BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia25_contig00000472
         (3634 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_227368.1| 109 kDa polyprotein [Strawberry latent ringspot...  1384   0.0  
emb|CAA54615.1| 98.8kD polyprotein [Strawberry latent ringspot v...  1077   0.0  
gb|ADN88403.1| polyprotein, partial [Strawberry latent ringspot ...   924   0.0  
gb|ADN88405.1| polyprotein, partial [Strawberry latent ringspot ...   922   0.0  
gb|ADN88406.1| polyprotein, partial [Strawberry latent ringspot ...   921   0.0  
gb|ADN88404.1| polyprotein, partial [Strawberry latent ringspot ...   918   0.0  
gb|ADN88402.1| polyprotein, partial [Strawberry latent ringspot ...   915   0.0  
ref|YP_227374.1| putative 40 kDa movement protein [Strawberry la...   607   e-170
ref|YP_227375.1| large coat protein [Strawberry latent ringspot ...   518   e-143
ref|YP_227376.1| small coat protein [Strawberry latent ringspot ...   273   3e-70
gb|ABC58719.1| coat protein [Strawberry latent ringspot virus] g...   261   2e-66
gb|AAR99477.1| coat protein [Strawberry latent ringspot virus] g...   258   2e-65
gb|ABC58721.2| coat protein [Strawberry latent ringspot virus]        256   4e-65
gb|AHB30925.1| coat protein, partial [Strawberry latent ringspot...   240   3e-60
gb|AHB30924.1| coat protein, partial [Strawberry latent ringspot...   240   4e-60
gb|AHB30923.1| coat protein, partial [Strawberry latent ringspot...   238   2e-59
gb|AEF97400.1| coat protein [Strawberry latent ringspot virus]        223   5e-55
gb|AEF97401.1| coat protein [Strawberry latent ringspot virus]        221   1e-54
gb|AAY56484.1| unknown [Strawberry latent ringspot virus]              61   3e-06

>ref|YP_227368.1| 109 kDa polyprotein [Strawberry latent ringspot virus]
            gi|58040999|gb|AAW63129.1| 109 kDa polyprotein
            [Strawberry latent ringspot virus]
          Length = 989

 Score = 1384 bits (3581), Expect = 0.0
 Identities = 677/994 (68%), Positives = 787/994 (79%)
 Frame = +3

Query: 318  MTSFFGRRSTQEMPNVPSYSAKEMEVLKAAITECGINYADVVRAAQTESGKMAILTAANT 497
            M SFF RRST EMP+VPSYS +EMEVLK+AITECGINYADVVRAAQTESGK+AILTAANT
Sbjct: 1    MASFFSRRSTPEMPSVPSYSPREMEVLKSAITECGINYADVVRAAQTESGKLAILTAANT 60

Query: 498  SQLKSLIATTSTSNALARLKEKPKAIVHVSEGVGRQVLCDDKLTHQTTVVHTPEPLFXXX 677
            + LKSL+ATT+T +A  RL E PKAIVHV+EGVG+QVLCDDKLTHQTTVVHTP+ ++   
Sbjct: 61   NSLKSLVATTTTQSAFRRLSESPKAIVHVAEGVGKQVLCDDKLTHQTTVVHTPKKVYDHM 120

Query: 678  XXXXXXXXXDTGGEEPKYRSADVCTIQLGVTSHLSGHSNQIAGVVLLDGNRSTQEQAVLG 857
                     DT  EEPKYRSAD+CTIQLGVTSHLSGHSNQIAG+VLLDGNR+TQEQAVLG
Sbjct: 121  RSKRLKKTKDTDEEEPKYRSADICTIQLGVTSHLSGHSNQIAGIVLLDGNRATQEQAVLG 180

Query: 858  IGVLPLYEAHSHALFAPRLNIHYDDPNFVNRLQLLTTFSDDVLGGGSPAMSYSTISVVRH 1037
            IGVLPLYEAHSHALFAPRLNIHYDDPNFV+RLQLLTTFSDDVLGGGSPAMSYSTISVVRH
Sbjct: 181  IGVLPLYEAHSHALFAPRLNIHYDDPNFVDRLQLLTTFSDDVLGGGSPAMSYSTISVVRH 240

Query: 1038 NITDAHYLPEPLPYSKLKEKYPCGVRGLSNFQAAEIAPLQPARLTRSASYMPIQRAGTKT 1217
            NI DAH+LPEPLPYSKLKEKYP G++GLSNFQAAEIAPLQPARLTRSASYMPI+R+G KT
Sbjct: 241  NIADAHFLPEPLPYSKLKEKYPSGLKGLSNFQAAEIAPLQPARLTRSASYMPIRRSGAKT 300

Query: 1218 VLTFEDNIAQVKEQQPVQARASFSFANISYGQQDRAALPSPPPQKCQFHNKVSCPCAQHT 1397
            VLTFEDN A ++EQQP+QARASFSF+ ISYGQQDRAALP  P  KC FHN+V CPC QHT
Sbjct: 301  VLTFEDNQASLREQQPLQARASFSFSGISYGQQDRAALPFAPSPKCSFHNRVGCPCKQHT 360

Query: 1398 GNMEASGNHHEELVPASEGGTEGQFFSPQPVVHPQDSRFVGSHPFSFPINSNVGTVVYTL 1577
            G  EASG  HEELVPA+ GGTE  FFSP+ +  P  ++FVGSHPFSFPINSNVGT VYTL
Sbjct: 361  GEAEASG-LHEELVPAASGGTEAIFFSPRSIPLPGSAKFVGSHPFSFPINSNVGTTVYTL 419

Query: 1578 PIMRTSLRDTEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETLSKYPSRER 1757
            P++RTSL+DTEWGR+YK Y ++R KPTVRL+ S PIQAKGLLWLCYDP ETL+KYPSRER
Sbjct: 420  PLIRTSLKDTEWGRYYKSYTFMRFKPTVRLVSSAPIQAKGLLWLCYDPCETLAKYPSRER 479

Query: 1758 ALALQGTWFMPGRHDSASLTVQELATPAGFCDMDTDVNGAFKVVIIKDLANFDVSDYGME 1937
            AL LQGTWFMPGRHDS +LT+ ELATP+G+  M +D NGAFKVVIIKDL NF+V+D GME
Sbjct: 480  ALMLQGTWFMPGRHDSVTLTIDELATPSGYSIMTSDHNGAFKVVIIKDLENFEVADLGME 539

Query: 1938 LSMYLEVEKIGLGSVVTNEVLTTFYPLRQVVLDYELSTTTSKGKAXXXXXXXXXXAHDEA 2117
            LS++L+V+ IG+G      +  +F PLRQVV+D++LSTTT KGKA            D A
Sbjct: 540  LSLFLDVQDIGMGMGPEMPLTDSFLPLRQVVVDFDLSTTTPKGKALVVPLNPLLPGFDGA 599

Query: 2118 QFYPSCSSSILENHRYWKGVLSLEVVFNLPAMAGGIVELAFAYDTYDNVDGDTYRRFGSS 2297
            Q+YPSCSSSILENHRYWKG L LEV+FNLPAM GG VE+ FA D+    + D YR FGS+
Sbjct: 600  QWYPSCSSSILENHRYWKGTLVLEVIFNLPAMGGGTVEMGFANDSCSGRESDAYRYFGST 659

Query: 2298 VVDLRAHRILRARVPXXXXXXXXXXXXXXXFEVKPQTGFGDILKLVVLFTAPLHISDTSK 2477
            VVDLRAHR+LRARVP               F V P T +G  L+ V+LFTAPLHISDT+K
Sbjct: 660  VVDLRAHRLLRARVPLHGYGGYLMGGSGSLFAVPPLTDYGQSLRFVLLFTAPLHISDTTK 719

Query: 2478 KGSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVPNVAASGGPIVKVGTVEWEEPFISKVP 2657
            KGSV+VRYLGLED +Y++P TS+GRLNP TTLV    ASG P+V+VGT +W EP + ++P
Sbjct: 720  KGSVMVRYLGLEDCEYIQPTTSLGRLNPATTLV----ASGAPVVQVGTSDWVEPPLFRLP 775

