BLASTX nr result
ID: Paeonia24_contig00025229
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Paeonia24_contig00025229
(713 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 325 7e-87
emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera] 320 3e-85
ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-... 308 2e-81
ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D sub... 302 6e-80
emb|CBI34757.3| unnamed protein product [Vitis vinifera] 281 2e-73
ref|XP_007210915.1| hypothetical protein PRUPE_ppa000278mg [Prun... 261 1e-67
ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricin... 249 6e-64
ref|XP_004298730.1| PREDICTED: DNA-directed RNA polymerase D sub... 246 5e-63
ref|XP_004511611.1| PREDICTED: DNA-directed RNA polymerase D sub... 245 1e-62
ref|XP_004511607.1| PREDICTED: DNA-directed RNA polymerase D sub... 245 1e-62
ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Me... 236 7e-60
ref|XP_006573756.1| PREDICTED: DNA-directed RNA polymerase IV su... 231 1e-58
ref|XP_006573755.1| PREDICTED: DNA-directed RNA polymerase IV su... 231 1e-58
ref|XP_006573754.1| PREDICTED: DNA-directed RNA polymerase IV su... 231 1e-58
ref|XP_007158454.1| hypothetical protein PHAVU_002G153700g [Phas... 231 1e-58
ref|XP_007158453.1| hypothetical protein PHAVU_002G153700g [Phas... 231 1e-58
ref|XP_006590533.1| PREDICTED: DNA-directed RNA polymerase IV su... 223 4e-56
ref|XP_006440521.1| hypothetical protein CICLE_v10018489mg [Citr... 223 5e-56
ref|XP_006477376.1| PREDICTED: DNA-directed RNA polymerase IV su... 220 3e-55
ref|XP_006477375.1| PREDICTED: DNA-directed RNA polymerase IV su... 220 3e-55
>ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D
subunit 1-like [Vitis vinifera]
Length = 1560
Score = 325 bits (834), Expect = 7e-87
Identities = 161/237 (67%), Positives = 192/237 (81%)
Frame = -3
Query: 711 EVVQILNKICPGCKSIRQDIRLKAANSTNKHHRPKGCKYCSGDPRVWYPTMKFKVSSNQD 532
EVVQILNKICPGCKS RQ +K A+S ++ R KGCKYC+ + WYPTMKFKVSS +D
Sbjct: 122 EVVQILNKICPGCKSTRQGQWVKGADSGSRRLRSKGCKYCAANSNDWYPTMKFKVSS-KD 180
Query: 531 VFRKTAIIVEVNEKLPKKFRNRSLKDVLPSDFWDFIPKDAHQEGSYSTLNRRVLSYAQVH 352
+FRKTAIIVE+NEKLPKK + +S + VLP D+WDFIPKD QE + NRRVLS+AQVH
Sbjct: 181 LFRKTAIIVEMNEKLPKKLQKKSFRPVLPLDYWDFIPKDPQQEENCLNPNRRVLSHAQVH 240
Query: 351 YLLKDVDLRFIEEFVSRTDSLFLNSFLVTPNCHRITEVTHAFSNGQRLMFDERTRAYRKL 172
YLLKD+D FI+EFVSR DS FLN VTPN HR+TE+THA SNGQ L+FD+ +RAY+KL
Sbjct: 241 YLLKDIDPGFIKEFVSRMDSFFLNCLPVTPNNHRVTEITHALSNGQTLIFDQHSRAYKKL 300
Query: 171 VDFRGMANELGSRVLECLKLSKLISEKPSTTDSSSNVSGLKWMKEVVLGKRTDHSFR 1
VDFRG ANEL RVL+CLK SKL SEK ++ DS+S +SGLKW+KEV+LGKRT+HSFR
Sbjct: 301 VDFRGTANELSCRVLDCLKTSKLRSEKSTSKDSASKMSGLKWIKEVLLGKRTNHSFR 357
>emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]
Length = 1393
Score = 320 bits (820), Expect = 3e-85
Identities = 161/240 (67%), Positives = 192/240 (80%), Gaps = 3/240 (1%)
Frame = -3
Query: 711 EVVQILNKICPGCKSIRQDIRLKAANSTNKHHRPKGCKYCSGDPRVWYPTMKFKVSSNQD 532
EVVQILNKICPGCKS RQ +K A+S ++ R KGCKYC+ + WYPTMKFKVSS +D
Sbjct: 89 EVVQILNKICPGCKSTRQGQWVKGADSGSRRLRSKGCKYCAANSNDWYPTMKFKVSS-KD 147
