWISNK 158
            W T+ S D S S V  ++      N +     E  + G S  W   K     +  W  N 
Sbjct: 1481 WGTEASWDKS-SEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATASWGRNG 1539

Query: 159  PETSHDWNSP---------KTDELNKSVVQSPKAGGWATP-KTGGWNXXXXXXXXXXXXX 308
             E +  W++          K D++  +V  S    G      T GW              
Sbjct: 1540 SEENSGWDTKASWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSANEKSIV 1599

Query: 309  XXXXQKAGGWTENVSTELTQQEPSQGWNTPTTGAKS---SQWS---HQESGTSQPKASQG 470
                 + GGW  NV       +   G    T  AK    S W    H E+ + QP +S  
Sbjct: 1600 ----HQIGGW--NVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTENESPQPASSNA 1653

Query: 471  WDSPIDGGGGSESQ---WGPPRGG-FRKNR---RDGGEWKNKNFRPPNSPGTFGD---VP 620
            WD P D  GGSE++   WG  R   F+KNR      GEWK K  RPP SPG   D   V 
Sbjct: 1654 WDLP-DATGGSETEMQVWGQSRKEPFKKNRGWASSSGEWKGKKNRPPRSPGVVNDDSTVN 1712

Query: 621  AFFTATRQRIDMFTSDEQDIIKDVDPIVTPIKRIMR--GYNDGVRLSAEDQAFIVDNVLN 794
            A +T TRQR+DMFTS+EQDI+  V+PI+  I+RIM   GYNDG RLSA+D++FI DNV N
Sbjct: 1713 AMYTVTRQRLDMFTSEEQDILSHVEPIMRSIRRIMHQSGYNDGDRLSADDKSFIFDNVFN 1772

Query: 795  YHPDKASKSGTGIDYIKVNTHEFHKDSRCLYVVSSDGREEDFSYVKCIKNFVMEKYPELA 974
            YHPDKA K G GID+ KV+ H   +DSRCL+VVS+DG ++DFSY KC+++F+  KYP+L 
Sbjct: 1773 YHPDKAMKMGAGIDHFKVDKHGSFQDSRCLFVVSTDGSQQDFSYRKCLESFIRGKYPDLV 1832

Query: 975  ESFSLKYFRKPEQ-RNRERSLSVAPETPRERSV 1070
            + F  KYFR+P    NRE SL   P  P E++V
Sbjct: 1833 DEFIGKYFRRPRSGGNREPSL---PPVPEEKTV 1862


>ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Populus trichocarpa]
            gi|550343552|gb|EEE78905.2| hypothetical protein
            POPTR_0003s19630g [Populus trichocarpa]
          Length = 1920

 Score =  229 bits (584), Expect = 2e-57
 Identities = 131/332 (39%), Positives = 182/332 (54%), Gaps = 21/332 (6%)
 Frame = +3

Query: 129  KKSGGW----ISNKPETSHDWNSPKTDELNKSVVQSPKAGG----WATPKTGGWNXXXXX 284
            K+SGGW     SN+ +T+  W  PK+ E ++    S ++G     W  P + G N     
Sbjct: 1595 KESGGWGNKVTSNQADTASGWGKPKSSENSQGWGLSKESGKEVHEWGVPNSAGGNGSETN 1654

Query: 285  XXXXXXXXXXXXQKAGGWTENVSTELTQQEPSQGWNTPTTGAKSSQWSHQESGTSQPKAS 464
                         K  GW    S+   Q+  + GW  P + A S  W    S     KA 
Sbjct: 1655 NNNENQSLVEQG-KESGWDNKASSN--QEGTASGWGKPKSPALSEGWG---SPREPVKAV 1708

Query: 465  QGWDSPIDGGG---GSESQWGPPRGGFRKNRRDG--------GEWKNKNFRPPNSPGTFG 611
             GW  P  GGG   G + QWG     F+K+R +G        G+WKNK  RP + P    
Sbjct: 1709 HGWGVPNSGGGNGSGRDQQWGQQSREFKKDRFEGSRGWGSNNGDWKNKRNRP-SKPHEDL 1767

Query: 612  DVPAFFTATRQRIDMFTSDEQDIIKDVDPIVTPIKRIMR--GYNDGVRLSAEDQAFIVDN 785
            +    FT TRQR+D+FTS EQDI+ D++P++  I+RIM   GYNDG  LSA+DQ++++DN
Sbjct: 1768 NASGIFTTTRQRLDVFTSQEQDILSDIEPLMLSIRRIMHQTGYNDGDPLSADDQSYVLDN 1827

Query: 786  VLNYHPDKASKSGTGIDYIKVNTHEFHKDSRCLYVVSSDGREEDFSYVKCIKNFVMEKYP 965
            V +YHPDKA K G GID++ V+ H   ++SRC Y+VS+DG ++DFSY KC++NF+  KYP
Sbjct: 1828 VFHYHPDKAVKMGAGIDHVTVSRHSNFQESRCFYIVSTDGCKQDFSYRKCLENFIKGKYP 1887

Query: 966  ELAESFSLKYFRKPEQRNRERSLSVAPETPRE 1061
            +LA+ F  KYF +   R R    + APE   E
Sbjct: 1888 DLADEFIAKYFARRGNRQR----TPAPEGTEE 1915


>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score =  228 bits (580), Expect = 4e-57
 Identities = 148/372 (39%), Positives = 190/372 (51%), Gaps = 52/372 (13%)
 Frame = +3

Query: 120  EAPKKSGGWISNKPE-------TSHDWNSPKTDELNKSVVQSPK---------------- 230
            E+P     W +N PE       TS  W+S    +  K  +QSP                 
Sbjct: 1541 ESPVNEHSWDANLPEDPLAQATTSVGWDSSTGKDWTKRKLQSPSEQQRDPAIKSWSSSHN 1600

Query: 231  -----------AGGWATPKTGGWNXXXXXXXXXXXXXXXXXQKAGGWTENVST-ELTQQE 374
                         GW +P   GWN                 ++   W +  S  +  Q E
Sbjct: 1601 VMKEQSNQPASTHGWDSPGAKGWNDV---------------EEQSQWNQRGSAVKNDQSE 1645

Query: 375  PSQGWNTPTTGAKSSQWSHQESGTSQPKASQGWDSPIDGGGG---SESQWGPPRGGFRKN 545
             S GW     G  + Q        +Q  +SQGW SP  G G    ++SQWG P G  +K+
Sbjct: 1646 SSHGW-----GPSNEQ--------NQLPSSQGWGSPNAGAGHESETQSQWGQPSG--KKS 1690

Query: 546  RRDGG--------EWKNKNFRPPNSPGTFGD---VPAFFTATRQRIDMFTSDEQDIIKDV 692
            R +G         EWKNK  RP    G   D       FTATRQR+D+FTS+EQDI+ DV
Sbjct: 1691 RPEGSRGWGSNNTEWKNKKNRPNKPQGPLNDDYSAGGIFTATRQRVDIFTSEEQDILLDV 1750

