BLASTX nr result
ID: Paeonia25_contig00012759
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Paeonia25_contig00012759
(1118 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ACY01923.1| hypothetical protein [Beta vulgaris] 60 9e-12
emb|CAN69821.1| hypothetical protein VITISV_030674 [Vitis vinifera] 48 5e-11
emb|CAN66208.1| hypothetical protein VITISV_035070 [Vitis vinifera] 48 1e-09
emb|CAN77974.1| hypothetical protein VITISV_006175 [Vitis vinifera] 47 3e-09
emb|CAN79264.1| hypothetical protein VITISV_034881 [Vitis vinifera] 46 4e-09
emb|CAN60947.1| hypothetical protein VITISV_015758 [Vitis vinifera] 44 3e-08
emb|CAN76956.1| hypothetical protein VITISV_022305 [Vitis vinifera] 45 4e-08
emb|CAN68953.1| hypothetical protein VITISV_016199 [Vitis vinifera] 45 4e-08
emb|CAN80162.1| hypothetical protein VITISV_038102 [Vitis vinifera] 44 4e-08
gb|AEL30347.1| copia-like polyprotein [Arachis hypogaea] 50 5e-08
ref|XP_004305666.1| PREDICTED: uncharacterized protein LOC101305... 47 6e-08
emb|CAN60706.1| hypothetical protein VITISV_043852 [Vitis vinifera] 43 1e-07
ref|XP_004295873.1| PREDICTED: uncharacterized protein LOC101296... 43 2e-07
emb|CAE01490.1| P0041A24.2 [Oryza sativa Japonica Group] 46 2e-07
dbj|BAF36296.1| hypothetical protein [Ipomoea trifida] 44 2e-07
gb|AAS79613.1| putative copia-like polyprotein [Ipomoea trifida] 44 2e-07
gb|ABF96803.1| retrotransposon protein, putative, Ty1-copia subc... 44 4e-07
gb|AAU89218.1| integrase core domain containing protein [Oryza s... 44 4e-07
gb|AAK91878.1|AC091665_4 Putative copia-type pol polyprotein [Or... 48 4e-07
gb|AAK84483.1| putative copia-like polyprotein [Solanum lycopers... 43 4e-07
>gb|ACY01923.1| hypothetical protein [Beta vulgaris]
Length = 572
Score = 60.5 bits (145), Expect(2) = 9e-12
Identities = 74/255 (29%), Positives = 104/255 (40%), Gaps = 21/255 (8%)
Frame = +2
Query: 167 GTNTVGYKWVFVRNRIMKG*IA*YKV**LHKGFS------IGLIHSPMIDANLFHLSNQY 328
G VGYKWVFVR R K + YK + +GFS +SP++DA
Sbjct: 143 GVKPVGYKWVFVRKRNEKNEVTRYKARLVAQGFSQMPGIDYDETYSPVVDAT-------- 194
Query: 329 VIRMVMIHIWDMGNR*RIRME*L*WR*STQVGFAQSN*DDSFMV*SNPAGYDTII*ENIQ 508
+R + +W NR + ++ E +
Sbjct: 195 TLRFLSGRLWH--NRLS----------------------------------EYLLKEGFK 218
Query: 509 *LQSHMPVYV*RKSNNGFMILVVYMDR-------GELEITTYYLIWDLRGRILKETTFCL 667
Q V++ ++S +GF I+VVY+D ELE T YL+ + + L +T FCL
Sbjct: 219 NNQISPCVFI-KRSKSGFAIIVVYVDDLNIIGTPRELEATGKYLMKEFEMKDLGKTKFCL 277
Query: 668 G**-----KGILVVSLYTNSNILKKT*NNFMDNCNPISTHGYKTNLI---DSFHPKVEDM 823
G GI V ILK FMD +PIS+ +L D F P+ E+