Query: 531 VFRKTAIIVEVNEKLPKKFRNRSLKDVLPSDFWDFIPKDAHQEGSYSTLNRRVLSYAQVH 352
+FRKTAIIVE+NEKLPKK + +S + VLP D+WDFIPKD QE + NRRVLS+AQVH
Sbjct: 148 LFRKTAIIVEMNEKLPKKLQKKSFRPVLPLDYWDFIPKDPQQEENCLNPNRRVLSHAQVH 207
Query: 351 YLLKDVDLRFIEEFVSRTDSLFLNSFLVTPNCHRITEVTHAFSNGQRLMFDERTRAYRKL 172
YLLKD+D FI+EFVSR DS FLN VTPN HR+TE+THA SNGQ L+FD+ +RAY+KL
Sbjct: 208 YLLKDIDPGFIKEFVSRMDSFFLNCLPVTPNNHRVTEITHALSNGQTLIFDQHSRAYKKL 267
Query: 171 VDFRGMANELGSRVLECLKLSK---LISEKPSTTDSSSNVSGLKWMKEVVLGKRTDHSFR 1
VDFRG ANEL RVL+CLK SK L SEK ++ DS+S +SGLKW+KEV+LGKRT+HSFR
Sbjct: 268 VDFRGTANELSCRVLDCLKTSKASNLRSEKSTSKDSASKMSGLKWIKEVLLGKRTNHSFR 327
>ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-B, putative [Theobroma
cacao] gi|508777356|gb|EOY24612.1| DNA-directed RNA
polymerase II subunit RPB1-B, putative [Theobroma cacao]
Length = 1484
Score = 308 bits (788), Expect = 2e-81
Identities = 157/249 (63%), Positives = 189/249 (75%), Gaps = 12/249 (4%)
Frame = -3
Query: 711 EVVQILNKICPGCKSIRQDIRLKAANSTNKHHRPKGCKYCSGDPRVWYPTMKFKVSSNQD 532
EVVQILNKICPGCKS+R+D+R+K ANS +K ++ KGCKYC G+ WYP M FK+SS +D
Sbjct: 92 EVVQILNKICPGCKSVRKDLRIKGANSVSKVNQRKGCKYCVGNSIDWYPPMNFKISS-KD 150
Query: 531 VFRKTAIIVEVNEKLPKKFRNRSLKDVLPSDFWDFIPKDAHQEGSYSTLNRRVLSYAQVH 352
+FRK+AIIVEV+EK K R R K LPSD+WDFIPKD QE S NRRVLS++QV
Sbjct: 151 LFRKSAIIVEVSEKSSMKVRKRG-KQALPSDYWDFIPKDEQQEESLIRPNRRVLSHSQVR 209
Query: 351 YLLKDVDLRFIEEFVSRTDSLFLNSFLVTPNCHRITEVTHAFSNGQRLMFDERTRAYRKL 172
YLLKDVD FI++FV DS+FLN F VTPN HR+TE+ HA SNGQRL+FD+RTR Y+KL
Sbjct: 210 YLLKDVDPEFIKKFVLSMDSIFLNCFPVTPNSHRVTEIMHASSNGQRLIFDQRTRVYKKL 269
Query: 171 VDFRGMANELGSRVLECLKLSKLISEKPS------------TTDSSSNVSGLKWMKEVVL 28
DFRG+ANEL S VLECLK+SKL EKPS DS+SN+SGL++MK+V+L
Sbjct: 270 ADFRGIANELSSHVLECLKISKLHLEKPSNEESALVLAQKRNKDSASNMSGLRYMKDVIL 329
Query: 27 GKRTDHSFR 1
GKR DH FR
Sbjct: 330 GKRNDHCFR 338
>ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Cucumis
sativus] gi|449494342|ref|XP_004159519.1| PREDICTED: LOW
QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
1-like [Cucumis sativus]
Length = 1469
Score = 302 bits (774), Expect = 6e-80
Identities = 143/249 (57%), Positives = 191/249 (76%), Gaps = 12/249 (4%)
Frame = -3
Query: 711 EVVQILNKICPGCKSIRQDIRLKAANSTNKHHRPKGCKYCSGDPRVWYPTMKFKVSSNQD 532
EV Q+LNK+CPGCKS+RQ++ K + T+ ++RPKGC+YC G + WYP M+FK+S+ D
Sbjct: 89 EVAQVLNKVCPGCKSVRQELWGKVEDPTSDYNRPKGCRYCFGSLKDWYPPMRFKLSTT-D 147
Query: 531 VFRKTAIIVEVNEKLPKKFRNRSLKDVLPSDFWDFIPKDAHQEGSYSTLNRRVLSYAQVH 352
+F+K+ I+VEV E + KK++ R K LPSD+WDFIPKD QE SY NR++L++AQVH
Sbjct: 148 MFKKSMIMVEVKENMSKKYQKRVAKGGLPSDYWDFIPKDEQQEESYCRPNRKILTHAQVH 207
Query: 351 YLLKDVDLRFIEEFVSRTDSLFLNSFLVTPNCHRITEVTHAFSNGQRLMFDERTRAYRKL 172
YLLKD+D +F+++FV DSLFLNSF VTPN HR+TE+ H+FSNGQRL+FDERTRAY+K+
Sbjct: 208 YLLKDIDPKFLKKFVPAIDSLFLNSFPVTPNSHRVTEMAHSFSNGQRLIFDERTRAYKKV 267
Query: 171 VDFRGMANELGSRVLECLKLSKLISE------------KPSTTDSSSNVSGLKWMKEVVL 28
VDFRG ANELGSRVL+CLK+SK I + D++++ SGL+W+K+VVL
Sbjct: 268 VDFRGTANELGSRVLDCLKISKAIYNIFVFCLNHVNYYQKKIKDTATSSSGLRWIKDVVL 327
Query: 27 GKRTDHSFR 1
GKR+DH FR
Sbjct: 328 GKRSDHCFR 336