Query: 693  DPIVTPIKRIMR--GYNDGVRLSAEDQAFIVDNVLNYHPDKASKSGTGIDYIKVNTHEFH 866
            +PI+  I+RIM   GYNDG  LSA+DQ++I+D V N HPDKA K GTGIDY+ V+ H   
Sbjct: 1751 EPIMQSIRRIMHQAGYNDGDPLSADDQSYILDKVFNNHPDKAVKMGTGIDYVMVSRHSSF 1810

Query: 867  KDSRCLYVVSSDGREEDFSYVKCIKNFVMEKYPELAESFSLKYFRKPEQ-RNRERSLSVA 1043
             +SRC YVVS+DG +EDFSY KC++NF+ EKYP+ AE+F  KYFR+P    NRERS+   
Sbjct: 1811 LESRCFYVVSTDGHKEDFSYRKCLENFIKEKYPDNAETFIGKYFRRPRAGGNRERSVIPE 1870

Query: 1044 PETPRERSVGPE 1079
                RE+SV PE
Sbjct: 1871 DGGNREQSVVPE 1882


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score =  228 bits (580), Expect = 4e-57
 Identities = 148/372 (39%), Positives = 190/372 (51%), Gaps = 52/372 (13%)
 Frame = +3

Query: 120  EAPKKSGGWISNKPE-------TSHDWNSPKTDELNKSVVQSPK---------------- 230
            E+P     W +N PE       TS  W+S    +  K  +QSP                 
Sbjct: 1481 ESPVNEHSWDANLPEDPLAQATTSVGWDSSTGKDWTKRKLQSPSEQQRDPAIKSWSSSHN 1540

Query: 231  -----------AGGWATPKTGGWNXXXXXXXXXXXXXXXXXQKAGGWTENVST-ELTQQE 374
                         GW +P   GWN                 ++   W +  S  +  Q E
Sbjct: 1541 VMKEQSNQPASTHGWDSPGAKGWNDV---------------EEQSQWNQRGSAVKNDQSE 1585

Query: 375  PSQGWNTPTTGAKSSQWSHQESGTSQPKASQGWDSPIDGGGG---SESQWGPPRGGFRKN 545
             S GW     G  + Q        +Q  +SQGW SP  G G    ++SQWG P G  +K+
Sbjct: 1586 SSHGW-----GPSNEQ--------NQLPSSQGWGSPNAGAGHESETQSQWGQPSG--KKS 1630

Query: 546  RRDGG--------EWKNKNFRPPNSPGTFGD---VPAFFTATRQRIDMFTSDEQDIIKDV 692
            R +G         EWKNK  RP    G   D       FTATRQR+D+FTS+EQDI+ DV
Sbjct: 1631 RPEGSRGWGSNNTEWKNKKNRPNKPQGPLNDDYSAGGIFTATRQRVDIFTSEEQDILLDV 1690

Query: 693  DPIVTPIKRIMR--GYNDGVRLSAEDQAFIVDNVLNYHPDKASKSGTGIDYIKVNTHEFH 866
            +PI+  I+RIM   GYNDG  LSA+DQ++I+D V N HPDKA K GTGIDY+ V+ H   
Sbjct: 1691 EPIMQSIRRIMHQAGYNDGDPLSADDQSYILDKVFNNHPDKAVKMGTGIDYVMVSRHSSF 1750

Query: 867  KDSRCLYVVSSDGREEDFSYVKCIKNFVMEKYPELAESFSLKYFRKPEQ-RNRERSLSVA 1043
             +SRC YVVS+DG +EDFSY KC++NF+ EKYP+ AE+F  KYFR+P    NRERS+   
Sbjct: 1751 LESRCFYVVSTDGHKEDFSYRKCLENFIKEKYPDNAETFIGKYFRRPRAGGNRERSVIPE 1810

Query: 1044 PETPRERSVGPE 1079
                RE+SV PE
Sbjct: 1811 DGGNREQSVVPE 1822


>ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Fragaria
            vesca subsp. vesca]
          Length = 1991

 Score =  226 bits (575), Expect = 2e-56
 Identities = 145/406 (35%), Positives = 203/406 (50%), Gaps = 47/406 (11%)
 Frame = +3

Query: 6    WSTQKSEDWSKSIVDSQRAPQKVSNQIEFT---------EPGTSQGWEAPKKSGGWISNK 158
            WS +       + V SQ+A +      +F+           G+  G +  +K G     +
Sbjct: 1591 WSGRGGSKVESTDVQSQKAVENPKGWNDFSAGVRKPQTENAGSGWGMKGSEKKGDIELEQ 1650

Query: 159  PE-TSHDWNSPKTDELNKSVVQSPKA-----GGWATPKT-----GGWNXXXXXXXXXXXX 305
             E T H W     D  ++   +  K+     G W  PK+     G W             
Sbjct: 1651 DESTRHSWKQKSADASSQGAWERQKSPDTSKGTWEQPKSAEMSHGAWGQQKSPDVSQGVW 1710

Query: 306  XXXXXQKA---GGWTENVSTELTQ----QEPSQGWNTPTTGAKSS------QWSHQE-SG 443
                       G W +  S E+ Q    Q+ S   +  T G + S       W  Q+ S 
Sbjct: 1711 GLEKPASTNSQGSWGQQKSPEIPQGNWGQQTSPDISQGTWGQQKSPEMSQGSWGQQKPSD 1770

Query: 444  TSQPKASQGWDSPIDGGGGSESQWGPPRGGFRKNRRDGG--------EWKNKNFRPPNSP 599
            TSQP     WDS  +       QWG      ++ R +GG        EWK KN RP  SP
Sbjct: 1771 TSQPATVNQWDSQSEAAVERHQQWGHNGDSNKRKRFEGGRSWGPNAGEWKGKNSRPAKSP 1830

Query: 600  GTFGD---VPAFFTATRQRIDMFTSDEQDIIKDVDPIVTPIKRIMR--GYNDGVRLSAED 764
            G   D   V A +TATRQR+D+FTS+EQD++  ++P +  I+RIM   GYNDG +LSAED
Sbjct: 1831 GMVNDDSSVAAIYTATRQRLDIFTSEEQDVLSHIEPTMLSIRRIMHQSGYNDGDQLSAED 1890

Query: 765  QAFIVDNVLNYHPDKASKSGTGIDYIKVNTHEFHKDSRCLYVVSSDGREEDFSYVKCIKN 944
             +FI+D V N+HP+K +K G+GIDY  V+ H   ++SRCL+V+S+DGR+EDFSY KC++N
Sbjct: 1891 HSFILDKVFNFHPEKEAKMGSGIDYFTVDRHGSFQESRCLFVISTDGRKEDFSYRKCLQN 1950