Query: 2658 LGLRQKTFRLMTINKWAPSGFLYFPVTPSVHLPRTAGNFVADLEQQCPLMHRSQENCQWR 2837
            LGL Q+ FRL+TI+KW  SGFL+FP TPS H+P+  G F  ++EQ  PLMHRSQEN QW 
Sbjct: 776  LGLLQRRFRLLTISKWPKSGFLFFPTTPSSHIPKLVGTFEGEVEQHSPLMHRSQENAQWS 835

Query: 2838 GTLKYHLTARLEGATDQLILPHRSLTFSAVLLSRILPAPCFIDNSTFKPLLPLLSVKDTF 3017
            G+L Y+L+ R  GAT Q +LP R +   A +L  I+  PCFI+  TF  ++P+   ++T 
Sbjct: 836  GSLTYYLSIRYSGATPQGVLPLRPVCLGATILDNIMGKPCFIEKDTFVQVMPMADPRETI 895

Query: 3018 SLEQDHPFVEFTTPPGRWTNTHFGATEQYTWRTCPVWVLLQFPPKTMVQLHVRDVSLWVE 3197
             L        + TPP RW NTHFGATE Y  RTCP WVLLQFP +    L VRD+SLWVE
Sbjct: 896  YLPTTDSVASYVTPPRRWVNTHFGATEMYGVRTCPAWVLLQFPNEEASHLGVRDISLWVE 955

Query: 3198 PDIEYRHPMGGFPLTIPDPSPAPKYFFENTFIVG 3299
            P + +RH +GGFP+  P P+PA  Y++ENTF VG
Sbjct: 956  PKVTFRHAVGGFPILKPTPAPAIDYYYENTFPVG 989


>emb|CAA54615.1| 98.8kD polyprotein [Strawberry latent ringspot virus]
          Length = 890

 Score = 1077 bits (2784), Expect = 0.0
 Identities = 542/832 (65%), Positives = 631/832 (75%)
 Frame = +3

Query: 705  DTGGEEPKYRSADVCTIQLGVTSHLSGHSNQIAGVVLLDGNRSTQEQAVLGIGVLPLYEA 884
            DT  EEPKY    V +    V S  S  SNQIAGVVLLDGNR+TQE AVLGIGVLPLYEA
Sbjct: 11   DTDEEEPKYALMFVLSTWSHVPSFWS--SNQIAGVVLLDGNRATQETAVLGIGVLPLYEA 68

Query: 885  HSHALFAPRLNIHYDDPNFVNRLQLLTTFSDDVLGGGSPAMSYSTISVVRHNITDAHYLP 1064
            HSHALFAPRL I      F +RLQLLTTFSD VLGGGSPAMSYSTISVVRHN+ DAH+LP
Sbjct: 69   HSHALFAPRL-ISTMMIEFCDRLQLLTTFSDVVLGGGSPAMSYSTISVVRHNVRDAHFLP 127

Query: 1065 EPLPYSKLKEKYPCGVRGLSNFQAAEIAPLQPARLTRSASYMPIQRAGTKTVLTFEDNIA 1244
            EPLPYSK KEK   GV+GLSNFQAAEIAPLQPARLTRSASYMPIQR+G KTVLTFEDN A
Sbjct: 128  EPLPYSKSKEK-TSGVKGLSNFQAAEIAPLQPARLTRSASYMPIQRSGEKTVLTFEDNQA 186

Query: 1245 QVKEQQPVQARASFSFANISYGQQDRAALPSPPPQKCQFHNKVSCPCAQHTGNMEASGNH 1424
             ++EQQP +ARASFSF+ +SYGQQDRAALPS P  KC FHN+V CPC QHTG  EASG H
Sbjct: 187  SLREQQPFEARASFSFSGVSYGQQDRAALPSAPSPKCAFHNRVGCPCKQHTGEAEASGLH 246

Query: 1425 HEELVPASEGGTEGQFFSPQPVVHPQDSRFVGSHPFSFPINSNVGTVVYTLPIMRTSLRD 1604
             EELVPAS GGTE  FFSP+ +  P  ++FVGSHPFSFPINSNVGT VYTLP++RTSL+D
Sbjct: 247  -EELVPASSGGTEAIFFSPKSIPLPGSAKFVGSHPFSFPINSNVGTTVYTLPLIRTSLKD 305

Query: 1605 TEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETLSKYPSRERALALQGTWF 1784
            TEWGR+Y+ Y ++R KPTVRL+ S PIQAKGLLWLCYDP ETL+KYPSRERAL LQGTWF
Sbjct: 306  TEWGRYYRSYTFMRFKPTVRLVSSAPIQAKGLLWLCYDPCETLAKYPSRERALMLQGTWF 365

Query: 1785 MPGRHDSASLTVQELATPAGFCDMDTDVNGAFKVVIIKDLANFDVSDYGMELSMYLEVEK 1964
            MPGRHDS +LT+ ELATP+G+  M +D NGAFKVVIIKDL NF+V+D GMELS++L+V+ 
Sbjct: 366  MPGRHDSVTLTIDELATPSGYSIMTSDHNGAFKVVIIKDLENFEVADLGMELSLFLDVQD 425

Query: 1965 IGLGSVVTNEVLTTFYPLRQVVLDYELSTTTSKGKAXXXXXXXXXXAHDEAQFYPSCSSS 2144
            IG+G      +  +F PLRQVV+D++LSTTT KGKA            D AQ+YPSCSSS
Sbjct: 426  IGMGMGPEMPLTDSFLPLRQVVVDFDLSTTTPKGKALVVPLNPLLPGFDGAQWYPSCSSS 485

Query: 2145 ILENHRYWKGVLSLEVVFNLPAMAGGIVELAFAYDTYDNVDGDTYRRFGSSVVDLRAHRI 2324
            ILENHRYWKG L LEV+FNLPAM GG VE+ FA D+Y   + D YR FGS+VVDLRAHR+
Sbjct: 486  ILENHRYWKGTLVLEVIFNLPAMGGGTVEMGFANDSYSGWESDAYRYFGSTVVDLRAHRL 545

Query: 2325 LRARVPXXXXXXXXXXXXXXXFEVKPQTGFGDILKLVVLFTAPLHISDTSKKGSVLVRYL 2504
            LRA+VP               F V P T +G  L+ V+LFTAPLHISDT+K GSV+VRYL
Sbjct: 546  LRAKVPLHGYGGYLMGGSGSLFAVPPLTDYGQSLRFVLLFTAPLHISDTTKTGSVMVRYL 605

Query: 2505 GLEDLDYLEPATSIGRLNPKTTLVPNVAASGGPIVKVGTVEWEEPFISKVPLGLRQKTFR 2684
            GLED +Y++P TS+GRLNP TTLV    ASG P+V+VGT +W EP + ++PLGL QK FR
Sbjct: 606  GLEDCEYIQPTTSLGRLNPATTLV----ASGAPVVQVGTSDWVEPLLFRLPLGLLQKRFR 661

Query: 2685 LMTINKWAPSGFLYFPVTPSVHLPRTAGNFVADLEQQCPLMHRSQENCQWRGTLKYHLTA 2864
            L+TI+KW  SGFL+FP TPS H+P+ AG F  ++EQ  PLMHRSQEN QW G+L Y+L+ 
Sbjct: 662  LLTISKWPKSGFLFFPTTPSSHIPKLAGTFEGEVEQHSPLMHRSQENAQWSGSLTYYLSI 721

Query: 2865 RLEGATDQLILPHRSLTFSAVLLSRILPAPCFIDNSTFKPLLPLLSVKDTFSLEQDHPFV 3044
            R  GAT Q +LP R +   A +L  I+  PCFI+  TF  ++P+   ++T  L       
Sbjct: 722  RYSGATPQGVLPLRPVCLGATILDNIMGKPCFIEKDTFVQVMPMADPRETIYLPTTDSIA 781