Sbjct: 278 GLQMEHLRNGIFVHQSNYTEKILKCF---FMDKAHPISSPMVVRSLNEKDDPFRPREENE 334
Query: 824 EILDTKFSYLSASGA 868
EIL + YLSA GA
Sbjct: 335 EILGPEVPYLSAIGA 349
Score = 37.4 bits (85), Expect(2) = 9e-12
Identities = 21/44 (47%), Positives = 26/44 (59%)
Frame = +3
Query: 918 TTLDIAFSVNLMVRFGVAPIRKQCNSVK*TLGYLNRIIGLRLCY 1049
T LDIAFSVNL+ R+ AP ++ N V+ L YL L L Y
Sbjct: 357 TRLDIAFSVNLLARYINAPTKRHWNGVRHLLRYLRGTQDLGLFY 400
>emb|CAN69821.1| hypothetical protein VITISV_030674 [Vitis vinifera]
Length = 570
Score = 47.8 bits (112), Expect(2) = 5e-11
Identities = 23/47 (48%), Positives = 30/47 (63%)
Frame = +3
Query: 909 SKCTTLDIAFSVNLMVRFGVAPIRKQCNSVK*TLGYLNRIIGLRLCY 1049
+ CT LDIAFSVNL+ R+ AP R+ N +K L YL+ I + L Y
Sbjct: 456 ANCTHLDIAFSVNLLARYSFAPTRRHWNGIKHILRYLHGTIDMSLFY 502
Score = 47.4 bits (111), Expect(2) = 5e-11
Identities = 43/126 (34%), Positives = 60/126 (47%), Gaps = 17/126 (13%)
Frame = +2
Query: 542 RKSNNGFMILVVYMDR-------GELEITTYYLIWDLRGRILKETTFCLG**KGILVVSL 700
+KS F+I+ VY+D EL T YL + + L +T FCLG L +
Sbjct: 331 KKSETRFVIIAVYVDDLNLVGTPKELIRITNYLNKEFEMKDLGKTKFCLG-----LQIEY 385
Query: 701 YTN------SNILKKT*NNF-MDNCNPISTHGYKTNLI---DSFHPKVEDMEILDTKFSY 850
+ N S +KK F MD +P+S+ +L DSFHP +D E+L + Y
Sbjct: 386 FPNGVLVHQSTYIKKVLKRFYMDKAHPLSSPMVVRSLDVKKDSFHPCEKDEELLGHEVLY 445
Query: 851 LSASGA 868
LSA GA
Sbjct: 446 LSAIGA 451
>emb|CAN66208.1| hypothetical protein VITISV_035070 [Vitis vinifera]
Length = 1496
Score = 47.8 bits (112), Expect(2) = 1e-09
Identities = 42/124 (33%), Positives = 59/124 (47%), Gaps = 15/124 (12%)
Frame = +2
Query: 542 RKSNNGFMILVVYMDR-------GELEITTYYLIWDLRGRILKETTFCLG**-----KGI 685
+KS GF I+ VY+D EL TT YL + + L +T FCLG G+
Sbjct: 1142 KKSETGFAIIAVYVDDLNLVGTPEELTRTTNYLKKEFEMKDLGKTKFCLGLQIEHFPNGV 1201
Query: 686 LVVSLYTNSNILKKT*NNFMDNCNPISTHGYKTNLI---DSFHPKVEDMEILDTKFSYLS 856
LV +LK+ +MD +P+S+ +L D F P +D E+L + YLS
Sbjct: 1202 LVHQSTYIKKVLKRF---YMDKAHPLSSPMVVRSLDVKKDPFRPCEKDEELLGPEVPYLS 1258
Query: 857 ASGA 868
A GA
Sbjct: 1259 AIGA 1262
Score = 42.7 bits (99), Expect(2) = 1e-09
Identities = 21/47 (44%), Positives = 27/47 (57%)
Frame = +3
Query: 909 SKCTTLDIAFSVNLMVRFGVAPIRKQCNSVK*TLGYLNRIIGLRLCY 1049
+ CT DIAFSVNL+ R+ AP R+ N +K L YL + L Y
Sbjct: 1267 ANCTRPDIAFSVNLLARYSSAPTRRHWNGIKHILRYLRGTTDMSLFY 1313
>emb|CAN77974.1| hypothetical protein VITISV_006175 [Vitis vinifera]
Length = 1501
Score = 47.0 bits (110), Expect(2) = 3e-09
Identities = 42/124 (33%), Positives = 58/124 (46%), Gaps = 15/124 (12%)
Frame = +2
Query: 542 RKSNNGFMILVVYMDR-------GELEITTYYLIWDLRGRILKETTFCLG**-----KGI 685
+KS GF I+ VY+D EL TT YL + + L +T FCLG G+