Query: 945  FVMEKYPELAESFSLKYFRKPEQRNRERSLSVAPETPRERSVGPET 1082
             + EKYPELAE+F+ KYF +P  RN      +  +TP ER+ G ET
Sbjct: 1951 MIKEKYPELAEAFNDKYFSRPRPRN-----PMFGQTPPERT-GNET 1990


>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
            sativus]
          Length = 1959

 Score =  225 bits (573), Expect = 3e-56
 Identities = 144/375 (38%), Positives = 204/375 (54%), Gaps = 17/375 (4%)
 Frame = +3

Query: 6    WSTQKSEDWSK-SIVDSQRAPQKVSNQIEFTEPGTSQGWEA---PKKSG---GWISNKPE 164
            W  QKS D  K S+ +++       +QIE  E G+  G++     +KS    GW S + +
Sbjct: 1608 WGQQKSRDVIKPSLANNESNLSGWGSQIESNE-GSDHGFDQVTNEQKSSDTRGWDSQE-K 1665

Query: 165  TSHDWNSPKTDELNKSV-VQSPKAGGWATPKTGGWNXXXXXXXXXXXXXXXXXQKAGGWT 341
            T   W+  K+ E ++S   Q+   G W  P+                             
Sbjct: 1666 TDKPWDKQKSLEASQSWGSQNDSLGSWGQPQRASEECSRESQ------------------ 1707

Query: 342  ENVSTELTQQEP---SQGWNTPTTGAKSSQW-SHQESGTSQPKASQGWDSPIDGGGGSES 509
            ++ ST+ +Q +P   S GW    +   S  W SH+ES  S+  +S GWD    G  G   
Sbjct: 1708 DDSSTQFSQLKPPETSLGWEQQKSPEVSHGWGSHKES--SEQTSSHGWDKKNQGSKG--- 1762

Query: 510  QWGPPRGGFRKNRRDGGEWKNKNFRPPNSPGTFGD---VPAFFTATRQRIDMFTSDEQDI 680
             WG           + GEWKN+  RPP SPG   D   + A +TA+ QR+DMFTS+EQDI
Sbjct: 1763 -WGG----------NAGEWKNRKNRPPKSPGMSNDDANLRALYTASGQRLDMFTSEEQDI 1811

Query: 681  IKDVDPIVTPIKRIMR--GYNDGVRLSAEDQAFIVDNVLNYHPDKASKSGTGIDYIKVNT 854
            + D++PI+  I+++M   GYNDG  LSAEDQ+F++ +V N+HPDKA+K G GID+  V+ 
Sbjct: 1812 LADIEPIMQSIRKVMHQSGYNDGDPLSAEDQSFVLQSVFNFHPDKAAKMGAGIDHFMVSR 1871

Query: 855  HEFHKDSRCLYVVSSDGREEDFSYVKCIKNFVMEKYPELAESFSLKYFRKPEQRNRERSL 1034
            H   ++SRC YVV++DG +EDFSY KC+ NF+  KYP+LAE F  KYFRKP + NR R  
Sbjct: 1872 HSSFQESRCFYVVTTDGHKEDFSYRKCLDNFIKGKYPDLAEMFVAKYFRKP-RPNRNRDR 1930

Query: 1035 SVAPETPRERSVGPE 1079
            + A E    +S+G E
Sbjct: 1931 NPASEENENKSIGGE 1945


>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
            1-like [Cucumis sativus]
          Length = 2019

 Score =  222 bits (566), Expect = 2e-55
 Identities = 143/375 (38%), Positives = 204/375 (54%), Gaps = 17/375 (4%)
 Frame = +3

Query: 6    WSTQKSEDWSK-SIVDSQRAPQKVSNQIEFTEPGTSQGWEA---PKKSG---GWISNKPE 164
            W  QKS D  K S+ +++       +QIE  E G+  G++     +KS    GW S + +
Sbjct: 1668 WGQQKSRDVIKPSLANNESNLSGWGSQIESNE-GSDHGFDQVTNEQKSSDTRGWDSQE-K 1725

Query: 165  TSHDWNSPKTDELNKSV-VQSPKAGGWATPKTGGWNXXXXXXXXXXXXXXXXXQKAGGWT 341
            T   W+  K+ E ++S   Q+   G W  P+                             
Sbjct: 1726 TDKPWDKQKSLEASQSWGSQNDSLGSWGQPQRASEECSRESQ------------------ 1767

Query: 342  ENVSTELTQQEP---SQGWNTPTTGAKSSQW-SHQESGTSQPKASQGWDSPIDGGGGSES 509
            ++ ST+ +Q +P   S GW    +   S  W S++ES  S+  +S GWD    G  G   
Sbjct: 1768 DDSSTQFSQLKPPETSLGWEQQKSPEVSHGWGSNKES--SEQTSSHGWDKKNQGSKG--- 1822

Query: 510  QWGPPRGGFRKNRRDGGEWKNKNFRPPNSPGTFGD---VPAFFTATRQRIDMFTSDEQDI 680
             WG           + GEWKN+  RPP SPG   D   + A +TA+ QR+DMFTS+EQDI
Sbjct: 1823 -WGG----------NAGEWKNRKNRPPKSPGMSNDDANLRALYTASGQRLDMFTSEEQDI 1871

Query: 681  IKDVDPIVTPIKRIMR--GYNDGVRLSAEDQAFIVDNVLNYHPDKASKSGTGIDYIKVNT 854
            + D++PI+  I+++M   GYNDG  LSAEDQ+F++ +V N+HPDKA+K G GID+  V+ 
Sbjct: 1872 LADIEPIMQSIRKVMHQSGYNDGDPLSAEDQSFVLQSVFNFHPDKAAKMGAGIDHFMVSR 1931

Query: 855  HEFHKDSRCLYVVSSDGREEDFSYVKCIKNFVMEKYPELAESFSLKYFRKPEQRNRERSL 1034
            H   ++SRC YVV++DG +EDFSY KC+ NF+  KYP+LAE F  KYFRKP + NR R  
Sbjct: 1932 HSSFQESRCFYVVTTDGHKEDFSYRKCLDNFIKGKYPDLAEMFVAKYFRKP-RPNRNRDR 1990

Query: 1035 SVAPETPRERSVGPE 1079
            + A E    +S+G E
Sbjct: 1991 NPASEENENKSIGGE 2005


>ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prunus persica]
            gi|462415343|gb|EMJ20080.1| hypothetical protein
            PRUPE_ppa000088mg [Prunus persica]
          Length = 1855

 Score =  220 bits (560), Expect = 9e-55
 Identities = 121/265 (45%), Positives = 161/265 (60%), Gaps = 28/265 (10%)
 Frame = +3

Query: 336  WTENVSTELTQQEPSQGWNTPTTGAKSSQWSHQESGTSQPKASQ------------GWDS 479
            W +N + E T    +  W T T  A  + W  +E+G  +P   Q            GWDS
Sbjct: 1581 WGKNPAKENT----TSTWGTTT--ASENDWCGREAGKVEPVDLQPTKPQDDSASLSGWDS 1634

