BLASTX nr result
ID: Paeonia24_contig00035000
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Paeonia24_contig00035000
(362 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AFB73911.1| polyprotein [Citrus sinensis] 119 3e-41
gb|AFB73912.1| polyprotein [Citrus sinensis] 116 8e-40
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula] 101 3e-33
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula] 100 8e-33
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus] 106 1e-32
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula] 100 1e-32
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula] 99 2e-32
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas] 95 6e-29
gb|ABA96718.1| retrotransposon protein, putative, Ty1-copia subc... 64 2e-15
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group... 62 3e-15
gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subc... 61 2e-14
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc... 59 3e-14
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group... 62 3e-14
gb|AAL31093.1|AC091749_22 putative retrotransposon-related prote... 60 4e-14
gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa... 57 9e-14
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ... 57 3e-13
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 59 8e-13
gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subc... 53 2e-12
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja... 53 2e-12
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 57 3e-12
>gb|AFB73911.1| polyprotein [Citrus sinensis]
Length = 1309
Score = 119 bits (297), Expect(2) = 3e-41
Identities = 54/69 (78%), Positives = 64/69 (92%)
Frame = +2
Query: 149 KILSDQKLLPGFKSVN*PFCEHCVTRKQYRLKFNRSVAQSKCILDLIHYDVWESPDMSLG 328
KILS++KLLPG KSV+ PFCEHCVT KQ+RLKF+RS+A+SKCILDLIH DVWESPD+S+G
Sbjct: 439 KILSERKLLPGLKSVSLPFCEHCVTSKQHRLKFSRSIARSKCILDLIHSDVWESPDISMG 498
Query: 329 GAKYFVSFI 355
GAKY V+FI
Sbjct: 499 GAKYMVTFI 507
Score = 75.5 bits (184), Expect(2) = 3e-41
Identities = 40/54 (74%), Positives = 44/54 (81%)
Frame = +1
Query: 1 VVMKAKKKNGSNLFMLKGETLQEADACVASTSKEEELTMMWHLKLGHMSEDSLR 162
V+MK +K G+NLFMLKGETLQEADACVAS EE TMMWHLKLGHMSE L+
Sbjct: 389 VLMKVEKI-GANLFMLKGETLQEADACVASNG--EESTMMWHLKLGHMSEQGLK 439
>gb|AFB73912.1| polyprotein [Citrus sinensis]
Length = 1309
Score = 116 bits (290), Expect(2) = 8e-40
Identities = 53/69 (76%), Positives = 63/69 (91%)
Frame = +2
Query: 149 KILSDQKLLPGFKSVN*PFCEHCVTRKQYRLKFNRSVAQSKCILDLIHYDVWESPDMSLG 328
KILS++KL PG KSV+ PFCEHCVT KQ+RLKF+RS+A+SKCILDLIH DVWESPD+S+G
Sbjct: 439 KILSERKLPPGLKSVSLPFCEHCVTSKQHRLKFSRSIARSKCILDLIHSDVWESPDISMG 498
Query: 329 GAKYFVSFI 355
GAKY V+FI
Sbjct: 499 GAKYMVTFI 507
Score = 73.6 bits (179), Expect(2) = 8e-40
Identities = 40/54 (74%), Positives = 44/54 (81%)
