BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia25_contig00008433
         (1671 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   816   0.0  
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...   803   0.0  
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [...   800   0.0  
ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   788   0.0  
emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]   783   0.0  
gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]       782   0.0  
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      777   0.0  
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      777   0.0  
ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th...   773   0.0  
emb|CAN82568.1| hypothetical protein VITISV_040047 [Vitis vinifera]   772   0.0  
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   771   0.0  
ref|XP_007225261.1| hypothetical protein PRUPE_ppa001524mg [Prun...   766   0.0  
ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis...   764   0.0  
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa...   756   0.0  
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]       749   0.0  
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   744   0.0  
emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida]       743   0.0  
gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus...   739   0.0  
ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Caps...   738   0.0  
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper...   738   0.0  

>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score =  816 bits (2107), Expect = 0.0
 Identities = 394/487 (80%), Positives = 434/487 (89%)
 Frame = -1

Query: 1671 LGVRDFVFEKKQREVIAQLDAILKDPLRAQDALELMSPGENTNILNEMLMCGYKPDDEPF 1492
            LG+ D +FEKKQRE + QLDAIL DPL+AQ+ALELMSPGENTNIL E+L+CGYKPD EPF
Sbjct: 631  LGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPF 690

Query: 1491 LSMMLQIFRASKLLELRTKTRIFVPDGRSMMGCLDETRTLNYGQVFVQISGTGHRQLCDN 1312
            LSMMLQ FRASKLLELRTKTRIF+P+GRSMMGCLDETRTLNYGQVFVQISG G+RQL   
Sbjct: 691  LSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGE 750

Query: 1311 SLLFCSSSLDQRNYIVEGDVVVAKNPCLHPGDVRVLRAVNVPSLHHMVDCIIFPQKGKRP 1132
            S LF SS   QR +IV+G VVVAKNPCLHPGDVRVL+AVNVP+LHHMVDC++FPQKG RP
Sbjct: 751  SSLFSSSRSRQR-FIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRP 809

Query: 1131 HPNECSGSDLDGDIYFVCWDPELIPPRQTEPMDYTPAPSMQLDHDVTIEEVEEYFANYIV 952
            HPNECSGSDLDGDIYFVCWD ELIPP+Q  PMDYTPA SMQLDHDV IE+VEEYF NYIV
Sbjct: 810  HPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIV 869

Query: 951  NDSLGIIANAHTVFADREPTKAMSKPCLELAKLFSIAVDFPKTGVPAEIPPNLFAKEYPD 772
            NDSLGIIANAHTVFADREP KA S+PCL+LA+ FSIAVDFPKTGVPAEIPP+L+ KEYPD
Sbjct: 870  NDSLGIIANAHTVFADREPHKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPD 929

Query: 771  FMEKPDKPTYVSPNVIGKLFREVKDIAPHTSSIRTFTHDVARRSYDPDMEVDGFENHIDD 592
            FMEKPDKPTY S NVIGKLFR VKDIAPHTS IR FT +VARRSYDPDMEVDGFE+HIDD
Sbjct: 930  FMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDD 989

Query: 591  AFYHKSNYDYKLGNLLDYYGIKSEAEILSGNIMKMSKSFNRRRDTEAIVMAVRSLRKEAR 412
            A YHK NYDYKLGNL+DYYGIK+EAEIL+G+IMKMSKSF +RRD EAI MAVR+LRKEAR
Sbjct: 990  AIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEAR 1049

Query: 411  TWFNEKGSGLDSEDEDVYAKASAWYHVTYHHSYWGSYNEGMDRDHYISFPWCVYEKLIHI 232
             WF EK SG D+ED D YAKASAWYHVTYH  YWG YN GM+RDH++SFPWCVY++L+ I
Sbjct: 1050 AWFKEK-SGSDTED-DAYAKASAWYHVTYHPDYWGCYNHGMNRDHFLSFPWCVYDRLVEI 1107

Query: 231  KKEKINI 211
            KK+K +I
Sbjct: 1108 KKDKTSI 1114


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score =  803 bits (2073), Expect = 0.0
 Identities = 383/488 (78%), Positives = 429/488 (87%)
 Frame = -1

Query: 1671 LGVRDFVFEKKQREVIAQLDAILKDPLRAQDALELMSPGENTNILNEMLMCGYKPDDEPF 1492
            LGV+D VFEKKQR  + QLD ILKDP+ AQ+ALELMSPGENTN+L EMLMCGYKPD EPF
Sbjct: 616  LGVKDHVFEKKQRAAVDQLDTILKDPVAAQEALELMSPGENTNVLKEMLMCGYKPDAEPF 675

Query: 1491 LSMMLQIFRASKLLELRTKTRIFVPDGRSMMGCLDETRTLNYGQVFVQISGTGHRQLCDN 1312
            LSMMLQ FRA+KLLELRTKTRIFVP+GRSMMGCLDETRTL YG+VFVQISGTG RQ   +
Sbjct: 676  LSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGD 735

Query: 1311 SLLFCSSSLDQRNYIVEGDVVVAKNPCLHPGDVRVLRAVNVPSLHHMVDCIIFPQKGKRP 1132
            SL+F  S     N+I+EG +VVAKNPCLHPGDVRVL AVNVP+LHHMVDC++FPQKGKRP
Sbjct: 736  SLMFRGSGSHHDNFILEGKIVVAKNPCLHPGDVRVLWAVNVPTLHHMVDCVVFPQKGKRP 795

Query: 1131 HPNECSGSDLDGDIYFVCWDPELIPPRQTEPMDYTPAPSMQLDHDVTIEEVEEYFANYIV 952
            HPNECSGSDLDGDIYFVCWD +LIPP+Q  PMDYTPAP+  LDHDV IEEVEEYF NYIV
Sbjct: 796  HPNECSGSDLDGDIYFVCWDRDLIPPQQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIV 855

Query: 951  NDSLGIIANAHTVFADREPTKAMSKPCLELAKLFSIAVDFPKTGVPAEIPPNLFAKEYPD 772
            NDSLGIIANAHTVFAD+E  KA   PC ELAKLFSIAVDFPKTGVPAEIP NL  KEYPD
Sbjct: 856  NDSLGIIANAHTVFADKEYDKAYCDPCTELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPD 915

Query: 771  FMEKPDKPTYVSPNVIGKLFREVKDIAPHTSSIRTFTHDVARRSYDPDMEVDGFENHIDD 592
            FMEK DKPTY S +VIGKLFREVKDIAPH  +IR+FT DVAR+SYDPDMEV GFE+++ D
Sbjct: 916  FMEKADKPTYESQSVIGKLFREVKDIAPHNCNIRSFTRDVARQSYDPDMEVVGFEDYVSD 975

Query: 591  AFYHKSNYDYKLGNLLDYYGIKSEAEILSGNIMKMSKSFNRRRDTEAIVMAVRSLRKEAR 412
            AFY+KS YDYKLGNL+DYYGIK+E+EILSG+IM+MSKSF+RR+D EAI +AV+SLRKEAR
Sbjct: 976  AFYYKSEYDYKLGNLMDYYGIKTESEILSGSIMRMSKSFDRRKDAEAIGLAVKSLRKEAR 1035

Query: 411  TWFNEKGSGLDSEDEDVYAKASAWYHVTYHHSYWGSYNEGMDRDHYISFPWCVYEKLIHI 232
            TWFN+ GS  DSE +DVYAKASAWYHVTYH  YWG YNEGMDRDH++SFPWCVY+KLIH 
Sbjct: 1036 TWFNKMGSETDSEADDVYAKASAWYHVTYHPDYWGCYNEGMDRDHFLSFPWCVYDKLIHT 1095

Query: 231  KKEKINIR 208
            K++K++ R
Sbjct: 1096 KRKKMSGR 1103


>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
            family protein [Populus trichocarpa]
          Length = 1133

 Score =  800 bits (2065), Expect = 0.0
 Identities = 381/498 (76%), Positives = 437/498 (87%)
 Frame = -1

Query: 1671 LGVRDFVFEKKQREVIAQLDAILKDPLRAQDALELMSPGENTNILNEMLMCGYKPDDEPF 1492
            LGV D  FE+KQRE + QLDA+L DPLRAQ+ALELMSPGENTNIL EML+CGY+PD EPF
Sbjct: 627  LGVPDHHFERKQREAVDQLDAMLTDPLRAQEALELMSPGENTNILKEMLLCGYQPDAEPF 686

Query: 1491 LSMMLQIFRASKLLELRTKTRIFVPDGRSMMGCLDETRTLNYGQVFVQISGTGHRQLCDN 1312
            LSMMLQ FRASKLLELRTKTRIF+P+GRSMMGCLDETRTL +GQVFV+ SG+  R L D+
Sbjct: 687  LSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLEHGQVFVKFSGSRFRNLYDS 746

Query: 1311 SLLFCSSSLDQRNYIVEGDVVVAKNPCLHPGDVRVLRAVNVPSLHHMVDCIIFPQKGKRP 1132
            S +F      Q  Y+++G VVVAKNPCLHPGD+R+L+AV+VP+LHHMVDC++FPQKG RP
Sbjct: 747  SDMFSERGRGQC-YLIKGSVVVAKNPCLHPGDLRILKAVDVPALHHMVDCVVFPQKGPRP 805

Query: 1131 HPNECSGSDLDGDIYFVCWDPELIPPRQTEPMDYTPAPSMQLDHDVTIEEVEEYFANYIV 952
            HPNECSGSDLDGDIYFVCWDPELIP +Q  PMDYTP P +QLDHDVTIEEVEEYF NYIV
Sbjct: 806  HPNECSGSDLDGDIYFVCWDPELIPSQQISPMDYTPEPPLQLDHDVTIEEVEEYFTNYIV 865