Query: 480  PIDGGGGSES--QWGPPRGG-FRKNRRDG--------GEWKNKNFRPPNSPGTFGD---V 617
            P   G   E   QWG  RG   +KNR +G        GEWKNKN RPP SPG   D   +
Sbjct: 1635 PTGDGNSGERNHQWGQHRGDQTKKNRFEGARNWVSSPGEWKNKN-RPPKSPGMVNDNSTM 1693

Query: 618  PAFFTATRQRIDMFTSDEQDIIKDVDPIVTPIKRIMR--GYNDGVRLSAEDQAFIVDNVL 791
             A +T TRQR+DMFTS+EQD++ +++P++  ++RIM   GYNDG  LS +DQ+F++DNV 
Sbjct: 1694 GALYTVTRQRLDMFTSEEQDVLSNIEPVMRSLRRIMHQSGYNDGDPLSGDDQSFVLDNVF 1753

Query: 792  NYHPDKASKSGTGIDYIKVNTHEFHKDSRCLYVVSSDGREEDFSYVKCIKNFVMEKYPEL 971
            NYHPDKA+K G GID++ VN H   +DSRC +VVS+DGR EDFSY KC+ N++ EK+P+L
Sbjct: 1754 NYHPDKAAKMGCGIDHLTVNRHGSFQDSRCFFVVSTDGRTEDFSYRKCLDNYIREKFPDL 1813

Query: 972  AESFSLKYFRKPEQRNRERSLSVAP 1046
            AE+F  KYF +   R R  +L   P
Sbjct: 1814 AETFIGKYFSRRGNRERNPTLIQTP 1838


>ref|XP_007010999.1| DNA-directed RNA polymerase E subunit 1, putative isoform 1
            [Theobroma cacao] gi|590569189|ref|XP_007011000.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            1 [Theobroma cacao] gi|508727912|gb|EOY19809.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            1 [Theobroma cacao] gi|508727913|gb|EOY19810.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            1 [Theobroma cacao]
          Length = 1788

 Score =  206 bits (525), Expect = 1e-50
 Identities = 142/367 (38%), Positives = 193/367 (52%), Gaps = 20/367 (5%)
 Frame = +3

Query: 9    STQKSE--DWSKSIVDSQRAPQKVSNQIEFTE-----PGTSQGWEAPKKSGGWISNKPET 167
            +T++SE  DW  S   +Q     V+  +E TE      G S+  +   K  G   N+   
Sbjct: 1428 TTKQSEWGDWGTSKSKTQDVAAAVTGTME-TEWGDWGKGKSKTQDVSPKVDGTCVNEQTK 1486

Query: 168  SHDWNSPKTDELNKSVVQSPKAGGWATPKTGGWNXXXXXXXXXXXXXXXXXQKAGGW-TE 344
              DW   K D  + S+ +       A   T  W                      GW T+
Sbjct: 1487 LSDWGLKKNDTQDVSMEEKTFKSNGADTGTS-WGTMGKESEKPDANDALPWS---GWGTQ 1542

Query: 345  NV--STELTQQEPSQGWNTPTTGAKSSQWSHQESGTSQPKASQGWDSPIDGGGGSES--- 509
            +V  +  L     S GW    +   S  W   +  ++QP +S GWD+P +G G ++S   
Sbjct: 1543 DVIPTKTLDDSSKSSGWEQQKSPECSQGWGSLDE-SNQPASSNGWDTP-NGLGSTQSEKQ 1600

Query: 510  -QWGPPRGGFRKNRRDGGEWKNKNFRPPNSPGTFGD---VPAFFTATRQRIDMFTSDEQD 677
             QWG  RG    +RR   +   KN  P  S     D   + A +TATRQR+DMFTS+EQD
Sbjct: 1601 HQWGQSRG----SRRWASDASKKN-HPVKSARVMNDDSSMAAMYTATRQRLDMFTSEEQD 1655

Query: 678  IIKDVDPIVTPIKRIMR--GYNDGVRLSAEDQAFIVDNVLNYHPDKASKSGTGIDYIKVN 851
            I+ DV+P++  I++IM   GYNDG  LSA DQ+FI++NV  +HPDKA K G G+DY+ V+
Sbjct: 1656 ILSDVEPLMQSIRKIMHQSGYNDGDPLSALDQSFILENVFTHHPDKAIKMGAGVDYVMVS 1715

Query: 852  THEFHKDSRCLYVVSSDGREEDFSYVKCIKNFVMEKYPELAESFSLKYFRKPEQRN-RER 1028
             H    DSRC YVVS+DGR++DFSY KC+ NF+  KYP++A+ F  KYFRKP     RER
Sbjct: 1716 KHSNFPDSRCFYVVSTDGRKQDFSYRKCLDNFIKGKYPDMADVFIAKYFRKPRFGGFRER 1775

Query: 1029 SLSVAPE 1049
              SVAPE
Sbjct: 1776 --SVAPE 1780


>ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
          Length = 2082

 Score =  206 bits (523), Expect = 2e-50
 Identities = 132/378 (34%), Positives = 188/378 (49%), Gaps = 20/378 (5%)
 Frame = +3

Query: 3    DWSTQKSEDWSKSIVDSQRAPQKVSNQIEFTEPGTSQGWEAPKKSGG---WISNKPETSH 173
            D +  KS +WS    +    P   S  ++    G+ +  +  +K      W+ NK ET  
Sbjct: 1745 DLAKSKSSEWSSWGKNKSEIPAGGSENVQNDSWGSGKLEDDTQKENSGSAWVRNKAETID 1804

Query: 174  DWNSPKTDELNKSVVQSPKAGGWATPKTGGWNXXXXXXXXXXXXXXXXXQKAGGWTENVS 353
                                GG   P+   WN                   +G W     
Sbjct: 1805 --------------------GGSEKPQEDAWN-------------------SGNW----- 1820

Query: 354  TELTQQEPSQGWNTPTTGAKSSQWSHQESGTSQPKASQGWDSPIDGGGGSES----QWGP 521
             +   +  +  W  P +    +  SH +S  +Q  +SQGW+S I     SES    QWG 
Sbjct: 1821 -KAESKVGNASWGKPKSSESQAWDSHNQS--NQNSSSQGWESHI-ASANSESEKGFQWGK 1876

Query: 522  P-RGGFRKNRRDG--------GEWKNKNFRPPNSPGTFGDVPAFFTATRQRIDMFTSDEQ 674
              R  F+KNR +G        G+WKN+N RPP +PG             QR+D+++S EQ
Sbjct: 1877 QGRDSFKKNRFEGSQGRGSNAGDWKNRN-RPPRAPG-------------QRLDIYSSGEQ 1922