Sbjct: 1147 KKSETGFAIIAVYVDDLNLVGTPEELTRTTNYLKKEFEMKDLGKTKFCLGLQIEHFPNGV 1206
Query: 686 LVVSLYTNSNILKKT*NNFMDNCNPISTHGYKTNLI---DSFHPKVEDMEILDTKFSYLS 856
LV +LK+ +MD +P+S+ +L D F P D E+L + YLS
Sbjct: 1207 LVHQSTYIKKVLKRF---YMDKAHPLSSPMVVRSLDVKKDPFRPCEXDEELLGPEVPYLS 1263
Query: 857 ASGA 868
A GA
Sbjct: 1264 AIGA 1267
Score = 42.4 bits (98), Expect(2) = 3e-09
Identities = 21/47 (44%), Positives = 27/47 (57%)
Frame = +3
Query: 909 SKCTTLDIAFSVNLMVRFGVAPIRKQCNSVK*TLGYLNRIIGLRLCY 1049
+ CT DIAFSVNL+ R+ AP R+ N +K L YL + L Y
Sbjct: 1272 ANCTRPDIAFSVNLLARYSSAPTRRHWNGIKHILRYLRGTTDMGLFY 1318
>emb|CAN79264.1| hypothetical protein VITISV_034881 [Vitis vinifera]
Length = 1360
Score = 46.2 bits (108), Expect(2) = 4e-09
Identities = 41/124 (33%), Positives = 59/124 (47%), Gaps = 15/124 (12%)
Frame = +2
Query: 542 RKSNNGFMILVVYMDR-------GELEITTYYLIWDLRGRILKETTFCLG**K-----GI 685
+KS GF I+ VY+D +L TT YL + + L +T FCLG G+
Sbjct: 1006 KKSETGFAIIAVYVDDLNLVGTPEDLTRTTNYLKKEFEMKDLGKTKFCLGLQNEHFPNGV 1065
Query: 686 LVVSLYTNSNILKKT*NNFMDNCNPISTHGYKTNLI---DSFHPKVEDMEILDTKFSYLS 856
LV +LK+ +MD +P+S+ +L D F P +D E+L + YLS
Sbjct: 1066 LVHQSTYIKKVLKRF---YMDKVHPLSSPMVVRSLDVKKDPFRPCEKDEELLGPEVPYLS 1122
Query: 857 ASGA 868
A GA
Sbjct: 1123 AIGA 1126
Score = 42.4 bits (98), Expect(2) = 4e-09
Identities = 21/47 (44%), Positives = 27/47 (57%)
Frame = +3
Query: 909 SKCTTLDIAFSVNLMVRFGVAPIRKQCNSVK*TLGYLNRIIGLRLCY 1049
+ CT DIAFSVNL+ R+ AP R+ N +K L YL + L Y
Sbjct: 1131 ANCTRPDIAFSVNLLARYSSAPTRRHWNGIKHILRYLRGTTDMGLFY 1177
>emb|CAN60947.1| hypothetical protein VITISV_015758 [Vitis vinifera]
Length = 1306
Score = 43.5 bits (101), Expect(2) = 3e-08
Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 15/124 (12%)
Frame = +2
Query: 542 RKSNNGFMILVVYMDR-------GELEITTYYLIWDLRGRILKETTFCLG**-----KGI 685
+KS F I+ VY+D EL TT YL + + L +T FCLG G+
Sbjct: 1026 KKSETRFAIIAVYVDDLNLVGTPEELTRTTNYLKKEFEMKDLGKTKFCLGLQIEHFPNGV 1085
Query: 686 LVVSLYTNSNILKKT*NNFMDNCNPISTHGYKTNLI---DSFHPKVEDMEILDTKFSYLS 856
LV +LK+ +MD +P+S+ +L D F P +D E+L + YL+
Sbjct: 1086 LVHQSTYIKKVLKRF---YMDKAHPLSSPMVVRSLDVKKDPFRPCEKDEELLGPEVPYLN 1142
Query: 857 ASGA 868
A GA
Sbjct: 1143 AIGA 1146
Score = 42.4 bits (98), Expect(2) = 3e-08
Identities = 21/47 (44%), Positives = 27/47 (57%)
Frame = +3
Query: 909 SKCTTLDIAFSVNLMVRFGVAPIRKQCNSVK*TLGYLNRIIGLRLCY 1049
+ CT DIAFSVNL+ R+ AP R+ N +K L YL + L Y
Sbjct: 1151 ANCTRPDIAFSVNLLARYSSAPTRRHWNGIKHILRYLRGTTDMGLFY 1197
>emb|CAN76956.1| hypothetical protein VITISV_022305 [Vitis vinifera]
Length = 973
Score = 45.1 bits (105), Expect(2) = 4e-08