Query: 951  NDSLGIIANAHTVFADREPTKAMSKPCLELAKLFSIAVDFPKTGVPAEIPPNLFAKEYPD 772
            NDSLG+IANAHT  AD+E  KAMS+PC+ELA+ FSIAVDFPKTGVPAEIP NL A+EYPD
Sbjct: 866  NDSLGVIANAHTAHADKESLKAMSEPCVELARKFSIAVDFPKTGVPAEIPSNLRAREYPD 925

Query: 771  FMEKPDKPTYVSPNVIGKLFREVKDIAPHTSSIRTFTHDVARRSYDPDMEVDGFENHIDD 592
            FMEKPDKP+Y S NVIGKLFREVKDIAP TSSIR+FT DVAR+ YDPDMEVDGFE++IDD
Sbjct: 926  FMEKPDKPSYESRNVIGKLFREVKDIAPRTSSIRSFTSDVARQCYDPDMEVDGFEDYIDD 985

Query: 591  AFYHKSNYDYKLGNLLDYYGIKSEAEILSGNIMKMSKSFNRRRDTEAIVMAVRSLRKEAR 412
            AFY+KSNYDYKLGNL++YYGIK+EAE+LSG+ MKMSKSF ++RD EAI MAVRSL+KEAR
Sbjct: 986  AFYYKSNYDYKLGNLMEYYGIKTEAELLSGSFMKMSKSFTKKRDAEAIGMAVRSLKKEAR 1045

Query: 411  TWFNEKGSGLDSEDEDVYAKASAWYHVTYHHSYWGSYNEGMDRDHYISFPWCVYEKLIHI 232
            +WFNEKGSGLDS+ +DV AKASAWYHVTYHH+YWG YNEGM+RDH++SFPWCVY+KLI I
Sbjct: 1046 SWFNEKGSGLDSQADDVDAKASAWYHVTYHHNYWGCYNEGMNRDHFLSFPWCVYDKLIQI 1105

Query: 231  KKEKINIRKRSELLSRVE 178
            K+      +RS +L  VE
Sbjct: 1106 KRRNSARIRRSLILPSVE 1123


>ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca subsp.
            vesca]
          Length = 1119

 Score =  788 bits (2034), Expect = 0.0
 Identities = 379/498 (76%), Positives = 436/498 (87%)
 Frame = -1

Query: 1671 LGVRDFVFEKKQREVIAQLDAILKDPLRAQDALELMSPGENTNILNEMLMCGYKPDDEPF 1492
            L V+D VF KKQR  + QL+AIL DPL+A++AL+LMS GE+TN+L E+LMCGYKP+ EPF
Sbjct: 618  LEVQDHVFLKKQRAAVQQLNAILTDPLKAEEALDLMSAGESTNVLKELLMCGYKPNVEPF 677

Query: 1491 LSMMLQIFRASKLLELRTKTRIFVPDGRSMMGCLDETRTLNYGQVFVQISGTGHRQLCDN 1312
            LSMMLQ FRASKLLELRTKTRIF+PDGR+MMGCLDETRTL YGQVFVQ SG   RQL D+
Sbjct: 678  LSMMLQTFRASKLLELRTKTRIFIPDGRAMMGCLDETRTLEYGQVFVQFSGKRRRQLFDD 737

Query: 1311 SLLFCSSSLDQRNYIVEGDVVVAKNPCLHPGDVRVLRAVNVPSLHHMVDCIIFPQKGKRP 1132
              +   SSLD   +I+EG VVVAKNPCLHPGDVRVLRAVNVP LHHMVDC++FPQKG RP
Sbjct: 738  ICIH--SSLDSC-FIIEGKVVVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGHRP 794

Query: 1131 HPNECSGSDLDGDIYFVCWDPELIPPRQTEPMDYTPAPSMQLDHDVTIEEVEEYFANYIV 952
            HPNECSGSDLDGDIYFVCWDPELIPP+Q +PMDYTPAP +++D DVTIEEVEEYF NYIV
Sbjct: 795  HPNECSGSDLDGDIYFVCWDPELIPPKQIQPMDYTPAPPIEMDQDVTIEEVEEYFVNYIV 854

Query: 951  NDSLGIIANAHTVFADREPTKAMSKPCLELAKLFSIAVDFPKTGVPAEIPPNLFAKEYPD 772
            NDSLGIIANAHTVFAD +  KAMS PCL+LAKLFSIAVDFPKTGVPAEIPP L+AKEYPD
Sbjct: 855  NDSLGIIANAHTVFADSKLDKAMSHPCLQLAKLFSIAVDFPKTGVPAEIPPELYAKEYPD 914

Query: 771  FMEKPDKPTYVSPNVIGKLFREVKDIAPHTSSIRTFTHDVARRSYDPDMEVDGFENHIDD 592
            FMEKPDK TY+S NVIG+LFREVKDIAPH SSI +FT  VA + YDPDMEVDGFE++++D
Sbjct: 915  FMEKPDKRTYISHNVIGQLFREVKDIAPHDSSIASFTRQVATKCYDPDMEVDGFEDYLED 974

Query: 591  AFYHKSNYDYKLGNLLDYYGIKSEAEILSGNIMKMSKSFNRRRDTEAIVMAVRSLRKEAR 412
            AFYHK NYDYKLGN+LDYYGIK+EAEILSG+IM +SKSF +RRD +AI +AV+SLRKEAR
Sbjct: 975  AFYHKGNYDYKLGNMLDYYGIKTEAEILSGSIMTLSKSFTKRRDADAINVAVKSLRKEAR 1034

Query: 411  TWFNEKGSGLDSEDEDVYAKASAWYHVTYHHSYWGSYNEGMDRDHYISFPWCVYEKLIHI 232
             WFNEK +G+DS D+DVYAKASAWYHVTYH +Y+G YNEGM+R H+ISFPWCV++KL HI
Sbjct: 1035 AWFNEKDTGIDSGDDDVYAKASAWYHVTYHPNYFGLYNEGMNRAHFISFPWCVFDKLGHI 1094

Query: 231  KKEKINIRKRSELLSRVE 178
            KKEK+N   ++ L+S +E
Sbjct: 1095 KKEKVN---QARLISSLE 1109


>emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]
          Length = 654

 Score =  783 bits (2023), Expect = 0.0
 Identities = 376/488 (77%), Positives = 423/488 (86%)
 Frame = -1

Query: 1671 LGVRDFVFEKKQREVIAQLDAILKDPLRAQDALELMSPGENTNILNEMLMCGYKPDDEPF 1492
            LGV+D VFEKKQR  + QLD ILKDP+ AQ+ALELMSPGENTN+L EMLMCGYKPD EPF
Sbjct: 158  LGVKDHVFEKKQRAAVDQLDTILKDPVAAQEALELMSPGENTNVLKEMLMCGYKPDAEPF 217

Query: 1491 LSMMLQIFRASKLLELRTKTRIFVPDGRSMMGCLDETRTLNYGQVFVQISGTGHRQLCDN 1312
            LSMMLQ FRA+KLLELRTKTRIFVP+GRSMMGCLDETRTL YG+VFVQISGTG RQ   +
Sbjct: 218  LSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGD 277

Query: 1311 SLLFCSSSLDQRNYIVEGDVVVAKNPCLHPGDVRVLRAVNVPSLHHMVDCIIFPQKGKRP 1132
            SL+F  S     N+I+EG +VVAKNPCLHPGDVRVL AVNVP+LHHMVDC++FPQKGKRP
Sbjct: 278  SLMFRGSGSHHDNFILEGKIVVAKNPCLHPGDVRVLXAVNVPTLHHMVDCVVFPQKGKRP 337

Query: 1131 HPNECSGSDLDGDIYFVCWDPELIPPRQTEPMDYTPAPSMQLDHDVTIEEVEEYFANYIV 952
            HPNECSGSDLDGDIYFVCWD +LIPP+Q  PMDYTPAP+         +EVEEYF NYIV
Sbjct: 338  HPNECSGSDLDGDIYFVCWDRDLIPPQQINPMDYTPAPT---------KEVEEYFTNYIV 388

Query: 951  NDSLGIIANAHTVFADREPTKAMSKPCLELAKLFSIAVDFPKTGVPAEIPPNLFAKEYPD 772
            NDSLGIIANAHTVFAD+E  KA   PC ELAKLFSIAVDFPKTGVPAEIP NL  KEYPD
Sbjct: 389  NDSLGIIANAHTVFADKEYDKAYCDPCTELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPD 448

Query: 771  FMEKPDKPTYVSPNVIGKLFREVKDIAPHTSSIRTFTHDVARRSYDPDMEVDGFENHIDD 592
            FMEK DKPTY S +VIGKLFREVKDIAPH  +IR+FT DVAR+SYDPDMEV GFE+++ D
Sbjct: 449  FMEKADKPTYESQSVIGKLFREVKDIAPHNCNIRSFTRDVARQSYDPDMEVVGFEDYVSD 508

Query: 591  AFYHKSNYDYKLGNLLDYYGIKSEAEILSGNIMKMSKSFNRRRDTEAIVMAVRSLRKEAR 412
            AFY+KS YDYKLGNL+DYYGIK+E+EILSG+IM+MSKSF+RR+D EAI +AV+SLRKEAR
Sbjct: 509  AFYYKSEYDYKLGNLMDYYGIKTESEILSGSIMRMSKSFDRRKDAEAIGLAVKSLRKEAR 568

Query: 411  TWFNEKGSGLDSEDEDVYAKASAWYHVTYHHSYWGSYNEGMDRDHYISFPWCVYEKLIHI 232
            TWFN+ GS  DSE +DVYAKASAWYHVTYH  YWG YNEGMDRDH++SFPWCVY+KLIH 
Sbjct: 569  TWFNKMGSETDSEADDVYAKASAWYHVTYHPDYWGCYNEGMDRDHFLSFPWCVYDKLIHT 628

Query: 231  KKEKINIR 208
            K++K++ R
Sbjct: 629  KRKKMSGR 636


>gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
          Length = 1133

 Score =  782 bits (2020), Expect = 0.0
 Identities = 373/495 (75%), Positives = 426/495 (86%)
 Frame = -1