Query: 3045 EFTTPPGRWTNTHFGATEQYTWRTCPVWVLLQFPPKTMVQLHVRDVSLWVEP 3200
             + TPP RW NTHFGATE Y  RTCP WVLLQFP +    L VRD+SLWVEP
Sbjct: 782  SYETPPRRWVNTHFGATETYGVRTCPAWVLLQFPNEEASHLGVRDISLWVEP 833


>gb|ADN88403.1| polyprotein, partial [Strawberry latent ringspot virus]
          Length = 712

 Score =  924 bits (2387), Expect = 0.0
 Identities = 448/717 (62%), Positives = 538/717 (75%)
 Frame = +3

Query: 1149 PLQPARLTRSASYMPIQRAGTKTVLTFEDNIAQVKEQQPVQARASFSFANISYGQQDRAA 1328
            PLQPARLTRSASYMPIQR+G KTVLTFEDN A +KEQQP+QARASFSF+ +SYGQ DRAA
Sbjct: 1    PLQPARLTRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQHDRAA 60

Query: 1329 LPSPPPQKCQFHNKVSCPCAQHTGNMEASGNHHEELVPASEGGTEGQFFSPQPVVHPQDS 1508
            LPS PPQKC FHN+V CPC QHTG  E SG H EELVPAS GGTE  FFSP+ +  P  +
Sbjct: 61   LPSAPPQKCSFHNRVGCPCTQHTGEAEPSGLH-EELVPASSGGTEAIFFSPKSIPVPGSA 119

Query: 1509 RFVGSHPFSFPINSNVGTVVYTLPIMRTSLRDTEWGRFYKGYRYLRCKPTVRLIGSGPIQ 1688
            +FVGSHPFSFPINSNVGT VY+LP++ TSL+DTEWGR+Y+ Y ++R KPTVRL+ S PIQ
Sbjct: 120  KFVGSHPFSFPINSNVGTTVYSLPLISTSLKDTEWGRYYRSYTFMRFKPTVRLVSSAPIQ 179

Query: 1689 AKGLLWLCYDPSETLSKYPSRERALALQGTWFMPGRHDSASLTVQELATPAGFCDMDTDV 1868
            AKGLLWLCYDP ETL+KYPSRERAL LQG WFMPGRHDS +LT+ ELATP+G+  M++D 
Sbjct: 180  AKGLLWLCYDPCETLAKYPSRERALMLQGVWFMPGRHDSVTLTIDELATPSGYSIMNSDH 239

Query: 1869 NGAFKVVIIKDLANFDVSDYGMELSMYLEVEKIGLGSVVTNEVLTTFYPLRQVVLDYELS 2048
            NGAFKVVIIKDL NF+V+D GMELS++L+V+ IG+G      +  +F PLRQVV+D++LS
Sbjct: 240  NGAFKVVIIKDLENFEVADLGMELSLFLDVQDIGMGIGPELPLTDSFLPLRQVVVDFDLS 299

Query: 2049 TTTSKGKAXXXXXXXXXXAHDEAQFYPSCSSSILENHRYWKGVLSLEVVFNLPAMAGGIV 2228
            TTT KGKA            D AQ+YPSCSSSILENHRYWKG L LEV+FNLPAM GG V
Sbjct: 300  TTTPKGKALVVPLNPLLPGFDGAQWYPSCSSSILENHRYWKGTLVLEVIFNLPAMGGGTV 359

Query: 2229 ELAFAYDTYDNVDGDTYRRFGSSVVDLRAHRILRARVPXXXXXXXXXXXXXXXFEVKPQT 2408
            E+ FA ++Y   + D YR FGS+VVDLRAHR+LRA+VP               F V P T
Sbjct: 360  EMGFANNSYSGWESDAYRYFGSTVVDLRAHRLLRAKVPLYGYGGYLMGGSGSLFAVPPLT 419

Query: 2409 GFGDILKLVVLFTAPLHISDTSKKGSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVPNVA 2588
             +G  L+ V+LFTAPLHISD +KKGSV++RYLGLED +Y++P TS+GRLNP TTLV    
Sbjct: 420  DYGQSLRFVLLFTAPLHISDATKKGSVMIRYLGLEDCEYIQPTTSLGRLNPATTLV---- 475

Query: 2589 ASGGPIVKVGTVEWEEPFISKVPLGLRQKTFRLMTINKWAPSGFLYFPVTPSVHLPRTAG 2768
            ASG P+V+VGT +W EP + ++PLGL QK FRL+TI+KW  SGFL+ P+TPS H+P+ AG
Sbjct: 476  ASGAPVVQVGTSDWVEPPLLRLPLGLLQKKFRLLTISKWPKSGFLFLPMTPSSHIPKLAG 535

Query: 2769 NFVADLEQQCPLMHRSQENCQWRGTLKYHLTARLEGATDQLILPHRSLTFSAVLLSRILP 2948
             F  ++EQ  PLMHRSQEN QW G+L Y+L+ R  GAT Q +LP R + F A +L  IL 
Sbjct: 536  TFEGEVEQHSPLMHRSQENAQWCGSLTYYLSIRYSGATPQGVLPLRPVCFGATVLDNILG 595

Query: 2949 APCFIDNSTFKPLLPLLSVKDTFSLEQDHPFVEFTTPPGRWTNTHFGATEQYTWRTCPVW 3128
             PCF++  TF  ++P+    +T  L        + TPP RW NTHFGATE Y  RTCP W
Sbjct: 596  KPCFVEKDTFIQVMPMADPGETVYLPTTESIAFYETPPRRWVNTHFGATESYGVRTCPAW 655

Query: 3129 VLLQFPPKTMVQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYFFENTFIVG 3299
            VLLQFP +    L VRDVSLWVEP+I YRH +GGFP+  P P PA  Y++ENTF VG
Sbjct: 656  VLLQFPNEEASHLGVRDVSLWVEPNISYRHAVGGFPILKPTPPPAIDYYYENTFPVG 712


>gb|ADN88405.1| polyprotein, partial [Strawberry latent ringspot virus]
          Length = 712

 Score =  922 bits (2384), Expect = 0.0
 Identities = 448/717 (62%), Positives = 537/717 (74%)
 Frame = +3

Query: 1149 PLQPARLTRSASYMPIQRAGTKTVLTFEDNIAQVKEQQPVQARASFSFANISYGQQDRAA 1328
            PLQPARLTRSASYMPIQR+G KTVLTFEDN A +KEQQP+QARASFSF+ +SYGQ DRAA
Sbjct: 1    PLQPARLTRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQHDRAA 60

Query: 1329 LPSPPPQKCQFHNKVSCPCAQHTGNMEASGNHHEELVPASEGGTEGQFFSPQPVVHPQDS 1508
            LPS PPQKC FHN+V CPC QHTG  E SG H EELVPAS GGTE  FFSP+ +  P  +
Sbjct: 61   LPSAPPQKCSFHNRVGCPCTQHTGEAEPSGLH-EELVPASSGGTEAIFFSPKSIPVPGSA 119

Query: 1509 RFVGSHPFSFPINSNVGTVVYTLPIMRTSLRDTEWGRFYKGYRYLRCKPTVRLIGSGPIQ 1688
            +FVGSHPFSFPINSNVGT VY+LP++ TSL+DTEWGR+Y+ Y ++R KPTVRL+ S PIQ
Sbjct: 120  KFVGSHPFSFPINSNVGTTVYSLPLISTSLKDTEWGRYYRSYTFMRFKPTVRLVSSAPIQ 179

Query: 1689 AKGLLWLCYDPSETLSKYPSRERALALQGTWFMPGRHDSASLTVQELATPAGFCDMDTDV 1868
            AKGLLWLCYDP ETL+KYPSRERAL LQG WFMPGRHDS +LT+ ELATP+G+  M++D 
Sbjct: 180  AKGLLWLCYDPCETLAKYPSRERALMLQGVWFMPGRHDSVTLTIDELATPSGYSIMNSDH 239

Query: 1869 NGAFKVVIIKDLANFDVSDYGMELSMYLEVEKIGLGSVVTNEVLTTFYPLRQVVLDYELS 2048
            NGAFKVVIIKDL NF+V+D GMELS++L+V+ IG+G      +  +F PLRQVV+D++LS
Sbjct: 240  NGAFKVVIIKDLENFEVADLGMELSLFLDVQDIGMGIGPELPLTDSFLPLRQVVVDFDLS 299

