BLASTX nr result
ID: Paeonia24_contig00035250
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Paeonia24_contig00035250
(437 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAX68198.1| retrotransposon ribonuclease H [Helianthus annuus] 45 2e-07
emb|CAX68207.1| Copia-like retrotransposon [Helianthus annuus] 44 5e-07
emb|CAX68204.1| retrotransposon ribonuclease H [Helianthus annuus] 44 5e-07
emb|CAX68203.1| retrotransposon ribonuclease H [Helianthus annuus] 44 5e-07
emb|CAX68202.1| retrotransposon ribonuclease H [Helianthus annuus] 44 5e-07
emb|CAX68201.1| retrotransposon ribonuclease H [Helianthus annuus] 44 5e-07
emb|CAX68199.1| retrotransposon ribonuclease H [Helianthus annuu... 44 5e-07
>emb|CAX68198.1| retrotransposon ribonuclease H [Helianthus annuus]
Length = 207
Score = 45.4 bits (106), Expect(2) = 2e-07
Identities = 37/103 (35%), Positives = 45/103 (43%), Gaps = 20/103 (19%)
Frame = +2
Query: 59 SGYVFTLDGGAISWASLACGAISWASKKQTCIT*SM--------------------ILTK 178
SG++FTL GGA+SWAS KKQTCI S +LT
Sbjct: 81 SGWIFTLAGGAVSWAS----------KKQTCIAHSTMEAELIALAAAGKEAEWIRDLLTD 130
Query: 179 ICYWNWSCGPI*FSTFLYTTIAKLHSLEAYNRVYNRKSKHIGL 307
I W+ I T++K AYN VYN S+HIGL
Sbjct: 131 IRLWDVPMPCIPMYCDSEATLSK-----AYNAVYNGGSRHIGL 168
Score = 35.0 bits (79), Expect(2) = 2e-07
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 4/36 (11%)
Frame = +1
Query: 313 DYVKQLISG----VIYVRTINNLADPFM*GLSRELV 408
+YV+QL+ V+YV+T NLADPF L+R+LV
Sbjct: 171 NYVRQLLESGTIKVVYVKTSKNLADPFTKPLTRDLV 206
>emb|CAX68207.1| Copia-like retrotransposon [Helianthus annuus]
Length = 1358
Score = 44.3 bits (103), Expect(2) = 5e-07
Identities = 36/103 (34%), Positives = 45/103 (43%), Gaps = 20/103 (19%)
Frame = +2
Query: 59 SGYVFTLDGGAISWASLACGAISWASKKQTCIT*SM--------------------ILTK 178
SG++FTL GGA+SWAS KKQTCI S +LT
Sbjct: 1221 SGWIFTLAGGAVSWAS----------KKQTCIAHSTMEAELIALAAAGKEAEWIRDLLTD 1270
Query: 179 ICYWNWSCGPI*FSTFLYTTIAKLHSLEAYNRVYNRKSKHIGL 307
I W+ I T++K+ YN VYN S+HIGL
Sbjct: 1271 IRLWDVPMPCIPMYCDSEATLSKV-----YNAVYNGGSRHIGL 1308
Score = 35.0 bits (79), Expect(2) = 5e-07
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 4/36 (11%)
Frame = +1
Query: 313 DYVKQLISG----VIYVRTINNLADPFM*GLSRELV 408
+YV+QL+ V+YV+T NLADPF L+R+LV
Sbjct: 1311 NYVRQLLESGTIKVVYVKTSKNLADPFTKPLTRDLV 1346
>emb|CAX68204.1| retrotransposon ribonuclease H [Helianthus annuus]
Length = 207
Score = 44.3 bits (103), Expect(2) = 5e-07
Identities = 36/103 (34%), Positives = 45/103 (43%), Gaps = 20/103 (19%)
Frame = +2
Query: 59 SGYVFTLDGGAISWASLACGAISWASKKQTCIT*SM--------------------ILTK 178
SG++FTL GGA+SWAS KKQTCI S +LT
Sbjct: 81 SGWIFTLAGGAVSWAS----------KKQTCIAHSTMEAELIALAAAGKEAEWIRDLLTD 130
Query: 179 ICYWNWSCGPI*FSTFLYTTIAKLHSLEAYNRVYNRKSKHIGL 307
I W+ I T++K+ YN VYN S+HIGL
Sbjct: 131 IRLWDVPMPCIPMYCDSEATLSKV-----YNAVYNGGSRHIGL 168
Score = 35.0 bits (79), Expect(2) = 5e-07
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 4/36 (11%)
Frame = +1
Query: 313 DYVKQLISG----VIYVRTINNLADPFM*GLSRELV 408
+YV+QL+ V+YV+T NLADPF L+R+LV
Sbjct: 171 NYVRQLLESGTIKVVYVKTSKNLADPFTKPLTRDLV 206
>emb|CAX68203.1| retrotransposon ribonuclease H [Helianthus annuus]
Length = 207
Score = 44.3 bits (103), Expect(2) = 5e-07
