BLASTX nr result
ID: Paeonia24_contig00021064
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Paeonia24_contig00021064 (1312 letters) Database: ./nr 38,876,450 sequences; 13,856,398,315 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis] 582 e-164 ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 579 e-163 ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [... 568 e-159 ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V... 568 e-159 ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th... 553 e-155 ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 551 e-154 ref|XP_004498237.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 540 e-151 ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 540 e-151 ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 540 e-151 gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus... 539 e-150 gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 536 e-149 gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 535 e-149 ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 531 e-148 gb|EXB32317.1| RNA-dependent RNA polymerase 1 [Morus notabilis] 524 e-146 emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum] 518 e-144 ref|NP_001267682.1| RNA-dependent RNA polymerase 1-like [Cucumis... 516 e-143 ref|XP_002315849.2| hypothetical protein POPTR_0010s11560g [Popu... 509 e-142 gb|ABO93004.1| putative RNA-dependent RNA-polymerase [Solanum tu... 509 e-141 gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tu... 508 e-141 gb|AHL27585.1| RNA-dependent RNA polymerase 2 [Salvia miltiorrhiza] 508 e-141 >gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis] Length = 1133 Score = 582 bits (1501), Expect = e-164 Identities = 285/438 (65%), Positives = 354/438 (80%), Gaps = 3/438 (0%) Frame = +3 Query: 6 YLKARKMDLDIVQKPRTFMNSIEHTIIHFGCQISKEKFSVLWRARDATVKFGLGLRKLYF 185 YL AR M+ DIV KPR + S+++ +HFGCQISKEKFS LWR + +V FGLGLR+L F Sbjct: 76 YLLARVMERDIVPKPRATLYSLQNVTLHFGCQISKEKFSFLWRVGNVSVDFGLGLRRLNF 135 Query: 186 HLSHDHVEYKLELSYENIWQIHYRCPHGQTAKYLLIQLYGAPRIFEKID--SGNVYEDHV 359 +L++ VEY+L+L YEN+WQI P GQTAKYLLIQL GAPR++EK S ++ E+ + Sbjct: 136 YLTYGPVEYRLQLLYENVWQIELHRPRGQTAKYLLIQLLGAPRVYEKEVRISFDILENPL 195 Query: 360 FTYYMDPPDDQWVRATDFTSSYCIGQSSALCLELPQGRELSDFGESFADFEAKDGRFSLE 539 F Y+ D PDDQWVRATDFT S CIG SSAL LELP G +L D E+F ++ + RF LE Sbjct: 196 FNYFKDTPDDQWVRATDFTESCCIGHSSALYLELPYGVDLPDLRENFVYYKESEERFILE 255 Query: 540 SGSTFSKNLVLVPIIGPPQGIVLPYQILFKVSCLVQYGCLSGPTLDVRFFRLVDPANI-D 716 SGS+FS+NL LVPI+GPP GI LP++ +FK++ L+Q GCLSGPTLDV F+RLVDP I + Sbjct: 256 SGSSFSRNLDLVPIVGPPSGINLPFETVFKINMLLQNGCLSGPTLDVDFYRLVDPQRIRN 315 Query: 717 IACIEYALDKLYHLKNCCYDPVKWLKYKYRKYLTSEQPPKAPAISLDAGLVYVRRVQITP 896 + CI YAL+KL++LK C Y+P WL +YRKYLT+ +PPK PAI+LD+GLVYVRRVQ+TP Sbjct: 316 VDCINYALEKLFNLKECPYEPAAWLNEQYRKYLTAPRPPKPPAIALDSGLVYVRRVQVTP 375 Query: 897 TKVYFSGPEINVSNRVLRNYLDHIDNFIRISFIDEDLEKLYSTDLSPRTASADGDNRTGI 1076 +KVYF GPEINVSNRVLR Y+D+ID F+R+SF+DE+LEKL+STDLSPRT++A+ D RTGI Sbjct: 376 SKVYFCGPEINVSNRVLREYIDYIDYFLRVSFVDEELEKLFSTDLSPRTSNANEDRRTGI 435 Query: 1077 FRRILSILRNGIVIGSKKFEFLAFSSSQLRENSAWMFASSLGLNASVIREWMGNFRQIRN 1256 +RRILS+LRNGI IG +KFEFLAFSSSQLR+NS WMFA+ G +A IR+W+G+FR IRN Sbjct: 436 YRRILSVLRNGIEIGDRKFEFLAFSSSQLRDNSLWMFAAVDGHSADTIRQWIGDFRSIRN 495 Query: 1257 VAKYAARLGQSFGSSKET 1310 VAKYAARLGQSFGSS ET Sbjct: 496 VAKYAARLGQSFGSSTET 513 >ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis] Length = 1132 Score = 579 bits (1493), Expect = e-163 Identities = 287/439 (65%), Positives = 348/439 (79%), Gaps = 4/439 (0%) Frame = +3 Query: 6 YLKARKMDLDIVQKPRTFMNSIEHTIIHFGCQISKEKFSVLWRARDATVKFGLGLRKLYF 185 YL AR+M+ D V +PRTFM+++EH +HFGC+IS EKF+VLWR + TV