Query: 1671 LGVRDFVFEKKQREVIAQLDAILKDPLRAQDALELMSPGENTNILNEMLMCGYKPDDEPF 1492
            LGV D VFEKKQRE + QL+AIL DPLRA++AL+LMS GE TNIL E+L CGY+P+ EPF
Sbjct: 628  LGVGDRVFEKKQREAVQQLNAILNDPLRAREALDLMSAGETTNILKELLSCGYQPNAEPF 687

Query: 1491 LSMMLQIFRASKLLELRTKTRIFVPDGRSMMGCLDETRTLNYGQVFVQISGTGHRQLCDN 1312
            LSMMLQ FRASKL ELRTKTRI +PDGR+MMGCLDE RTL YG+VFVQ SG  HR   ++
Sbjct: 688  LSMMLQAFRASKLQELRTKTRISIPDGRAMMGCLDEMRTLEYGEVFVQFSGITHRPFFED 747

Query: 1311 SLLFCSSSLDQRNYIVEGDVVVAKNPCLHPGDVRVLRAVNVPSLHHMVDCIIFPQKGKRP 1132
            S +   +   Q NYIV G VVVAKNPCLHPGDVRVLRAVNVP+LHHMVDC++FPQKG RP
Sbjct: 748  SFMLGGTGSGQ-NYIVVGRVVVAKNPCLHPGDVRVLRAVNVPALHHMVDCVVFPQKGSRP 806

Query: 1131 HPNECSGSDLDGDIYFVCWDPELIPPRQTEPMDYTPAPSMQLDHDVTIEEVEEYFANYIV 952
            HPNECSGSDLDGDIYFVCWD ELIP +Q EPMDY+PAP+ +LDHDV IEEV+EYF NYIV
Sbjct: 807  HPNECSGSDLDGDIYFVCWDDELIPQKQFEPMDYSPAPTTRLDHDVRIEEVQEYFTNYIV 866

Query: 951  NDSLGIIANAHTVFADREPTKAMSKPCLELAKLFSIAVDFPKTGVPAEIPPNLFAKEYPD 772
            NDSLGIIANAHT FAD+EP+KAMS  C+ELA+LFSIAVDFPKTGVPA IP  L+ KEYPD
Sbjct: 867  NDSLGIIANAHTAFADKEPSKAMSPSCIELARLFSIAVDFPKTGVPAVIPQELYVKEYPD 926

Query: 771  FMEKPDKPTYVSPNVIGKLFREVKDIAPHTSSIRTFTHDVARRSYDPDMEVDGFENHIDD 592
            FMEK +KPTY S NVIGKLFREVKDIAP+  S+  FT +VA RSYDPDME DGFE++IDD
Sbjct: 927  FMEKLNKPTYESQNVIGKLFREVKDIAPNVGSLHFFTKEVASRSYDPDMEYDGFEDYIDD 986

Query: 591  AFYHKSNYDYKLGNLLDYYGIKSEAEILSGNIMKMSKSFNRRRDTEAIVMAVRSLRKEAR 412
            AFY+KSNYDYKLGNLLDYYGIKSEAEI+ G+IM+MSKSF +RRD E+I MAVR+LRKEAR
Sbjct: 987  AFYYKSNYDYKLGNLLDYYGIKSEAEIIGGSIMRMSKSFTKRRDAESINMAVRALRKEAR 1046

Query: 411  TWFNEKGSGLDSEDEDVYAKASAWYHVTYHHSYWGSYNEGMDRDHYISFPWCVYEKLIHI 232
            TWFNEKGS LDS  +DVYAKASAWY+VTYHHSYWG YNEGM+RDHY+SFPWCVY+KL+ I
Sbjct: 1047 TWFNEKGSSLDSAADDVYAKASAWYYVTYHHSYWGCYNEGMNRDHYLSFPWCVYDKLVQI 1106

Query: 231  KKEKINIRKRSELLS 187
            K+ K ++R+  ++ S
Sbjct: 1107 KRSKASVRRSLQMSS 1121


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  777 bits (2007), Expect = 0.0
 Identities = 372/495 (75%), Positives = 421/495 (85%)
 Frame = -1

Query: 1671 LGVRDFVFEKKQREVIAQLDAILKDPLRAQDALELMSPGENTNILNEMLMCGYKPDDEPF 1492
            LGV D  FEKKQREV+ QL+A+L DPL AQ+ALELMSPGENTNIL EML+CGYKPD EPF
Sbjct: 620  LGVPDRAFEKKQREVVDQLNALLTDPLEAQEALELMSPGENTNILKEMLLCGYKPDAEPF 679

Query: 1491 LSMMLQIFRASKLLELRTKTRIFVPDGRSMMGCLDETRTLNYGQVFVQISGTGHRQLCDN 1312
            LSMML+ FRASKLLELRTK RIFV  GRSMMGCLDETRTLNYGQVFVQ SG         
Sbjct: 680  LSMMLETFRASKLLELRTKARIFVQKGRSMMGCLDETRTLNYGQVFVQFSG--------- 730

Query: 1311 SLLFCSSSLDQRNYIVEGDVVVAKNPCLHPGDVRVLRAVNVPSLHHMVDCIIFPQKGKRP 1132
                   S  +R +IV+G V+VAKNPCLHPGDVRVLRAVNVP LHHMVDC++FPQKG RP
Sbjct: 731  -------SRSERRFIVQGKVIVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGTRP 783

Query: 1131 HPNECSGSDLDGDIYFVCWDPELIPPRQTEPMDYTPAPSMQLDHDVTIEEVEEYFANYIV 952
            HPNECSGSDLDGD+YFVCWDPELIP +Q +PMDY+PA + +LDH+VTIEE+EEYF NYIV
Sbjct: 784  HPNECSGSDLDGDVYFVCWDPELIPYKQIDPMDYSPASTTKLDHEVTIEEIEEYFTNYIV 843

Query: 951  NDSLGIIANAHTVFADREPTKAMSKPCLELAKLFSIAVDFPKTGVPAEIPPNLFAKEYPD 772
            NDSLGII+NAHT FADREP KAMS+PCLELAKLFSIAVDFPKTGVPAEIP  L  KEYPD
Sbjct: 844  NDSLGIISNAHTAFADREPDKAMSRPCLELAKLFSIAVDFPKTGVPAEIPQELRVKEYPD 903

Query: 771  FMEKPDKPTYVSPNVIGKLFREVKDIAPHTSSIRTFTHDVARRSYDPDMEVDGFENHIDD 592
            FMEKPDKP+Y S NVIGKLFREVK++AP+  SI+  T +  +R YDPDMEV+GFE++IDD
Sbjct: 904  FMEKPDKPSYQSHNVIGKLFREVKNLAPNECSIKFLTREKMQRFYDPDMEVEGFEDYIDD 963

Query: 591  AFYHKSNYDYKLGNLLDYYGIKSEAEILSGNIMKMSKSFNRRRDTEAIVMAVRSLRKEAR 412
            AF+HKS YDYKLGNL+DYYG+K+EAEIL G IMKMS+SF ++RD EAI MAVRSLRKEAR
Sbjct: 964  AFFHKSKYDYKLGNLMDYYGVKTEAEILGGGIMKMSRSFTKKRDAEAISMAVRSLRKEAR 1023

Query: 411  TWFNEKGSGLDSEDEDVYAKASAWYHVTYHHSYWGSYNEGMDRDHYISFPWCVYEKLIHI 232
            +WFNEKGS LD E +D YAKASAWY+VTYH SYWG YNEGM+RDH++SFPWCVY+KLI I
Sbjct: 1024 SWFNEKGSELDEEIDDAYAKASAWYYVTYHPSYWGQYNEGMNRDHFLSFPWCVYDKLIQI 1083

Query: 231  KKEKINIRKRSELLS 187
            KKEK  +R+  +L S
Sbjct: 1084 KKEKAAVREALDLSS 1098


>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  777 bits (2006), Expect = 0.0
 Identities = 370/495 (74%), Positives = 423/495 (85%)
 Frame = -1

Query: 1671 LGVRDFVFEKKQREVIAQLDAILKDPLRAQDALELMSPGENTNILNEMLMCGYKPDDEPF 1492
            LGV D+ FEKKQREV+ QL+A+L DPL AQ+ALELMSPGENTNIL EML+CGYKPD EPF
Sbjct: 620  LGVPDYAFEKKQREVVDQLNALLTDPLEAQEALELMSPGENTNILKEMLLCGYKPDAEPF 679

Query: 1491 LSMMLQIFRASKLLELRTKTRIFVPDGRSMMGCLDETRTLNYGQVFVQISGTGHRQLCDN 1312
            LSMML+ FRASKLLELRTK RIFV  GRSMMGCLDETRTLNYGQVFVQ SG         
Sbjct: 680  LSMMLETFRASKLLELRTKARIFVQKGRSMMGCLDETRTLNYGQVFVQFSG--------- 730

Query: 1311 SLLFCSSSLDQRNYIVEGDVVVAKNPCLHPGDVRVLRAVNVPSLHHMVDCIIFPQKGKRP 1132
                   S  +R +IV+G V+VAKNPCLHPGDVRVLRAVNVP LHHMVDC++FPQKG RP
Sbjct: 731  -------SRSERRFIVQGKVIVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGTRP 783

Query: 1131 HPNECSGSDLDGDIYFVCWDPELIPPRQTEPMDYTPAPSMQLDHDVTIEEVEEYFANYIV 952
            HPNECSGSDLDGD+YFVCWDPELIP +Q +PMDY+PA + +LDH+VTIEE+EEYF NYIV
Sbjct: 784  HPNECSGSDLDGDVYFVCWDPELIPYKQIDPMDYSPASTTKLDHEVTIEEIEEYFTNYIV 843