Frame = +1
Query: 1 VVMKAKKKNGSNLFMLKGETLQEADACVASTSKEEELTMMWHLKLGHMSEDSLR 162
V+MKA+K +NLFMLKGETLQEADACVAS EE TMMWHLKLGHMSE L+
Sbjct: 389 VLMKAEKIC-ANLFMLKGETLQEADACVASNG--EESTMMWHLKLGHMSEQGLK 439
>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 101 bits (251), Expect(2) = 3e-33
Identities = 47/69 (68%), Positives = 57/69 (82%)
Frame = +2
Query: 149 KILSDQKLLPGFKSVN*PFCEHCVTRKQYRLKFNRSVAQSKCILDLIHYDVWESPDMSLG 328
K+L+++ LL G K+VN PFCEHCV KQ+RLKF R +SK ILDLIH DVWESP++SLG
Sbjct: 439 KVLAERNLLHGLKAVNLPFCEHCVISKQHRLKFARVTTRSKHILDLIHSDVWESPEISLG 498
Query: 329 GAKYFVSFI 355
GA+YFVSFI
Sbjct: 499 GARYFVSFI 507
Score = 66.2 bits (160), Expect(2) = 3e-33
Identities = 36/54 (66%), Positives = 44/54 (81%)
Frame = +1
Query: 1 VVMKAKKKNGSNLFMLKGETLQEADACVASTSKEEELTMMWHLKLGHMSEDSLR 162
VVMKA+K SNL+ML G+TLQEADA VA++S +EE TMMWH +LGHMSE L+
Sbjct: 388 VVMKAEKIT-SNLYMLLGDTLQEADASVAASS-QEETTMMWHQRLGHMSERGLK 439
>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 100 bits (249), Expect(2) = 8e-33
Identities = 47/69 (68%), Positives = 56/69 (81%)
Frame = +2
Query: 149 KILSDQKLLPGFKSVN*PFCEHCVTRKQYRLKFNRSVAQSKCILDLIHYDVWESPDMSLG 328
K+L ++ LL G K+VN PFCEHCV KQ+RLKF R +SK ILDLIH DVWESP++SLG
Sbjct: 439 KVLVERNLLHGLKTVNLPFCEHCVISKQHRLKFARVTTRSKHILDLIHSDVWESPELSLG 498
Query: 329 GAKYFVSFI 355
GA+YFVSFI
Sbjct: 499 GARYFVSFI 507
Score = 65.9 bits (159), Expect(2) = 8e-33
Identities = 36/54 (66%), Positives = 43/54 (79%)
Frame = +1
Query: 1 VVMKAKKKNGSNLFMLKGETLQEADACVASTSKEEELTMMWHLKLGHMSEDSLR 162
VVMKA+K SNL+ML G+TLQEADA VA+ S +EE TMMWH +LGHMSE L+
Sbjct: 388 VVMKAEKIT-SNLYMLLGDTLQEADASVAAAS-QEETTMMWHQRLGHMSERGLK 439
>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
Length = 1305
Score = 106 bits (264), Expect(2) = 1e-32
Identities = 48/69 (69%), Positives = 60/69 (86%)
Frame = +2
Query: 149 KILSDQKLLPGFKSVN*PFCEHCVTRKQYRLKFNRSVAQSKCILDLIHYDVWESPDMSLG 328
K+L+++ L+PG KSV+ PFCEHCV KQ+RLKF +S A+SK ILDLIH DVWESP++S+G
Sbjct: 439 KVLAERNLIPGLKSVSLPFCEHCVISKQHRLKFAKSTARSKHILDLIHSDVWESPEVSIG 498
Query: 329 GAKYFVSFI 355
GAKYFVSFI
Sbjct: 499 GAKYFVSFI 507
Score = 59.7 bits (143), Expect(2) = 1e-32
Identities = 34/54 (62%), Positives = 40/54 (74%)
Frame = +1
Query: 1 VVMKAKKKNGSNLFMLKGETLQEADACVASTSKEEELTMMWHLKLGHMSEDSLR 162
VVMKAKK +NL+ML G+T Q ADA VA S +EE TMMWH +LGHMSE L+
Sbjct: 388 VVMKAKKV-AANLYMLLGDTWQMADASVAVGS-QEETTMMWHRRLGHMSERGLK 439
>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 100 bits (248), Expect(2) = 1e-32
Identities = 47/69 (68%), Positives = 56/69 (81%)
Frame = +2
Query: 149 KILSDQKLLPGFKSVN*PFCEHCVTRKQYRLKFNRSVAQSKCILDLIHYDVWESPDMSLG 328
K+L ++ LL G K+VN PFCEHCV KQ+RLKF R +SK ILDLIH DVWESP++SLG
Sbjct: 439 KVLVERNLLHGLKTVNLPFCEHCVMSKQHRLKFARVTTRSKHILDLIHSDVWESPEISLG 498
Query: 329 GAKYFVSFI 355
GA+YFVSFI
