BLASTX nr result
ID: Paeonia24_contig00025082
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Paeonia24_contig00025082
(356 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABG22123.1| polyprotein [Prunus avium] 85 2e-18
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 87 3e-18
gb|ABG22121.1| polyprotein [Solanum melongena] 82 8e-18
gb|EXB73293.1| Retrovirus-related Pol polyprotein from transposo... 86 3e-17
gb|AAK70406.1|AF369930_1 pol polyprotein [Citrus x paradisi] 86 5e-16
emb|CAN64520.1| hypothetical protein VITISV_030941 [Vitis vinifera] 86 7e-15
pir||S23320 hypothetical protein 3 - Arabidopsis thaliana retrot... 80 9e-15
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa] 81 1e-14
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi... 83 4e-14
pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis t... 80 6e-14
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar... 76 7e-14
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 81 7e-14
emb|CAN70013.1| hypothetical protein VITISV_017116 [Vitis vinifera] 81 1e-13
ref|XP_003606104.1| Aspartyl-tRNA synthetase [Medicago truncatul... 81 2e-13
ref|XP_004229099.1| PREDICTED: uncharacterized protein LOC101259... 80 3e-13
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 80 3e-13
emb|CAN67902.1| hypothetical protein VITISV_037907 [Vitis vinifera] 80 3e-13
emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana] 79 5e-13
emb|CAD40121.3| OSJNBa0061C06.5 [Oryza sativa Japonica Group] 79 9e-13
gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidop... 79 9e-13
>gb|ABG22123.1| polyprotein [Prunus avium]
Length = 276
Score = 85.1 bits (209), Expect(2) = 2e-18
Identities = 41/74 (55%), Positives = 56/74 (75%), Gaps = 2/74 (2%)
Frame = +1
Query: 106 ISCKATLQLTIALSTTEAEYMTTTKVVKEAIWLR--VQDLGLTQECTILFCDNQSVIHLT 279
+S ++ LQ T+ALSTTEAEYM T+ +KEAIWL+ + DLG+ Q+ ++CD+QS I+L
Sbjct: 202 VSWRSILQSTVALSTTEAEYMAVTEAIKEAIWLQGLLDDLGVQQDHVDVYCDSQSAIYLA 261
Query: 280 KNQVHHKRTHNRDV 321
KNQVHH RT + DV
Sbjct: 262 KNQVHHARTKHIDV 275
Score = 33.1 bits (74), Expect(2) = 2e-18
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 3 LRYLKRSTNVGLVFDRSKDSSEKVVRCVNSNYAG 104
LRY+ + +VGL+F + K S + VV V+S+YAG
Sbjct: 149 LRYILGTVDVGLLFQQDKVSGQCVVGYVDSDYAG 182
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 86.7 bits (213), Expect(2) = 3e-18