Query: 951  NDSLGIIANAHTVFADREPTKAMSKPCLELAKLFSIAVDFPKTGVPAEIPPNLFAKEYPD 772
            NDSLGII+NAHT FADREP KAMS+PCLELAKLFSIAVDFPKTGVPAEIP  L  KE+PD
Sbjct: 844  NDSLGIISNAHTAFADREPGKAMSRPCLELAKLFSIAVDFPKTGVPAEIPQELRVKEFPD 903

Query: 771  FMEKPDKPTYVSPNVIGKLFREVKDIAPHTSSIRTFTHDVARRSYDPDMEVDGFENHIDD 592
            FMEKPDKP+Y S NVIGKLFREVK++AP+  SI+  T +  +R YDPDMEV+GF ++IDD
Sbjct: 904  FMEKPDKPSYQSYNVIGKLFREVKNLAPNECSIKLLTREKMKRFYDPDMEVEGFVDYIDD 963

Query: 591  AFYHKSNYDYKLGNLLDYYGIKSEAEILSGNIMKMSKSFNRRRDTEAIVMAVRSLRKEAR 412
            AF++KS YDYKLGNL+DYYG+K+EAEILSG IMKMS+SF ++RD E+I MAVRSLRKEAR
Sbjct: 964  AFFYKSKYDYKLGNLMDYYGVKTEAEILSGGIMKMSRSFTKKRDAESISMAVRSLRKEAR 1023

Query: 411  TWFNEKGSGLDSEDEDVYAKASAWYHVTYHHSYWGSYNEGMDRDHYISFPWCVYEKLIHI 232
            +WFNEKGS LD E +D YAKASAWY+VTYHHSYWG YNEGM+RDH++SFPWCVY+KLI I
Sbjct: 1024 SWFNEKGSELDEEIDDAYAKASAWYYVTYHHSYWGQYNEGMNRDHFLSFPWCVYDKLIQI 1083

Query: 231  KKEKINIRKRSELLS 187
            KKEK  +R+  +L S
Sbjct: 1084 KKEKAALREALDLSS 1098


>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
            gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
            gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
            gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
            1 isoform 1 [Theobroma cacao] gi|508709488|gb|EOY01385.1|
            RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
            cacao] gi|508709489|gb|EOY01386.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
          Length = 1109

 Score =  773 bits (1995), Expect = 0.0
 Identities = 375/495 (75%), Positives = 423/495 (85%)
 Frame = -1

Query: 1671 LGVRDFVFEKKQREVIAQLDAILKDPLRAQDALELMSPGENTNILNEMLMCGYKPDDEPF 1492
            LGV D  FE+KQREV+ QL+AIL DPL+AQ+ALELMSPGENTNIL EML+CGY+PD EPF
Sbjct: 620  LGVPDHAFEEKQREVVDQLNAILTDPLKAQEALELMSPGENTNILKEMLLCGYEPDAEPF 679

Query: 1491 LSMMLQIFRASKLLELRTKTRIFVPDGRSMMGCLDETRTLNYGQVFVQISGTGHRQLCDN 1312
            LSMMLQ FRASKLLELRTK+RIFV +GRSMMGCLDETRTL+YGQVFVQ+SG         
Sbjct: 680  LSMMLQTFRASKLLELRTKSRIFVANGRSMMGCLDETRTLDYGQVFVQVSG--------- 730

Query: 1311 SLLFCSSSLDQRNYIVEGDVVVAKNPCLHPGDVRVLRAVNVPSLHHMVDCIIFPQKGKRP 1132
                   S  ++ +IV+G VVVAKNPCLHPGDVRVL AVNVP LHHMVDC++FPQKG RP
Sbjct: 731  -------SRSEQRFIVQGKVVVAKNPCLHPGDVRVLTAVNVPDLHHMVDCVVFPQKGSRP 783

Query: 1131 HPNECSGSDLDGDIYFVCWDPELIPPRQTEPMDYTPAPSMQLDHDVTIEEVEEYFANYIV 952
            HPNECSGSDLDGDIYFVCWDPELIP +Q  PMDY+PAP+  L+H+VTIEEVEEYF NYIV
Sbjct: 784  HPNECSGSDLDGDIYFVCWDPELIPSKQIPPMDYSPAPTKPLEHEVTIEEVEEYFTNYIV 843

Query: 951  NDSLGIIANAHTVFADREPTKAMSKPCLELAKLFSIAVDFPKTGVPAEIPPNLFAKEYPD 772
            NDSLGIIANAHTVFADREP KAMS  C  LAKLFSIAVDFPKTGVPAEIP  L  KEYPD
Sbjct: 844  NDSLGIIANAHTVFADREPRKAMSSECKWLAKLFSIAVDFPKTGVPAEIPQELRVKEYPD 903

Query: 771  FMEKPDKPTYVSPNVIGKLFREVKDIAPHTSSIRTFTHDVARRSYDPDMEVDGFENHIDD 592
            FMEKPDKPTY S NVIGKLFREVKD+AP+   IR+ T +   R YDPDMEVDG+E+++DD
Sbjct: 904  FMEKPDKPTYQSYNVIGKLFREVKDLAPNECFIRSLTRERLERFYDPDMEVDGYEDYVDD 963

Query: 591  AFYHKSNYDYKLGNLLDYYGIKSEAEILSGNIMKMSKSFNRRRDTEAIVMAVRSLRKEAR 412
            AFYHKSNYDYKLGNL++YYGIK+EAEILSG IMKMS+SF ++RD EAI +AVRSLRKEAR
Sbjct: 964  AFYHKSNYDYKLGNLMEYYGIKTEAEILSGGIMKMSRSFTKQRDAEAIGVAVRSLRKEAR 1023

Query: 411  TWFNEKGSGLDSEDEDVYAKASAWYHVTYHHSYWGSYNEGMDRDHYISFPWCVYEKLIHI 232
            +WFNEKG+GLDSE +D+YAKASAWYHVTYH SYWG YNEGM+R+H++SFPWCVY+KLI I
Sbjct: 1024 SWFNEKGNGLDSEADDLYAKASAWYHVTYHPSYWGLYNEGMNRNHFLSFPWCVYDKLILI 1083

Query: 231  KKEKINIRKRSELLS 187
            KK K+  R+ S L S
Sbjct: 1084 KK-KVTSRRNSRLSS 1097


>emb|CAN82568.1| hypothetical protein VITISV_040047 [Vitis vinifera]
          Length = 697

 Score =  772 bits (1993), Expect = 0.0
 Identities = 368/487 (75%), Positives = 422/487 (86%)
 Frame = -1

Query: 1671 LGVRDFVFEKKQREVIAQLDAILKDPLRAQDALELMSPGENTNILNEMLMCGYKPDDEPF 1492
            LGV+D VFEKKQRE + QLD ILKDPLRAQ+ALELMSPGENTNIL EMLMCGYKPD EPF
Sbjct: 158  LGVKDHVFEKKQREAVDQLDTILKDPLRAQEALELMSPGENTNILKEMLMCGYKPDAEPF 217

Query: 1491 LSMMLQIFRASKLLELRTKTRIFVPDGRSMMGCLDETRTLNYGQVFVQISGTGHRQLCDN 1312
            LSMMLQ FRA+KLLELRTKTRIFVP+GRSMMGCLDETRTL YG+VFVQISGTG RQ   +
Sbjct: 218  LSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGD 277

Query: 1311 SLLFCSSSLDQRNYIVEGDVVVAKNPCLHPGDVRVLRAVNVPSLHHMVDCIIFPQKGKRP 1132
            SL+F  S     N+I+EG VVVAKNPCLHPGDVR+L AV+VP+LHHMVDC++FPQKG RP
Sbjct: 278  SLMFYGSGSHHDNFILEGKVVVAKNPCLHPGDVRILSAVDVPALHHMVDCVVFPQKGMRP 337

Query: 1131 HPNECSGSDLDGDIYFVCWDPELIPPRQTEPMDYTPAPSMQLDHDVTIEEVEEYFANYIV 952
            HP+ECSGSDLDGDIYFVCWD +LIPPRQ  PMDYTPAP+  LDHDV IEEVEEYF NYI 
Sbjct: 338  HPDECSGSDLDGDIYFVCWDHDLIPPRQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIG 397

Query: 951  NDSLGIIANAHTVFADREPTKAMSKPCLELAKLFSIAVDFPKTGVPAEIPPNLFAKEYPD 772
            ND LGIIANAHTVFAD+E  KA+  PC ELAKLFSIA++FPKTGVPAEIP +L  KEYPD
Sbjct: 398  NDKLGIIANAHTVFADKEYDKALCPPCKELAKLFSIALEFPKTGVPAEIPFHLHVKEYPD 457

Query: 771  FMEKPDKPTYVSPNVIGKLFREVKDIAPHTSSIRTFTHDVARRSYDPDMEVDGFENHIDD 592
            FMEK +KPTY S +VIGKLFREVKD+APH   IR+FT DVA +SYD DMEVDGFE+++ D
Sbjct: 458  FMEKANKPTYESQSVIGKLFREVKDVAPHNYDIRSFTRDVAMQSYDADMEVDGFEDYVRD 517

Query: 591  AFYHKSNYDYKLGNLLDYYGIKSEAEILSGNIMKMSKSFNRRRDTEAIVMAVRSLRKEAR 412
            AFY+KS YD+KLG+L+D YGI++E+EILSG++MKMSKSF++R+D EAI +AVRSLRKEAR
Sbjct: 518  AFYYKSQYDFKLGSLMDCYGIRTESEILSGSLMKMSKSFDKRKDAEAIALAVRSLRKEAR 577

Query: 411  TWFNEKGSGLDSEDEDVYAKASAWYHVTYHHSYWGSYNEGMDRDHYISFPWCVYEKLIHI 232
            TWFN+ GSG  +  +DVYA ASAWYHVTYH  YWG YNEGM  DH++SFPWCVY+KLI I
Sbjct: 578  TWFNKMGSGTYAGADDVYAIASAWYHVTYHPYYWGCYNEGMYHDHFLSFPWCVYDKLIQI 637