Query: 2049 TTTSKGKAXXXXXXXXXXAHDEAQFYPSCSSSILENHRYWKGVLSLEVVFNLPAMAGGIV 2228
            TTT KGKA            D AQ+YPSCSSSILENHRYWKG L LEV+FNLPAM GG V
Sbjct: 300  TTTPKGKALVVPLNPLLPGFDGAQWYPSCSSSILENHRYWKGTLVLEVIFNLPAMGGGTV 359

Query: 2229 ELAFAYDTYDNVDGDTYRRFGSSVVDLRAHRILRARVPXXXXXXXXXXXXXXXFEVKPQT 2408
            E+ FA ++Y   + D YR FGS+VVDLRAHR+LRA+VP               F V P T
Sbjct: 360  EMGFANNSYSGWESDAYRYFGSTVVDLRAHRLLRAKVPLYGYGGYLMGGSGSLFAVPPLT 419

Query: 2409 GFGDILKLVVLFTAPLHISDTSKKGSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVPNVA 2588
             +G  L+ V+LFTAPLHISD +KKGSV++RYLGLED +Y++P TS+GRLNP TTLV    
Sbjct: 420  DYGQSLRFVLLFTAPLHISDATKKGSVMIRYLGLEDCEYIQPTTSLGRLNPATTLV---- 475

Query: 2589 ASGGPIVKVGTVEWEEPFISKVPLGLRQKTFRLMTINKWAPSGFLYFPVTPSVHLPRTAG 2768
            ASG P+V+VGT +W EP   ++PLGL QK FRL+TI+KW  SGFL+ P+TPS H+P+ AG
Sbjct: 476  ASGAPVVQVGTFDWVEPPSLRLPLGLLQKKFRLLTISKWPKSGFLFLPMTPSSHIPKLAG 535

Query: 2769 NFVADLEQQCPLMHRSQENCQWRGTLKYHLTARLEGATDQLILPHRSLTFSAVLLSRILP 2948
             F  ++EQ  PLMHRSQEN QW G+L Y+L+ R  GAT Q +LP R + F A +L  IL 
Sbjct: 536  TFEGEVEQHSPLMHRSQENAQWCGSLTYYLSIRYSGATPQGVLPLRPVCFGATVLDNILG 595

Query: 2949 APCFIDNSTFKPLLPLLSVKDTFSLEQDHPFVEFTTPPGRWTNTHFGATEQYTWRTCPVW 3128
             PCF++  TF  ++P+    +T  L        + TPP RW NTHFGATE Y  RTCP W
Sbjct: 596  KPCFVEKDTFIQVMPMADPGETVYLPTTESIAFYETPPRRWVNTHFGATESYGVRTCPAW 655

Query: 3129 VLLQFPPKTMVQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYFFENTFIVG 3299
            VLLQFP +    L VRDVSLWVEP+I YRH +GGFP+  P P PA  Y++ENTF VG
Sbjct: 656  VLLQFPNEEASHLGVRDVSLWVEPNISYRHAVGGFPILKPTPPPAIDYYYENTFPVG 712


>gb|ADN88406.1| polyprotein, partial [Strawberry latent ringspot virus]
          Length = 712

 Score =  921 bits (2381), Expect = 0.0
 Identities = 445/717 (62%), Positives = 540/717 (75%)
 Frame = +3

Query: 1149 PLQPARLTRSASYMPIQRAGTKTVLTFEDNIAQVKEQQPVQARASFSFANISYGQQDRAA 1328
            PLQPARLTRSASYMPIQR+G KTVLTFEDN A +KEQQP+QARASFSF+ +SYGQQDRAA
Sbjct: 1    PLQPARLTRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQQDRAA 60

Query: 1329 LPSPPPQKCQFHNKVSCPCAQHTGNMEASGNHHEELVPASEGGTEGQFFSPQPVVHPQDS 1508
            LPS P  KC FHN+V CPC QHTG  E SG H E+LVPA+ GGTE  FFSP+ V  P  +
Sbjct: 61   LPSAPSPKCSFHNRVGCPCKQHTGEAEPSGLH-EDLVPAASGGTEAIFFSPKSVPVPGSA 119

Query: 1509 RFVGSHPFSFPINSNVGTVVYTLPIMRTSLRDTEWGRFYKGYRYLRCKPTVRLIGSGPIQ 1688
            +FVGSHPFSFPINSNVGT VY+LP++ TSL+DTEWGR+Y+ Y ++R KPTVRLI S PIQ
Sbjct: 120  KFVGSHPFSFPINSNVGTTVYSLPLISTSLKDTEWGRYYRSYTFMRFKPTVRLISSAPIQ 179

Query: 1689 AKGLLWLCYDPSETLSKYPSRERALALQGTWFMPGRHDSASLTVQELATPAGFCDMDTDV 1868
            AKGLLWLCYDP ETL+KYPSRERAL LQG WFMPGRHDS +LT+ ELATP+G+  M++D 
Sbjct: 180  AKGLLWLCYDPCETLAKYPSRERALMLQGVWFMPGRHDSVTLTIDELATPSGYSIMNSDH 239

Query: 1869 NGAFKVVIIKDLANFDVSDYGMELSMYLEVEKIGLGSVVTNEVLTTFYPLRQVVLDYELS 2048
            NGAFKVVIIKDL NF+V+D GMELS++L+V+ IG+G      +  +F PLRQVV+D++LS
Sbjct: 240  NGAFKVVIIKDLENFEVADLGMELSLFLDVQDIGMGIGPELPLTDSFLPLRQVVVDFDLS 299

Query: 2049 TTTSKGKAXXXXXXXXXXAHDEAQFYPSCSSSILENHRYWKGVLSLEVVFNLPAMAGGIV 2228
            TTT KGKA            D AQ+YPSCSSSILENHRYWKG L LEV+FNLPAM GG V
Sbjct: 300  TTTPKGKALVVPLNPLLPGFDGAQWYPSCSSSILENHRYWKGTLVLEVIFNLPAMGGGTV 359

Query: 2229 ELAFAYDTYDNVDGDTYRRFGSSVVDLRAHRILRARVPXXXXXXXXXXXXXXXFEVKPQT 2408
            E+ FA ++Y   + D YR FGS+VVDLRAHR+LRA+VP               F V P T
Sbjct: 360  EMGFANNSYSGWESDAYRHFGSTVVDLRAHRLLRAKVPLYGYGGYLMGGSGSLFAVPPLT 419

Query: 2409 GFGDILKLVVLFTAPLHISDTSKKGSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVPNVA 2588
             +G  L+ V+LFTAPLHISDT+KKGSV++RYLGLED +Y++P TS+GRLNP TTLV    
Sbjct: 420  DYGQSLRFVLLFTAPLHISDTTKKGSVMIRYLGLEDCEYIQPTTSLGRLNPATTLV---- 475

Query: 2589 ASGGPIVKVGTVEWEEPFISKVPLGLRQKTFRLMTINKWAPSGFLYFPVTPSVHLPRTAG 2768
            ASG P+V+VGT +W EP + ++PLGL QK FRL+TI+KW  SGFL+FP+TPS H+P+  G
Sbjct: 476  ASGAPVVQVGTSDWMEPPLLRLPLGLLQKKFRLLTISKWPKSGFLFFPMTPSSHMPKLVG 535

Query: 2769 NFVADLEQQCPLMHRSQENCQWRGTLKYHLTARLEGATDQLILPHRSLTFSAVLLSRILP 2948
             F  ++EQ  PLMHRSQEN QW G+L Y+L+ R  GAT Q +LP R + F A +L  IL 
Sbjct: 536  TFEGEVEQHSPLMHRSQENAQWCGSLTYYLSIRYSGATPQGVLPMRPVCFGATVLDNILG 595