>emb|CBI34757.3| unnamed protein product [Vitis vinifera]
Length = 1359
Score = 281 bits (718), Expect = 2e-73
Identities = 146/237 (61%), Positives = 173/237 (72%)
Frame = -3
Query: 711 EVVQILNKICPGCKSIRQDIRLKAANSTNKHHRPKGCKYCSGDPRVWYPTMKFKVSSNQD 532
EVVQILNKICPGCKS RQ +K + R KGCKYC+ + WYPTMKFKVSS +D
Sbjct: 89 EVVQILNKICPGCKSTRQGQWVKV-----RRLRSKGCKYCAANSNDWYPTMKFKVSS-KD 142
Query: 531 VFRKTAIIVEVNEKLPKKFRNRSLKDVLPSDFWDFIPKDAHQEGSYSTLNRRVLSYAQVH 352
+FRKTAIIVE+NEKLPKK + +S + VLP D+WDFIPKD QE + NRRVLS+AQVH
Sbjct: 143 LFRKTAIIVEMNEKLPKKLQKKSFRPVLPLDYWDFIPKDPQQEENCLNPNRRVLSHAQVH 202
Query: 351 YLLKDVDLRFIEEFVSRTDSLFLNSFLVTPNCHRITEVTHAFSNGQRLMFDERTRAYRKL 172
YLLKD+D FI+EFVSR DS FLN VTPN HR+TE+THA SNGQ L+FD+ +RAY+KL
Sbjct: 203 YLLKDIDPGFIKEFVSRMDSFFLNCLPVTPNNHRVTEITHALSNGQTLIFDQHSRAYKKL 262
Query: 171 VDFRGMANELGSRVLECLKLSKLISEKPSTTDSSSNVSGLKWMKEVVLGKRTDHSFR 1
VDFRG ANEL + S+S +SGLKW+KEV+LGKRT+HSFR
Sbjct: 263 VDFRGTANEL-------------------SCHSASKMSGLKWIKEVLLGKRTNHSFR 300
>ref|XP_007210915.1| hypothetical protein PRUPE_ppa000278mg [Prunus persica]
gi|462406650|gb|EMJ12114.1| hypothetical protein
PRUPE_ppa000278mg [Prunus persica]
Length = 1356
Score = 261 bits (668), Expect = 1e-67
Identities = 138/244 (56%), Positives = 170/244 (69%), Gaps = 7/244 (2%)
Frame = -3
Query: 711 EVVQILNKICPGCKSIRQDIRLKAANSTNK-------HHRPKGCKYCSGDPRVWYPTMKF 553
EV QILNKICPGCKSIRQ++R K +N T + H + KGCKYC G + YP MKF
Sbjct: 89 EVTQILNKICPGCKSIRQNLRAKVSNRTLRGAGSVIGHRKLKGCKYCIGSS-INYPRMKF 147
Query: 552 KVSSNQDVFRKTAIIVEVNEKLPKKFRNRSLKDVLPSDFWDFIPKDAHQEGSYSTLNRRV 373
KVS+ +++F+++AII E N +LP+D+WDFIPKDA Q+ S N+RV
Sbjct: 148 KVST-RELFKRSAIIAEAN-------------GILPADYWDFIPKDAQQDESCMKPNKRV 193
Query: 372 LSYAQVHYLLKDVDLRFIEEFVSRTDSLFLNSFLVTPNCHRITEVTHAFSNGQRLMFDER 193
LS+AQVHYLLKDVD +FIE+ V +T+SL + SFLVTPNCHR+TEV H+FSNGQRLMFDER
Sbjct: 194 LSHAQVHYLLKDVDTKFIEKIVPKTNSLSMGSFLVTPNCHRVTEVMHSFSNGQRLMFDER 253
Query: 192 TRAYRKLVDFRGMANELGSRVLECLKLSKLISEKPSTTDSSSNVSGLKWMKEVVLGKRTD 13
TRAYRKLVDF+G+ANELGS S SGL+W+K+VVLGKR+D
Sbjct: 254 TRAYRKLVDFKGVANELGSH-------------------DPSKTSGLRWIKDVVLGKRSD 294
Query: 12 HSFR 1
H FR
Sbjct: 295 HCFR 298
>ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricinus communis]
gi|223549595|gb|EEF51083.1| DNA-directed RNA polymerase,
putative [Ricinus communis]
Length = 1475
Score = 249 bits (636), Expect = 6e-64
Identities = 129/248 (52%), Positives = 171/248 (68%), Gaps = 11/248 (4%)
Frame = -3
Query: 711 EVVQILNKICPGCKSIRQDIRLKAANSTNKHHRPKGCKYCSGDPRVWYPTMKFKVSSNQD 532
EVV+ILN++CP CKSIR++ +++ N N C WYP MKF VSS ++
Sbjct: 90 EVVRILNQVCPKCKSIRKESKVRCLNHLNPKLPVLLILLC------WYPAMKFSVSS-EE 142
Query: 531 VFRKTAIIVEVNEKLPKKFRNRSLKDVLPSDFWDFIPKDAHQEGSYSTLNRRVLSYAQVH 352
+FRK II + +E+ K + R K L +D+WD IPKD QE + + N+RVLS+AQV
Sbjct: 143 IFRKNVIIAKFSERPTNKSQKRGFKKKLAADYWDIIPKDEQQEENITRPNQRVLSHAQVI 202
Query: 351 YLLKDVDLRFIEEFVSRTDSLFLNSFLVTPNCHRITEVTHAFSNGQRLMFDERTRAYRKL 172
+LL+++D FI +FV + DS+FLN F VTPNCHR+TEVTHAFSNGQRL+FD+RTRAY+K+
Sbjct: 203 HLLENIDPNFIRKFVLKRDSIFLNCFSVTPNCHRVTEVTHAFSNGQRLVFDDRTRAYKKM 262
Query: 171 VDFRGMANELGSRVLECLKLSKLISEKP-----------STTDSSSNVSGLKWMKEVVLG 25