Query: 231  KKEKINI 211
            K++K++I
Sbjct: 638  KRDKMSI 644


>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
          Length = 1109

 Score =  771 bits (1990), Expect = 0.0
 Identities = 368/488 (75%), Positives = 422/488 (86%)
 Frame = -1

Query: 1671 LGVRDFVFEKKQREVIAQLDAILKDPLRAQDALELMSPGENTNILNEMLMCGYKPDDEPF 1492
            LGV+D VFEKKQRE + QLD ILKDPLRAQ+ALELMSPGENTNIL EMLMCGYKPD EPF
Sbjct: 614  LGVKDHVFEKKQREAVDQLDTILKDPLRAQEALELMSPGENTNILKEMLMCGYKPDAEPF 673

Query: 1491 LSMMLQIFRASKLLELRTKTRIFVPDGRSMMGCLDETRTLNYGQVFVQISGTGHRQLCDN 1312
            LSMMLQ FRA+KLLELRTKTRIFVP+GRSMMGCLDETRTL YG+VFVQISGTG RQ   +
Sbjct: 674  LSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGD 733

Query: 1311 SLLFCSSSLDQRNYIVEGDVVVAKNPCLHPGDVRVLRAVNVPSLHHMVDCIIFPQKGKRP 1132
            SL+F  S     N+I+EG VVVAKNPCLHPGDVR+L AV+VP+LHHMVDC++FPQKG RP
Sbjct: 734  SLMFYGSGSHHDNFILEGKVVVAKNPCLHPGDVRILSAVDVPALHHMVDCVVFPQKGMRP 793

Query: 1131 HPNECSGSDLDGDIYFVCWDPELIPPRQTEPMDYTPAPSMQLDHDVTIEEVEEYFANYIV 952
            HP+ECSGSDLDGDIYFVCWD +LIPPRQ  PMDYTPAP+  LDHDV IEEVEEYF NYI 
Sbjct: 794  HPDECSGSDLDGDIYFVCWDHDLIPPRQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIG 853

Query: 951  NDSLGIIANAHTVFADREPTKAMSKPCLELAKLFSIAVDFPKTGVPAEIPPNLFAKEYPD 772
            ND LGIIANAHTVFAD+E  KA+  PC ELAKLFSIA++FPKTGVPAEIP +L  KEYPD
Sbjct: 854  NDKLGIIANAHTVFADKEYDKALCPPCKELAKLFSIALEFPKTGVPAEIPFHLHVKEYPD 913

Query: 771  FMEKPDKPTYVSPNVIGKLFREVKDIAPHTSSIRTFTHDVARRSYDPDMEVDGFENHIDD 592
            FMEK +KPTY S +VIGKLFREVKD+APH   +R+FT DVA +SYD DMEVDGFE+++ D
Sbjct: 914  FMEKANKPTYESQSVIGKLFREVKDVAPHNYDVRSFTRDVAMQSYDADMEVDGFEDYVRD 973

Query: 591  AFYHKSNYDYKLGNLLDYYGIKSEAEILSGNIMKMSKSFNRRRDTEAIVMAVRSLRKEAR 412
            AFY+KS YD+KLG+L+D  GI++E+EILSG+IMKMSKSF++R+D EAI +AVRSLRKEAR
Sbjct: 974  AFYYKSQYDFKLGSLMDCCGIRTESEILSGSIMKMSKSFDKRKDAEAIALAVRSLRKEAR 1033

Query: 411  TWFNEKGSGLDSEDEDVYAKASAWYHVTYHHSYWGSYNEGMDRDHYISFPWCVYEKLIHI 232
            TWFN+ GSG  +  +DVYA ASAWYHVTYH  YWG YNEGM  DH++SFPWCVY+KLI I
Sbjct: 1034 TWFNKMGSGTYAGADDVYAIASAWYHVTYHPYYWGCYNEGMYHDHFLSFPWCVYDKLIQI 1093

Query: 231  KKEKINIR 208
            K++K++IR
Sbjct: 1094 KRDKMSIR 1101


>ref|XP_007225261.1| hypothetical protein PRUPE_ppa001524mg [Prunus persica]
            gi|462422197|gb|EMJ26460.1| hypothetical protein
            PRUPE_ppa001524mg [Prunus persica]
          Length = 808

 Score =  766 bits (1977), Expect = 0.0
 Identities = 365/495 (73%), Positives = 424/495 (85%)
 Frame = -1

Query: 1671 LGVRDFVFEKKQREVIAQLDAILKDPLRAQDALELMSPGENTNILNEMLMCGYKPDDEPF 1492
            LG+++ VF +KQR  + QLDA+L DPL+AQ+AL++M  GE+TNIL E+LMCGYKPD EPF
Sbjct: 313  LGIQNHVFLEKQRAAVQQLDAMLTDPLKAQEALDMMYAGESTNILKELLMCGYKPDVEPF 372

Query: 1491 LSMMLQIFRASKLLELRTKTRIFVPDGRSMMGCLDETRTLNYGQVFVQISGTGHRQLCDN 1312
            +SMMLQ FRASKLLELRTKTRI +PDGR+MMGCLDETRTL YG+VFVQ SG  H      
Sbjct: 373  ISMMLQTFRASKLLELRTKTRILIPDGRAMMGCLDETRTLEYGEVFVQFSGKRH------ 426

Query: 1311 SLLFCSSSLDQRNYIVEGDVVVAKNPCLHPGDVRVLRAVNVPSLHHMVDCIIFPQKGKRP 1132
                   S   + +I+EG VVVAKNPCLHPGDVRVL+AV+VP L+HMVDC++FPQKG RP
Sbjct: 427  -----IGSESNQQFIIEGKVVVAKNPCLHPGDVRVLKAVDVPELYHMVDCVVFPQKGPRP 481

Query: 1131 HPNECSGSDLDGDIYFVCWDPELIPPRQTEPMDYTPAPSMQLDHDVTIEEVEEYFANYIV 952
            HPNECSGSDLDGDIYFVCWD ELIP RQ +PMDYTPAP++ LDH VTIEEVEEYF NY+V
Sbjct: 482  HPNECSGSDLDGDIYFVCWDDELIPSRQIQPMDYTPAPTIALDHAVTIEEVEEYFVNYMV 541

Query: 951  NDSLGIIANAHTVFADREPTKAMSKPCLELAKLFSIAVDFPKTGVPAEIPPNLFAKEYPD 772
            NDSLGIIANAHT FADR+P+KAMSKPC+ELAKLFSIAVDFPKTGVPA IP +L  KE+PD
Sbjct: 542  NDSLGIIANAHTAFADRQPSKAMSKPCIELAKLFSIAVDFPKTGVPAIIPQHLRVKEFPD 601

Query: 771  FMEKPDKPTYVSPNVIGKLFREVKDIAPHTSSIRTFTHDVARRSYDPDMEVDGFENHIDD 592
            FMEKPDKPTY S NVIG+LFREVKD+ PH  SIR+F+ +VAR+SYD DMEVDGFE++I+D
Sbjct: 602  FMEKPDKPTYQSCNVIGELFREVKDVEPHDGSIRSFSREVARQSYDRDMEVDGFEDYIED 661

Query: 591  AFYHKSNYDYKLGNLLDYYGIKSEAEILSGNIMKMSKSFNRRRDTEAIVMAVRSLRKEAR 412
            AFY+KSNYD  LGNLLDYYGIK+EAEILSG++MKMSKSF +RRD + I MAVRSLRKEAR
Sbjct: 662  AFYYKSNYDSILGNLLDYYGIKTEAEILSGSVMKMSKSFTKRRDIDPINMAVRSLRKEAR 721

Query: 411  TWFNEKGSGLDSEDEDVYAKASAWYHVTYHHSYWGSYNEGMDRDHYISFPWCVYEKLIHI 232
            TWFNEK +GLDS  +DVYAKASAWYHVTYH  Y+G YNEG++RDH+ISFPWCVY+KL+HI
Sbjct: 722  TWFNEKATGLDSGADDVYAKASAWYHVTYHPKYFGCYNEGLNRDHFISFPWCVYDKLVHI 781

Query: 231  KKEKINIRKRSELLS 187
            KKEK ++R+   L S
Sbjct: 782  KKEKASVRRARNLSS 796


>ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus]
            gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase
            1a [Cucumis sativus]
          Length = 1130

 Score =  764 bits (1973), Expect = 0.0
 Identities = 365/496 (73%), Positives = 424/496 (85%), Gaps = 1/496 (0%)
 Frame = -1

Query: 1671 LGVRDFVFEKKQREVIAQLDAILKDPLRAQDALELMSPGENTNILNEMLMCGYKPDDEPF 1492
            LGVRD +FEKKQ E + QLDAIL DPL+AQ+ALELMSPGENTNIL EML CGY+PD EP+
Sbjct: 625  LGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELMSPGENTNILKEMLKCGYQPDVEPY 684

Query: 1491 LSMMLQIFRASKLLELRTKTRIFVPDGRSMMGCLDETRTLNYGQVFVQISGTGHRQLCDN 1312
            LSMMLQ FRASKLLELRTK+RIF+P+GR+MMGCLDETRTL YGQVFVQIS   HR L ++
Sbjct: 685  LSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDETRTLEYGQVFVQISSGRHRNLSES 744

Query: 1311 SLLFCSSSLDQRNYIV-EGDVVVAKNPCLHPGDVRVLRAVNVPSLHHMVDCIIFPQKGKR 1135
               F  + + + +++V EG+V VAKNPCLHPGDVRVL+AVN+P L+HMVDC++FPQKG R
Sbjct: 745  ---FAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKAVNIPGLYHMVDCVVFPQKGSR 801

Query: 1134 PHPNECSGSDLDGDIYFVCWDPELIPPRQTEPMDYTPAPSMQLDHDVTIEEVEEYFANYI 955
            PHPNECSGSDLDGDIYFVCWD ELIP RQ  PMDYTPAP  +LD DVT E+++EYF NY+
Sbjct: 802  PHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMDYTPAPPNELDRDVTTEDIQEYFVNYM 861