Query: 2949 APCFIDNSTFKPLLPLLSVKDTFSLEQDHPFVEFTTPPGRWTNTHFGATEQYTWRTCPVW 3128
             PCF++  TF  ++P+   ++T  L        + TPP RW NTHFGATE Y  RTCP W
Sbjct: 596  KPCFVEKDTFIQVMPMADPRETIYLPTTESVAFYETPPRRWVNTHFGATESYGVRTCPAW 655

Query: 3129 VLLQFPPKTMVQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYFFENTFIVG 3299
            VLLQFP +    L VRD+SLWVEP+I +RH +GGFP+  P P+P+  Y++ENTF VG
Sbjct: 656  VLLQFPNEEASHLGVRDISLWVEPNISFRHAVGGFPILKPTPAPSIDYYYENTFPVG 712


>gb|ADN88404.1| polyprotein, partial [Strawberry latent ringspot virus]
          Length = 712

 Score =  918 bits (2372), Expect = 0.0
 Identities = 443/717 (61%), Positives = 540/717 (75%)
 Frame = +3

Query: 1149 PLQPARLTRSASYMPIQRAGTKTVLTFEDNIAQVKEQQPVQARASFSFANISYGQQDRAA 1328
            PLQPARLTRSASYMP+QR+G KTVLTFEDN A +KEQQP+QARASFSF+ +SYGQQDRAA
Sbjct: 1    PLQPARLTRSASYMPVQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQQDRAA 60

Query: 1329 LPSPPPQKCQFHNKVSCPCAQHTGNMEASGNHHEELVPASEGGTEGQFFSPQPVVHPQDS 1508
            LPS P  KC FHN+V CPC QHTG  E SG H E+LVPA+ GGTE  FFSP+ +  P  +
Sbjct: 61   LPSAPSPKCPFHNRVGCPCKQHTGEAEPSGLH-EDLVPAASGGTEAIFFSPKSIPVPGSA 119

Query: 1509 RFVGSHPFSFPINSNVGTVVYTLPIMRTSLRDTEWGRFYKGYRYLRCKPTVRLIGSGPIQ 1688
            +FVGSHPFSFPINSNVGT VY+LP++ TSL+DTEWGR+Y+ Y ++R KPTVRL+ S PIQ
Sbjct: 120  KFVGSHPFSFPINSNVGTTVYSLPLISTSLKDTEWGRYYRSYTFMRFKPTVRLVSSAPIQ 179

Query: 1689 AKGLLWLCYDPSETLSKYPSRERALALQGTWFMPGRHDSASLTVQELATPAGFCDMDTDV 1868
            AKGLLWLCYDP ETL+KYPSRERAL LQG WFMPGRHDS +LT+ ELAT +G+  M++D 
Sbjct: 180  AKGLLWLCYDPCETLAKYPSRERALMLQGVWFMPGRHDSVTLTIDELATLSGYSIMNSDH 239

Query: 1869 NGAFKVVIIKDLANFDVSDYGMELSMYLEVEKIGLGSVVTNEVLTTFYPLRQVVLDYELS 2048
            NGAFKVVIIKDL NF+V+D GMELS++L+V+ IG+G      +  +F PLRQVV+D++LS
Sbjct: 240  NGAFKVVIIKDLENFEVADLGMELSLFLDVQDIGMGIGPELPLTDSFLPLRQVVVDFDLS 299

Query: 2049 TTTSKGKAXXXXXXXXXXAHDEAQFYPSCSSSILENHRYWKGVLSLEVVFNLPAMAGGIV 2228
            TTT KGKA            D AQ+YPSCSSSILENHRYWKG L LEV+FNLPAM GG V
Sbjct: 300  TTTPKGKALVIPLNPLLPGFDGAQWYPSCSSSILENHRYWKGTLVLEVIFNLPAMGGGTV 359

Query: 2229 ELAFAYDTYDNVDGDTYRRFGSSVVDLRAHRILRARVPXXXXXXXXXXXXXXXFEVKPQT 2408
            E+ FA ++Y   + D YR FGS+VVDLRAHR+LRA+VP               F V P T
Sbjct: 360  EMGFANNSYSGWESDAYRYFGSTVVDLRAHRLLRAKVPLYGYGGYLMGGSGSLFAVPPLT 419

Query: 2409 GFGDILKLVVLFTAPLHISDTSKKGSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVPNVA 2588
             +G  L+ V+LFTAPLHISDT+KKGSV++RYLGLED +Y++P TS+GRLNP TTLV    
Sbjct: 420  DYGQSLRFVLLFTAPLHISDTTKKGSVMIRYLGLEDCEYIQPTTSLGRLNPATTLV---- 475

Query: 2589 ASGGPIVKVGTVEWEEPFISKVPLGLRQKTFRLMTINKWAPSGFLYFPVTPSVHLPRTAG 2768
            ASG P+V+VGT +W EP + ++PLGL QK FRL+TI+KW  SGFL+FP+TPS H+P+ AG
Sbjct: 476  ASGAPVVQVGTSDWTEPPLLRLPLGLLQKKFRLLTISKWPKSGFLFFPMTPSSHMPKLAG 535

Query: 2769 NFVADLEQQCPLMHRSQENCQWRGTLKYHLTARLEGATDQLILPHRSLTFSAVLLSRILP 2948
             F  ++EQ  PLMHRSQEN QW G+L Y+L+ R  GAT Q +LP R + F A +L  IL 
Sbjct: 536  TFEGEVEQHSPLMHRSQENAQWCGSLTYYLSIRYSGATPQGVLPMRPVCFGATVLDNILD 595

Query: 2949 APCFIDNSTFKPLLPLLSVKDTFSLEQDHPFVEFTTPPGRWTNTHFGATEQYTWRTCPVW 3128
             PCF++  TF  ++P+   ++T  L        + TPP RW NTHFGATE Y  RTCP W
Sbjct: 596  KPCFVEKDTFIQVMPMADPRETIYLPTTESVAFYETPPRRWVNTHFGATESYGVRTCPAW 655

Query: 3129 VLLQFPPKTMVQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYFFENTFIVG 3299
            VLLQFP +    L VRDVSLWVEP+I +RH +GGFP+  P P+P+  Y++ENTF VG
Sbjct: 656  VLLQFPNEEASHLGVRDVSLWVEPNISFRHAVGGFPILKPTPAPSIDYYYENTFPVG 712


>gb|ADN88402.1| polyprotein, partial [Strawberry latent ringspot virus]
          Length = 712

 Score =  915 bits (2365), Expect = 0.0
 Identities = 441/717 (61%), Positives = 540/717 (75%)
 Frame = +3

Query: 1149 PLQPARLTRSASYMPIQRAGTKTVLTFEDNIAQVKEQQPVQARASFSFANISYGQQDRAA 1328
            PLQPARLTRSASYMPIQR+G KTVLTFEDN A +KEQQP+QARASFSF+ +SYGQQDRAA
Sbjct: 1    PLQPARLTRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQQDRAA 60

Query: 1329 LPSPPPQKCQFHNKVSCPCAQHTGNMEASGNHHEELVPASEGGTEGQFFSPQPVVHPQDS 1508
            LPS P  KC FHN+V CPC QHTG  E SG H E+LVPA+ GGTE  FFSP+ +  P  +
Sbjct: 61   LPSAPSPKCPFHNRVGCPCKQHTGEAEPSGLH-EDLVPAASGGTEAIFFSPKSIPVPGGA 119

Query: 1509 RFVGSHPFSFPINSNVGTVVYTLPIMRTSLRDTEWGRFYKGYRYLRCKPTVRLIGSGPIQ 1688
            +FVGSHPFSFPINSNVGT VY+LP++ TSL+DTEWGR+Y+ Y ++R KPTVRL+ S PIQ
Sbjct: 120  KFVGSHPFSFPINSNVGTTVYSLPLISTSLKDTEWGRYYRSYTFMRFKPTVRLVSSAPIQ 179

Query: 1689 AKGLLWLCYDPSETLSKYPSRERALALQGTWFMPGRHDSASLTVQELATPAGFCDMDTDV 1868
            AKGLLWLCYDP ETL+KYPSRERAL LQG WFMPGRHDS +LT+ ELATP+G+  M++D 
Sbjct: 180  AKGLLWLCYDPCETLAKYPSRERALMLQGVWFMPGRHDSVTLTIDELATPSGYSIMNSDH 239