VDFRG+A EL RVL+CLK SK+ +K DSSS+ SGL+W+K+VVLG
Sbjct: 263 VDFRGIAKELSFRVLDCLKTSKINPDKSVNNDDYMALQRKMNDSSSSSSGLRWIKDVVLG 322
Query: 24 KRTDHSFR 1
KR D+SFR
Sbjct: 323 KRNDNSFR 330
>ref|XP_004298730.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Fragaria
vesca subsp. vesca]
Length = 1438
Score = 246 bits (628), Expect = 5e-63
Identities = 134/250 (53%), Positives = 169/250 (67%), Gaps = 13/250 (5%)
Frame = -3
Query: 711 EVVQILNKICPGCKSIRQDIRLKAANSTNKHHRPKGCKYC---SGDPRVWYPTMKFKVSS 541
EV ILNKICP CK+I+Q +R+K + KGC+YC S D YP M+FKVSS
Sbjct: 89 EVSLILNKICPACKAIKQGVRVKGSER-------KGCRYCFVSSSD----YPRMRFKVSS 137
Query: 540 NQDVFRKTAIIVEVNEKLPKKFRNRSLKDVLPSDFWDFIPKDAHQEGSYSTLNRRVLSYA 361
+++FR++ IIVE +LP D+WDFIPKD + + + +R+VLS+A
Sbjct: 138 -RELFRRSTIIVEAAGELPP-------------DYWDFIPKDPQHDETNTNPHRKVLSHA 183
Query: 360 QVHYLLKDVDLRFIEEFVSRTDSLFLNSFLVTPNCHRITEVTHAFSNGQRLMFDERTRAY 181
QVH+LL DVD FI +FV T SL L+ FLVTPNCHR+TEV ++F+NGQ LMFD+RTRAY
Sbjct: 184 QVHFLLSDVDSNFITKFVPTTSSLSLDCFLVTPNCHRVTEVMYSFNNGQSLMFDDRTRAY 243
Query: 180 RKLVDFRGMANELGSRVLECLKLSKLISEK----------PSTTDSSSNVSGLKWMKEVV 31
RKLVDFRG ANELGSRVL+CLK+SK+ EK DS S SGL+W+K+VV
Sbjct: 244 RKLVDFRGTANELGSRVLDCLKISKINKEKTGRDSISVEQQKIKDSPSRTSGLRWIKDVV 303
Query: 30 LGKRTDHSFR 1
LGKR+DH FR
Sbjct: 304 LGKRSDHCFR 313
>ref|XP_004511611.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X5
[Cicer arietinum]
Length = 1474
Score = 245 bits (625), Expect = 1e-62
Identities = 135/248 (54%), Positives = 171/248 (68%), Gaps = 11/248 (4%)
Frame = -3
Query: 711 EVVQILNKICPGCKSIRQDIRLKAANSTNKHHRPKGCKYCSGDPRVWYPTMKFKVSSNQD 532
E+ +ILNKICP CKSIR+++R+K S ++PKGCKYC G+ YPTMKF+VSSN D
Sbjct: 90 EIAEILNKICPACKSIRRELRIKRVKSLLGFNQPKGCKYC-GNGMGRYPTMKFRVSSN-D 147
Query: 531 VFRKTAIIVEVNEKLPKKFRNRSLKDVLPSDFWDFIPKDAHQEGSYSTLNRRVLSYAQVH 352
FR+TAIIVEVN+ KK RN L LP+D+WDFI DA QE +++ NR VLS QV
Sbjct: 148 FFRRTAIIVEVNDVALKKKRN--LGRGLPADYWDFILGDAQQEENHA--NRMVLSPVQVE 203
Query: 351 YLLKDVDLRFIEEFVSRTDSLFLNSFLVTPNCHRITEVTHAFSNGQRLMFDERTRAYRKL 172
+L VD FI++++ R D + L+ FLV PNCHR+TEV H S G L FD RTRA +KL
Sbjct: 204 NILSGVDSNFIKKYIPRMDLVALSCFLVAPNCHRVTEVPHRLSGGYPLSFDNRTRACKKL 263
Query: 171 VDFRGMANELGSRVLECLKLSKLISEK-PSTT----------DSSSNVSGLKWMKEVVLG 25
VDFRG ANEL SRVL+CL+ SK+ +K PS +++ N SGL+WMK++VLG
Sbjct: 264 VDFRGTANELSSRVLDCLRFSKINPDKTPSNVFTEIQLRKVGENACNSSGLRWMKDIVLG 323
Query: 24 KRTDHSFR 1
KR D SFR
Sbjct: 324 KRNDSSFR 331
>ref|XP_004511607.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X1
[Cicer arietinum] gi|502160026|ref|XP_004511608.1|
PREDICTED: DNA-directed RNA polymerase D subunit 1-like
isoform X2 [Cicer arietinum]
gi|502160029|ref|XP_004511609.1| PREDICTED: DNA-directed
RNA polymerase D subunit 1-like isoform X3 [Cicer
arietinum] gi|502160032|ref|XP_004511610.1| PREDICTED:
DNA-directed RNA polymerase D subunit 1-like isoform X4
[Cicer arietinum]
Length = 1475
Score = 245 bits (625), Expect = 1e-62
Identities = 135/248 (54%), Positives = 171/248 (68%), Gaps = 11/248 (4%)
Frame = -3
Query: 711 EVVQILNKICPGCKSIRQDIRLKAANSTNKHHRPKGCKYCSGDPRVWYPTMKFKVSSNQD 532