Identities = 48/93 (51%), Positives = 65/93 (69%), Gaps = 10/93 (10%)
Frame = +1
Query: 106 ISCKATLQLTIALSTTEAEYMTTTKVVKEAIWLR--VQDLGLTQECTILFCDNQSVIHLT 279
IS K++LQ ALS+TEAE++ TT+ VKEA+WLR + +L L Q+ +FCDNQ+ IHL
Sbjct: 1209 ISWKSSLQSGGALSSTEAEFIATTEAVKEAMWLRGLLNELWLNQKIVQVFCDNQNAIHLV 1268
Query: 280 KNQVHHKRTHN--------RDVFSKGTVLVSKI 354
KNQ++H+RT + RD KGTV+VSKI
Sbjct: 1269 KNQMYHERTKHIDVKLQFIRDEVGKGTVVVSKI 1301
Score = 30.8 bits (68), Expect(2) = 3e-18
Identities = 13/34 (38%), Positives = 24/34 (70%)
Frame = +3
Query: 3 LRYLKRSTNVGLVFDRSKDSSEKVVRCVNSNYAG 104
+RYLK S+ GL++ ++K +V+ V+S++AG
Sbjct: 1156 MRYLKGSSTCGLLYGKTKSDKIEVMGFVDSDFAG 1189
>gb|ABG22121.1| polyprotein [Solanum melongena]
Length = 361
Score = 81.6 bits (200), Expect(2) = 8e-18
Identities = 42/74 (56%), Positives = 55/74 (74%), Gaps = 2/74 (2%)
Frame = +1
Query: 106 ISCKATLQLTIALSTTEAEYMTTTKVVKEAIWLR--VQDLGLTQECTILFCDNQSVIHLT 279
+S K+TLQ T+ALSTTEAEYM T+ VKEAIWL +++LG+ Q+ ++ D+QS IHL
Sbjct: 287 VSWKSTLQATVALSTTEAEYMAITEAVKEAIWLHGLLEELGVGQKHLMVHSDSQSAIHLA 346
Query: 280 KNQVHHKRTHNRDV 321
KNQV H RT + DV
Sbjct: 347 KNQVFHARTKHIDV 360
Score = 34.3 bits (77), Expect(2) = 8e-18
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +3
Query: 3 LRYLKRSTNVGLVFDRSKDSSEKVVRCVNSNYAG 104
LRY+K + ++GLVF++ K VV +S+YAG
Sbjct: 234 LRYIKNTVDIGLVFEQDKSLGSCVVGYCDSDYAG 267
>gb|EXB73293.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morus
notabilis]
Length = 1822
Score = 85.9 bits (211), Expect(2) = 3e-17
Identities = 47/93 (50%), Positives = 64/93 (68%), Gaps = 10/93 (10%)
Frame = +1
Query: 106 ISCKATLQLTIALSTTEAEYMTTTKVVKEAIWLR--VQDLGLTQECTILFCDNQSVIHLT 279
+S KA LQL +ALSTTEAEY+ T+ VKEA+WL+ + +LG+ Q+ +FCDNQS I LT
Sbjct: 557 VSWKAQLQLVVALSTTEAEYIAATEGVKEAMWLKGLIGELGIVQDEVEVFCDNQSSILLT 616
Query: 280 KNQVHHKRTHN--------RDVFSKGTVLVSKI 354
KNQ+ + RT + RD+ S+GTV + KI
Sbjct: 617 KNQMFYDRTKHIDIKLHFIRDIISRGTVTLEKI 649
Score = 28.1 bits (61), Expect(2) = 3e-17
Identities = 10/34 (29%), Positives = 26/34 (76%)
Frame = +3
Query: 3 LRYLKRSTNVGLVFDRSKDSSEKVVRCVNSNYAG 104
+++++ ++NVGL++ R ++ EK+ V++++AG
Sbjct: 504 VKWVQGASNVGLLYKRMRNDGEKLRGYVDADFAG 537
>gb|AAK70406.1|AF369930_1 pol polyprotein [Citrus x paradisi]
Length = 297
Score = 85.5 bits (210), Expect(2) = 5e-16
Identities = 47/93 (50%), Positives = 61/93 (65%), Gaps = 10/93 (10%)
Frame = +1
Query: 106 ISCKATLQLTIALSTTEAEYMTTTKVVKEAIWLR--VQDLGLTQECTILFCDNQSVIHLT 279