Query: 1869 NGAFKVVIIKDLANFDVSDYGMELSMYLEVEKIGLGSVVTNEVLTTFYPLRQVVLDYELS 2048
            NGAFKVVIIK L NF+V+D GMELS++L+V+ IG+G      +  +F PLRQVV+D++LS
Sbjct: 240  NGAFKVVIIKALENFEVADLGMELSLFLDVQDIGMGIGPELPLTDSFLPLRQVVVDFDLS 299

Query: 2049 TTTSKGKAXXXXXXXXXXAHDEAQFYPSCSSSILENHRYWKGVLSLEVVFNLPAMAGGIV 2228
            TTT KGKA            D AQ+YPSCSSSILENHRYWKG L LEV+FNLPAM GG V
Sbjct: 300  TTTPKGKALVVPLNPLLPGFDGAQWYPSCSSSILENHRYWKGTLVLEVIFNLPAMGGGTV 359

Query: 2229 ELAFAYDTYDNVDGDTYRRFGSSVVDLRAHRILRARVPXXXXXXXXXXXXXXXFEVKPQT 2408
            E+ FA ++Y   + D YR FGS+VVDLRAHR+LRA+VP               F V P T
Sbjct: 360  EMGFANNSYSGWESDAYRYFGSTVVDLRAHRLLRAKVPLYGYGGYLMGGSGSLFAVPPLT 419

Query: 2409 GFGDILKLVVLFTAPLHISDTSKKGSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVPNVA 2588
             +G  L+ V+LFTAPLHISDT+KKGSV++R+LGLED +Y++P TS+GRLNP TTLV    
Sbjct: 420  DYGQSLRFVLLFTAPLHISDTTKKGSVMIRFLGLEDCEYIQPTTSLGRLNPATTLV---- 475

Query: 2589 ASGGPIVKVGTVEWEEPFISKVPLGLRQKTFRLMTINKWAPSGFLYFPVTPSVHLPRTAG 2768
            ASG P+V+VGT +W EP + ++PLGL QK FRL+TI+KW  SGFL+FP+TPS H+P+ AG
Sbjct: 476  ASGAPVVQVGTSDWTEPPLLRLPLGLLQKKFRLLTISKWPKSGFLFFPMTPSSHMPKLAG 535

Query: 2769 NFVADLEQQCPLMHRSQENCQWRGTLKYHLTARLEGATDQLILPHRSLTFSAVLLSRILP 2948
             F  ++EQ  PLMHRSQEN QW G+L Y+L+ R  GAT + +LP R + F A +L  IL 
Sbjct: 536  TFEGEVEQHSPLMHRSQENAQWCGSLTYYLSIRYSGATPRGVLPMRPVCFGATVLDNILD 595

Query: 2949 APCFIDNSTFKPLLPLLSVKDTFSLEQDHPFVEFTTPPGRWTNTHFGATEQYTWRTCPVW 3128
             PCF++  TF  ++P+   ++T  L        + TPP RW NTHFGATE Y  RTCP W
Sbjct: 596  KPCFVEKDTFIQVMPMADPRETIYLPTTESVAFYETPPRRWVNTHFGATESYGVRTCPAW 655

Query: 3129 VLLQFPPKTMVQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYFFENTFIVG 3299
            VLLQFP +    L +RDVSLWVEP+I +RH +GGFP+  P P+P+  Y++ENTF VG
Sbjct: 656  VLLQFPNEEASHLGIRDVSLWVEPNISFRHAVGGFPILKPTPAPSIDYYYENTFPVG 712


>ref|YP_227374.1| putative 40 kDa movement protein [Strawberry latent ringspot virus]
          Length = 366

 Score =  607 bits (1565), Expect = e-170
 Identities = 299/366 (81%), Positives = 326/366 (89%)
 Frame = +3

Query: 318  MTSFFGRRSTQEMPNVPSYSAKEMEVLKAAITECGINYADVVRAAQTESGKMAILTAANT 497
            M SFF RRST EMP+VPSYS +EMEVLK+AITECGINYADVVRAAQTESGK+AILTAANT
Sbjct: 1    MASFFSRRSTPEMPSVPSYSPREMEVLKSAITECGINYADVVRAAQTESGKLAILTAANT 60

Query: 498  SQLKSLIATTSTSNALARLKEKPKAIVHVSEGVGRQVLCDDKLTHQTTVVHTPEPLFXXX 677
            + LKSL+ATT+T +A  RL E PKAIVHV+EGVG+QVLCDDKLTHQTTVVHTP+ ++   
Sbjct: 61   NSLKSLVATTTTQSAFRRLSESPKAIVHVAEGVGKQVLCDDKLTHQTTVVHTPKKVYDHM 120

Query: 678  XXXXXXXXXDTGGEEPKYRSADVCTIQLGVTSHLSGHSNQIAGVVLLDGNRSTQEQAVLG 857
                     DT  EEPKYRSAD+CTIQLGVTSHLSGHSNQIAG+VLLDGNR+TQEQAVLG
Sbjct: 121  RSKRLKKTKDTDEEEPKYRSADICTIQLGVTSHLSGHSNQIAGIVLLDGNRATQEQAVLG 180

Query: 858  IGVLPLYEAHSHALFAPRLNIHYDDPNFVNRLQLLTTFSDDVLGGGSPAMSYSTISVVRH 1037
            IGVLPLYEAHSHALFAPRLNIHYDDPNFV+RLQLLTTFSDDVLGGGSPAMSYSTISVVRH
Sbjct: 181  IGVLPLYEAHSHALFAPRLNIHYDDPNFVDRLQLLTTFSDDVLGGGSPAMSYSTISVVRH 240

Query: 1038 NITDAHYLPEPLPYSKLKEKYPCGVRGLSNFQAAEIAPLQPARLTRSASYMPIQRAGTKT 1217
            NI DAH+LPEPLPYSKLKEKYP G++GLSNFQAAEIAPLQPARLTRSASYMPI+R+G KT
Sbjct: 241  NIADAHFLPEPLPYSKLKEKYPSGLKGLSNFQAAEIAPLQPARLTRSASYMPIRRSGAKT 300

Query: 1218 VLTFEDNIAQVKEQQPVQARASFSFANISYGQQDRAALPSPPPQKCQFHNKVSCPCAQHT 1397
            VLTFEDN A ++EQQP+QARASFSF+ ISYGQQDRAALP  P  KC FHN+V CPC QHT
Sbjct: 301  VLTFEDNQASLREQQPLQARASFSFSGISYGQQDRAALPFAPSPKCSFHNRVGCPCKQHT 360

Query: 1398 GNMEAS 1415
            G  EAS
Sbjct: 361  GEAEAS 366


>ref|YP_227375.1| large coat protein [Strawberry latent ringspot virus]
          Length = 388

 Score =  518 bits (1333), Expect = e-143
 Identities = 252/384 (65%), Positives = 298/384 (77%)
 Frame = +3

Query: 1425 HEELVPASEGGTEGQFFSPQPVVHPQDSRFVGSHPFSFPINSNVGTVVYTLPIMRTSLRD 1604
            HEELVPA+ GGTE  FFSP+ +  P  ++FVGSHPFSFPINSNVGT VYTLP++RTSL+D
Sbjct: 3    HEELVPAASGGTEAIFFSPRSIPLPGSAKFVGSHPFSFPINSNVGTTVYTLPLIRTSLKD 62

Query: 1605 TEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETLSKYPSRERALALQGTWF 1784
            TEWGR+YK Y ++R KPTVRL+ S PIQAKGLLWLCYDP ETL+KYPSRERAL LQGTWF
Sbjct: 63   TEWGRYYKSYTFMRFKPTVRLVSSAPIQAKGLLWLCYDPCETLAKYPSRERALMLQGTWF 122

Query: 1785 MPGRHDSASLTVQELATPAGFCDMDTDVNGAFKVVIIKDLANFDVSDYGMELSMYLEVEK 1964
            MPGRHDS +LT+ ELATP+G+  M +D NGAFKVVIIKDL NF+V+D GMELS++L+V+ 
Sbjct: 123  MPGRHDSVTLTIDELATPSGYSIMTSDHNGAFKVVIIKDLENFEVADLGMELSLFLDVQD 182