E+ +ILNKICP CKSIR+++R+K S ++PKGCKYC G+ YPTMKF+VSSN D
Sbjct: 90 EIAEILNKICPACKSIRRELRIKRVKSLLGFNQPKGCKYC-GNGMGRYPTMKFRVSSN-D 147
Query: 531 VFRKTAIIVEVNEKLPKKFRNRSLKDVLPSDFWDFIPKDAHQEGSYSTLNRRVLSYAQVH 352
FR+TAIIVEVN+ KK RN L LP+D+WDFI DA QE +++ NR VLS QV
Sbjct: 148 FFRRTAIIVEVNDVALKKKRN--LGRGLPADYWDFILGDAQQEENHA--NRMVLSPVQVE 203
Query: 351 YLLKDVDLRFIEEFVSRTDSLFLNSFLVTPNCHRITEVTHAFSNGQRLMFDERTRAYRKL 172
+L VD FI++++ R D + L+ FLV PNCHR+TEV H S G L FD RTRA +KL
Sbjct: 204 NILSGVDSNFIKKYIPRMDLVALSCFLVAPNCHRVTEVPHRLSGGYPLSFDNRTRACKKL 263
Query: 171 VDFRGMANELGSRVLECLKLSKLISEK-PSTT----------DSSSNVSGLKWMKEVVLG 25
VDFRG ANEL SRVL+CL+ SK+ +K PS +++ N SGL+WMK++VLG
Sbjct: 264 VDFRGTANELSSRVLDCLRFSKINPDKTPSNVFTEIQLRKVGENACNSSGLRWMKDIVLG 323
Query: 24 KRTDHSFR 1
KR D SFR
Sbjct: 324 KRNDSSFR 331
>ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
gi|355512499|gb|AES94122.1| DNA-directed RNA polymerase
subunit beta [Medicago truncatula]
Length = 1687
Score = 236 bits (601), Expect = 7e-60
Identities = 135/254 (53%), Positives = 166/254 (65%), Gaps = 17/254 (6%)
Frame = -3
Query: 711 EVVQILNKICPGCKSIRQDIRLKAANST-NKHHRPKGCKYCSGDPRVWYPTMKFKVSSNQ 535
E+ +IL KICP CKSIRQ+IR+K A S +++PKGCKYC G+ YP MKF+VSSN
Sbjct: 240 EIAEILQKICPACKSIRQEIRVKRAKSLLGYNNQPKGCKYCCGNGMGRYPAMKFRVSSN- 298
Query: 534 DVFRKTAIIVEVNEKLPKKFRNRSLKDVLPSDFWDFIPKDAHQEGSYSTLNRRVLSYAQV 355
D FR+TAIIVEVN+ K RN L LP+D+WDFI D QE ++ +NR+VLS QV
Sbjct: 299 DFFRRTAIIVEVNDISLNKKRN--LGRGLPADYWDFILGDVQQEENH--VNRKVLSPVQV 354
Query: 354 HYLLKDVDLRFIEEFVSRTDSLFLNSFLVTPNCHRITEVTHAFSNGQRLMFDERTRAYRK 175
LL VD FIE+F+ D + L+ FLV PNCHR+TEV H S G L FD RTRA +K
Sbjct: 355 ENLLSGVDPNFIEKFIPSMDLVGLSCFLVAPNCHRVTEVPHRLSGGYPLSFDNRTRACKK 414
Query: 174 LVDFRGMANELGSRVLECLKLSKLISE--KPSTT--------------DSSSNVSGLKWM 43
LVDFRG ANEL SRVL+CL+ SK P T +++ N SGL+WM
Sbjct: 415 LVDFRGTANELSSRVLDCLRFSKASFSVINPDRTPVNIFTELQQRKVGENACNSSGLRWM 474
Query: 42 KEVVLGKRTDHSFR 1
K+VVLGKR D +FR
Sbjct: 475 KDVVLGKRNDCTFR 488
>ref|XP_006573756.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X3
[Glycine max]
Length = 1455
Score = 231 bits (590), Expect = 1e-58
Identities = 131/248 (52%), Positives = 167/248 (67%), Gaps = 11/248 (4%)
Frame = -3
Query: 711 EVVQILNKICPGCKSIRQDIRLKAANSTNKHHRPKGCKYCSGDPRVWYPTMKFKVSSNQD 532
E+ ILNKICP CKSIR + K A R C YCS YP+M+F+VSSN D
Sbjct: 89 EIAHILNKICPVCKSIRH--KSKGARLIYGTKRSNDCNYCSV-----YPSMQFRVSSN-D 140
Query: 531 VFRKTAIIVEVNEKLPKKFRNRSLKDVLPSDFWDFIPKDAHQEGSYSTLNRRVLSYAQVH 352
+FR+TAIIVEV K ++L +P+DFW+FIP DA QE +Y +NRRVLS QV+
Sbjct: 141 LFRRTAIIVEV------KASKKTLGTEIPADFWNFIPCDAQQEENY--VNRRVLSPVQVN 192
Query: 351 YLLKDVDLRFIEEFVSRTDSLFLNSFLVTPNCHRITEVTHAFSNGQRLMFDERTRAYRKL 172
YLL DVD FIE+++ R + L LN F VTPNCHR+TEV +A S+G RL FD+RTR+ +KL
Sbjct: 193 YLLNDVDPDFIEKYIPRKNLLCLNCFPVTPNCHRVTEVPYAISSGSRLSFDDRTRSCKKL 252
Query: 171 VDFRGMANELGSRVLECLKLSKLISEKPSTT-----------DSSSNVSGLKWMKEVVLG 25
VDFRG ANEL SRVL+CL++SKL +K + +++ N SGL+W+K+VVLG
Sbjct: 253 VDFRGTANELSSRVLDCLRISKLNPDKTPNSIFADIQQRKIGENAFNSSGLRWIKDVVLG 312
Query: 24 KRTDHSFR 1
KR D SFR
Sbjct: 313 KRNDSSFR 320