Sbjct: 499 GARYFVSFI 507
Score = 65.9 bits (159), Expect(2) = 1e-32
Identities = 36/54 (66%), Positives = 43/54 (79%)
Frame = +1
Query: 1 VVMKAKKKNGSNLFMLKGETLQEADACVASTSKEEELTMMWHLKLGHMSEDSLR 162
VVMKA+K SNL+ML G+TLQEADA VA+ S +EE TMMWH +LGHMSE L+
Sbjct: 388 VVMKAEKIT-SNLYMLLGDTLQEADASVAAAS-QEETTMMWHQRLGHMSERGLK 439
>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 99.4 bits (246), Expect(2) = 2e-32
Identities = 47/69 (68%), Positives = 55/69 (79%)
Frame = +2
Query: 149 KILSDQKLLPGFKSVN*PFCEHCVTRKQYRLKFNRSVAQSKCILDLIHYDVWESPDMSLG 328
K+L ++ LL G K+VN PFCEHCV KQ+RLKF R +SK ILDLIH DVWESP +SLG
Sbjct: 439 KVLVERNLLHGLKTVNLPFCEHCVISKQHRLKFARVTTRSKHILDLIHSDVWESPKLSLG 498
Query: 329 GAKYFVSFI 355
GA+YFVSFI
Sbjct: 499 GARYFVSFI 507
Score = 65.9 bits (159), Expect(2) = 2e-32
Identities = 36/54 (66%), Positives = 43/54 (79%)
Frame = +1
Query: 1 VVMKAKKKNGSNLFMLKGETLQEADACVASTSKEEELTMMWHLKLGHMSEDSLR 162
VVMKA+K SNL+ML G+TLQEADA VA+ S +EE TMMWH +LGHMSE L+
Sbjct: 388 VVMKAEKIT-SNLYMLLGDTLQEADASVAAAS-QEETTMMWHQRLGHMSERGLK 439
>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
Length = 1298
Score = 94.7 bits (234), Expect(2) = 6e-29
Identities = 42/69 (60%), Positives = 55/69 (79%)
Frame = +2
Query: 149 KILSDQKLLPGFKSVN*PFCEHCVTRKQYRLKFNRSVAQSKCILDLIHYDVWESPDMSLG 328
KIL +QKL+PG V+ P CEHC+T KQ+RLKF+ S ++ K +L+L+H DVW++P SLG
Sbjct: 429 KILVEQKLIPGLTKVSLPLCEHCITSKQHRLKFSTSNSRGKVVLELVHSDVWQAPVPSLG 488
Query: 329 GAKYFVSFI 355
GAKYFVSFI
Sbjct: 489 GAKYFVSFI 497
Score = 58.5 bits (140), Expect(2) = 6e-29
Identities = 30/54 (55%), Positives = 41/54 (75%)
Frame = +1
Query: 1 VVMKAKKKNGSNLFMLKGETLQEADACVASTSKEEELTMMWHLKLGHMSEDSLR 162
VVMK +K +NL+MLKGETLQEA+A VA+ S + T++WH KLGHMS+ ++
Sbjct: 379 VVMKGEKI-AANLYMLKGETLQEAEASVAACSPDS--TLLWHQKLGHMSDQGMK 429
>gb|ABA96718.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1131
Score = 63.5 bits (153), Expect(2) = 2e-15
Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Frame = +2
Query: 155 LSDQKLLPGFKSVN*PFCEHCVTRKQYRLKFNRSVAQSKCILDLIHYDVW-ESPDMSLGG 331
L + LL G+ N FCEHCV K R+KFN SV ++K ILD +H D+W S SLGG
Sbjct: 394 LMKRNLLDGYTQGNMKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGG 453
Query: 332 AKYFVSFI 355
A+Y ++ I
Sbjct: 454 ARYMLTII 461
Score = 43.9 bits (102), Expect(2) = 2e-15
Identities = 18/42 (42%), Positives = 27/42 (64%)
Frame = +1
Query: 25 NGSNLFMLKGETLQEADACVASTSKEEELTMMWHLKLGHMSE 150
N +NL++L+G TL + A + E T +WH++LGHMSE
Sbjct: 347 NSANLYVLRGSTLHGSVTAAAVSKDEPSKTNLWHMRLGHMSE 388
>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53370655|gb|AAU89150.1| integrase core domain
containing protein [Oryza sativa Japonica Group]
gi|108710286|gb|ABF98081.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1322
Score = 61.6 bits (148), Expect(2) = 3e-15