Query: 954  VNDSLGIIANAHTVFADREPTKAMSKPCLELAKLFSIAVDFPKTGVPAEIPPNLFAKEYP 775
            VNDSLGIIANAHT FAD+E  KA S PCLELAKLFS+AVDFPKTGVPA IP +L+ KE+P
Sbjct: 862  VNDSLGIIANAHTAFADKELFKARSSPCLELAKLFSVAVDFPKTGVPAIIPSHLYVKEFP 921

Query: 774  DFMEKPDKPTYVSPNVIGKLFREVKDIAPHTSSIRTFTHDVARRSYDPDMEVDGFENHID 595
            DFMEKPD+P+Y S  VIGKLFR VKDIAP  S IR+FT DVARR YD DMEV+GFE++++
Sbjct: 922  DFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSHIRSFTRDVARRCYDCDMEVEGFEDYVE 981

Query: 594  DAFYHKSNYDYKLGNLLDYYGIKSEAEILSGNIMKMSKSFNRRRDTEAIVMAVRSLRKEA 415
            DAFYHKSNYDYKLGNLLDYYGIKSEAE+LSG+IM+MSKSF RRRD EAI +AVRSLRKEA
Sbjct: 982  DAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIMRMSKSFTRRRDAEAINLAVRSLRKEA 1041

Query: 414  RTWFNEKGSGLDSEDEDVYAKASAWYHVTYHHSYWGSYNEGMDRDHYISFPWCVYEKLIH 235
            RTWFN +  G DS  +D++AKASAWY+VTYHHSYWG YNEGM RDHY+SFPWCVY+KL+ 
Sbjct: 1042 RTWFNAR-EGADSNSDDLFAKASAWYYVTYHHSYWGCYNEGMKRDHYLSFPWCVYDKLMQ 1100

Query: 234  IKKEKINIRKRSELLS 187
            IK+  +  R+R+  L+
Sbjct: 1101 IKENNLRRRERAARLA 1116


>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
            gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
            [Nicotiana glutinosa]
          Length = 1117

 Score =  756 bits (1953), Expect = 0.0
 Identities = 362/484 (74%), Positives = 415/484 (85%)
 Frame = -1

Query: 1671 LGVRDFVFEKKQREVIAQLDAILKDPLRAQDALELMSPGENTNILNEMLMCGYKPDDEPF 1492
            LGV+D VFE+KQ E + QLDAIL D L+AQ+ALELMSPGENTNIL EML CGY PD EPF
Sbjct: 616  LGVKDDVFEQKQNEAVDQLDAILHDTLKAQEALELMSPGENTNILKEMLNCGYMPDAEPF 675

Query: 1491 LSMMLQIFRASKLLELRTKTRIFVPDGRSMMGCLDETRTLNYGQVFVQISGTGHRQLCDN 1312
            LSMMLQ FRASKLL+LRT++RIF+P+GR+MMGCLDE+RTL YGQVFVQ +GTG RQ  + 
Sbjct: 676  LSMMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTLEYGQVFVQFTGTGRRQFYEE 735

Query: 1311 SLLFCSSSLDQRNYIVEGDVVVAKNPCLHPGDVRVLRAVNVPSLHHMVDCIIFPQKGKRP 1132
            S  F  S     ++I+EG+VVVAKNPCLHPGD+RVLRAV+VP+LHHMVDC++FPQKGKRP
Sbjct: 736  SHPFNDSGSTNCDFILEGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRP 795

Query: 1131 HPNECSGSDLDGDIYFVCWDPELIPPRQTEPMDYTPAPSMQLDHDVTIEEVEEYFANYIV 952
            HPNECSGSDLDGDIYFVCWDP+L+PPRQ +PMDYTPAPS QLDHDVTIEEVEEYF NYIV
Sbjct: 796  HPNECSGSDLDGDIYFVCWDPDLVPPRQFQPMDYTPAPSTQLDHDVTIEEVEEYFTNYIV 855

Query: 951  NDSLGIIANAHTVFADREPTKAMSKPCLELAKLFSIAVDFPKTGVPAEIPPNLFAKEYPD 772
            NDSLGIIANAH VFADREP  AMS PC +LA+LFSIAVDFPKTGVPAEIP  L  KEYPD
Sbjct: 856  NDSLGIIANAHVVFADREPDMAMSDPCKQLAQLFSIAVDFPKTGVPAEIPSQLRPKEYPD 915

Query: 771  FMEKPDKPTYVSPNVIGKLFREVKDIAPHTSSIRTFTHDVARRSYDPDMEVDGFENHIDD 592
            FMEKPDKPTY S  VIGKLF++VKD  P  SSI  FT DVAR+SYD DM V+GFE++ID+
Sbjct: 916  FMEKPDKPTYHSEKVIGKLFQKVKDKTPQASSIANFTMDVARKSYDGDMIVNGFEDYIDE 975

Query: 591  AFYHKSNYDYKLGNLLDYYGIKSEAEILSGNIMKMSKSFNRRRDTEAIVMAVRSLRKEAR 412
            AFY+KS YD KLGNL+DYYGIK+EAEILSG IMK SK+F+RR+D +AI +AVRSLRKEAR
Sbjct: 976  AFYYKSEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKDADAIGVAVRSLRKEAR 1035

Query: 411  TWFNEKGSGLDSEDEDVYAKASAWYHVTYHHSYWGSYNEGMDRDHYISFPWCVYEKLIHI 232
            TWF  +     S+ +D+ AKASAWYHVTYHH+YWG YNEG+ RDH+ISFPWC+Y++LI I
Sbjct: 1036 TWFKRR-----SDIDDMLAKASAWYHVTYHHTYWGFYNEGLKRDHFISFPWCIYDQLIQI 1090

Query: 231  KKEK 220
            KK K
Sbjct: 1091 KKAK 1094


>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
          Length = 1116

 Score =  749 bits (1935), Expect = 0.0
 Identities = 363/495 (73%), Positives = 413/495 (83%)
 Frame = -1

Query: 1671 LGVRDFVFEKKQREVIAQLDAILKDPLRAQDALELMSPGENTNILNEMLMCGYKPDDEPF 1492
            LGV D V E+KQ E + QLDAIL D L+AQ+ALELMSPGENTNIL EML CGY PD EPF
Sbjct: 615  LGVIDDVLEQKQNEAVDQLDAILHDSLKAQEALELMSPGENTNILKEMLNCGYMPDAEPF 674

Query: 1491 LSMMLQIFRASKLLELRTKTRIFVPDGRSMMGCLDETRTLNYGQVFVQISGTGHRQLCDN 1312
            LSMMLQ FRASKLL+LRT+TRIF+P+GR+MMGCLDE+RTL YGQVFVQ SG G RQ  + 
Sbjct: 675  LSMMLQTFRASKLLDLRTRTRIFIPNGRTMMGCLDESRTLEYGQVFVQFSGAGRRQFFEE 734

Query: 1311 SLLFCSSSLDQRNYIVEGDVVVAKNPCLHPGDVRVLRAVNVPSLHHMVDCIIFPQKGKRP 1132
            S  F  S     ++I++G+VVVAKNPCLHPGD+RVLRAV+VP+LHHMVDC++FPQKGKRP
Sbjct: 735  SHPFNDSGSANCDFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRP 794

Query: 1131 HPNECSGSDLDGDIYFVCWDPELIPPRQTEPMDYTPAPSMQLDHDVTIEEVEEYFANYIV 952
            HPNECSGSDLDGDIYFVCWDP+LIPPRQ + MDYTPAP+ QLDHDVTIEEVEEYF NYI+
Sbjct: 795  HPNECSGSDLDGDIYFVCWDPDLIPPRQVQSMDYTPAPTTQLDHDVTIEEVEEYFTNYII 854

Query: 951  NDSLGIIANAHTVFADREPTKAMSKPCLELAKLFSIAVDFPKTGVPAEIPPNLFAKEYPD 772
            NDSLGIIANAH VFADREP  AMS PC +LA+LFSIAVDFPKTGVPAEIP  L  KEYPD
Sbjct: 855  NDSLGIIANAHVVFADREPDMAMSDPCKQLAQLFSIAVDFPKTGVPAEIPSQLRPKEYPD 914

Query: 771  FMEKPDKPTYVSPNVIGKLFREVKDIAPHTSSIRTFTHDVARRSYDPDMEVDGFENHIDD 592
            FMEKPDKPTY S  VIGKLF++VK+  P  SSI TFT DVAR+SYD DM VDGFE++ID+
Sbjct: 915  FMEKPDKPTYPSEKVIGKLFQKVKNKTPQASSIATFTRDVARKSYDSDMIVDGFEDYIDE 974

Query: 591  AFYHKSNYDYKLGNLLDYYGIKSEAEILSGNIMKMSKSFNRRRDTEAIVMAVRSLRKEAR 412
            AFY+KS YD KLGNL+DYYGIK+EAEILSG IMK SK+F+RR+D EAI +AVR LRKEAR
Sbjct: 975  AFYYKSEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKDAEAIGVAVRCLRKEAR 1034

Query: 411  TWFNEKGSGLDSEDEDVYAKASAWYHVTYHHSYWGSYNEGMDRDHYISFPWCVYEKLIHI 232
             WF  +     S+ +D+ AKASAWYHVTYHH+YWG YNEG+ RDH+ISFPWCVY++LI I
Sbjct: 1035 AWFKRR-----SDIDDMLAKASAWYHVTYHHTYWGLYNEGLKRDHFISFPWCVYDQLIQI 1089

Query: 231  KKEKINIRKRSELLS 187
            KK K   R    L S
Sbjct: 1090 KKAKARKRPVPHLSS 1104


>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine
            max] gi|571439308|ref|XP_006574822.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X2 [Glycine
            max] gi|571439310|ref|XP_006574823.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X3 [Glycine
            max]
          Length = 1125