Query: 675  DIIKDVDPIVTPIKRIMR--GYNDGVRLSAEDQAFIVDNVLNYHPDKASKSGTGIDYIKV 848
            D++KD++PI+  I+RIM+  GYNDG  L+AEDQ F+++NV  +HPDK +K GTGIDY+ V
Sbjct: 1923 DVLKDIEPIMQSIRRIMQQQGYNDGDPLAAEDQLFVLENVFEHHPDKETKMGTGIDYVMV 1982

Query: 849  NTHEFHKDSRCLYVVSSDGREEDFSYVKCIKNFVMEKYPELAESFSLKYFRKPEQRNRER 1028
            N H   ++SRC YVV  DG  +DFSY KC+ N++ +KYP+LAESF  KYFRKP  R  + 
Sbjct: 1983 NKHSSFQESRCFYVVCKDGESKDFSYRKCLANYISKKYPDLAESFLGKYFRKPRARGDQT 2042

Query: 1029 SLSVAPE--TPRERSVGP 1076
            +     E  TP E++  P
Sbjct: 2043 ATPGRDEAATPGEQTATP 2060


>ref|XP_007133762.1| hypothetical protein PHAVU_011G206900g [Phaseolus vulgaris]
            gi|561006762|gb|ESW05756.1| hypothetical protein
            PHAVU_011G206900g [Phaseolus vulgaris]
          Length = 2052

 Score =  203 bits (516), Expect = 1e-49
 Identities = 132/360 (36%), Positives = 180/360 (50%), Gaps = 36/360 (10%)
 Frame = +3

Query: 105  TSQGWEAPKKSGGWISNKPET---------SHDWNSPKTDELNKSVVQSPKAGG--WATP 251
            TS  W       GW  NK E             W S K   L   V Q   +G   W   
Sbjct: 1710 TSNEW------AGWGRNKSEIPAGGCETVQEDSWGSGK---LKDDVTQKDNSGSGAWGAN 1760

Query: 252  KTGGWNXXXXXXXXXXXXXXXXXQKAGGWTENVSTEL-----TQQEPSQG---WNTPTTG 407
            KTG                    + A G +E +  +       + E   G   W  P + 
Sbjct: 1761 KTG------LTKTEVDEWARNKVETADGGSEKLQEDSWNSGNLKSESKVGNASWGKPNSS 1814

Query: 408  AKSSQWSHQESGTSQPKASQGWDSPIDGGGGSES---QWGPP-RGGFRKNRRDG------ 557
               S  SH +S  +Q  +S+GW+S I           QWG   R  F+KNR +G      
Sbjct: 1815 GSQSWDSHNQS--NQNSSSRGWESHIASANSDSEKGFQWGKQGRESFKKNRFEGSQGRGS 1872

Query: 558  --GEWKNKNFRPPNSPGTFGDVPAFFTATRQRIDMFTSDEQDIIKDVDPIVTPIKRIMR- 728
              G+WKN+N RPP +PG             QR+D+++S+EQD++K+++PI+  I+RIM+ 
Sbjct: 1873 NSGDWKNRN-RPPRTPG-------------QRLDLYSSEEQDVLKEIEPIMQSIRRIMQQ 1918

Query: 729  -GYNDGVRLSAEDQAFIVDNVLNYHPDKASKSGTGIDYIKVNTHEFHKDSRCLYVVSSDG 905
             GYNDG  L+A+DQ F+++NV  +HPDK +K G GIDY+ VN H   +DSRC YVV  DG
Sbjct: 1919 QGYNDGDPLAADDQLFVLENVFEHHPDKDTKMGAGIDYVMVNKHSSFQDSRCFYVVLKDG 1978

Query: 906  REEDFSYVKCIKNFVMEKYPELAESFSLKYFRKPEQRNRERSLSVAPET---PRERSVGP 1076
            R EDFSY KC+ N++ +KYPELAESF  KYFRKP  R  + +     +T   PR+ +  P
Sbjct: 1979 RREDFSYRKCLDNWIRKKYPELAESFFGKYFRKPRNRAEQTATPRGDQTAMPPRDEAATP 2038


>ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
          Length = 2020

 Score =  201 bits (512), Expect = 3e-49
 Identities = 121/351 (34%), Positives = 176/351 (50%), Gaps = 13/351 (3%)
 Frame = +3

Query: 3    DWSTQKSEDWSKSIVDSQRAPQKVSNQIEFTEPGTSQGWEAPKKSGGWISNKPETSHDWN 182
            D +  KS +WS    +    P   S  ++    G  +  +  K + G  +    +   W 
Sbjct: 1695 DLAITKSSEWSSWGKNKTEIPAGGSANVQNDSWGLGKLNDTQKDNSGCGAWGENSGSAWV 1754

Query: 183  SPKTDELNKSVVQSPKAGGWATPKTGGWNXXXXXXXXXXXXXXXXXQKAGGWTENVSTEL 362
              K + ++         GG   P+   WN                   +G W        
Sbjct: 1755 RNKAETID---------GGSEKPQEDAWN-------------------SGNWKAESKVGN 1786

Query: 363  TQQEPSQGWNTPTTGAKSSQWSHQESGTSQPKASQGWDSPIDGGGGSES---QWGPPRGG 533
            T       W  P +    +  SH +S  +Q  +SQGW+S I           QWG  R  
Sbjct: 1787 TT------WGKPKSSESHAWDSHNQS--NQNSSSQGWESHIASANSENEKGFQWGKGRDS 1838

Query: 534  FRKNRRDG--------GEWKNKNFRPPNSPGTFGDVPAFFTATRQRIDMFTSDEQDIIKD 689
            F+KNR +G        G+WKN+N RPP +PG             QR+D+++S+EQD++KD
Sbjct: 1839 FKKNRFEGSQGRGSNAGDWKNRN-RPPRAPG-------------QRLDIYSSEEQDVLKD 1884

Query: 690  VDPIVTPIKRIMR--GYNDGVRLSAEDQAFIVDNVLNYHPDKASKSGTGIDYIKVNTHEF 863
            ++PI+  I+RIM+  GY+DG  L+AEDQ F+++NV  +HPDK +K G GIDY+ VN H  
Sbjct: 1885 IEPIMQSIRRIMQQQGYSDGDPLAAEDQLFVLENVFEHHPDKETKMGAGIDYVMVNKHSS 1944

Query: 864  HKDSRCLYVVSSDGREEDFSYVKCIKNFVMEKYPELAESFSLKYFRKPEQR 1016
             ++SRC YVV  DG+ +DFSY KC+ N++ +KYP+LAESF  KYFRKP  R
Sbjct: 1945 FQESRCFYVVCKDGQSKDFSYRKCLANYISKKYPDLAESFLGKYFRKPRAR 1995


>ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cicer
            arietinum]
          Length = 2263

 Score =  198 bits (503), Expect = 4e-48
 Identities = 133/412 (32%), Positives = 188/412 (45%), Gaps = 52/412 (12%)
 Frame = +3