Identities = 36/103 (34%), Positives = 45/103 (43%), Gaps = 20/103 (19%)
Frame = +2
Query: 59 SGYVFTLDGGAISWASLACGAISWASKKQTCIT*SM--------------------ILTK 178
SG++FTL GGA+SWAS KKQTCI S +LT
Sbjct: 81 SGWIFTLAGGAVSWAS----------KKQTCIAHSTMEAELIALAAAGKEAEWIRDLLTD 130
Query: 179 ICYWNWSCGPI*FSTFLYTTIAKLHSLEAYNRVYNRKSKHIGL 307
I W+ I T++K+ YN VYN S+HIGL
Sbjct: 131 IRLWDVPMPCIPMYCDSEATLSKV-----YNAVYNGGSRHIGL 168
Score = 35.0 bits (79), Expect(2) = 5e-07
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 4/36 (11%)
Frame = +1
Query: 313 DYVKQLISG----VIYVRTINNLADPFM*GLSRELV 408
+YV+QL+ V+YV+T NLADPF L+R+LV
Sbjct: 171 NYVRQLLESGTIKVVYVKTSKNLADPFTKPLTRDLV 206
>emb|CAX68202.1| retrotransposon ribonuclease H [Helianthus annuus]
Length = 207
Score = 44.3 bits (103), Expect(2) = 5e-07
Identities = 36/103 (34%), Positives = 45/103 (43%), Gaps = 20/103 (19%)
Frame = +2
Query: 59 SGYVFTLDGGAISWASLACGAISWASKKQTCIT*SM--------------------ILTK 178
SG++FTL GGA+SWAS KKQTCI S +LT
Sbjct: 81 SGWIFTLAGGAVSWAS----------KKQTCIAHSTMEAELIALAAAGKEAEWTRDLLTD 130
Query: 179 ICYWNWSCGPI*FSTFLYTTIAKLHSLEAYNRVYNRKSKHIGL 307
I W+ I T++K+ YN VYN S+HIGL
Sbjct: 131 IRLWDVPMPCIPMYCDSEATLSKV-----YNAVYNGGSRHIGL 168
Score = 35.0 bits (79), Expect(2) = 5e-07
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 4/36 (11%)
Frame = +1
Query: 313 DYVKQLISG----VIYVRTINNLADPFM*GLSRELV 408
+YV+QL+ V+YV+T NLADPF L+R+LV
Sbjct: 171 NYVRQLLESGTIKVVYVKTSKNLADPFTKPLTRDLV 206
>emb|CAX68201.1| retrotransposon ribonuclease H [Helianthus annuus]
Length = 207
Score = 44.3 bits (103), Expect(2) = 5e-07
Identities = 37/105 (35%), Positives = 48/105 (45%), Gaps = 22/105 (20%)
Frame = +2
Query: 59 SGYVFTLDGGAISWASLACGAISWASKKQTCIT*SM--------------------ILTK 178
SG++FTL GGA+SWAS KKQTCI S +LT
Sbjct: 81 SGWIFTLAGGAVSWAS----------KKQTCIAHSTMEAELIALAAAGKEAEWIRDLLTD 130
Query: 179 ICYWN--WSCGPI*FSTFLYTTIAKLHSLEAYNRVYNRKSKHIGL 307
I W+ C P+ + T++K+ YN VYN S+HIGL
Sbjct: 131 IRLWDVPMPCTPMYCDS--EATLSKV-----YNAVYNGGSRHIGL 168
Score = 35.0 bits (79), Expect(2) = 5e-07
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 4/36 (11%)
Frame = +1
Query: 313 DYVKQLISG----VIYVRTINNLADPFM*GLSRELV 408
+YV+QL+ V+YV+T NLADPF L+R+LV
Sbjct: 171 NYVRQLLESGTIKVVYVKTSKNLADPFTKPLTRDLV 206
>emb|CAX68199.1| retrotransposon ribonuclease H [Helianthus annuus]
gi|295799965|emb|CAX68200.1| retrotransposon
ribonuclease H [Helianthus annuus]
gi|295799977|emb|CAX68206.1| retrotransposon
ribonuclease H [Helianthus annuus]
Length = 207
Score = 44.3 bits (103), Expect(2) = 5e-07
Identities = 36/103 (34%), Positives = 45/103 (43%), Gaps = 20/103 (19%)
Frame = +2
Query: 59 SGYVFTLDGGAISWASLACGAISWASKKQTCIT*SM--------------------ILTK 178
SG++FTL GGA+SWAS KKQTCI S +LT
Sbjct: 81 SGWIFTLAGGAVSWAS----------KKQTCIAHSTMEAELIALAAAGKEAEWIRDLLTD 130
Query: 179 ICYWNWSCGPI*FSTFLYTTIAKLHSLEAYNRVYNRKSKHIGL 307
I W+ I T++K+ YN VYN S+HIGL
Sbjct: 131 IRLWDVPMPCIPMYCDSEATLSKV-----YNAVYNGGSRHIGL 168
Score = 35.0 bits (79), Expect(2) = 5e-07
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 4/36 (11%)
Frame = +1
Query: 313 DYVKQLISG----VIYVRTINNLADPFM*GLSRELV 408
+YV+QL+ V+YV+T NLADPF L+R+LV
Sbjct: 171 NYVRQLLESGTIKVVYVKTSKNLADPFTKPLTRDLV 206