BLASTX nr result
ID: Paeonia24_contig00035950
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Paeonia24_contig00035950
(318 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ADD31154.1| RNA polymerase beta'' subunit protein [Lonicera j... 126 1e-38
ref|YP_008963470.1| RNA polymerase beta' subunit (chloroplast) [... 126 4e-38
ref|YP_004564093.1| RNA polymerase beta' subunit [Nelumbo nucife... 127 5e-38
gb|ADD31151.1| RNA polymerase beta'' subunit protein [Dillenia i... 123 5e-38
ref|YP_001294174.1| RNA polymerase beta' subunit [Buxus microphy... 125 7e-38
ref|YP_004563857.1| RNA polymerase beta' subunit [Nelumbo lutea]... 127 1e-37
gb|AHE41658.1| RNA polymerase beta' subunit, partial (chloroplas... 124 1e-37
sp|Q3C1G9.1|RPOC2_NICSY RecName: Full=DNA-directed RNA polymeras... 120 2e-37
sp|Q33C48.1|RPOC2_NICTO RecName: Full=DNA-directed RNA polymeras... 120 2e-37
ref|YP_004891590.1| rpoC2 gene product (chloroplast) [Nicotiana ... 120 2e-37
sp|Q8S8Y1.1|RPOC2_ATRBE RecName: Full=DNA-directed RNA polymeras... 120 2e-37
ref|NP_054486.2| RNA polymerase beta'' subunit [Nicotiana tabacu... 120 2e-37
ref|YP_398849.2| RNA polymerase beta'' subunit [Nicotiana toment... 120 2e-37
ref|NP_783222.2| RNA polymerase beta'' subunit [Atropa belladonna] 120 2e-37
prf||1211235K rpoC-like ORF 862 120 2e-37
ref|YP_008081447.1| RNA polymerase beta'' subunit (chloroplast) ... 124 2e-37
ref|YP_008081355.1| RNA polymerase beta'' subunit (chloroplast) ... 124 2e-37
ref|YP_762251.1| RNA polymerase beta' subunit-2 [Morus indica] g... 123 3e-37
ref|YP_740555.1| RNA polymerase beta'' subunit [Platanus occiden... 125 3e-37
gb|EXB81185.1| DNA-directed RNA polymerase subunit beta'' [Morus... 123 3e-37
>gb|ADD31154.1| RNA polymerase beta'' subunit protein [Lonicera japonica]
Length = 1390
Score = 126 bits (317), Expect(3) = 1e-38
Identities = 65/75 (86%), Positives = 70/75 (93%)
Frame = +2
Query: 2 EGMSNVFLPGELIGLWRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETTRV 181
+GMSNVFLPGELIGL RAERTGRALEEAICYRA+LLGITRASLNTQSFISEASFQET RV
Sbjct: 1239 DGMSNVFLPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETARV 1298
Query: 182 LAKAALRGLVERPEG 226
LAKAALRG ++ +G
Sbjct: 1299 LAKAALRGRIDWLKG 1313
Score = 40.8 bits (94), Expect(3) = 1e-38
Identities = 20/29 (68%), Positives = 21/29 (72%)
Frame = +3
Query: 204 DWLKGLKEIVVLGEIIPVGTRFKA*QHSS 290
DWLKGLK VVLG +IPVGT FK H S
Sbjct: 1309 DWLKGLKANVVLGGMIPVGTGFKGLVHPS 1337
Score = 38.9 bits (89), Expect(3) = 1e-38
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +1
Query: 262 PDSKHNNIPLETKKRNLFE 318
P KHNNIPLETKK+NLFE
Sbjct: 1336 PSRKHNNIPLETKKKNLFE 1354
>ref|YP_008963470.1| RNA polymerase beta' subunit (chloroplast) [Penthorum chinense]
gi|403226771|gb|AFR25650.1| RNA polymerase beta' subunit