 Score =  744 bits (1922), Expect = 0.0
 Identities = 364/492 (73%), Positives = 414/492 (84%), Gaps = 1/492 (0%)
 Frame = -1

Query: 1671 LGVRDFVFEKKQREVIAQLDAILKDPLRAQDALELMSPGENTNILNEMLMCGYKPDDEPF 1492
            LG++D VFEKKQRE + QL+ IL D L+AQ+ L+LMS GE TN+L EML+CGYKP++EPF
Sbjct: 627  LGIKDDVFEKKQRETVNQLNTILTDSLKAQEVLDLMSAGEITNVLKEMLICGYKPNEEPF 686

Query: 1491 LSMMLQIFRASKLLELRTKTRIFVPDGRSMMGCLDETRTLNYGQVFVQISGTGHRQLCDN 1312
            LSMMLQ FRASKLLELR K+RIF+P GR+MMGCLDETRTL YGQVFVQ S    + L D+
Sbjct: 687  LSMMLQTFRASKLLELRLKSRIFIPKGRAMMGCLDETRTLEYGQVFVQFSNNRLQNLSDD 746

Query: 1311 SLLFCSSSLDQRNYIVEGDVVVAKNPCLHPGDVRVLRAVNVPSLHHMVDCIIFPQKGKRP 1132
               F S  L  +NY+V+G VVVAKNPCLHPGDVRVL+AV+VP L+HMVDC++FPQKG RP
Sbjct: 747  ---FFSYDLP-KNYMVKGKVVVAKNPCLHPGDVRVLQAVDVPDLYHMVDCVVFPQKGPRP 802

Query: 1131 HPNECSGSDLDGDIYFVCWDPELIPPRQTEPMDYTPAPSMQLDHDVTIEEVEEYFANYIV 952
            HPNECSGSDLDGDIYFVCWD ELIP R  +PMDYT   +++LDHDV IEEVEEYFANYIV
Sbjct: 803  HPNECSGSDLDGDIYFVCWDHELIPSRPIDPMDYTAPATVELDHDVMIEEVEEYFANYIV 862

Query: 951  NDSLGIIANAHTVFADREPTKAMSKPCLELAKLFSIAVDFPKTGVPAEIPPNLFAKEYPD 772
            NDSLGIIANAHTVFAD+E  KAMS  C++LA+LFS AVDFPKTGVPA IPP L  KEYPD
Sbjct: 863  NDSLGIIANAHTVFADKEHLKAMSDQCVKLARLFSTAVDFPKTGVPAVIPPELHVKEYPD 922

Query: 771  FMEKPDKPTYVSPNVIGKLFREVKDIAPHTSSIRTFTHDVARRSYDPDMEVDGFENHIDD 592
            FMEKPDKPTY S NVIGKLFREVK+I+    SI +FT  VAR SYD +MEVDGF +++DD
Sbjct: 923  FMEKPDKPTYKSHNVIGKLFREVKEISTSAGSITSFTKLVARDSYDHEMEVDGFMDYVDD 982

Query: 591  AFYHKSNYDYKLGNLLDYYGIKSEAEILSGNIMKMSKSFNRRRDTEAIVMAVRSLRKEAR 412
            AFYHK+NYDYKLGNL+DYYGIK+EAEIL GNIMKMSKSFN+RRD EAI MAVRSLRKEAR
Sbjct: 983  AFYHKTNYDYKLGNLMDYYGIKTEAEILGGNIMKMSKSFNKRRDAEAINMAVRSLRKEAR 1042

Query: 411  TWFNEKGSG-LDSEDEDVYAKASAWYHVTYHHSYWGSYNEGMDRDHYISFPWCVYEKLIH 235
             WFNE  SG +DS   DVYAKASAWYHVTYH SYWG YNEGM+RDHY+SF WCVY  L+ 
Sbjct: 1043 AWFNENSSGDVDSGSSDVYAKASAWYHVTYHPSYWGCYNEGMNRDHYLSFSWCVYPLLVQ 1102

Query: 234  IKKEKINIRKRS 199
            IKKEK++IR+ S
Sbjct: 1103 IKKEKLSIRRSS 1114


>emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida]
          Length = 775

 Score =  743 bits (1917), Expect = 0.0
 Identities = 356/475 (74%), Positives = 404/475 (85%)
 Frame = -1

Query: 1671 LGVRDFVFEKKQREVIAQLDAILKDPLRAQDALELMSPGENTNILNEMLMCGYKPDDEPF 1492
            LGV+D VF++KQ E +AQLDAIL D L+AQ+AL+LMSPGENTNIL EML CGY PD EPF
Sbjct: 306  LGVKDEVFKRKQNEAVAQLDAILHDSLKAQEALDLMSPGENTNILKEMLNCGYLPDAEPF 365

Query: 1491 LSMMLQIFRASKLLELRTKTRIFVPDGRSMMGCLDETRTLNYGQVFVQISGTGHRQLCDN 1312
            LSMMLQ FRASKLL+LRT+TRIF+P GRSMMGCLDE+RTL YGQVFVQ +G G RQ  + 
Sbjct: 366  LSMMLQTFRASKLLDLRTRTRIFIPKGRSMMGCLDESRTLEYGQVFVQFTGAGGRQFYEE 425

Query: 1311 SLLFCSSSLDQRNYIVEGDVVVAKNPCLHPGDVRVLRAVNVPSLHHMVDCIIFPQKGKRP 1132
            S  F  S     N+I++G+VVVAKNPCLHPGD+RVL+AV+VP+LHHMVDC++FPQKGKRP
Sbjct: 426  SHHFNDSGSANYNFILKGNVVVAKNPCLHPGDIRVLKAVDVPALHHMVDCVVFPQKGKRP 485

Query: 1131 HPNECSGSDLDGDIYFVCWDPELIPPRQTEPMDYTPAPSMQLDHDVTIEEVEEYFANYIV 952
            HPNECSGSDLDGDIYFVCWDP+LIPPRQ +PMDYTPAPS+QLDHDVTIEEVEEYF NY+V
Sbjct: 486  HPNECSGSDLDGDIYFVCWDPDLIPPRQVQPMDYTPAPSIQLDHDVTIEEVEEYFTNYMV 545

Query: 951  NDSLGIIANAHTVFADREPTKAMSKPCLELAKLFSIAVDFPKTGVPAEIPPNLFAKEYPD 772
            ND LG+IANAH VFADREP  AMS PC+ELA+LFSIAVDFPKTGVPAEIP  L  KEYPD
Sbjct: 546  NDGLGVIANAHVVFADREPNMAMSDPCIELAQLFSIAVDFPKTGVPAEIPSQLRPKEYPD 605

Query: 771  FMEKPDKPTYVSPNVIGKLFREVKDIAPHTSSIRTFTHDVARRSYDPDMEVDGFENHIDD 592
            FMEKPDK TY S  VIGKLFREVKD     SSI TFT DVARRSYD D+EVDGFE++ID+
Sbjct: 606  FMEKPDKTTYHSEKVIGKLFREVKDKTTQASSITTFTRDVARRSYDTDLEVDGFEDYIDE 665

Query: 591  AFYHKSNYDYKLGNLLDYYGIKSEAEILSGNIMKMSKSFNRRRDTEAIVMAVRSLRKEAR 412
            AF +KS YD KLGNL+DYYGIK+EAE LSG IMK SK+F+RRRD EAI +AVRSLRKEAR
Sbjct: 666  AFDYKSEYDKKLGNLMDYYGIKTEAETLSGGIMKASKTFDRRRDAEAIGVAVRSLRKEAR 725

Query: 411  TWFNEKGSGLDSEDEDVYAKASAWYHVTYHHSYWGSYNEGMDRDHYISFPWCVYE 247
            TWF  +     S+ +D+ AKASAWYHV YH +YWG YNEG+ RDH+ISFPWCVY+
Sbjct: 726  TWFKRR-----SDIDDLLAKASAWYHVAYHPTYWGCYNEGLKRDHFISFPWCVYD 775


>gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus guttatus]
          Length = 1110

 Score =  739 bits (1908), Expect = 0.0
 Identities = 358/495 (72%), Positives = 418/495 (84%)
 Frame = -1

Query: 1671 LGVRDFVFEKKQREVIAQLDAILKDPLRAQDALELMSPGENTNILNEMLMCGYKPDDEPF 1492
            LGV+D VFEK+QRE +AQLD +L DP+RAQ+AL+LMSPGENT+IL EML CGY+PD EPF
Sbjct: 614  LGVKDHVFEKRQREAVAQLDDVLIDPMRAQEALDLMSPGENTHILKEMLKCGYEPDGEPF 673

Query: 1491 LSMMLQIFRASKLLELRTKTRIFVPDGRSMMGCLDETRTLNYGQVFVQISGTGHRQLCDN 1312
            LSMMLQ FRASKLL+LR K R+F+P  R MMGCLDET  L YGQVFV+ SG   R L D+
Sbjct: 674  LSMMLQTFRASKLLDLRVKARVFIPKARQMMGCLDETGILKYGQVFVRYSGAVKRGLFDD 733

Query: 1311 SLLFCSSSLDQRNYIVEGDVVVAKNPCLHPGDVRVLRAVNVPSLHHMVDCIIFPQKGKRP 1132
            S  + +S+ ++R   V G VVVAKNPCLHPGDVRVL AV+VP L HMVDC++FP+ GKRP
Sbjct: 734  S--YDNSTANERFDPVRGKVVVAKNPCLHPGDVRVLTAVDVPELRHMVDCVVFPKNGKRP 791

Query: 1131 HPNECSGSDLDGDIYFVCWDPELIPPRQTEPMDYTPAPSMQLDHDVTIEEVEEYFANYIV 952
            HPNECSGSDLDGDIYFVCWD +LIP +Q EPMDY PAP+ +LDHDVTIEEVE+YF NYIV
Sbjct: 792  HPNECSGSDLDGDIYFVCWDSDLIPTKQVEPMDYNPAPTTRLDHDVTIEEVEDYFTNYIV 851