+S ++ LQ TIALSTTEAEY+ T+ VKEAIWL+ + DLG+ QE +FCDNQS I L
Sbjct: 173 VSWRSILQSTIALSTTEAEYIAATEAVKEAIWLKGLLGDLGVIQENIAVFCDNQSAIFLA 232
Query: 280 KNQVHHKRTHN--------RDVFSKGTVLVSKI 354
KNQ +H RT + R++ G VL+ KI
Sbjct: 233 KNQTYHARTKHIDVKYHYVREIIEGGDVLLKKI 265
Score = 24.3 bits (51), Expect(2) = 5e-16
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 3 LRYLKRSTNVGLVFDRSKDSSEKVVRCVNSNYAG 104
LRYL + +VGL+F K+ ++ V +S++AG
Sbjct: 122 LRYLYGTVDVGLLF--KKNCGQQCVGYCDSDFAG 153
>emb|CAN64520.1| hypothetical protein VITISV_030941 [Vitis vinifera]
Length = 1527
Score = 85.5 bits (210), Expect = 7e-15
Identities = 42/74 (56%), Positives = 56/74 (75%), Gaps = 2/74 (2%)
Frame = +1
Query: 106 ISCKATLQLTIALSTTEAEYMTTTKVVKEAIWLR--VQDLGLTQECTILFCDNQSVIHLT 279
+S KA LQL +A+STTE EYM T+VVKEAIWL+ +++LG+ + I++CDNQS IHL
Sbjct: 1448 MSWKANLQLVVAISTTEVEYMAMTEVVKEAIWLKGIIEELGMYRGKVIVYCDNQSPIHLA 1507
Query: 280 KNQVHHKRTHNRDV 321
KNQ HKR+ + DV
Sbjct: 1508 KNQFFHKRSKHIDV 1521
>pir||S23320 hypothetical protein 3 - Arabidopsis thaliana retrotransposon Ta1-2
(strain Landsberg) (fragment) gi|1345515|emb|CAA37925.1|
unnamed protein product [Arabidopsis thaliana]
Length = 154
Score = 80.1 bits (196), Expect(2) = 9e-15
Identities = 40/74 (54%), Positives = 54/74 (72%), Gaps = 2/74 (2%)
Frame = +1
Query: 106 ISCKATLQLTIALSTTEAEYMTTTKVVKEAIWLR--VQDLGLTQECTILFCDNQSVIHLT 279
+S KA LQ ALSTTEAE+M T+V KEA+W++ ++DLGL Q+ L+CD+QS I L+
Sbjct: 53 VSWKANLQSVTALSTTEAEFMALTEVAKEALWIKGLMKDLGLEQDKVTLWCDSQSAICLS 112
Query: 280 KNQVHHKRTHNRDV 321
KN HH+RT + DV
Sbjct: 113 KNSTHHERTKHIDV 126
Score = 25.4 bits (54), Expect(2) = 9e-15
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +3
Query: 3 LRYLKRSTNVGLVFDRSKDSSEKVVRCVNSNYA 101
LRY++ S ++ LVF + K+ ++ R +S+YA
Sbjct: 2 LRYMRGSQDLNLVFTKEKEF--RITRYCDSDYA 32
>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
Length = 1297
Score = 81.3 bits (199), Expect(2) = 1e-14
Identities = 46/93 (49%), Positives = 56/93 (60%), Gaps = 10/93 (10%)
Frame = +1
Query: 106 ISCKATLQLTIALSTTEAEYMTTTKVVKEAIWLR--VQDLGLTQECTILFCDNQSVIHLT 279
+S KATLQ ALSTTEAEYM T+ KEAIWL LG+ QE ++ CD+QS IHL
Sbjct: 1179 VSWKATLQAVTALSTTEAEYMALTEASKEAIWLNGLAGQLGVHQEGVVVKCDSQSAIHLA 1238
Query: 280 KNQVHHKRTHN--------RDVFSKGTVLVSKI 354
KNQV H RT + RD G ++V K+
Sbjct: 1239 KNQVFHARTKHIDARYHRIRDWVEAGVIIVEKV 1271
Score = 23.9 bits (50), Expect(2) = 1e-14