Query: 1965 IGLGSVVTNEVLTTFYPLRQVVLDYELSTTTSKGKAXXXXXXXXXXAHDEAQFYPSCSSS 2144
            IG+G      +  +F PLRQVV+D++LSTTT KGKA            D AQ+YPSCSSS
Sbjct: 183  IGMGMGPEMPLTDSFLPLRQVVVDFDLSTTTPKGKALVVPLNPLLPGFDGAQWYPSCSSS 242

Query: 2145 ILENHRYWKGVLSLEVVFNLPAMAGGIVELAFAYDTYDNVDGDTYRRFGSSVVDLRAHRI 2324
            ILENHRYWKG L LEV+FNLPAM GG VE+ FA D+    + D YR FGS+VVDLRAHR+
Sbjct: 243  ILENHRYWKGTLVLEVIFNLPAMGGGTVEMGFANDSCSGRESDAYRYFGSTVVDLRAHRL 302

Query: 2325 LRARVPXXXXXXXXXXXXXXXFEVKPQTGFGDILKLVVLFTAPLHISDTSKKGSVLVRYL 2504
            LRARVP               F V P T +G  L+ V+LFTAPLHISDT+KKGSV+VRYL
Sbjct: 303  LRARVPLHGYGGYLMGGSGSLFAVPPLTDYGQSLRFVLLFTAPLHISDTTKKGSVMVRYL 362

Query: 2505 GLEDLDYLEPATSIGRLNPKTTLV 2576
            GLED +Y++P TS+GRLNP TTLV
Sbjct: 363  GLEDCEYIQPTTSLGRLNPATTLV 386


>ref|YP_227376.1| small coat protein [Strawberry latent ringspot virus]
          Length = 235

 Score =  273 bits (699), Expect = 3e-70
 Identities = 123/235 (52%), Positives = 160/235 (68%)
 Frame = +3

Query: 2595 GGPIVKVGTVEWEEPFISKVPLGLRQKTFRLMTINKWAPSGFLYFPVTPSVHLPRTAGNF 2774
            G P+V+VGT +W EP + ++PLGL Q+ FRL+TI+KW  SGFL+FP TPS H+P+  G F
Sbjct: 1    GAPVVQVGTSDWVEPPLFRLPLGLLQRRFRLLTISKWPKSGFLFFPTTPSSHIPKLVGTF 60

Query: 2775 VADLEQQCPLMHRSQENCQWRGTLKYHLTARLEGATDQLILPHRSLTFSAVLLSRILPAP 2954
              ++EQ  PLMHRSQEN QW G+L Y+L+ R  GAT Q +LP R +   A +L  I+  P
Sbjct: 61   EGEVEQHSPLMHRSQENAQWSGSLTYYLSIRYSGATPQGVLPLRPVCLGATILDNIMGKP 120

Query: 2955 CFIDNSTFKPLLPLLSVKDTFSLEQDHPFVEFTTPPGRWTNTHFGATEQYTWRTCPVWVL 3134
            CFI+  TF  ++P+   ++T  L        + TPP RW NTHFGATE Y  RTCP WVL
Sbjct: 121  CFIEKDTFVQVMPMADPRETIYLPTTDSVASYVTPPRRWVNTHFGATEMYGVRTCPAWVL 180

Query: 3135 LQFPPKTMVQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYFFENTFIVG 3299
            LQFP +    L VRD+SLWVEP + +RH +GGFP+  P P+PA  Y++ENTF VG
Sbjct: 181  LQFPNEEASHLGVRDISLWVEPKVTFRHAVGGFPILKPTPAPAIDYYYENTFPVG 235


>gb|ABC58719.1| coat protein [Strawberry latent ringspot virus]
            gi|84380737|gb|ABC58720.1| coat protein [Strawberry
            latent ringspot virus]
          Length = 165

 Score =  261 bits (666), Expect = 2e-66
 Identities = 122/166 (73%), Positives = 141/166 (84%)
 Frame = +3

Query: 1149 PLQPARLTRSASYMPIQRAGTKTVLTFEDNIAQVKEQQPVQARASFSFANISYGQQDRAA 1328
            PLQPARLTRSASYMPIQR+G KTVLTFEDN A +KEQQP+QARASFSF+ +SYGQQDRA+
Sbjct: 1    PLQPARLTRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQQDRAS 60

Query: 1329 LPSPPPQKCQFHNKVSCPCAQHTGNMEASGNHHEELVPASEGGTEGQFFSPQPVVHPQDS 1508
            LPS P  KC FHN+V CPC QHTG  EASG  HEEL+PA+ GGTE  FFSP+ +  P  +
Sbjct: 61   LPSAPSPKCSFHNRVGCPCKQHTGEAEASG-LHEELIPAASGGTEAIFFSPKSIPLPGSA 119

Query: 1509 RFVGSHPFSFPINSNVGTVVYTLPIMRTSLRDTEWGRFYKGYRYLR 1646
            +FVGSHPFSFPINSNVGT VYTLP++RTSL+DTEWGR+YK Y ++R
Sbjct: 120  KFVGSHPFSFPINSNVGTTVYTLPLIRTSLKDTEWGRYYKSYTFMR 165


>gb|AAR99477.1| coat protein [Strawberry latent ringspot virus]
            gi|41745996|gb|AAS10194.1| coat protein [Strawberry
            latent ringspot virus]
          Length = 165

 Score =  258 bits (658), Expect = 2e-65
 Identities = 122/166 (73%), Positives = 140/166 (84%)
 Frame = +3

Query: 1149 PLQPARLTRSASYMPIQRAGTKTVLTFEDNIAQVKEQQPVQARASFSFANISYGQQDRAA 1328
            PLQPARLTRSASYMPI+R+G KTVLTFEDN A ++EQQP+QARASFSF+ ISYGQQDRAA
Sbjct: 1    PLQPARLTRSASYMPIRRSGAKTVLTFEDNQASLREQQPLQARASFSFSGISYGQQDRAA 60

Query: 1329 LPSPPPQKCQFHNKVSCPCAQHTGNMEASGNHHEELVPASEGGTEGQFFSPQPVVHPQDS 1508
            LP  P  KC FHN+V CPC QHTG  EASG  HEELVPA+ GGTE  FFSP+ +  P  +
Sbjct: 61   LPFAPSPKCSFHNRVGCPCKQHTGEAEASG-LHEELVPAASGGTEAIFFSPKSIPLPGSA 119

Query: 1509 RFVGSHPFSFPINSNVGTVVYTLPIMRTSLRDTEWGRFYKGYRYLR 1646
            +FVGSHPFSFPINSNVGT VYTLP++RTSL+DTEWGR+YK Y ++R
Sbjct: 120  KFVGSHPFSFPINSNVGTTVYTLPLIRTSLKDTEWGRYYKSYTFMR 165


>gb|ABC58721.2| coat protein [Strawberry latent ringspot virus]
          Length = 165

 Score =  256 bits (655), Expect = 4e-65
 Identities = 120/166 (72%), Positives = 140/166 (84%)
 Frame = +3

Query: 1149 PLQPARLTRSASYMPIQRAGTKTVLTFEDNIAQVKEQQPVQARASFSFANISYGQQDRAA 1328
            PLQPARLTRSASYMPIQR+G KTVLTFEDN A +KEQQP+QARASFSF+ +SYGQ DRAA
Sbjct: 1    PLQPARLTRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQHDRAA 60

Query: 1329 LPSPPPQKCQFHNKVSCPCAQHTGNMEASGNHHEELVPASEGGTEGQFFSPQPVVHPQDS 1508
            LPS PP KC FHN+V CPC QHTG  E+SG  HEELVPAS GGTE  FFSP+ +  P  +
Sbjct: 61   LPSAPPSKCSFHNRVGCPCKQHTGETESSG-LHEELVPASSGGTEAIFFSPKSIPVPGSA 119