Query: 951  NDSLGIIANAHTVFADREPTKAMSKPCLELAKLFSIAVDFPKTGVPAEIPPNLFAKEYPD 772
            NDSLGIIANAHTVFAD+EP  A+S+PCLELA+LFSIAVDF KTG+PAEIPP+L  KEYPD
Sbjct: 852  NDSLGIIANAHTVFADKEPLMALSEPCLELARLFSIAVDFNKTGIPAEIPPHLRVKEYPD 911

Query: 771  FMEKPDKPTYVSPNVIGKLFREVKDIAPHTSSIRTFTHDVARRSYDPDMEVDGFENHIDD 592
            FMEKPDK  Y S  VIGKLFREVKDIAP TSS R+FT +VARRSYDPDMEVDGFE+HID+
Sbjct: 912  FMEKPDKINYASSRVIGKLFREVKDIAPQTSSFRSFTKEVARRSYDPDMEVDGFEDHIDE 971

Query: 591  AFYHKSNYDYKLGNLLDYYGIKSEAEILSGNIMKMSKSFNRRRDTEAIVMAVRSLRKEAR 412
            AF HK+ YDYKLGNL++YYG+K+EAE+LSG IMKMSK+F+RR+D EAI  AVRSLR EAR
Sbjct: 972  AFLHKTEYDYKLGNLMEYYGVKTEAEVLSGGIMKMSKTFDRRKDAEAIGAAVRSLRNEAR 1031

Query: 411  TWFNEKGSGLDSEDEDVYAKASAWYHVTYHHSYWGSYNEGMDRDHYISFPWCVYEKLIHI 232
            +WF +KG    +E +DVYAKASAWY+VTYH  Y+G YNEGM RDHY+SFPWCVY+KL+ I
Sbjct: 1032 SWF-KKG----TEADDVYAKASAWYYVTYHPDYFGCYNEGMKRDHYLSFPWCVYDKLVKI 1086

Query: 231  KKEKINIRKRSELLS 187
            KK+  N R+ S++ S
Sbjct: 1087 KKD--NSRRASQMAS 1099


>ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Capsella rubella]
            gi|482575337|gb|EOA39524.1| hypothetical protein
            CARUB_v10008144mg [Capsella rubella]
          Length = 1107

 Score =  738 bits (1906), Expect = 0.0
 Identities = 356/497 (71%), Positives = 411/497 (82%)
 Frame = -1

Query: 1671 LGVRDFVFEKKQREVIAQLDAILKDPLRAQDALELMSPGENTNILNEMLMCGYKPDDEPF 1492
            LGV+D VFEKKQREV+ +LDAIL DPL A +AL LM+PGENTNIL ++L+CGYKPD EPF
Sbjct: 624  LGVKDNVFEKKQREVVDRLDAILTDPLEAHEALGLMAPGENTNILKQLLLCGYKPDAEPF 683

Query: 1491 LSMMLQIFRASKLLELRTKTRIFVPDGRSMMGCLDETRTLNYGQVFVQISGTGHRQLCDN 1312
            LSMMLQ FRASKLLELRTKTRIF+P GRSMMGCLDETRTL YGQV VQ S          
Sbjct: 684  LSMMLQNFRASKLLELRTKTRIFIPGGRSMMGCLDETRTLEYGQVVVQYS---------- 733

Query: 1311 SLLFCSSSLDQRNYIVEGDVVVAKNPCLHPGDVRVLRAVNVPSLHHMVDCIIFPQKGKRP 1132
                 + ++  + YI+ G VVVAKNPCLHPGDVRVL+AVNVP+L+HMVDC++FPQKG RP
Sbjct: 734  -----NPTMPGKRYIITGPVVVAKNPCLHPGDVRVLQAVNVPALYHMVDCVVFPQKGSRP 788

Query: 1131 HPNECSGSDLDGDIYFVCWDPELIPPRQTEPMDYTPAPSMQLDHDVTIEEVEEYFANYIV 952
            HPNECSGSDLDGDIYF+CWD ELIPPR +EPMDYTP P+  LDHDVTIEEVEEYFANYIV
Sbjct: 789  HPNECSGSDLDGDIYFICWDHELIPPRTSEPMDYTPEPAQILDHDVTIEEVEEYFANYIV 848

Query: 951  NDSLGIIANAHTVFADREPTKAMSKPCLELAKLFSIAVDFPKTGVPAEIPPNLFAKEYPD 772
            NDSLGIIANAHT FAD+EP KA S PC+ELA+ FSIAVDFPKTG+ AEIP +L+ KEYPD
Sbjct: 849  NDSLGIIANAHTAFADKEPLKAFSDPCIELARKFSIAVDFPKTGIAAEIPQHLYVKEYPD 908

Query: 771  FMEKPDKPTYVSPNVIGKLFREVKDIAPHTSSIRTFTHDVARRSYDPDMEVDGFENHIDD 592
            FM+KPDKPTY S NVIGKLFREVK+ AP   SIR+FT DVA +SYD DMEV+GFE +ID+
Sbjct: 909  FMDKPDKPTYESKNVIGKLFREVKERAPPLISIRSFTLDVALKSYDKDMEVEGFEEYIDE 968

Query: 591  AFYHKSNYDYKLGNLLDYYGIKSEAEILSGNIMKMSKSFNRRRDTEAIVMAVRSLRKEAR 412
            AF+HK NYDY+LGNL+DYYGIK+EAEILSG IM+MSKSF +RRD E+I  AVR+LRKEA 
Sbjct: 969  AFFHKGNYDYRLGNLMDYYGIKTEAEILSGGIMRMSKSFTKRRDAESIGRAVRALRKEAL 1028

Query: 411  TWFNEKGSGLDSEDEDVYAKASAWYHVTYHHSYWGSYNEGMDRDHYISFPWCVYEKLIHI 232
            +WFN   +  D  D D  AKASAWYHVTYH SYWG YNEG++RDH++SF WCVY+KL+ I
Sbjct: 1029 SWFN---NAEDKNDFDESAKASAWYHVTYHSSYWGVYNEGLNRDHFLSFAWCVYDKLVRI 1085

Query: 231  KKEKINIRKRSELLSRV 181
            KK  +  R+R E L ++
Sbjct: 1086 KKANVGRRQRQEALEQL 1102


>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
            gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
            [Solanum lycopersicum]
          Length = 1114

 Score =  738 bits (1905), Expect = 0.0
 Identities = 352/488 (72%), Positives = 413/488 (84%)
 Frame = -1

Query: 1671 LGVRDFVFEKKQREVIAQLDAILKDPLRAQDALELMSPGENTNILNEMLMCGYKPDDEPF 1492
            LGV+D V E+KQ+E + QLDAIL D L+AQ+ALELMSPGENTNIL  ML CGYKPD EPF
Sbjct: 613  LGVKDEVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYKPDAEPF 672

Query: 1491 LSMMLQIFRASKLLELRTKTRIFVPDGRSMMGCLDETRTLNYGQVFVQISGTGHRQLCDN 1312
            LSMMLQ FRASKLL+LRT++RIF+P+GR+MMGCLDE+RTL YGQVFVQ +G GH +  D+
Sbjct: 673  LSMMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTLEYGQVFVQFTGAGHGEFSDD 732

Query: 1311 SLLFCSSSLDQRNYIVEGDVVVAKNPCLHPGDVRVLRAVNVPSLHHMVDCIIFPQKGKRP 1132
               F +S     N+I++G+VVVAKNPCLHPGD+RVL+AVNV +LHHMVDC++FPQKGKRP
Sbjct: 733  LHPFNNSRSTNSNFILKGNVVVAKNPCLHPGDIRVLKAVNVRALHHMVDCVVFPQKGKRP 792

Query: 1131 HPNECSGSDLDGDIYFVCWDPELIPPRQTEPMDYTPAPSMQLDHDVTIEEVEEYFANYIV 952
            HPNECSGSDLDGDIYFVCWD ++IPPRQ +PM+Y PAPS+QLDHDVTIEEVEEYF NYIV
Sbjct: 793  HPNECSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQLDHDVTIEEVEEYFTNYIV 852

Query: 951  NDSLGIIANAHTVFADREPTKAMSKPCLELAKLFSIAVDFPKTGVPAEIPPNLFAKEYPD 772
            NDSLGIIANAH VFADREP  AMS PC +LA+LFSIAVDFPKTGVPAEIP  L  KEYPD
Sbjct: 853  NDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPD 912

Query: 771  FMEKPDKPTYVSPNVIGKLFREVKDIAPHTSSIRTFTHDVARRSYDPDMEVDGFENHIDD 592
            FM+KPDK +Y+S  VIGKLFR+VKD AP  SSI TFT DVARRSYD DMEVDGFE++ID+
Sbjct: 913  FMDKPDKTSYISERVIGKLFRKVKDKAPQASSIATFTRDVARRSYDADMEVDGFEDYIDE 972

Query: 591  AFYHKSNYDYKLGNLLDYYGIKSEAEILSGNIMKMSKSFNRRRDTEAIVMAVRSLRKEAR 412
            AF +K+ YD KLGNL+DYYGIK+EAEILSG IMK SK+F+RR+D EAI +AVR+LRKEAR
Sbjct: 973  AFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKDAEAISVAVRALRKEAR 1032

Query: 411  TWFNEKGSGLDSEDEDVYAKASAWYHVTYHHSYWGSYNEGMDRDHYISFPWCVYEKLIHI 232
             WF  +     ++ +D+  KASAWYHVTYH +YWG YN+G+ R H+ISFPWCVY++LI I
Sbjct: 1033 AWFKRR-----NDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRAHFISFPWCVYDQLIQI 1087

Query: 231  KKEKINIR 208
            KK+K   R
Sbjct: 1088 KKDKARNR 1095