Identities = 43/126 (34%), Positives = 57/126 (45%), Gaps = 17/126 (13%)
Frame = +2
Query: 542 RKSNNGFMILVVYMDR-------GELEITTYYLIWDLRGRILKETTFCLG**KGILVVSL 700
+KS GF I+ VY+D EL TT YL + + +T FCLG L +
Sbjct: 619 KKSEIGFAIIAVYVDDLNLVGTPKELTRTTNYLKXEFEMKDXGKTKFCLG-----LQIEH 673
Query: 701 YTN------SNILKKT*NNF-MDNCNPISTHGYKTNLI---DSFHPKVEDMEILDTKFSY 850
+ N S +KK F MD +P+S+ +L D F P D E+L K Y
Sbjct: 674 FPNGVLVHQSTYIKKVLKCFYMDKXHPLSSPMVVRSLDVKKDPFRPCENDEELLGPKVPY 733
Query: 851 LSASGA 868
LSA GA
Sbjct: 734 LSAIGA 739
Score = 40.4 bits (93), Expect(2) = 4e-08
Identities = 20/47 (42%), Positives = 26/47 (55%)
Frame = +3
Query: 909 SKCTTLDIAFSVNLMVRFGVAPIRKQCNSVK*TLGYLNRIIGLRLCY 1049
+ CT DIAFSVNL+ R+ P R+ N +K L YL + L Y
Sbjct: 744 ANCTRPDIAFSVNLLARYNSXPTRRHWNGIKHILRYLRGTTDMGLFY 790
>emb|CAN68953.1| hypothetical protein VITISV_016199 [Vitis vinifera]
Length = 952
Score = 44.7 bits (104), Expect(2) = 4e-08
Identities = 43/125 (34%), Positives = 59/125 (47%), Gaps = 16/125 (12%)
Frame = +2
Query: 542 RKSNNGFMILVVYMD-------RGELEITTYYLIWDLRGRILKETTFCLG-----**KGI 685
+KS GF I+ VY+D EL TT YL + + L +T FCLG G+
Sbjct: 666 KKSETGFAIIAVYVDDLNIVETPKELIRTTNYLKKEFEMKDLGKTKFCLGLQIKHFPNGV 725
Query: 686 LVVSLYTNSNILKKT*NNF-MDNCNPISTHGYKTNL---IDSFHPKVEDMEILDTKFSYL 853
LV S +KK +F MD +P+S+ +L D F +D E+L + YL
Sbjct: 726 LV----XQSTYIKKVLKHFYMDKXHPLSSPMVVXSLDVKKDXFRXXEKDEELLGPEVXYL 781
Query: 854 SASGA 868
SA GA
Sbjct: 782 SAIGA 786
Score = 40.8 bits (94), Expect(2) = 4e-08
Identities = 20/47 (42%), Positives = 27/47 (57%)
Frame = +3
Query: 909 SKCTTLDIAFSVNLMVRFGVAPIRKQCNSVK*TLGYLNRIIGLRLCY 1049
+ C + DIAFS NL+VR+ AP R+ N +K L YL + L Y
Sbjct: 791 ANCXSPDIAFSXNLLVRYSSAPTRRHWNGIKHILRYLRGTTDMSLFY 837
>emb|CAN80162.1| hypothetical protein VITISV_038102 [Vitis vinifera]
Length = 701
Score = 44.3 bits (103), Expect(2) = 4e-08
Identities = 22/47 (46%), Positives = 28/47 (59%)
Frame = +3
Query: 909 SKCTTLDIAFSVNLMVRFGVAPIRKQCNSVK*TLGYLNRIIGLRLCY 1049
+ CT DIAFSVNL+ R+ AP R+ N +K L YL I + L Y
Sbjct: 472 ANCTRPDIAFSVNLLARYSSAPTRRHWNGIKHILCYLRXTIDMGLFY 518
Score = 41.2 bits (95), Expect(2) = 4e-08
Identities = 40/123 (32%), Positives = 55/123 (44%), Gaps = 14/123 (11%)
Frame = +2
Query: 542 RKSNNGFMILVVYMD-------RGELEITTYYLIWDLRGRILKETTFCLG**KGILVVSL 700
+KS GF I+ VY+D EL TT YL + + L +T FCLG L V
Sbjct: 358 KKSETGFAIIAVYVDDLNLVGTSEELTRTTNYLKKEFEMKDLGKTKFCLG-----LQVEH 412
Query: 701 YTN------SNILKKT*NNF-MDNCNPISTHGYKTNLIDSFHPKVEDMEILDTKFSYLSA 859
+ N S +KK F MD +P+S+ +L +D E+L + YL A
Sbjct: 413 FPNGVLVHQSTYIKKVLKRFYMDKAHPLSSPMVVRSL--------DDEELLGPEVPYLXA 464