Identities = 33/68 (48%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Frame = +2
Query: 155 LSDQKLLPGFKSVN*PFCEHCVTRKQYRLKFNRSVAQSKCILDLIHYDVW-ESPDMSLGG 331
L + LL G N FCEHCV K R+KFN SV ++K ILD +H D+W S SLGG
Sbjct: 444 LMKRNLLDGCTQGNMKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGG 503
Query: 332 AKYFVSFI 355
A+Y ++ I
Sbjct: 504 ARYMLTII 511
Score = 45.4 bits (106), Expect(2) = 3e-15
Identities = 19/42 (45%), Positives = 27/42 (64%)
Frame = +1
Query: 25 NGSNLFMLKGETLQEADACVASTSKEEELTMMWHLKLGHMSE 150
N +NL++L+G TL + A T E T +WH++LGHMSE
Sbjct: 397 NSANLYVLRGSTLHGSVTAAAVTKDEPSKTNLWHMRLGHMSE 438
>gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1156
Score = 60.8 bits (146), Expect(2) = 2e-14
Identities = 34/68 (50%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = +2
Query: 155 LSDQKLLPGFKSVN*PFCEHCVTRKQYRLKFNRSVAQSKCILDLIHYDVW-ESPDMSLGG 331
L + LL G N FCEHCV K R+KFN SV +SK ILD +H D+W S SLGG
Sbjct: 384 LMKRNLLDGCTQGNMKFCEHCVFGKHKRVKFNTSVHRSKGILDYVHADLWGPSRKPSLGG 443
Query: 332 AKYFVSFI 355
A Y ++ I
Sbjct: 444 ACYMLTII 451
Score = 43.9 bits (102), Expect(2) = 2e-14
Identities = 18/42 (42%), Positives = 27/42 (64%)
Frame = +1
Query: 25 NGSNLFMLKGETLQEADACVASTSKEEELTMMWHLKLGHMSE 150
N +NL++L+G TL + A + E T +WH++LGHMSE
Sbjct: 337 NSTNLYVLRGSTLHGSITAAAVSKDEPSKTNLWHMRLGHMSE 378
>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1278
Score = 58.5 bits (140), Expect(2) = 3e-14
Identities = 32/68 (47%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = +2
Query: 155 LSDQKLLPGFKSVN*PFCEHCVTRKQYRLKFNRSVAQSKCILDLIHYDVW-ESPDMSLGG 331
L + LL G N FCE CV K R+KFN SV ++K ILD +H D+W S SLGG
Sbjct: 444 LMKRNLLDGCTQGNMKFCERCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGG 503
Query: 332 AKYFVSFI 355
A+Y ++ I
Sbjct: 504 ARYMLTII 511
Score = 45.4 bits (106), Expect(2) = 3e-14
Identities = 19/42 (45%), Positives = 27/42 (64%)
Frame = +1
Query: 25 NGSNLFMLKGETLQEADACVASTSKEEELTMMWHLKLGHMSE 150
N +NL++L+G TL + A T E T +WH++LGHMSE
Sbjct: 397 NSANLYVLRGSTLHGSVTAAAVTKDEPNKTNLWHMRLGHMSE 438
>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
gi|48475101|gb|AAT44170.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1175
Score = 61.6 bits (148), Expect(2) = 3e-14
Identities = 33/68 (48%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Frame = +2
Query: 155 LSDQKLLPGFKSVN*PFCEHCVTRKQYRLKFNRSVAQSKCILDLIHYDVW-ESPDMSLGG 331
L + LL G N FCEHCV K R+KFN SV ++K ILD +H D+W S SLGG
Sbjct: 339 LMKRNLLDGCTQGNMKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGG 398
Query: 332 AKYFVSFI 355
A+Y ++ I
Sbjct: 399 ARYMLTII 406
Score = 42.4 bits (98), Expect(2) = 3e-14
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = +1
Query: 25 NGSNLFMLKGETLQEADACVASTSKEEELTMMWHLKLGHMSE 150
N +NL++L+G TL + E T MWH++LGHMSE
Sbjct: 292 NSANLYVLRGSTLHGYVTAAVVSKDEPSKTNMWHMRLGHMSE 333