Query: 6    WSTQKSEDWSKSIVDSQRAPQKVSNQIEFTEPGTSQGWEAPKKSGGWISNKPETSHDWNS 185
            W    S+ W+  +V  Q    + +N    T  G  + W + K       +K      W S
Sbjct: 1825 WEANPSQKWNADLV--QEDSSRSNNDESKTNSGGWKAWGSSKTEVHEGESKKVQEDSWKS 1882

Query: 186  PKTDELNKSVVQSPKAGGWAT------PKTGGWNXXXXXXXXXXXXXXXXXQKAGGWT-- 341
             K          SPK G W        PK+  W+                 Q+   W+  
Sbjct: 1883 QKWKAGADVTQDSPKMGSWGATKDATKPKSNDWSSWGKKKDEIHDGGSEKIQE-DSWSSG 1941

Query: 342  ----ENVSTELTQQEPSQGWNT-------------PTTGAKSSQWSHQESGTSQP----- 455
                E+ S     QE S   NT                   +S W   +S  +QP     
Sbjct: 1942 KRKAESKSVADVMQEDSSKSNTWEHKSDDVKDSWDAKVPVANSSWGKPKSQENQPWDSKN 2001

Query: 456  -----KASQGWDSPIDGGGGSES---QWGPP-RGGFRKNRRDG-----------GEWKNK 575
                  +S+GWDS +           QWG P R  F+KNR +G           G+WKNK
Sbjct: 2002 ESNPTASSRGWDSQVASANSDSDKNFQWGKPGRESFKKNRFEGSQGSQGWGSNAGDWKNK 2061

Query: 576  NFRPPNSPGTFGDVPAFFTATRQRIDMFTSDEQDIIKDVDPIVTPIKRIM--RGYNDGVR 749
            N RP   PG              R+D+++S+EQDI+KD++PIV  I+RIM  +GYNDG  
Sbjct: 2062 N-RPARPPG-------------PRLDLYSSEEQDILKDIEPIVQSIRRIMQQQGYNDGDP 2107

Query: 750  LSAEDQAFIVDNVLNYHPDKASKSGTGIDYIKVNTHEFHKDSRCLYVVSSDGREEDFSYV 929
            L+AEDQ ++++NV  +HPDK +K G GID++ V+ H   ++SRC YVV  DG++EDFSY 
Sbjct: 2108 LAAEDQQYVLENVFEHHPDKETKMGVGIDHVMVSRHSNFQESRCFYVVLKDGKKEDFSYR 2167

Query: 930  KCIKNFVMEKYPELAESFSLKYFRKPEQRNRERSLSVAPETPRERSVGPETP 1085
            KC+++FV +KY + AESF  KYFRKP  +  + + S   +T         TP
Sbjct: 2168 KCLESFVRKKYADTAESFCGKYFRKPRPKRDQIANSGGEQTANPGGEQTATP 2219


>ref|XP_003627850.1| Protein DCL [Medicago truncatula] gi|355521872|gb|AET02326.1| Protein
            DCL [Medicago truncatula]
          Length = 481

 Score =  191 bits (486), Expect = 4e-46
 Identities = 130/381 (34%), Positives = 189/381 (49%), Gaps = 24/381 (6%)
 Frame = +3

Query: 24   EDWSKSIVDSQRAPQKVSNQIEFTEPGTSQGWEAPK--KSGGWISNKPETSHDWNSPKTD 197
            ED S+S    Q+ P+ V +      P  +  W   K  ++  W S K E ++ +  P + 
Sbjct: 110  EDSSRSNAWEQK-PENVKDSWVAKVPVANSSWGKAKSPENRPWDS-KNEPNNSFGKPNSQ 167

Query: 198  ELNKSVVQSPKAGGWATPKTGGWNXXXXXXXXXXXXXXXXXQKAGGWTENVSTELTQQEP 377
            E      ++     W  PK+                     Q++  W        ++ E 
Sbjct: 168  ENEPWDSKNESDSSWGKPKS---------------------QESQPWD-------SKNES 199

Query: 378  SQGWNTPTTGAKSSQWSHQESGTSQPKASQGWDSPIDGGGGSES----QWGPP-RGGFRK 542
            +  W  P +       S  ES  +Q   S+GWDS +     SES    QWG   R  F+K
Sbjct: 200  NSSWGKPKSQENHPWDSKNES--NQTAGSRGWDSQV-ASANSESDKSFQWGKQGRDSFKK 256

Query: 543  NRRDG--------GEWKNKNFRPPNSPGTFGDVPAFFTATRQRIDMFTSDEQDIIKDVDP 698
            NR +G        G+WKN++ RP   PG             QR +++T +EQDI+KD++P
Sbjct: 257  NRFEGSQSGGPNAGDWKNRS-RPVRPPG-------------QRFELYTPEEQDIMKDIEP 302

Query: 699  IVTPIKRIMR--GYNDGVRLSAEDQAFIVDNVLNYHPDKASKSGTGIDYIKVNTHEFHKD 872
            IV  I+RIM+  GYNDG  L+ EDQ ++++NV  +HPDK +K G G+D++ V+ H   +D
Sbjct: 303  IVQSIRRIMQLQGYNDGDPLANEDQKYVLENVFEHHPDKETKMGVGVDHVMVSKHSNFQD 362

Query: 873  SRCLYVVSSDGREEDFSYVKCIKNFVMEKYPELAESFSLKYFRKPEQR-------NRERS 1031
            SRCLYVV  DG++EDFSY KC++N V +KYPE AESF  KYFRKP+ R       N    
Sbjct: 363  SRCLYVVLKDGKKEDFSYRKCLENLVRKKYPETAESFCGKYFRKPQPRVKRDQTPNPAGE 422

Query: 1032 LSVAPETPRERSVGPETPRER 1094
             + AP    E++  P    E+
Sbjct: 423  QTAAPNPAGEQTAAPNPAGEQ 443


>ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicago truncatula]
            gi|355521860|gb|AET02314.1| DNA-directed RNA polymerase
            subunit [Medicago truncatula]
          Length = 2032

 Score =  191 bits (486), Expect = 4e-46
 Identities = 130/381 (34%), Positives = 189/381 (49%), Gaps = 24/381 (6%)
 Frame = +3

Query: 24   EDWSKSIVDSQRAPQKVSNQIEFTEPGTSQGWEAPK--KSGGWISNKPETSHDWNSPKTD 197
            ED S+S    Q+ P+ V +      P  +  W   K  ++  W S K E ++ +  P + 
Sbjct: 1661 EDSSRSNAWEQK-PENVKDSWVAKVPVANSSWGKAKSPENRPWDS-KNEPNNSFGKPNSQ 1718