(chloroplast) [Penthorum chinense]
Length = 1387
Score = 126 bits (316), Expect(3) = 4e-38
Identities = 65/75 (86%), Positives = 70/75 (93%)
Frame = +2
Query: 2 EGMSNVFLPGELIGLWRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETTRV 181
+GMSNVF PGELIGL RAERTGRALEEAICYRA+LLGITRASLNTQSFISEASFQETTRV
Sbjct: 1236 DGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETTRV 1295
Query: 182 LAKAALRGLVERPEG 226
LAKAALRG ++ +G
Sbjct: 1296 LAKAALRGRIDWLKG 1310
Score = 43.1 bits (100), Expect(3) = 4e-38
Identities = 21/29 (72%), Positives = 22/29 (75%)
Frame = +3
Query: 204 DWLKGLKEIVVLGEIIPVGTRFKA*QHSS 290
DWLKGLKE VVLG +IPVGT FK H S
Sbjct: 1306 DWLKGLKENVVLGGMIPVGTGFKGLGHRS 1334
Score = 35.0 bits (79), Expect(3) = 4e-38
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = +1
Query: 271 KHNNIPLETKKRNLFE 318
+HNNIPLETKK+NLFE
Sbjct: 1336 QHNNIPLETKKKNLFE 1351
>ref|YP_004564093.1| RNA polymerase beta' subunit [Nelumbo nucifera]
gi|224474212|gb|ACN49398.1| RNA polymerase beta' subunit
[Nelumbo nucifera] gi|290489544|gb|ADD31156.1| RNA
polymerase beta'' subunit protein [Nelumbo nucifera]
gi|383286787|gb|AFH01437.1| RNA polymerase beta'' subunit
(chloroplast) [Nelumbo nucifera]
gi|519666902|gb|AGO98514.1| RNA polymerase beta' subunit
(chloroplast) [Nelumbo nucifera]
Length = 1390
Score = 127 bits (318), Expect(3) = 5e-38
Identities = 66/75 (88%), Positives = 70/75 (93%)
Frame = +2
Query: 2 EGMSNVFLPGELIGLWRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETTRV 181
+GMSNVFLPGELIGL RAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQET RV
Sbjct: 1239 DGMSNVFLPGELIGLLRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETARV 1298
Query: 182 LAKAALRGLVERPEG 226
LAKAALRG ++ +G
Sbjct: 1299 LAKAALRGRIDWLKG 1313
Score = 44.3 bits (103), Expect(3) = 5e-38
Identities = 22/29 (75%), Positives = 22/29 (75%)
Frame = +3
Query: 204 DWLKGLKEIVVLGEIIPVGTRFKA*QHSS 290
DWLKGLKE VVLG IIPVGT FK H S
Sbjct: 1309 DWLKGLKENVVLGGIIPVGTGFKGLVHRS 1337
Score = 32.7 bits (73), Expect(3) = 5e-38
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = +1
Query: 271 KHNNIPLETKKRNLFE 318
+HNNIPLE KK+NLFE
Sbjct: 1339 QHNNIPLEIKKKNLFE 1354
>gb|ADD31151.1| RNA polymerase beta'' subunit protein [Dillenia indica]
Length = 1370
Score = 123 bits (309), Expect(3) = 5e-38
Identities = 64/75 (85%), Positives = 69/75 (92%)
Frame = +2
Query: 2 EGMSNVFLPGELIGLWRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETTRV 181
+GMSNVF PGELIGL RAERTGRALEEAICYRAVLLGIT+ASLNTQSFISEASFQET RV
Sbjct: 1236 DGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARV 1295
Query: 182 LAKAALRGLVERPEG 226
LAKAALRG ++ +G
Sbjct: 1296 LAKAALRGRIDWLKG 1310
Score = 43.1 bits (100), Expect(3) = 5e-38
Identities = 21/29 (72%), Positives = 22/29 (75%)
Frame = +3
Query: 204 DWLKGLKEIVVLGEIIPVGTRFKA*QHSS 290