>gb|AAL31093.1|AC091749_22 putative retrotransposon-related protein [Oryza sativa Japonica
Group] gi|22655747|gb|AAN04164.1| Putative
retrotransposon protein [Oryza sativa Japonica Group]
gi|31431214|gb|AAP53029.1| retrotransposon protein,
putative, Ty1-copia subclass, expressed [Oryza sativa
Japonica Group]
Length = 1229
Score = 59.7 bits (143), Expect(2) = 4e-14
Identities = 33/68 (48%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = +2
Query: 155 LSDQKLLPGFKSVN*PFCEHCVTRKQYRLKFNRSVAQSKCILDLIHYDVW-ESPDMSLGG 331
L + LL G N FCEHCV K R+KFN SV ++K ILD +H D+W S SLGG
Sbjct: 441 LMKRNLLDGCTQGNMKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGG 500
Query: 332 AKYFVSFI 355
A Y ++ I
Sbjct: 501 ACYMLTII 508
Score = 43.5 bits (101), Expect(2) = 4e-14
Identities = 18/42 (42%), Positives = 27/42 (64%)
Frame = +1
Query: 25 NGSNLFMLKGETLQEADACVASTSKEEELTMMWHLKLGHMSE 150
N +NL++L+G TL + A + E T +WH++LGHMSE
Sbjct: 394 NSANLYVLRGSTLHGSLTAAAVSKDEPSKTNLWHMRLGHMSE 435
>gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa Japonica Group]
gi|18542925|gb|AAL75759.1| Putative pol polyprotein
[Oryza sativa Japonica Group] gi|31429763|gb|AAP51772.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1005
Score = 56.6 bits (135), Expect(2) = 9e-14
Identities = 32/68 (47%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Frame = +2
Query: 155 LSDQKLLPGFKSVN*PFCEHCVTRKQYRLKFNRSVAQSKCILDLIHYDVW-ESPDMSLGG 331
L + LL G N FCEHCV K +KFN SV + K ILD +H D+W S SLGG
Sbjct: 181 LMKRNLLDGCTQGNMKFCEHCVFGKHKWVKFNISVHRIKGILDYVHADLWGPSHKPSLGG 240
Query: 332 AKYFVSFI 355
A+Y ++ I
Sbjct: 241 ARYMLTII 248
Score = 45.4 bits (106), Expect(2) = 9e-14
Identities = 19/42 (45%), Positives = 27/42 (64%)
Frame = +1
Query: 25 NGSNLFMLKGETLQEADACVASTSKEEELTMMWHLKLGHMSE 150
N +NL++L+G TL + A T E T +WH++LGHMSE
Sbjct: 134 NSANLYVLRGSTLHGSVTAAAVTKDEPSKTNLWHMRLGHMSE 175
>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
gi|108708632|gb|ABF96427.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1326
Score = 57.4 bits (137), Expect(2) = 3e-13
Identities = 31/68 (45%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Frame = +2
Query: 155 LSDQKLLPGFKSVN*PFCEHCVTRKQYRLKFNRSVAQSKCILDLIHYDVW-ESPDMSLGG 331
L + LL G FCEHCV K R+KFN SV ++K ILD +H D+W S LGG
Sbjct: 444 LMKRNLLDGCTQGKMKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHTDLWGPSRKAYLGG 503
Query: 332 AKYFVSFI 355
A+Y ++ I
Sbjct: 504 ARYMLTII 511
Score = 42.7 bits (99), Expect(2) = 3e-13
Identities = 18/42 (42%), Positives = 27/42 (64%)
Frame = +1
Query: 25 NGSNLFMLKGETLQEADACVASTSKEEELTMMWHLKLGHMSE 150
N +NL++L+G TL + A + E T +WH++LGHMSE
Sbjct: 397 NSANLYVLRGSTLHGSVTAAAVSKDEPIKTNLWHMRLGHMSE 438
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 58.9 bits (141), Expect(2) = 8e-13