Query: 860 SGA 868
GA
Sbjct: 465 IGA 467
>gb|AEL30347.1| copia-like polyprotein [Arachis hypogaea]
Length = 692
Score = 49.7 bits (117), Expect(3) = 5e-08
Identities = 41/125 (32%), Positives = 57/125 (45%), Gaps = 13/125 (10%)
Frame = +1
Query: 409 KYPSGICTIKLRR*LYGLKQSGWI*YNHIRKY------------PMITIPYARICLKEI* 552
+Y G+ ++KL+R LYGLKQSG + YN + +Y P + I I
Sbjct: 364 EYSQGLYSVKLQRSLYGLKQSGRMWYNRLTEYLAKNGFKNDDICPCVFIKKTTSGFIIIA 423
Query: 553 *WFHDPSSLYG*R*VGNYYLLLDMGFKGKDLERNHILSWL-IERNTRGIFVHQLQYTKKN 729
+ D + + + L F+ KDL R L IE GIF+HQ YT+K
Sbjct: 424 VYVDDLNIIGTPEEIPTIIKTLKEEFEMKDLGRTKFCFDLQIEHTKNGIFIHQATYTEKI 483
Query: 730 LK*FY 744
LK FY
Sbjct: 484 LKRFY 488
Score = 32.3 bits (72), Expect(3) = 5e-08
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Frame = +2
Query: 179 VGYKWVFVRNRIMKG*IA*YKV**LHKGFS------IGLIHSPMIDANLFHLSNQYVIRM 340
VGY+WVFVR R K + YK + +GFS +SP++DA ++ Y++ +
Sbjct: 267 VGYQWVFVRKRNKKNEVVRYKARLMAQGFSQRPGIDYEETYSPVMDA----ITLSYLVSL 322
Query: 341 VMIH 352
H
Sbjct: 323 SAYH 326
Score = 22.3 bits (46), Expect(3) = 5e-08
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = +1
Query: 37 PHIINECRQINGQNLWRRL 93
P ++ ECRQ N W+ +
Sbjct: 222 PRLVEECRQKNDWPKWKEV 240
>ref|XP_004305666.1| PREDICTED: uncharacterized protein LOC101305583 [Fragaria vesca
subsp. vesca]
Length = 2430
Score = 46.6 bits (109), Expect(2) = 6e-08
Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 15/124 (12%)
Frame = +2
Query: 542 RKSNNGFMILVVYMDR-------GELEITTYYLIWDLRGRILKETTFCLG**-----KGI 685
+K+++GF I+ VY+D EL+ T YL + + L +T FCLG GI
Sbjct: 1752 KKTSSGFAIVAVYVDDMNIIGTLDELKDTAKYLKSEFEMKNLGKTRFCLGLELEHRSSGI 1811
Query: 686 LVVSLYTNSNILKKT*NNFMDNCNPISTHGYKTNLI---DSFHPKVEDMEILDTKFSYLS 856
LV + ++ + K MD + +ST +L D F PK ED E+L + YLS
Sbjct: 1812 LV---HQSAYVHKMLRRFNMDKVHSVSTPMIVRSLDPKKDPFRPKDEDEEVLGAEVPYLS 1868
Query: 857 ASGA 868
A GA
Sbjct: 1869 AVGA 1872
Score = 38.1 bits (87), Expect(2) = 6e-08
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +3
Query: 909 SKCTTLDIAFSVNLMVRFGVAPIRKQCNSVK*TLGYLNRIIGLRLCY 1049
++CT DI+F+VNL+ RF AP ++ +K YL I + L Y
Sbjct: 1877 AQCTRPDISFAVNLLARFSSAPTQRHWTGIKTIFRYLKGTIDMGLFY 1923
>emb|CAN60706.1| hypothetical protein VITISV_043852 [Vitis vinifera]
Length = 805
Score = 42.7 bits (99), Expect(2) = 1e-07
Identities = 21/47 (44%), Positives = 27/47 (57%)
Frame = +3
Query: 909 SKCTTLDIAFSVNLMVRFGVAPIRKQCNSVK*TLGYLNRIIGLRLCY 1049
+ CT DIAFSVNL+ R+ AP R+ N +K L YL + L Y
Sbjct: 576 ANCTRSDIAFSVNLLARYSSAPTRRHWNGIKHILRYLRGTTDMGLFY 622
Score = 40.8 bits (94), Expect(2) = 1e-07