DWLKGLKE VVLG +IPVGT FK H S
Sbjct: 1306 DWLKGLKENVVLGGMIPVGTGFKGLVHPS 1334
Score = 37.4 bits (85), Expect(3) = 5e-38
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = +1
Query: 262 PDSKHNNIPLETKKRNLFE 318
P +HNNIPLETKK+NLFE
Sbjct: 1333 PSRQHNNIPLETKKKNLFE 1351
>ref|YP_001294174.1| RNA polymerase beta' subunit [Buxus microphylla]
gi|212277016|sp|A6MM26.1|RPOC2_BUXMI RecName:
Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|146762275|gb|ABQ45239.1| RNA polymerase beta' subunit
[Buxus microphylla]
Length = 1391
Score = 125 bits (315), Expect(3) = 7e-38
Identities = 66/75 (88%), Positives = 69/75 (92%)
Frame = +2
Query: 2 EGMSNVFLPGELIGLWRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETTRV 181
EGMSNVF PGELIGL RAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQET RV
Sbjct: 1238 EGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETARV 1297
Query: 182 LAKAALRGLVERPEG 226
LAKAALRG ++ +G
Sbjct: 1298 LAKAALRGRIDWLKG 1312
Score = 43.5 bits (101), Expect(3) = 7e-38
Identities = 21/29 (72%), Positives = 22/29 (75%)
Frame = +3
Query: 204 DWLKGLKEIVVLGEIIPVGTRFKA*QHSS 290
DWLKGLKE VVLG +IPVGT FK H S
Sbjct: 1308 DWLKGLKENVVLGGLIPVGTGFKVLVHRS 1336
Score = 34.3 bits (77), Expect(3) = 7e-38
Identities = 13/16 (81%), Positives = 16/16 (100%)
Frame = +1
Query: 271 KHNNIPLETKKRNLFE 318
+HNNIPLETKK+N+FE
Sbjct: 1338 QHNNIPLETKKKNIFE 1353
>ref|YP_004563857.1| RNA polymerase beta' subunit [Nelumbo lutea]
gi|224474124|gb|ACN49313.1| RNA polymerase beta' subunit
[Nelumbo lutea] gi|383286882|gb|AFH01531.1| RNA
polymerase beta'' subunit (chloroplast) [Nelumbo lutea]
Length = 1390
Score = 127 bits (318), Expect(3) = 1e-37
Identities = 66/75 (88%), Positives = 70/75 (93%)
Frame = +2
Query: 2 EGMSNVFLPGELIGLWRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETTRV 181
+GMSNVFLPGELIGL RAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQET RV
Sbjct: 1239 DGMSNVFLPGELIGLLRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETARV 1298
Query: 182 LAKAALRGLVERPEG 226
LAKAALRG ++ +G
Sbjct: 1299 LAKAALRGRIDWLKG 1313
Score = 43.1 bits (100), Expect(3) = 1e-37
Identities = 21/29 (72%), Positives = 22/29 (75%)
Frame = +3
Query: 204 DWLKGLKEIVVLGEIIPVGTRFKA*QHSS 290
DWLKGLKE VVLG +IPVGT FK H S
Sbjct: 1309 DWLKGLKENVVLGGMIPVGTGFKGLVHRS 1337
Score = 32.7 bits (73), Expect(3) = 1e-37
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = +1
Query: 271 KHNNIPLETKKRNLFE 318
+HNNIPLE KK+NLFE
Sbjct: 1339 QHNNIPLEIKKKNLFE 1354
>gb|AHE41658.1| RNA polymerase beta' subunit, partial (chloroplast) [Cercidiphyllum
japonicum]
Length = 1372
Score = 124 bits (311), Expect(3) = 1e-37
Identities = 64/75 (85%), Positives = 69/75 (92%)
Frame = +2
Query: 2 EGMSNVFLPGELIGLWRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETTRV 181