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = +2
Query: 155 LSDQKLLPGFKSVN*PFCEHCVTRKQYRLKFNRSVAQSKCILDLIHYDVW-ESPDMSLGG 331
L + LL G+ S FCEHC+ K R++FN SV +K LD +H D+W S SLGG
Sbjct: 445 LMKRNLLKGYTSSKIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGG 504
Query: 332 AKYFVSFI 355
A+Y ++ I
Sbjct: 505 ARYMLTII 512
Score = 40.0 bits (92), Expect(2) = 8e-13
Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Frame = +1
Query: 25 NGSNLFMLKGETLQEADACVAS-TSKEEELTMMWHLKLGHMS 147
N + L++L+G TL +D+ A+ T+ E T +WH++LGHMS
Sbjct: 397 NSAKLYVLRGCTLPGSDSAAAAVTNDEPSKTNLWHMRLGHMS 438
>gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1262
Score = 53.1 bits (126), Expect(2) = 2e-12
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +2
Query: 155 LSDQKLLPGFKSVN*PFCEHCVTRKQYRLKFNRSVAQSKCILDLIHYDVW-ESPDMSLGG 331
LS + LL G FCEHC+ K R+KFN S ++ ILD +H D+W + S GG
Sbjct: 466 LSKRGLLDGQSIKKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGG 525
Query: 332 AKYFVSFI 355
A+Y ++ +
Sbjct: 526 ARYMMTIV 533
Score = 44.3 bits (103), Expect(2) = 2e-12
Identities = 23/53 (43%), Positives = 34/53 (64%)
Frame = +1
Query: 1 VVMKAKKKNGSNLFMLKGETLQEADACVASTSKEEELTMMWHLKLGHMSEDSL 159
VVMKA K+ +NL+ L+G T+ A V+ + + T +WH++LGHMSE L
Sbjct: 412 VVMKADIKS-ANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGL 463
>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
gi|20087076|gb|AAM10749.1|AC112514_2 Putative
retroelement [Oryza sativa Japonica Group]
Length = 1225
Score = 53.1 bits (126), Expect(2) = 2e-12
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +2
Query: 155 LSDQKLLPGFKSVN*PFCEHCVTRKQYRLKFNRSVAQSKCILDLIHYDVW-ESPDMSLGG 331
LS + LL G FCEHC+ K R+KFN S ++ ILD +H D+W + S GG
Sbjct: 412 LSKRGLLDGQSIKKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGG 471
Query: 332 AKYFVSFI 355
A+Y ++ +
Sbjct: 472 ARYMMTIV 479
Score = 44.3 bits (103), Expect(2) = 2e-12
Identities = 23/53 (43%), Positives = 34/53 (64%)
Frame = +1
Query: 1 VVMKAKKKNGSNLFMLKGETLQEADACVASTSKEEELTMMWHLKLGHMSEDSL 159
VVMKA K+ +NL+ L+G T+ A V+ + + T +WH++LGHMSE L
Sbjct: 358 VVMKADIKS-ANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGL 409
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 57.0 bits (136), Expect(2) = 3e-12
Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Frame = +2
Query: 155 LSDQKLLPGFKSVN*PFCEHCVTRKQYRLKFNRSVAQSKCILDLIHYDVW-ESPDMSLGG 331
L + LL G S FCEHC+ K R++FN SV +K LD +H D+W S SLGG
Sbjct: 443 LMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGG 502
Query: 332 AKYFVSFI 355
A+Y ++ I
Sbjct: 503 ARYMLTII 510
Score = 40.0 bits (92), Expect(2) = 3e-12
Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Frame = +1
Query: 25 NGSNLFMLKGETLQEADACVAS-TSKEEELTMMWHLKLGHMS 147
N + L++L+G TL +D+ A+ T+ E T +WH++LGHMS
Sbjct: 395 NSAKLYVLRGCTLTGSDSAAAAITNDEPSKTNLWHMRLGHMS 436