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Frame = +2
Query: 542 RKSNNGFMILVVYMD-------RGELEITTYYLIWDLRGRILKETTFCLG**-----KGI 685
+KS F I+ VY+D EL TT YL + + L +T FCL G+
Sbjct: 451 KKSETEFAIIAVYVDDLNLVGTSEELTRTTNYLKKEFEXKDLGKTKFCLXLQIEHFPNGV 510
Query: 686 LVVSLYTNSNILKKT*NNFMDNCNPISTHGYKTNLI---DSFHPKVEDMEILDTKFSYLS 856
LV +LK+ +MD +P+S+ +L D F P +D E+L + YLS
Sbjct: 511 LVHQSTXIKKVLKRF---YMDKAHPLSSPIVVRSLDVKKDPFRPCEKDEELLGPEVPYLS 567
Query: 857 ASGA 868
A A
Sbjct: 568 AISA 571
>ref|XP_004295873.1| PREDICTED: uncharacterized protein LOC101296759 [Fragaria vesca
subsp. vesca]
Length = 3273
Score = 42.7 bits (99), Expect(2) = 2e-07
Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 13/122 (10%)
Frame = +2
Query: 542 RKSNNGFMILVVYMDR-------GELEITTYYLIWDLRGRILKETTFCLG**---KGILV 691
+++++GF I+ VY+D E+ T YL + + L T FCLG +G +
Sbjct: 2058 KRTSSGFTIVAVYVDDMNIIGNLNEINETVSYLKSEFEMKDLGRTRFCLGIELEHRGTRI 2117
Query: 692 VSLYTNSNILKKT*NNFMDNCNPISTHGYKTNLI---DSFHPKVEDMEILDTKFSYLSAS 862
+ ++ ++ + K MD +P+ T +L D F PK +D EIL + YLSA
Sbjct: 2118 L-IHQSAYVQKMLRRFNMDKAHPLGTPMITRSLDIKKDLFCPKDDDEEILGVETPYLSAI 2176
Query: 863 GA 868
GA
Sbjct: 2177 GA 2178
Score = 40.4 bits (93), Expect(2) = 2e-07
Identities = 21/47 (44%), Positives = 26/47 (55%)
Frame = +3
Query: 909 SKCTTLDIAFSVNLMVRFGVAPIRKQCNSVK*TLGYLNRIIGLRLCY 1049
++CT DIAFSVNL+ RF P + N VK YL I L L +
Sbjct: 2183 AQCTRSDIAFSVNLLARFSSTPTHRHWNGVKHIFRYLKGSIDLGLFF 2229
>emb|CAE01490.1| P0041A24.2 [Oryza sativa Japonica Group]
Length = 1376
Score = 45.8 bits (107), Expect(2) = 2e-07
Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 12/121 (9%)
Frame = +2
Query: 542 RKSNNGFMILVVYMDRGELEITTY-------YLIWDLRGRILKETTFCLG**KGILVVSL 700
+KS NGF I+ VY+D + TT YL + + L +T FCLG L +
Sbjct: 1026 KKSLNGFCIISVYVDDLNIIGTTEDIKEAMAYLKTEFEMKDLGKTKFCLGLQLEHLPEGV 1085
Query: 701 YTN-SNILKKT*NNF-MDNCNPISTHGYKTNLI---DSFHPKVEDMEILDTKFSYLSASG 865
+ + S K+ F MD C+P+ T +L D F PK +D ++L + YL+A G
Sbjct: 1086 FMHQSTYTKRVLGKFNMDKCHPLKTPMVVRSLEADKDPFKPKEDDEKVLGPEVPYLNAIG 1145
Query: 866 A 868
A
Sbjct: 1146 A 1146
Score = 37.4 bits (85), Expect(2) = 2e-07
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +3
Query: 909 SKCTTLDIAFSVNLMVRFGVAPIRKQCNSVK*TLGYL 1019
+ CT DIAF+VNL+ R+ AP R+ VK L YL
Sbjct: 1151 ANCTRPDIAFAVNLLARYSAAPTRRHWVGVKTILRYL 1187
>dbj|BAF36296.1| hypothetical protein [Ipomoea trifida]
Length = 1291
Score = 44.3 bits (103), Expect(2) = 2e-07
Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 15/124 (12%)
Frame = +2
Query: 542 RKSNNGFMILVVYMDRGELEITTY-------YLIWDLRGRILKETTFCLG**-----KGI 685