Query: 198  ELNKSVVQSPKAGGWATPKTGGWNXXXXXXXXXXXXXXXXXQKAGGWTENVSTELTQQEP 377
            E      ++     W  PK+                     Q++  W        ++ E 
Sbjct: 1719 ENEPWDSKNESDSSWGKPKS---------------------QESQPWD-------SKNES 1750

Query: 378  SQGWNTPTTGAKSSQWSHQESGTSQPKASQGWDSPIDGGGGSES----QWGPP-RGGFRK 542
            +  W  P +       S  ES  +Q   S+GWDS +     SES    QWG   R  F+K
Sbjct: 1751 NSSWGKPKSQENHPWDSKNES--NQTAGSRGWDSQV-ASANSESDKSFQWGKQGRDSFKK 1807

Query: 543  NRRDG--------GEWKNKNFRPPNSPGTFGDVPAFFTATRQRIDMFTSDEQDIIKDVDP 698
            NR +G        G+WKN++ RP   PG             QR +++T +EQDI+KD++P
Sbjct: 1808 NRFEGSQSGGPNAGDWKNRS-RPVRPPG-------------QRFELYTPEEQDIMKDIEP 1853

Query: 699  IVTPIKRIMR--GYNDGVRLSAEDQAFIVDNVLNYHPDKASKSGTGIDYIKVNTHEFHKD 872
            IV  I+RIM+  GYNDG  L+ EDQ ++++NV  +HPDK +K G G+D++ V+ H   +D
Sbjct: 1854 IVQSIRRIMQLQGYNDGDPLANEDQKYVLENVFEHHPDKETKMGVGVDHVMVSKHSNFQD 1913

Query: 873  SRCLYVVSSDGREEDFSYVKCIKNFVMEKYPELAESFSLKYFRKPEQR-------NRERS 1031
            SRCLYVV  DG++EDFSY KC++N V +KYPE AESF  KYFRKP+ R       N    
Sbjct: 1914 SRCLYVVLKDGKKEDFSYRKCLENLVRKKYPETAESFCGKYFRKPQPRVKRDQTPNPAGE 1973

Query: 1032 LSVAPETPRERSVGPETPRER 1094
             + AP    E++  P    E+
Sbjct: 1974 QTAAPNPAGEQTAAPNPAGEQ 1994


>gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinacia oleracea]
          Length = 1902

 Score =  184 bits (467), Expect = 6e-44
 Identities = 125/422 (29%), Positives = 189/422 (44%), Gaps = 70/422 (16%)
 Frame = +3

Query: 30   WSKSIVDSQRAPQKVSNQIEFTEPGTSQGWEAPKKSGGWISNKPETSHD-WNSPKTDELN 206
            W +    SQ+   +      F   G  + W++ KK     S+  +     W   K    +
Sbjct: 1477 WGQPRDSSQKNNNENGVSSNFNRQGAGKSWDSKKKESNVQSSWAQQGDSTWKDSKEARSS 1536

Query: 207  KSVVQSPKAGGWATPK------TGGWNXXXXXXXXXXXXXXXXXQKAGGWTENVSTE--- 359
                 S  +GGW+T K      +  W                     G + ++   E   
Sbjct: 1537 VKANNSTNSGGWSTGKALVDGVSSSWGSQKEDRPQPKSNDRSVGD--GNFDKDAKEEGLS 1594

Query: 360  -----LTQQEPSQGWNTPTTGAKSSQWSHQESGT---SQPKASQGWDSP----------- 482
                   +++    W  P+    S+Q S    G+   +QP  S GW S            
Sbjct: 1595 SWDAKKVERKTQSSWGQPSESKNSAQSSADHWGSDKSNQPGKSSGWGSEDTNAGKDSEKQ 1654

Query: 483  ------------------IDGGGGSESQWGPPRG-GFRKNRRDGG---------EWKNKN 578
                              + G   S+S WG P G G+ K + +GG         EWK++ 
Sbjct: 1655 DSWGKSNVSTWKKESGEKLHGSDDSQSPWGQPGGSGWNKKQPEGGRGWGSSNTGEWKSRK 1714

Query: 579  F----------RPPNSPGTFGDVPAF-FTATRQRIDMFTSDEQDIIKDVDPIVTPIKRIM 725
                       RPP  P    D P    TATR+R+D F ++E+D++ +V+ ++  I+RIM
Sbjct: 1715 NQNQNQNQNQNRPPRGPND--DSPRVALTATRKRMDEFPTEEKDVLSEVESLMQSIRRIM 1772

Query: 726  R--GYNDGVRLSAEDQAFIVDNVLNYHPDKASKSGTGIDYIKVNTHEFHKDSRCLYVVSS 899
               G  DG  L  +DQ +++DN+LNYHPDKA+K G G+D+I V  H   ++SRC YVVS+
Sbjct: 1773 HQSGCVDGEPLLPDDQTYLIDNILNYHPDKAAKIGAGVDFITVKKHSNFQESRCFYVVST 1832

Query: 900  DGREEDFSYVKCIKNFVMEKYPELAESFSLKYFRKPEQRNRERSLSVAPETPRERSVGPE 1079
            DG++ DFSY+KCI+ FV  KYP +AESF+ KYFR+ +   R +  S +P +P   S  P 
Sbjct: 1833 DGKDTDFSYIKCIETFVKGKYPSVAESFTSKYFRRSQ---RPQPASPSPASPSPTSPSPA 1889

Query: 1080 TP 1085
            +P
Sbjct: 1890 SP 1891


>gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus notabilis]
          Length = 2054

 Score =  184 bits (466), Expect = 7e-44
 Identities = 103/268 (38%), Positives = 151/268 (56%), Gaps = 19/268 (7%)
 Frame = +3

Query: 333  GWTENVSTELTQQEPSQG------WNTPTTGAKSSQWSHQESGTSQPKASQGWDSPIDGG 494
            GWT++ ++   ++EP+        W   T+   S         +  P+A  G      G 
Sbjct: 1776 GWTKDANSS-ERKEPTDSPVVYNSWEKRTSSEISQNVESASFNSWLPRAGDG------GE 1828

Query: 495  GGSESQWGPPRGGFRKNR--------RDGGEWKNKNFRPPNSPGTFGDVPA--FFTATRQ 644
                ++W    G F+KN          D G+WK K   P   P    D  +   FT TRQ
Sbjct: 1829 VEKPNEWVKKSGSFKKNHGETSGGWGSDSGDWKIKKNHPGKFPRMNNDNTSVRLFTETRQ 1888

Query: 645  RIDMFTSDEQDIIKDVDPIVTPIKRIMR--GYNDGVRLSAEDQAFIVDNVLNYHPDKASK 818
            R+D+FTS+EQD +  ++P +  I+RIM   GYNDG  +  EDQ+FI+DNV NYHPDKA+K
Sbjct: 1889 RLDLFTSEEQDALSLIEPTMKSIRRIMHKSGYNDGDPIRPEDQSFIIDNVFNYHPDKAAK 1948