Query: 1509 RFVGSHPFSFPINSNVGTVVYTLPIMRTSLRDTEWGRFYKGYRYLR 1646
            +FVGS+PFSFPINSNVGT VY+LP++ TSL+DTEWGR+Y+ Y ++R
Sbjct: 120  KFVGSYPFSFPINSNVGTTVYSLPLISTSLKDTEWGRYYRSYTFMR 165


>gb|AHB30925.1| coat protein, partial [Strawberry latent ringspot virus]
          Length = 152

 Score =  240 bits (613), Expect = 3e-60
 Identities = 113/153 (73%), Positives = 129/153 (84%)
 Frame = +3

Query: 1170 TRSASYMPIQRAGTKTVLTFEDNIAQVKEQQPVQARASFSFANISYGQQDRAALPSPPPQ 1349
            TRSASYMPIQR+G KTVLTFEDN A +KEQQP+QARASFSF+ +SYGQ DRAALPS PPQ
Sbjct: 1    TRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQHDRAALPSAPPQ 60

Query: 1350 KCQFHNKVSCPCAQHTGNMEASGNHHEELVPASEGGTEGQFFSPQPVVHPQDSRFVGSHP 1529
            KC FHN+V CPC QHTG  E SG  HEELVPAS GGTE  FFSP+ +  P  ++FVGSHP
Sbjct: 61   KCSFHNRVGCPCTQHTGEAEPSG-LHEELVPASSGGTEAIFFSPKSIPVPGSAKFVGSHP 119

Query: 1530 FSFPINSNVGTVVYTLPIMRTSLRDTEWGRFYK 1628
            FSFPINSNVGT VY+LP++ TSL+DTEWGR+Y+
Sbjct: 120  FSFPINSNVGTTVYSLPLISTSLKDTEWGRYYR 152


>gb|AHB30924.1| coat protein, partial [Strawberry latent ringspot virus]
            gi|560369183|gb|AHB30926.1| coat protein, partial
            [Strawberry latent ringspot virus]
          Length = 152

 Score =  240 bits (612), Expect = 4e-60
 Identities = 113/153 (73%), Positives = 130/153 (84%)
 Frame = +3

Query: 1170 TRSASYMPIQRAGTKTVLTFEDNIAQVKEQQPVQARASFSFANISYGQQDRAALPSPPPQ 1349
            TRSASYMPIQR+G KTVLTFEDN A ++EQQP+QARASFSF+ +SYGQQDRAALPS P  
Sbjct: 1    TRSASYMPIQRSGAKTVLTFEDNQASLREQQPLQARASFSFSGVSYGQQDRAALPSAPSP 60

Query: 1350 KCQFHNKVSCPCAQHTGNMEASGNHHEELVPASEGGTEGQFFSPQPVVHPQDSRFVGSHP 1529
            KC FHN+V CPC QHTG  EASG  HEELVPA+ GGTE  FFSP+ +  P  ++FVGSHP
Sbjct: 61   KCSFHNRVGCPCKQHTGEAEASG-LHEELVPAASGGTEAIFFSPKSIPLPGSAKFVGSHP 119

Query: 1530 FSFPINSNVGTVVYTLPIMRTSLRDTEWGRFYK 1628
            FSFPINSNVGT VYTLP++RTSL+DTEWGR+Y+
Sbjct: 120  FSFPINSNVGTTVYTLPLIRTSLKDTEWGRYYR 152


>gb|AHB30923.1| coat protein, partial [Strawberry latent ringspot virus]
          Length = 152

 Score =  238 bits (607), Expect = 2e-59
 Identities = 113/153 (73%), Positives = 129/153 (84%)
 Frame = +3

Query: 1170 TRSASYMPIQRAGTKTVLTFEDNIAQVKEQQPVQARASFSFANISYGQQDRAALPSPPPQ 1349
            TRSASYMPIQR+G KTVLTFEDN A ++EQQP+QARASFSF+ +SYGQQDRAALPS P  
Sbjct: 1    TRSASYMPIQRSGAKTVLTFEDNQASLREQQPLQARASFSFSGVSYGQQDRAALPSAPSP 60

Query: 1350 KCQFHNKVSCPCAQHTGNMEASGNHHEELVPASEGGTEGQFFSPQPVVHPQDSRFVGSHP 1529
            KC FHN+V CPC QHTG  EASG  HEELVPA+ GGTE  FFSP+ +  P  ++ VGSHP
Sbjct: 61   KCSFHNRVGCPCKQHTGEAEASG-LHEELVPAASGGTEAIFFSPKSIPLPGSAKSVGSHP 119

Query: 1530 FSFPINSNVGTVVYTLPIMRTSLRDTEWGRFYK 1628
            FSFPINSNVGT VYTLP++RTSL+DTEWGR+YK
Sbjct: 120  FSFPINSNVGTTVYTLPLIRTSLKDTEWGRYYK 152


>gb|AEF97400.1| coat protein [Strawberry latent ringspot virus]
          Length = 148

 Score =  223 bits (568), Expect = 5e-55
 Identities = 103/147 (70%), Positives = 121/147 (82%)
 Frame = +3

Query: 1194 IQRAGTKTVLTFEDNIAQVKEQQPVQARASFSFANISYGQQDRAALPSPPPQKCQFHNKV 1373
            IQR+G KTVLTFEDN A +KEQQP+QARASFSF+ +SYGQ DRAALPS PP KC FHN+V
Sbjct: 2    IQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQHDRAALPSAPPSKCSFHNRV 61

Query: 1374 SCPCAQHTGNMEASGNHHEELVPASEGGTEGQFFSPQPVVHPQDSRFVGSHPFSFPINSN 1553
             CPC QHTG  E SG  HEEL+PA+ GGTE  FFSP+ +  P  ++FVGSHPFSFPINSN
Sbjct: 62   GCPCKQHTGETEPSG-LHEELIPAASGGTEAIFFSPKSIPVPGGAKFVGSHPFSFPINSN 120

Query: 1554 VGTVVYTLPIMRTSLRDTEWGRFYKGY 1634
            VGT VY+LP++ TSL+DTEWGR+Y+ Y
Sbjct: 121  VGTTVYSLPLISTSLKDTEWGRYYRSY 147


>gb|AEF97401.1| coat protein [Strawberry latent ringspot virus]
          Length = 146

 Score =  221 bits (564), Expect = 1e-54
 Identities = 102/146 (69%), Positives = 120/146 (82%)
 Frame = +3

Query: 1197 QRAGTKTVLTFEDNIAQVKEQQPVQARASFSFANISYGQQDRAALPSPPPQKCQFHNKVS 1376
            QR+G KTVLTFEDN A +KEQQP+QARASFSF+ +SYGQ DRAALPS PP KC FHN+V 
Sbjct: 1    QRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQHDRAALPSAPPSKCSFHNRVG 60

Query: 1377 CPCAQHTGNMEASGNHHEELVPASEGGTEGQFFSPQPVVHPQDSRFVGSHPFSFPINSNV 1556
            CPC QHTG  E SG  HEEL+PA+ GGTE  FFSP+ +  P  ++FVGSHPFSFPINSNV
Sbjct: 61   CPCKQHTGETEPSG-LHEELIPAASGGTEAIFFSPKSIPVPGGAKFVGSHPFSFPINSNV 119

Query: 1557 GTVVYTLPIMRTSLRDTEWGRFYKGY 1634
            GT VY+LP++ TSL+DTEWGR+Y+ Y
Sbjct: 120  GTTVYSLPLISTSLKDTEWGRYYRSY 145


>gb|AAY56484.1| unknown [Strawberry latent ringspot virus]
          Length = 173

 Score = 61.2 bits (147), Expect = 3e-06
 Identities = 27/42 (64%), Positives = 33/42 (78%), Gaps = 2/42 (4%)
 Frame = +3

Query: 3309 FSS*AFLSKNIPGPDGH*SGKPVNSVCHYHGSTW--LFSFSV 3428
            F S  FL +NIPGPDGH  GKPVN VCHYHG+TW  +F++S+
Sbjct: 132  FFSYVFLKENIPGPDGHLLGKPVNFVCHYHGTTWFRVFNYSL 173