+GMSNVF PGELIGL RAERTGRALEEAICYRA+LLGITRASLNTQSFISEASFQET RV
Sbjct: 1221 DGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETARV 1280
Query: 182 LAKAALRGLVERPEG 226
LAKAALRG ++ +G
Sbjct: 1281 LAKAALRGRIDWLKG 1295
Score = 43.5 bits (101), Expect(3) = 1e-37
Identities = 21/29 (72%), Positives = 22/29 (75%)
Frame = +3
Query: 204 DWLKGLKEIVVLGEIIPVGTRFKA*QHSS 290
DWLKGLKE VVLG +IPVGT FK H S
Sbjct: 1291 DWLKGLKENVVLGGLIPVGTGFKGLVHRS 1319
Score = 35.0 bits (79), Expect(3) = 1e-37
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = +1
Query: 271 KHNNIPLETKKRNLFE 318
+HNNIPLETKK+NLFE
Sbjct: 1321 QHNNIPLETKKKNLFE 1336
>sp|Q3C1G9.1|RPOC2_NICSY RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|239977080|sp|P38550.2|RPOC2_TOBAC RecName:
Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|2924258|emb|CAA77410.1| RNA polymerase beta'' subunit
[Nicotiana tabacum] gi|77799548|dbj|BAE46637.1| RNA
polymerase beta'' subunit [Nicotiana sylvestris]
Length = 1392
Score = 120 bits (302), Expect(3) = 2e-37
Identities = 63/75 (84%), Positives = 67/75 (89%)
Frame = +2
Query: 2 EGMSNVFLPGELIGLWRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETTRV 181
+GMSNVF PGELIGL RAER GRALEEAICYR VLLGITRASLNTQSFISEASFQET RV
Sbjct: 1241 DGMSNVFSPGELIGLLRAERMGRALEEAICYRVVLLGITRASLNTQSFISEASFQETARV 1300
Query: 182 LAKAALRGLVERPEG 226
LAKAALRG ++ +G
Sbjct: 1301 LAKAALRGRIDWLKG 1315
Score = 43.9 bits (102), Expect(3) = 2e-37
Identities = 21/29 (72%), Positives = 22/29 (75%)
Frame = +3
Query: 204 DWLKGLKEIVVLGEIIPVGTRFKA*QHSS 290
DWLKGLKE VVLG +IPVGT FK H S
Sbjct: 1311 DWLKGLKENVVLGGVIPVGTGFKGLVHPS 1339
Score = 37.7 bits (86), Expect(3) = 2e-37
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = +1
Query: 262 PDSKHNNIPLETKKRNLFE 318
P +HNNIPLETKK+NLFE
Sbjct: 1338 PSKQHNNIPLETKKKNLFE 1356
>sp|Q33C48.1|RPOC2_NICTO RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|80750911|dbj|BAE47987.1| RNA polymerase beta'' subunit
[Nicotiana tomentosiformis]
Length = 1392
Score = 120 bits (302), Expect(3) = 2e-37
Identities = 63/75 (84%), Positives = 67/75 (89%)
Frame = +2
Query: 2 EGMSNVFLPGELIGLWRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETTRV 181
+GMSNVF PGELIGL RAER GRALEEAICYR VLLGITRASLNTQSFISEASFQET RV
Sbjct: 1241 DGMSNVFSPGELIGLLRAERMGRALEEAICYRVVLLGITRASLNTQSFISEASFQETARV 1300
Query: 182 LAKAALRGLVERPEG 226
LAKAALRG ++ +G
Sbjct: 1301 LAKAALRGRIDWLKG 1315
Score = 43.9 bits (102), Expect(3) = 2e-37
Identities = 21/29 (72%), Positives = 22/29 (75%)
Frame = +3
Query: 204 DWLKGLKEIVVLGEIIPVGTRFKA*QHSS 290
DWLKGLKE VVLG +IPVGT FK H S
Sbjct: 1311 DWLKGLKENVVLGGVIPVGTGFKGLVHPS 1339
Score = 37.7 bits (86), Expect(3) = 2e-37
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = +1
Query: 262 PDSKHNNIPLETKKRNLFE 318
P +HNNIPLETKK+NLFE