>ref|XP_006573755.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
[Glycine max]
Length = 1457
Score = 231 bits (590), Expect = 1e-58
Identities = 131/248 (52%), Positives = 167/248 (67%), Gaps = 11/248 (4%)
Frame = -3
Query: 711 EVVQILNKICPGCKSIRQDIRLKAANSTNKHHRPKGCKYCSGDPRVWYPTMKFKVSSNQD 532
E+ ILNKICP CKSIR + K A R C YCS YP+M+F+VSSN D
Sbjct: 89 EIAHILNKICPVCKSIRH--KSKGARLIYGTKRSNDCNYCSV-----YPSMQFRVSSN-D 140
Query: 531 VFRKTAIIVEVNEKLPKKFRNRSLKDVLPSDFWDFIPKDAHQEGSYSTLNRRVLSYAQVH 352
+FR+TAIIVEV K ++L +P+DFW+FIP DA QE +Y +NRRVLS QV+
Sbjct: 141 LFRRTAIIVEV------KASKKTLGTEIPADFWNFIPCDAQQEENY--VNRRVLSPVQVN 192
Query: 351 YLLKDVDLRFIEEFVSRTDSLFLNSFLVTPNCHRITEVTHAFSNGQRLMFDERTRAYRKL 172
YLL DVD FIE+++ R + L LN F VTPNCHR+TEV +A S+G RL FD+RTR+ +KL
Sbjct: 193 YLLNDVDPDFIEKYIPRKNLLCLNCFPVTPNCHRVTEVPYAISSGSRLSFDDRTRSCKKL 252
Query: 171 VDFRGMANELGSRVLECLKLSKLISEKPSTT-----------DSSSNVSGLKWMKEVVLG 25
VDFRG ANEL SRVL+CL++SKL +K + +++ N SGL+W+K+VVLG
Sbjct: 253 VDFRGTANELSSRVLDCLRISKLNPDKTPNSIFADIQQRKIGENAFNSSGLRWIKDVVLG 312
Query: 24 KRTDHSFR 1
KR D SFR
Sbjct: 313 KRNDSSFR 320
>ref|XP_006573754.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
[Glycine max]
Length = 1458
Score = 231 bits (590), Expect = 1e-58
Identities = 131/248 (52%), Positives = 167/248 (67%), Gaps = 11/248 (4%)
Frame = -3
Query: 711 EVVQILNKICPGCKSIRQDIRLKAANSTNKHHRPKGCKYCSGDPRVWYPTMKFKVSSNQD 532
E+ ILNKICP CKSIR + K A R C YCS YP+M+F+VSSN D
Sbjct: 89 EIAHILNKICPVCKSIRH--KSKGARLIYGTKRSNDCNYCSV-----YPSMQFRVSSN-D 140
Query: 531 VFRKTAIIVEVNEKLPKKFRNRSLKDVLPSDFWDFIPKDAHQEGSYSTLNRRVLSYAQVH 352
+FR+TAIIVEV K ++L +P+DFW+FIP DA QE +Y +NRRVLS QV+
Sbjct: 141 LFRRTAIIVEV------KASKKTLGTEIPADFWNFIPCDAQQEENY--VNRRVLSPVQVN 192
Query: 351 YLLKDVDLRFIEEFVSRTDSLFLNSFLVTPNCHRITEVTHAFSNGQRLMFDERTRAYRKL 172
YLL DVD FIE+++ R + L LN F VTPNCHR+TEV +A S+G RL FD+RTR+ +KL
Sbjct: 193 YLLNDVDPDFIEKYIPRKNLLCLNCFPVTPNCHRVTEVPYAISSGSRLSFDDRTRSCKKL 252
Query: 171 VDFRGMANELGSRVLECLKLSKLISEKPSTT-----------DSSSNVSGLKWMKEVVLG 25
VDFRG ANEL SRVL+CL++SKL +K + +++ N SGL+W+K+VVLG
Sbjct: 253 VDFRGTANELSSRVLDCLRISKLNPDKTPNSIFADIQQRKIGENAFNSSGLRWIKDVVLG 312
Query: 24 KRTDHSFR 1
KR D SFR
Sbjct: 313 KRNDSSFR 320
>ref|XP_007158454.1| hypothetical protein PHAVU_002G153700g [Phaseolus vulgaris]
gi|561031869|gb|ESW30448.1| hypothetical protein
PHAVU_002G153700g [Phaseolus vulgaris]
Length = 1464
Score = 231 bits (590), Expect = 1e-58
Identities = 129/239 (53%), Positives = 162/239 (67%), Gaps = 2/239 (0%)
Frame = -3
Query: 711 EVVQILNKICPGCKSIRQDIRLKAANSTNKHHRPKGCKYCSGDPRVWYPTMKFKVSSNQD 532
E+ QILNKICP CKSIR + K A R CKYCSG+ YP MKFK SSN D
Sbjct: 89 EIAQILNKICPVCKSIRH--KSKGAQLIFGIKRSINCKYCSGNGVGRYPAMKFKFSSN-D 145
Query: 531 VFRKTAIIVEVNEKLPKKFRNRSLKDVLPSDFWDFIPKDAHQEGSYSTLNRRVLSYAQVH 352
++R+TAIIVEVN+K KK RSL P+D+WDF+P DA QE +Y +NRRVLS QV
Sbjct: 146 LYRRTAIIVEVNDKASKKSLGRSL----PADYWDFLPYDAQQEENY--VNRRVLSPGQVT 199
Query: 351 YLLKDVDLRFIEEFVSRTDSLFLNSFLVTPNCHRITEVTHAFSNGQRLMFDERTRAYRKL 172
LL DVD FIE++V R + + LN F VTPNCHR+TEV +A SNG RL FD+RTR+ +KL
Sbjct: 200 SLLNDVDPNFIEKYVPRNNLITLNCFPVTPNCHRVTEVPYAISNGNRLSFDDRTRSCKKL 259