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 6 RYLKRSTNVGLVFDRSKDSSEKVVRCVNSNYAG 104
+YLK + +G++F+R + V V+S++AG
Sbjct: 1128 KYLKNTRQLGIMFER-RQGEACVAGFVDSDFAG 1159
>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 83.2 bits (204), Expect = 4e-14
Identities = 46/93 (49%), Positives = 62/93 (66%), Gaps = 10/93 (10%)
Frame = +1
Query: 106 ISCKATLQLTIALSTTEAEYMTTTKVVKEAIWLR--VQDLGLTQECTILFCDNQSVIHLT 279
IS K+ LQ +A STTE+EYM+ T+ VKEAIWL+ ++D G Q+ +FCD+QS I L+
Sbjct: 1233 ISWKSGLQRVVAQSTTESEYMSLTEAVKEAIWLKGLLKDFGYEQKSVEIFCDSQSAIALS 1292
Query: 280 KNQVHHKRTHN--------RDVFSKGTVLVSKI 354
KN VHH+RT + R++ S GTV V KI
Sbjct: 1293 KNNVHHERTKHIDVKYHFIREIISDGTVEVLKI 1325
>pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis thaliana
retrotransposon Ta1 (fragment) gi|16356|emb|CAA37917.1|
reverse transcriptase [Arabidopsis thaliana]
Length = 587
Score = 79.7 bits (195), Expect(2) = 6e-14
Identities = 45/93 (48%), Positives = 59/93 (63%), Gaps = 10/93 (10%)
Frame = +1
Query: 106 ISCKATLQLTIALSTTEAEYMTTTKVVKEAIWLR--VQDLGLTQECTILFCDNQSVIHLT 279
+S KA LQ ALSTTEAE+M T+ KEA+W++ ++DLGL Q+ L+CD+QS I L+
Sbjct: 463 VSWKANLQSVTALSTTEAEFMALTEAAKEALWIKGLMKDLGLEQDKVTLWCDSQSAICLS 522
Query: 280 KNQVHHKRTHN--------RDVFSKGTVLVSKI 354
KN HH+RT + RDV G V V KI
Sbjct: 523 KNSTHHERTKHIDVRYNFIRDVVEAGDVDVLKI 555
Score = 23.1 bits (48), Expect(2) = 6e-14
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 3 LRYLKRSTNVGLVFDRSKDSSEKVVRCVNSNYA 101
LRY++ S ++ LVF + K+ +V +S+YA
Sbjct: 412 LRYMRGSQDLNLVFTKEKEF--RVTGYCDSDYA 442
>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 76.3 bits (186), Expect(2) = 7e-14
Identities = 41/93 (44%), Positives = 61/93 (65%), Gaps = 10/93 (10%)
Frame = +1
Query: 106 ISCKATLQLTIALSTTEAEYMTTTKVVKEAIWLR--VQDLGLTQECTILFCDNQSVIHLT 279
+S KA+LQ +A+STTEAEY+ + KEA+W++ +QD+G+ Q+ ++CD+QS I L+
Sbjct: 1232 VSWKASLQPVVAMSTTEAEYIALAEAAKEAMWIKGLLQDMGMQQDKVKIWCDSQSAICLS 1291
Query: 280 KNQVHHKRTHN--------RDVFSKGTVLVSKI 354
KN V+H+RT + RDV G V V KI
Sbjct: 1292 KNSVYHERTKHIDVRFNYIRDVVESGDVDVLKI 1324
Score = 26.2 bits (56), Expect(2) = 7e-14
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 3 LRYLKRSTNVGLVFDRSKDSSEKVVRCVNSNYA 101
+RYLK + ++ LVF + KD + V +SNYA
Sbjct: 1181 MRYLKGAQDLNLVFTKEKDFT--VTGYCDSNYA 1211
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 81.3 bits (199), Expect(2) = 7e-14