Sbjct: 1338 PSKQHNNIPLETKKKNLFE 1356
>ref|YP_004891590.1| rpoC2 gene product (chloroplast) [Nicotiana undulata]
gi|347453891|gb|AEO95549.1| RNA polymerase beta'' subunit
(chloroplast) [Nicotiana undulata]
gi|347454002|gb|AEO95659.1| RNA polymerase beta'' subunit
[synthetic construct]
Length = 1392
Score = 120 bits (302), Expect(3) = 2e-37
Identities = 63/75 (84%), Positives = 67/75 (89%)
Frame = +2
Query: 2 EGMSNVFLPGELIGLWRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETTRV 181
+GMSNVF PGELIGL RAER GRALEEAICYR VLLGITRASLNTQSFISEASFQET RV
Sbjct: 1241 DGMSNVFSPGELIGLLRAERMGRALEEAICYRVVLLGITRASLNTQSFISEASFQETARV 1300
Query: 182 LAKAALRGLVERPEG 226
LAKAALRG ++ +G
Sbjct: 1301 LAKAALRGRIDWLKG 1315
Score = 43.9 bits (102), Expect(3) = 2e-37
Identities = 21/29 (72%), Positives = 22/29 (75%)
Frame = +3
Query: 204 DWLKGLKEIVVLGEIIPVGTRFKA*QHSS 290
DWLKGLKE VVLG +IPVGT FK H S
Sbjct: 1311 DWLKGLKENVVLGGVIPVGTGFKGLVHPS 1339
Score = 37.7 bits (86), Expect(3) = 2e-37
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = +1
Query: 262 PDSKHNNIPLETKKRNLFE 318
P +HNNIPLETKK+NLFE
Sbjct: 1338 PSKQHNNIPLETKKKNLFE 1356
>sp|Q8S8Y1.1|RPOC2_ATRBE RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|20068321|emb|CAC88034.1| RNA polymerase beta II
subunit [Atropa belladonna]
Length = 1389
Score = 120 bits (302), Expect(3) = 2e-37
Identities = 63/75 (84%), Positives = 67/75 (89%)
Frame = +2
Query: 2 EGMSNVFLPGELIGLWRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETTRV 181
+GMSNVF PGELIGL RAER GRALEEAICYR VLLGITRASLNTQSFISEASFQET RV
Sbjct: 1238 DGMSNVFSPGELIGLLRAERMGRALEEAICYRVVLLGITRASLNTQSFISEASFQETARV 1297
Query: 182 LAKAALRGLVERPEG 226
LAKAALRG ++ +G
Sbjct: 1298 LAKAALRGRIDWLKG 1312
Score = 43.9 bits (102), Expect(3) = 2e-37
Identities = 21/29 (72%), Positives = 22/29 (75%)
Frame = +3
Query: 204 DWLKGLKEIVVLGEIIPVGTRFKA*QHSS 290
DWLKGLKE VVLG +IPVGT FK H S
Sbjct: 1308 DWLKGLKENVVLGGVIPVGTGFKGLVHPS 1336
Score = 37.7 bits (86), Expect(3) = 2e-37
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = +1
Query: 262 PDSKHNNIPLETKKRNLFE 318
P +HNNIPLETKK+NLFE
Sbjct: 1335 PSKQHNNIPLETKKKNLFE 1353
>ref|NP_054486.2| RNA polymerase beta'' subunit [Nicotiana tabacum]
gi|126165910|ref|YP_358662.2| RNA polymerase beta''
subunit [Nicotiana sylvestris]
Length = 1388
Score = 120 bits (302), Expect(3) = 2e-37
Identities = 63/75 (84%), Positives = 67/75 (89%)
Frame = +2
Query: 2 EGMSNVFLPGELIGLWRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETTRV 181
+GMSNVF PGELIGL RAER GRALEEAICYR VLLGITRASLNTQSFISEASFQET RV
Sbjct: 1237 DGMSNVFSPGELIGLLRAERMGRALEEAICYRVVLLGITRASLNTQSFISEASFQETARV 1296
Query: 182 LAKAALRGLVERPEG 226
LAKAALRG ++ +G
Sbjct: 1297 LAKAALRGRIDWLKG 1311
Score = 43.9 bits (102), Expect(3) = 2e-37