Query: 171 VDFRGMANELGSRVLECLKLSKLIS--EKPSTTDSSSNVSGLKWMKEVVLGKRTDHSFR 1
VDFRG ANEL SR+ + + +K +++ N SGL+W+K+V+LGKR D +FR
Sbjct: 260 VDFRGTANELSSRLNPDKTPISIFADIQKKKVAENACNSSGLRWIKDVILGKRNDSTFR 318
>ref|XP_007158453.1| hypothetical protein PHAVU_002G153700g [Phaseolus vulgaris]
gi|561031868|gb|ESW30447.1| hypothetical protein
PHAVU_002G153700g [Phaseolus vulgaris]
Length = 1463
Score = 231 bits (590), Expect = 1e-58
Identities = 129/239 (53%), Positives = 162/239 (67%), Gaps = 2/239 (0%)
Frame = -3
Query: 711 EVVQILNKICPGCKSIRQDIRLKAANSTNKHHRPKGCKYCSGDPRVWYPTMKFKVSSNQD 532
E+ QILNKICP CKSIR + K A R CKYCSG+ YP MKFK SSN D
Sbjct: 89 EIAQILNKICPVCKSIRH--KSKGAQLIFGIKRSINCKYCSGNGVGRYPAMKFKFSSN-D 145
Query: 531 VFRKTAIIVEVNEKLPKKFRNRSLKDVLPSDFWDFIPKDAHQEGSYSTLNRRVLSYAQVH 352
++R+TAIIVEVN+K KK RSL P+D+WDF+P DA QE +Y +NRRVLS QV
Sbjct: 146 LYRRTAIIVEVNDKASKKSLGRSL----PADYWDFLPYDAQQEENY--VNRRVLSPGQVT 199
Query: 351 YLLKDVDLRFIEEFVSRTDSLFLNSFLVTPNCHRITEVTHAFSNGQRLMFDERTRAYRKL 172
LL DVD FIE++V R + + LN F VTPNCHR+TEV +A SNG RL FD+RTR+ +KL
Sbjct: 200 SLLNDVDPNFIEKYVPRNNLITLNCFPVTPNCHRVTEVPYAISNGNRLSFDDRTRSCKKL 259
Query: 171 VDFRGMANELGSRVLECLKLSKLIS--EKPSTTDSSSNVSGLKWMKEVVLGKRTDHSFR 1
VDFRG ANEL SR+ + + +K +++ N SGL+W+K+V+LGKR D +FR
Sbjct: 260 VDFRGTANELSSRLNPDKTPISIFADIQKKKVAENACNSSGLRWIKDVILGKRNDSTFR 318
>ref|XP_006590533.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Glycine
max]
Length = 1369
Score = 223 bits (569), Expect = 4e-56
Identities = 127/248 (51%), Positives = 163/248 (65%), Gaps = 11/248 (4%)
Frame = -3
Query: 711 EVVQILNKICPGCKSIRQDIRLKAANSTNKHHRPKGCKYCSGDPRVWYPTMKFKVSSNQD 532
E+ ILNKICP CKSIR + K R C YCS YP+MKF+VSSN D
Sbjct: 3 EIAHILNKICPVCKSIRH--KSKGVRLIYGTKRSNDCNYCSA-----YPSMKFRVSSN-D 54
Query: 531 VFRKTAIIVEVNEKLPKKFRNRSLKDVLPSDFWDFIPKDAHQEGSYSTLNRRVLSYAQVH 352
+FR+TAIIVEV K ++L +P+D+W+FIP DA QE +Y +NRRVLS AQV
Sbjct: 55 LFRRTAIIVEV------KASKKTLGTEIPADYWNFIPCDAQQEENY--VNRRVLSPAQVL 106
Query: 351 YLLKDVDLRFIEEFVSRTDSLFLNSFLVTPNCHRITEVTHAFSNGQRLMFDERTRAYRKL 172
LL VD FIE+++ R + L+LN F VTPNCHR+TEV +A S+G RL FD+RTR+ +KL
Sbjct: 107 NLLNGVDPDFIEKYIPRKNLLYLNCFPVTPNCHRVTEVPYAISSGSRLSFDDRTRSCKKL 166
Query: 171 VDFRGMANELGSRVLECLKLSKLISEKPSTT-----------DSSSNVSGLKWMKEVVLG 25
VDFRG NEL SRVL+CL++SKL +K + +++ N SGL+W+K+VVLG
Sbjct: 167 VDFRGTPNELSSRVLDCLRISKLNPDKTPNSIFADIQQRKIGENACNSSGLRWIKDVVLG 226
Query: 24 KRTDHSFR 1
KR D S R
Sbjct: 227 KRNDSSLR 234
>ref|XP_006440521.1| hypothetical protein CICLE_v10018489mg [Citrus clementina]
gi|557542783|gb|ESR53761.1| hypothetical protein
CICLE_v10018489mg [Citrus clementina]
Length = 1443
Score = 223 bits (568), Expect = 5e-56
Identities = 125/247 (50%), Positives = 162/247 (65%), Gaps = 10/247 (4%)
Frame = -3
Query: 711 EVVQILNKICPGCKSIRQDIRLKAANSTNKHHRPKGCKYCSGDPRVWYPTMKFKVSSNQD 532
++ ++LN ICP CK+IR++ R K A S+ K +P+ CKYC +P WYP M+FK+SS +D
Sbjct: 90 DIAKLLNSICPKCKTIRKE-RQKGAGSSRKE-QPRVCKYCVRNPAQWYPRMRFKLSS-KD 146
Query: 531 VFRKTAIIVEVNEKLPKKFRNRSLKDVLPSDFWDFIPKDAHQEGSYSTLNRRVLSYAQVH 352
+ KTAIIVE++EKL KK + LP D+W FIP DA QE + NR+VLS QV