+KS+NGF I+ VY+D + T YL + + L +T FCLG GI
Sbjct: 833 KKSSNGFCIISVYVDDMNIIGTNKDIIEACSYLKAEFEMKDLGKTKFCLGLQIEHLPNGI 892
Query: 686 LVVSLYTNSNILKKT*NNFMDNCNPISTHGYKTNLI---DSFHPKVEDMEILDTKFSYLS 856
+ + +L+K +MD +P+ST +L D F PK ++ +IL + YLS
Sbjct: 893 FIHQANYVNKLLEKF---YMDKSHPLSTPMVVRSLEADKDPFRPKEDNEDILGPEVPYLS 949
Query: 857 ASGA 868
A GA
Sbjct: 950 AIGA 953
Score = 38.5 bits (88), Expect(2) = 2e-07
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +3
Query: 909 SKCTTLDIAFSVNLMVRFGVAPIRKQCNSVK*TLGYL 1019
+ CT DIAFSVNL+ RF +P R+ + VK YL
Sbjct: 958 ANCTRPDIAFSVNLLARFSASPTRRHWSGVKHIFRYL 994
>gb|AAS79613.1| putative copia-like polyprotein [Ipomoea trifida]
Length = 1190
Score = 44.3 bits (103), Expect(2) = 2e-07
Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 15/124 (12%)
Frame = +2
Query: 542 RKSNNGFMILVVYMDRGELEITTY-------YLIWDLRGRILKETTFCLG**-----KGI 685
+KS+NGF I+ VY+D + T YL + + L +T FCLG GI
Sbjct: 833 KKSSNGFCIISVYVDDMNIIGTNKDIIEACSYLKAEFEMKDLGKTKFCLGLQIEHLPNGI 892
Query: 686 LVVSLYTNSNILKKT*NNFMDNCNPISTHGYKTNLI---DSFHPKVEDMEILDTKFSYLS 856
+ + +L+K +MD +P+ST +L D F PK ++ +IL + YLS
Sbjct: 893 FIHQANYVNKLLEKF---YMDKSHPLSTPMVVRSLEADKDPFRPKEDNEDILGPEVPYLS 949
Query: 857 ASGA 868
A GA
Sbjct: 950 AIGA 953
Score = 38.5 bits (88), Expect(2) = 2e-07
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +3
Query: 909 SKCTTLDIAFSVNLMVRFGVAPIRKQCNSVK*TLGYL 1019
+ CT DIAFSVNL+ RF +P R+ + VK YL
Sbjct: 958 ANCTRPDIAFSVNLLARFSASPTRRHWSGVKHIFRYL 994
>gb|ABF96803.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1469
Score = 44.3 bits (103), Expect(2) = 4e-07
Identities = 40/120 (33%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Frame = +2
Query: 542 RKSNNGFMILVVYMD-------RGELEITTYYLIWDLRGRILKETTFCLG**KGILVVSL 700
+KS NGF I+ VY+D ++E + YL + + L +T FCLG L +
Sbjct: 1119 KKSENGFCIISVYVDDLNIIGTTRDIEEASTYLKAEFEMKDLGKTKFCLGLQLEHLPKGV 1178
Query: 701 YTN-SNILKKT*NNF-MDNCNPISTHGYKTNLI---DSFHPKVEDMEILDTKFSYLSASG 865
+ + S KK F MD +P+ T +L D F PK ED + L + YLSA G
Sbjct: 1179 FVHQSTYTKKVLEMFNMDKSHPLKTPMVVRSLEVDKDPFRPKEEDEKPLGPEVPYLSAIG 1238
Score = 37.7 bits (86), Expect(2) = 4e-07
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +3
Query: 909 SKCTTLDIAFSVNLMVRFGVAPIRKQCNSVK*TLGYL--NRIIGL 1037
+ CT DIAF+VNL+ R+ AP R+ VK L YL R +GL
Sbjct: 1244 TNCTRPDIAFAVNLLARYSAAPTRRHWVGVKTILKYLQGTRDLGL 1288
>gb|AAU89218.1| integrase core domain containing protein [Oryza sativa Japonica
Group]
Length = 1419
Score = 44.3 bits (103), Expect(2) = 4e-07
Identities = 40/120 (33%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Frame = +2