Identities = 21/29 (72%), Positives = 22/29 (75%)
Frame = +3
Query: 204 DWLKGLKEIVVLGEIIPVGTRFKA*QHSS 290
DWLKGLKE VVLG +IPVGT FK H S
Sbjct: 1307 DWLKGLKENVVLGGVIPVGTGFKGLVHPS 1335
Score = 37.7 bits (86), Expect(3) = 2e-37
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = +1
Query: 262 PDSKHNNIPLETKKRNLFE 318
P +HNNIPLETKK+NLFE
Sbjct: 1334 PSKQHNNIPLETKKKNLFE 1352
>ref|YP_398849.2| RNA polymerase beta'' subunit [Nicotiana tomentosiformis]
Length = 1388
Score = 120 bits (302), Expect(3) = 2e-37
Identities = 63/75 (84%), Positives = 67/75 (89%)
Frame = +2
Query: 2 EGMSNVFLPGELIGLWRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETTRV 181
+GMSNVF PGELIGL RAER GRALEEAICYR VLLGITRASLNTQSFISEASFQET RV
Sbjct: 1237 DGMSNVFSPGELIGLLRAERMGRALEEAICYRVVLLGITRASLNTQSFISEASFQETARV 1296
Query: 182 LAKAALRGLVERPEG 226
LAKAALRG ++ +G
Sbjct: 1297 LAKAALRGRIDWLKG 1311
Score = 43.9 bits (102), Expect(3) = 2e-37
Identities = 21/29 (72%), Positives = 22/29 (75%)
Frame = +3
Query: 204 DWLKGLKEIVVLGEIIPVGTRFKA*QHSS 290
DWLKGLKE VVLG +IPVGT FK H S
Sbjct: 1307 DWLKGLKENVVLGGVIPVGTGFKGLVHPS 1335
Score = 37.7 bits (86), Expect(3) = 2e-37
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = +1
Query: 262 PDSKHNNIPLETKKRNLFE 318
P +HNNIPLETKK+NLFE
Sbjct: 1334 PSKQHNNIPLETKKKNLFE 1352
>ref|NP_783222.2| RNA polymerase beta'' subunit [Atropa belladonna]
Length = 1385
Score = 120 bits (302), Expect(3) = 2e-37
Identities = 63/75 (84%), Positives = 67/75 (89%)
Frame = +2
Query: 2 EGMSNVFLPGELIGLWRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETTRV 181
+GMSNVF PGELIGL RAER GRALEEAICYR VLLGITRASLNTQSFISEASFQET RV
Sbjct: 1234 DGMSNVFSPGELIGLLRAERMGRALEEAICYRVVLLGITRASLNTQSFISEASFQETARV 1293
Query: 182 LAKAALRGLVERPEG 226
LAKAALRG ++ +G
Sbjct: 1294 LAKAALRGRIDWLKG 1308
Score = 43.9 bits (102), Expect(3) = 2e-37
Identities = 21/29 (72%), Positives = 22/29 (75%)
Frame = +3
Query: 204 DWLKGLKEIVVLGEIIPVGTRFKA*QHSS 290
DWLKGLKE VVLG +IPVGT FK H S
Sbjct: 1304 DWLKGLKENVVLGGVIPVGTGFKGLVHPS 1332
Score = 37.7 bits (86), Expect(3) = 2e-37
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = +1
Query: 262 PDSKHNNIPLETKKRNLFE 318
P +HNNIPLETKK+NLFE
Sbjct: 1331 PSKQHNNIPLETKKKNLFE 1349
>prf||1211235K rpoC-like ORF 862
Length = 862
Score = 120 bits (302), Expect(3) = 2e-37
Identities = 63/75 (84%), Positives = 67/75 (89%)
Frame = +2
Query: 2 EGMSNVFLPGELIGLWRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETTRV 181
+GMSNVF PGELIGL RAER GRALEEAICYR VLLGITRASLNTQSFISEASFQET RV
Sbjct: 711 DGMSNVFSPGELIGLLRAERMGRALEEAICYRVVLLGITRASLNTQSFISEASFQETARV 770
Query: 182 LAKAALRGLVERPEG 226
LAKAALRG ++ +G
Sbjct: 771 LAKAALRGRIDWLKG 785
Score = 43.9 bits (102), Expect(3) = 2e-37
Identities = 21/29 (72%), Positives = 22/29 (75%)
Frame = +3
Query: 204 DWLKGLKEIVVLGEIIPVGTRFKA*QHSS 290