Identities = 42/93 (45%), Positives = 60/93 (64%), Gaps = 10/93 (10%)
Frame = +1
Query: 106 ISCKATLQLTIALSTTEAEYMTTTKVVKEAIWLR--VQDLGLTQECTILFCDNQSVIHLT 279
+S KA LQ +ALSTTEAEYM T+ VKEAIWL+ ++L + + +++CDNQS IHL
Sbjct: 1085 VSWKANLQSVVALSTTEAEYMAMTEAVKEAIWLKGITEELAMYRGKVVVYCDNQSAIHLA 1144
Query: 280 KNQVHHKRTHN--------RDVFSKGTVLVSKI 354
KNQ H+R+ + RD+ + G + V K+
Sbjct: 1145 KNQSFHERSKHIDVRLHFVRDIIAAGEIGVGKV 1177
Score = 21.2 bits (43), Expect(2) = 7e-14
Identities = 9/33 (27%), Positives = 20/33 (60%)
Frame = +3
Query: 6 RYLKRSTNVGLVFDRSKDSSEKVVRCVNSNYAG 104
+YL + ++GLV+ + ++ V+++YAG
Sbjct: 1033 QYLAGTRSLGLVYGGNSQLETQLQGFVDADYAG 1065
>emb|CAN70013.1| hypothetical protein VITISV_017116 [Vitis vinifera]
Length = 947
Score = 81.3 bits (199), Expect = 1e-13
Identities = 43/88 (48%), Positives = 58/88 (65%), Gaps = 5/88 (5%)
Frame = +1
Query: 106 ISCKATLQLTIALSTTEAEYMTTTKVVKEAIWLR--VQDLGLTQECTILFCDNQSVIHLT 279
IS KA LQL +ALSTTEAEYM T+ V E IWL+ ++L + + +++CDNQS IHL
Sbjct: 860 ISWKANLQLVVALSTTEAEYMAMTEAVNETIWLKGITKELAMNRGKVVVYCDNQSAIHLA 919
Query: 280 KNQVHHKRTHNRDV---FSKGTVLVSKI 354
KNQ HKR+ + DV F + V+ +I
Sbjct: 920 KNQSFHKRSKHIDVRLHFVRNIVVAGEI 947
>ref|XP_003606104.1| Aspartyl-tRNA synthetase [Medicago truncatula]
gi|355507159|gb|AES88301.1| Aspartyl-tRNA synthetase
[Medicago truncatula]
Length = 803
Score = 80.9 bits (198), Expect = 2e-13
Identities = 39/74 (52%), Positives = 54/74 (72%), Gaps = 2/74 (2%)
Frame = +1
Query: 106 ISCKATLQLTIALSTTEAEYMTTTKVVKEAIWLR--VQDLGLTQECTILFCDNQSVIHLT 279
IS KA Q +ALSTT+AEY+ + VKEAIWL+ + +LG+TQEC + CD+QS IHL
Sbjct: 36 ISWKANQQSVVALSTTQAEYIALVEGVKEAIWLKGMIGELGITQECVKIHCDSQSAIHLA 95
Query: 280 KNQVHHKRTHNRDV 321
+QV+H+RT + D+
Sbjct: 96 NHQVYHERTKHIDI 109
>ref|XP_004229099.1| PREDICTED: uncharacterized protein LOC101259364 [Solanum
lycopersicum]
Length = 505
Score = 80.1 bits (196), Expect = 3e-13
Identities = 41/73 (56%), Positives = 52/73 (71%), Gaps = 2/73 (2%)
Frame = +1
Query: 106 ISCKATLQLTIALSTTEAEYMTTTKVVKEAIWLR--VQDLGLTQECTILFCDNQSVIHLT 279
+S KATLQ T+ LSTTEAEYM T+ VKE IWL+ V DLGL + ++CD+ S I L
Sbjct: 387 VSWKATLQPTVTLSTTEAEYMALTEAVKEGIWLKGLVSDLGLHHDQATVYCDSLSAICLA 446
Query: 280 KNQVHHKRTHNRD 318
K+QVHH+RT + D
Sbjct: 447 KDQVHHERTKHID 459
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 80.1 bits (196), Expect = 3e-13
Identities = 41/74 (55%), Positives = 52/74 (70%), Gaps = 2/74 (2%)