Query: 542 RKSNNGFMILVVYMD-------RGELEITTYYLIWDLRGRILKETTFCLG**KGILVVSL 700
+KS NGF I+ VY+D ++E + YL + + L +T FCLG L +
Sbjct: 1069 KKSENGFCIISVYVDDLNIIGTTRDIEEASTYLKAEFEMKDLGKTKFCLGLQLEHLPKGV 1128
Query: 701 YTN-SNILKKT*NNF-MDNCNPISTHGYKTNLI---DSFHPKVEDMEILDTKFSYLSASG 865
+ + S KK F MD +P+ T +L D F PK ED + L + YLSA G
Sbjct: 1129 FVHQSTYTKKVLEMFNMDKSHPLKTPMVVRSLEVDKDPFRPKEEDEKPLGPEVPYLSAIG 1188
Score = 37.7 bits (86), Expect(2) = 4e-07
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +3
Query: 909 SKCTTLDIAFSVNLMVRFGVAPIRKQCNSVK*TLGYL--NRIIGL 1037
+ CT DIAF+VNL+ R+ AP R+ VK L YL R +GL
Sbjct: 1194 TNCTRPDIAFAVNLLARYSAAPTRRHWVGVKTILKYLQGTRDLGL 1238
>gb|AAK91878.1|AC091665_4 Putative copia-type pol polyprotein [Oryza sativa]
gi|31430163|gb|AAP52115.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1225
Score = 48.1 bits (113), Expect(2) = 4e-07
Identities = 42/120 (35%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Frame = +2
Query: 545 KSNNGFMILVVYMDRGELEITTY-------YLIWDLRGRILKETTFCLG**KGILVVSLY 703
KS NGF I+ VY+D + TT YL + + L +T FCLG L ++
Sbjct: 876 KSLNGFCIISVYVDDFNIIGTTEDIKEAMAYLKTEFEMKDLGKTKFCLGLQLKHLPEGVF 935
Query: 704 TN-SNILKKT*NNF-MDNCNPISTHGYKTNLI---DSFHPKVEDMEILDTKFSYLSASGA 868
+ S K+ F MD C+P+ T +L D F PK +D E+L + YLSA GA
Sbjct: 936 MHQSTYTKRVLGKFNMDKCHPLKTPMVVRSLEADKDPFKPKEDDEEVLGPEVPYLSAIGA 995
Score = 33.9 bits (76), Expect(2) = 4e-07
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +3
Query: 909 SKCTTLDIAFSVNLMVRFGVAPIRKQCNSVK*TLGYL 1019
+ CT +IAF+VNL+ R+ P R+ VK L YL
Sbjct: 1000 ANCTRPNIAFAVNLLARYSATPTRRHWVGVKTILKYL 1036
>gb|AAK84483.1| putative copia-like polyprotein [Solanum lycopersicum]
Length = 779
Score = 43.1 bits (100), Expect(2) = 4e-07
Identities = 40/119 (33%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Frame = +1
Query: 427 CTIKLRR*LYGLKQSGWI*YNHIRKY------------PMITIPYARICLKEI**WFHDP 570
C+IKL++ LYGLKQSG + YN + +Y P I I I + D
Sbjct: 515 CSIKLQKSLYGLKQSGRMWYNRLSEYLLKKGYKNDSICPCIFIKRLGSEFVIIAVYVDDL 574
Query: 571 SSLYG*R*VGNYYLLLDMGFKGKDLERNHI-LSWLIERNTRGIFVHQLQYTKKNLK*FY 744
+ + + + L F+ KDL + L IE + GI VHQ YT+K LK FY
Sbjct: 575 NIIGTRKELLEAVECLKREFEMKDLGKTKFCLGLQIENLSNGILVHQSTYTEKILKRFY 633
Score = 38.9 bits (89), Expect(2) = 4e-07
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Frame = +2
Query: 167 GTNTVGYKWVFVRNRIMKG*IA*YKV**LHKGFS--IGL----IHSPMIDANLF-HLSNQ 325
G VGYKW+FVR R KG + YK + +GFS G+ +SP++DA F +L N
Sbjct: 409 GIKPVGYKWIFVRKRNEKGEVMRYKARLVAQGFSQRPGIDYMETYSPVVDAITFRYLINL 468
Query: 326 YVIRMVMIHIWDM 364
V + + + D+
Sbjct: 469 AVYEKLEMRLMDV 481