DWLKGLKE VVLG +IPVGT FK H S
Sbjct: 781 DWLKGLKENVVLGGVIPVGTGFKGLVHPS 809
Score = 37.7 bits (86), Expect(3) = 2e-37
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = +1
Query: 262 PDSKHNNIPLETKKRNLFE 318
P +HNNIPLETKK+NLFE
Sbjct: 808 PSKQHNNIPLETKKKNLFE 826
>ref|YP_008081447.1| RNA polymerase beta'' subunit (chloroplast) [Trochodendron
aralioides] gi|157690196|gb|ABV65785.1| RNA polymerase
beta'' subunit (chloroplast) [Trochodendron aralioides]
gi|479279286|gb|AGJ72139.1| RNA polymerase beta'' subunit
(chloroplast) [Trochodendron aralioides]
Length = 1381
Score = 124 bits (312), Expect(3) = 2e-37
Identities = 65/75 (86%), Positives = 69/75 (92%)
Frame = +2
Query: 2 EGMSNVFLPGELIGLWRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETTRV 181
+GMSNVF PGELIGL RAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQET RV
Sbjct: 1238 DGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETARV 1297
Query: 182 LAKAALRGLVERPEG 226
LAKAALRG ++ +G
Sbjct: 1298 LAKAALRGRIDWLKG 1312
Score = 43.9 bits (102), Expect(3) = 2e-37
Identities = 21/29 (72%), Positives = 22/29 (75%)
Frame = +3
Query: 204 DWLKGLKEIVVLGEIIPVGTRFKA*QHSS 290
DWLKGLKE VVLG +IPVGT FK H S
Sbjct: 1308 DWLKGLKENVVLGGMIPVGTGFKGLMHHS 1336
Score = 33.5 bits (75), Expect(3) = 2e-37
Identities = 13/16 (81%), Positives = 16/16 (100%)
Frame = +1
Query: 271 KHNNIPLETKKRNLFE 318
+HNNIPLET+K+NLFE
Sbjct: 1338 QHNNIPLETEKKNLFE 1353
>ref|YP_008081355.1| RNA polymerase beta'' subunit (chloroplast) [Tetracentron sinense]
gi|479279193|gb|AGJ72047.1| RNA polymerase beta'' subunit
(chloroplast) [Tetracentron sinense]
Length = 1378
Score = 124 bits (312), Expect(3) = 2e-37
Identities = 65/75 (86%), Positives = 69/75 (92%)
Frame = +2
Query: 2 EGMSNVFLPGELIGLWRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETTRV 181
+GMSNVF PGELIGL RAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQET RV
Sbjct: 1235 DGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETARV 1294
Query: 182 LAKAALRGLVERPEG 226
LAKAALRG ++ +G
Sbjct: 1295 LAKAALRGRIDWLKG 1309
Score = 43.9 bits (102), Expect(3) = 2e-37
Identities = 21/29 (72%), Positives = 22/29 (75%)
Frame = +3
Query: 204 DWLKGLKEIVVLGEIIPVGTRFKA*QHSS 290
DWLKGLKE VVLG +IPVGT FK H S
Sbjct: 1305 DWLKGLKENVVLGGMIPVGTGFKGLMHHS 1333
Score = 33.5 bits (75), Expect(3) = 2e-37
Identities = 13/16 (81%), Positives = 16/16 (100%)
Frame = +1
Query: 271 KHNNIPLETKKRNLFE 318
+HNNIPLET+K+NLFE
Sbjct: 1335 QHNNIPLETEKKNLFE 1350
>ref|YP_762251.1| RNA polymerase beta' subunit-2 [Morus indica]
gi|122166815|sp|Q09X27.1|RPOC2_MORIN RecName:
Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|78100307|gb|ABB20948.1| RNA polymerase beta' subunit-2
[Morus indica]
Length = 1389
Score = 123 bits (309), Expect(3) = 3e-37