Query: 819  SGTGIDYIKVNTHEFHKDSRCLYVVSSDGREEDFSYVKCIKNFVMEKYPELAESFSLKYF 998
             G+GID++ ++ H   +DSRCLYVVS+DGR+EDFSY KC+ N +  ++P++A+ F  KYF
Sbjct: 1949 MGSGIDHLMISRHSSFQDSRCLYVVSTDGRKEDFSYRKCLGNLIKSRFPDVADEFLDKYF 2008

Query: 999  RKPEQ-RNRERSLSVAPETPRERSVGPE 1079
            RKP+   N++R  +  P     ++  PE
Sbjct: 2009 RKPKPGGNQDRISTPEPAWNNTQAPTPE 2036


>emb|CAN63470.1| hypothetical protein VITISV_024603 [Vitis vinifera]
          Length = 1081

 Score =  180 bits (456), Expect = 1e-42
 Identities = 140/431 (32%), Positives = 184/431 (42%), Gaps = 111/431 (25%)
 Frame = +3

Query: 120  EAPKKSGGWISNKPE-------TSHDWNSPKTDELNKSVVQSPK---------------- 230
            E+P     W +N PE       TS  W+S    +  K  +QSP                 
Sbjct: 673  ESPVNEHSWDANLPEDPLAQATTSVGWDSSTGKDWTKRKLQSPSEQQRDPAIKSWSSSHN 732

Query: 231  -----------AGGWATPKTGGWNXXXXXXXXXXXXXXXXXQKAGGWTENVST-ELTQQE 374
                         GW +P   GWN                 ++   W +  S  +  Q E
Sbjct: 733  VMKEQSNQPASTHGWDSPGAKGWNDV---------------EEQSQWNQRGSAVKNDQSE 777

Query: 375  PSQGWNTPTTGAKSSQWSHQESGTSQPKASQGWDSPIDGGGG---SESQWGPPRGGFRKN 545
             S GW     G  + Q        +Q  +SQGW SP  G G    ++SQWG P G  +K+
Sbjct: 778  SSHGW-----GPSNEQ--------NQLPSSQGWGSPNAGAGHESETQSQWGQPSG--KKS 822

Query: 546  RRDGG--------EWKNKNFRPPNSPGTFGD---VPAFFTATRQRIDMFTSDEQDIIKDV 692
            R +G         EWKNK  RP    G   D       FTATRQR+D+FTS+EQDI+ DV
Sbjct: 823  RPEGSRGWGSNNTEWKNKKNRPNKPQGPLNDDYSAGGIFTATRQRVDIFTSEEQDILLDV 882

Query: 693  DPIVTPIKRIMR--GY--------------------------------------NDGVRL 752
            +PI+  I+RIM   GY                                      +  V L
Sbjct: 883  EPIMQSIRRIMHQAGYLSMNLYANIFIVVAGMVKIEYLVYGQGVPTLGDTKHWHSGAVSL 942

Query: 753  SAEDQAFIVDNVLNY---------------------HPDKASKSGTGIDYIKVNTHEFHK 869
               ++ + +D  + Y                     HPDKA K GTGIDY+ V+ H    
Sbjct: 943  PHSERTYKIDIGVQYNDGDPLSADDQSYILDKVFNNHPDKAVKMGTGIDYVMVSRHSSFL 1002

Query: 870  DSRCLYVVSSDGREEDFSYVKCIKNFVMEKYPELAESFSLKYFRKPEQ-RNRERSLSVAP 1046
            +SRC YVVS+DG +EDFSY KC++NF+ EKYP+ AE+F  KYFR+P    NRERS+    
Sbjct: 1003 ESRCFYVVSTDGHKEDFSYRKCLENFIKEKYPDNAETFIGKYFRRPRAGGNRERSVIPED 1062

Query: 1047 ETPRERSVGPE 1079
               RE+SV PE
Sbjct: 1063 GGNREQSVVPE 1073


>gb|EYU38281.1| hypothetical protein MIMGU_mgv1a000048mg [Mimulus guttatus]
          Length = 2113

 Score =  174 bits (441), Expect = 6e-41
 Identities = 117/369 (31%), Positives = 171/369 (46%), Gaps = 39/369 (10%)
 Frame = +3

Query: 27   DWSKSIVDSQ----RAPQKVSNQIEFTEPGTSQGWEAPK--KSGGWISNKPETSHDWNSP 188
            DW+K    S     +A Q  +      +   ++   +PK  + G W S +      W   
Sbjct: 1673 DWAKKDEQSTWGNVKASQIQNKSTWGRDAAPTENVSSPKSQEDGLWSSAQKGEQSTWGHV 1732

Query: 189  KTDEL-NKSVVQSPKAGGWATPKTGGWNXXXXXXXXXXXXXXXXXQKAGGWTENVSTELT 365
            KT +  NKS      A     P                       +    W   V+ E  
Sbjct: 1733 KTSQTQNKSTWGGDTAPIENVPSPKSQEDGLWSSASAAQKEQDGSKDNNPWQTKVA-EQA 1791

Query: 366  QQEPSQGWNTPTTGAK-------------SSQWSHQESGTSQPKASQGW-DSPIDGGGGS 503
              EP   W + +   K              S WS  +   +    SQGW  S +D    +
Sbjct: 1792 NSEPLSTWGSSSDWVKPDSQTPTGDNTKNESPWSSSQKLLNDSTDSQGWGSSKVDTANDN 1851

Query: 504  ESQ--------------WGPPRGGFRKNRRDGGEWKNKNFRPPNSPGTFGD--VPAFFTA 635
            + Q              WG   G  R+  +  G   +++++   S G   D   P  FTA
Sbjct: 1852 DEQPQWGRGRGRGRGRGWGRGVGRGREGSQGRGPTNDRDWKNKRSGGPVDDPNAPGIFTA 1911

Query: 636  TRQRIDMFTSDEQDIIKDVDPIVTPIKRIMR--GYNDGVRLSAEDQAFIVDNVLNYHPDK 809
            +RQR+D FT++EQ+++ + + I+  I+R+M   GYNDG  LSA+DQ +IVDNVLN+HP+K
Sbjct: 1912 SRQRLDSFTAEEQEVLLETETIMKNIRRVMHQTGYNDGDPLSADDQKYIVDNVLNHHPEK 1971

Query: 810  ASKSGTGIDYIKVNTHEFHKDSRCLYVVSSDGREEDFSYVKCIKNFVMEKYPELAESFSL 989
            + K G G+D+I VN H   + SRCLY V+ DG + DFSY KC+ NF+  KYP++AESF  
Sbjct: 1972 SLKIGAGLDHIMVNKHSEFQMSRCLYAVTIDGSKADFSYRKCLDNFIRGKYPDVAESFIA 2031

Query: 990  KYFRKPEQR 1016
            KYF+KP+ R
Sbjct: 2032 KYFKKPQPR 2040