Frame = +1
Query: 106 ISCKATLQLTIALSTTEAEYMTTTKVVKEAIWLR--VQDLGLTQECTILFCDNQSVIHLT 279
+S KATLQ T+ LSTTEAEYM T+ KE IWL+ V DLGL + ++CD+ S I L
Sbjct: 1187 VSWKATLQPTVTLSTTEAEYMALTEAAKEGIWLKGLVSDLGLHHDQATVYCDSLSAICLA 1246
Query: 280 KNQVHHKRTHNRDV 321
K+QVHH+RT + DV
Sbjct: 1247 KDQVHHERTKHIDV 1260
>emb|CAN67902.1| hypothetical protein VITISV_037907 [Vitis vinifera]
Length = 735
Score = 80.1 bits (196), Expect = 3e-13
Identities = 41/93 (44%), Positives = 60/93 (64%), Gaps = 10/93 (10%)
Frame = +1
Query: 106 ISCKATLQLTIALSTTEAEYMTTTKVVKEAIWLR--VQDLGLTQECTILFCDNQSVIHLT 279
+S KA LQ +ALS TEAEYM T+VVKE IWL+ +++L + + +++CDNQS IHL
Sbjct: 612 VSWKANLQSVVALSATEAEYMAMTEVVKEVIWLKGIIEELAMYKGKVVVYCDNQSAIHLA 671
Query: 280 KNQVHHKRTHN--------RDVFSKGTVLVSKI 354
KNQ H+R+ + RD+ + G + V K+
Sbjct: 672 KNQSFHERSKHIDVRLHFVRDIIAVGEIGVGKV 704
>emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]
Length = 1363
Score = 79.3 bits (194), Expect = 5e-13
Identities = 44/93 (47%), Positives = 61/93 (65%), Gaps = 10/93 (10%)
Frame = +1
Query: 106 ISCKATLQLTIALSTTEAEYMTTTKVVKEAIWLR--VQDLGLTQECTILFCDNQSVIHLT 279
IS K+ LQ +A S+TE EYM+ T+ VKEAIWL+ ++D G Q+ +FCD+QS I L+
Sbjct: 1240 ISWKSGLQRVVAQSSTECEYMSLTEAVKEAIWLKGLLKDFGYEQKNVEIFCDSQSAIALS 1299
Query: 280 KNQVHHKRTHN--------RDVFSKGTVLVSKI 354
KN VHH+RT + R++ + G V VSKI
Sbjct: 1300 KNNVHHERTKHIDVKFHFIREIIADGKVEVSKI 1332
>emb|CAD40121.3| OSJNBa0061C06.5 [Oryza sativa Japonica Group]
Length = 621
Score = 78.6 bits (192), Expect = 9e-13
Identities = 45/93 (48%), Positives = 60/93 (64%), Gaps = 10/93 (10%)
Frame = +1
Query: 106 ISCKATLQLTIALSTTEAEYMTTTKVVKEAIWLR--VQDLGLTQECTILFCDNQSVIHLT 279
+S KA+LQ T+ALSTTEA+YM +KV KE+IWL+ +L C +FCD+QS I LT
Sbjct: 503 VSWKASLQATVALSTTEADYMAISKVCKESIWLKGLYTELCGVTSCINIFCDSQSAICLT 562
Query: 280 KNQVHHKRTHN--------RDVFSKGTVLVSKI 354
KNQ+ H+RT + R V ++G V V KI
Sbjct: 563 KNQMFHERTKHIDMRYHFIRGVIAEGDVKVCKI 595
>gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1166
Score = 78.6 bits (192), Expect = 9e-13
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 2/73 (2%)
Frame = +1
Query: 106 ISCKATLQLTIALSTTEAEYMTTTKVVKEAIWLR--VQDLGLTQECTILFCDNQSVIHLT 279
IS K++LQ +ALSTTEAEYM T+ VKEAIWL+ +LG Q+ ++ CD+QS + L
Sbjct: 1082 ISWKSSLQSVVALSTTEAEYMALTEAVKEAIWLKGLCSELGFKQDNVMVHCDSQSALALA 1141
Query: 280 KNQVHHKRTHNRD 318
KN VHH+RT + D
Sbjct: 1142 KNSVHHERTEHID 1154