Identities = 62/75 (82%), Positives = 71/75 (94%)
Frame = +2
Query: 2 EGMSNVFLPGELIGLWRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETTRV 181
+GMSNVFLPGELIGL+RAERTGRAL+EAICY+A+LLGIT+ASLNTQSFISEASFQET RV
Sbjct: 1238 DGMSNVFLPGELIGLFRAERTGRALKEAICYQAILLGITKASLNTQSFISEASFQETARV 1297
Query: 182 LAKAALRGLVERPEG 226
LAKAALRG ++ +G
Sbjct: 1298 LAKAALRGRIDWLKG 1312
Score = 43.1 bits (100), Expect(3) = 3e-37
Identities = 21/29 (72%), Positives = 22/29 (75%)
Frame = +3
Query: 204 DWLKGLKEIVVLGEIIPVGTRFKA*QHSS 290
DWLKGLKE VVLG +IPVGT FK H S
Sbjct: 1308 DWLKGLKENVVLGGMIPVGTGFKGLVHRS 1336
Score = 35.0 bits (79), Expect(3) = 3e-37
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = +1
Query: 271 KHNNIPLETKKRNLFE 318
+HNNIPLETKK+NLFE
Sbjct: 1338 QHNNIPLETKKKNLFE 1353
>ref|YP_740555.1| RNA polymerase beta'' subunit [Platanus occidentalis]
gi|122166045|sp|Q09G56.1|RPOC2_PLAOC RecName:
Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|114054374|gb|ABI49768.1| RNA polymerase beta'' subunit
[Platanus occidentalis]
Length = 1387
Score = 125 bits (315), Expect(3) = 3e-37
Identities = 65/75 (86%), Positives = 70/75 (93%)
Frame = +2
Query: 2 EGMSNVFLPGELIGLWRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETTRV 181
+GMSNVF PGELIGL+RAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQET RV
Sbjct: 1236 DGMSNVFSPGELIGLFRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETARV 1295
Query: 182 LAKAALRGLVERPEG 226
LAKAALRG ++ +G
Sbjct: 1296 LAKAALRGRIDWLKG 1310
Score = 43.1 bits (100), Expect(3) = 3e-37
Identities = 21/29 (72%), Positives = 22/29 (75%)
Frame = +3
Query: 204 DWLKGLKEIVVLGEIIPVGTRFKA*QHSS 290
DWLKGLKE VVLG +IPVGT FK H S
Sbjct: 1306 DWLKGLKENVVLGGMIPVGTGFKGLVHRS 1334
Score = 32.7 bits (73), Expect(3) = 3e-37
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = +1
Query: 271 KHNNIPLETKKRNLFE 318
+HNNIPLE KK+NLFE
Sbjct: 1336 EHNNIPLEIKKKNLFE 1351
>gb|EXB81185.1| DNA-directed RNA polymerase subunit beta'' [Morus notabilis]
Length = 226
Score = 123 bits (309), Expect(3) = 3e-37
Identities = 62/75 (82%), Positives = 71/75 (94%)
Frame = +2
Query: 2 EGMSNVFLPGELIGLWRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETTRV 181
+GMSNVFLPGELIGL+RAERTGRAL+EAICY+A+LLGIT+ASLNTQSFISEASFQET RV
Sbjct: 75 DGMSNVFLPGELIGLFRAERTGRALKEAICYQAILLGITKASLNTQSFISEASFQETARV 134
Query: 182 LAKAALRGLVERPEG 226
LAKAALRG ++ +G
Sbjct: 135 LAKAALRGRIDWLKG 149
Score = 43.1 bits (100), Expect(3) = 3e-37
Identities = 21/29 (72%), Positives = 22/29 (75%)
Frame = +3
Query: 204 DWLKGLKEIVVLGEIIPVGTRFKA*QHSS 290
DWLKGLKE VVLG +IPVGT FK H S
Sbjct: 145 DWLKGLKENVVLGGMIPVGTGFKGLVHRS 173
Score = 35.0 bits (79), Expect(3) = 3e-37
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = +1
Query: 271 KHNNIPLETKKRNLFE 318
+HNNIPLETKK+NLFE
Sbjct: 175 QHNNIPLETKKKNLFE 190