Sbjct: 147 LSGKTAIIVEIDEKLSKKNKK------LPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVS 200
Query: 351 YLLKDVDLRFIEEFVSRTDSLFLNSFLVTPNCHRITEVTHAFSNGQRLMFDERTRAYRKL 172
YLLKDVD EEF+ D+ FL F VTPN HR+TEV HAFS+ ++L FD TR +K+
Sbjct: 201 YLLKDVDPSIREEFILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKM 260
Query: 171 VDFRGMANELGSRVLECLKLSKLISEKPSTTDSS----------SNVSGLKWMKEVVLGK 22
VD+RG EL V +CLK+SKL +K S DS+ SN SGL+W+K+VVLGK
Sbjct: 261 VDYRGRDIELSHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGK 320
Query: 21 RTDHSFR 1
R D FR
Sbjct: 321 RNDDCFR 327
>ref|XP_006477376.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
[Citrus sinensis] gi|568847098|ref|XP_006477377.1|
PREDICTED: DNA-directed RNA polymerase IV subunit 1-like
isoform X3 [Citrus sinensis]
gi|568847100|ref|XP_006477378.1| PREDICTED: DNA-directed
RNA polymerase IV subunit 1-like isoform X4 [Citrus
sinensis]
Length = 1443
Score = 220 bits (561), Expect = 3e-55
Identities = 124/247 (50%), Positives = 161/247 (65%), Gaps = 10/247 (4%)
Frame = -3
Query: 711 EVVQILNKICPGCKSIRQDIRLKAANSTNKHHRPKGCKYCSGDPRVWYPTMKFKVSSNQD 532
++ ++LN ICP CK+IR++ R K A S+ K +P+ CKYC +P WYP M+FK+SS +D
Sbjct: 90 DIAKLLNSICPKCKTIRKE-RQKGAGSSRKE-QPRVCKYCVRNPAQWYPRMRFKLSS-KD 146
Query: 531 VFRKTAIIVEVNEKLPKKFRNRSLKDVLPSDFWDFIPKDAHQEGSYSTLNRRVLSYAQVH 352
+ KTAIIVE++EK KK + LP D+W FIP DA QE + NR+VLS QV
Sbjct: 147 LSGKTAIIVEIDEKPSKKNKK------LPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVS 200
Query: 351 YLLKDVDLRFIEEFVSRTDSLFLNSFLVTPNCHRITEVTHAFSNGQRLMFDERTRAYRKL 172
YLLKDVD EEF+ D+ FL F VTPN HR+TEV HAFS+ ++L FD TR +K+
Sbjct: 201 YLLKDVDPSIREEFILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKM 260
Query: 171 VDFRGMANELGSRVLECLKLSKLISEKPSTTDSS----------SNVSGLKWMKEVVLGK 22
VD+RG EL V +CLK+SKL +K S DS+ SN SGL+W+K+VVLGK
Sbjct: 261 VDYRGRDIELSHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGK 320
Query: 21 RTDHSFR 1
R D FR
Sbjct: 321 RNDDCFR 327
>ref|XP_006477375.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
[Citrus sinensis]
Length = 1481
Score = 220 bits (561), Expect = 3e-55
Identities = 124/247 (50%), Positives = 161/247 (65%), Gaps = 10/247 (4%)
Frame = -3
Query: 711 EVVQILNKICPGCKSIRQDIRLKAANSTNKHHRPKGCKYCSGDPRVWYPTMKFKVSSNQD 532
++ ++LN ICP CK+IR++ R K A S+ K +P+ CKYC +P WYP M+FK+SS +D
Sbjct: 128 DIAKLLNSICPKCKTIRKE-RQKGAGSSRKE-QPRVCKYCVRNPAQWYPRMRFKLSS-KD 184
Query: 531 VFRKTAIIVEVNEKLPKKFRNRSLKDVLPSDFWDFIPKDAHQEGSYSTLNRRVLSYAQVH 352
+ KTAIIVE++EK KK + LP D+W FIP DA QE + NR+VLS QV
Sbjct: 185 LSGKTAIIVEIDEKPSKKNKK------LPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVS 238
Query: 351 YLLKDVDLRFIEEFVSRTDSLFLNSFLVTPNCHRITEVTHAFSNGQRLMFDERTRAYRKL 172
YLLKDVD EEF+ D+ FL F VTPN HR+TEV HAFS+ ++L FD TR +K+
Sbjct: 239 YLLKDVDPSIREEFILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKM 298
Query: 171 VDFRGMANELGSRVLECLKLSKLISEKPSTTDSS----------SNVSGLKWMKEVVLGK 22
VD+RG EL V +CLK+SKL +K S DS+ SN SGL+W+K+VVLGK
Sbjct: 299 VDYRGRDIELSHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGK 358
Query: 21 RTDHSFR 1
R D FR
Sbjct: 359 RNDDCFR 365