FG G+RK+ F Sbjct: 78 YLNARRMEQDTVPRPRTFMHTMEHIELHFGCKISNEKFAVLWRGVNVTVNFGFGMRKINF 137 Query: 186 HLSHDHVEYKLELSYENIWQIHYRCPHGQTAKYLLIQLYGAPRIFEK-IDSGNV-YEDHV 359 LSH EY+LEL YENIW+I CP Q KYLLIQL GAPRIF+K I S ++ YE V Sbjct: 138 LLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQLLGAPRIFQKGIRSPDLLYESPV 197 Query: 360 FTYYMDPPDDQWVRATDFTSSYCIGQSSALCLELPQGRELSDFGESFADFEAKDGRFSLE 539 F ++ + PDDQWVR TDFT S IGQS+ LC+ELP EL DF E+FA ++ + RF LE Sbjct: 198 FNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELPDFKENFAYYKESEDRFVLE 257 Query: 540 SGSTFSKNLVLVPIIGPPQGIVLPYQILFKVSCLVQYGCLSGPTLDVRFFRLVDP--ANI 713 +GS +S++L LVPI+GPP GI LPY+ILFK++ LVQ GC++GP LD F+RLVDP A + Sbjct: 258 TGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPV 317 Query: 714 DIACIEYALDKLYHLKNCCYDPVKWLKYKYRKYLTSEQPPKAPAISLDAGLVYVRRVQIT 893 I+CIE+ALDKLYHLK CCY+P +WL +YRKY+TS P +PAISLD GLVYV RVQ+T Sbjct: 318 SISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVT 377 Query: 894 PTKVYFSGPEINVSNRVLRNYLDHIDNFIRISFIDEDLEKLYSTDLSPRTASADGDNRTG 1073 P++VYF GPEINVSNRVLR++ IDNF+RISFIDEDL+K++STDLSPR +SA RT Sbjct: 378 PSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTR 437 Query: 1074 IFRRILSILRNGIVIGSKKFEFLAFSSSQLRENSAWMFASSLGLNASVIREWMGNFRQIR 1253 I+ RILS LRNGI+IG +KFEFLAFSSSQLRE+SAWMFAS GL A+ IREWMGNFR+IR Sbjct: 438 IYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIR 497 Query: 1254 NVAKYAARLGQSFGSSKET 1310 NVAKYAARLGQSF SSKET Sbjct: 498 NVAKYAARLGQSFSSSKET 516 >ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa] gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa] Length = 1133 Score = 568 bits (1464), Expect = e-159 Identities = 276/437 (63%), Positives = 339/437 (77%), Gaps = 2/437 (0%) Frame = +3 Query: 6 YLKARKMDLDIVQKPRTFMNSIEHTIIHFGCQISKEKFSVLWRARDATVKFGLGLRKLYF 185 YL AR MD DI+ +PR+F++++E +HFG Q SKEKFS +W + +V FGLG+RKL+F Sbjct: 76 YLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWSGNNVSVNFGLGMRKLHF 135 Query: 186 HLSHDHVEYKLELSYENIWQIHYRCPHGQTAKYLLIQLYGAPRIFEKI--DSGNVYEDHV 359 LSH+ EYKL L +ENIWQI P GQT KYLLIQLYGAPRI+E+ S NV+ED + Sbjct: 136 FLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPRIYERDVPSSSNVFEDPL 195 Query: 360 FTYYMDPPDDQWVRATDFTSSYCIGQSSALCLELPQGRELSDFGESFADFEAKDGRFSLE 539 Y+ D PD+QWVR TDFT S IG SS+LCLELP +L +F E+F ++ +G F LE Sbjct: 196 LNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLPNFNENFFYYKENEGTFVLE 255 Query: 540 SGSTFSKNLVLVPIIGPPQGIVLPYQILFKVSCLVQYGCLSGPTLDVRFFRLVDPANIDI 719 SG TFS+N LVPI+GP G+ LPY ILF+V+ LVQ GCL+G LD F+RLVDP + + Sbjct: 256 SGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGSMLDDIFYRLVDPNRMPV 315 Query: 720 ACIEYALDKLYHLKNCCYDPVKWLKYKYRKYLTSEQPPKAPAISLDAGLVYVRRVQITPT 899 CIEYAL+KLYHLK CCY+P KW +Y+KYLTS PP++P +SLDAGLVYV +VQITP Sbjct: 316 RCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPVLSLDAGLVYVYKVQITPC 375 Query: 900 KVYFSGPEINVSNRVLRNYLDHIDNFIRISFIDEDLEKLYSTDLSPRTASADGDNRTGIF 1079 KV+F GPE+NVSNRVLR Y + IDNF+R+SF+DE+LEK++STD+SPRT+S + RT I+ Sbjct: 376 KVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIHSTDVSPRTSSRNELRRTAIY 435 Query: 1080 RRILSILRNGIVIGSKKFEFLAFSSSQLRENSAWMFASSLGLNASVIREWMGNFRQIRNV 1259 RILS L+NGIVIG KKFEFLAFSSSQLRENS WMFAS LGL A+ IR WMG+F +IRNV Sbjct: 436 NRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGLTAADIRAWMGSFHKIRNV 495 Query: 1260 AKYAARLGQSFGSSKET 1310 A+YAARLGQSFGSS ET Sbjct: 496 ARYAARLGQSFGSSTET 512 >ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera] Length = 1121 Score = 568 bits (1464), Expect = e-159 Identities = 288/437 (65%), Positives = 346/437 (79%), Gaps = 1/437 (0%) Frame = +3 Query: 3 HYLKARKMDLDIVQKPRTFMNSIEHTIIHFGCQISKEKFSVLWRARDATVKFGLGLRKLY 182 +YLKAR+MDLDI+ KPR F++S++ +HFGCQ+S E+F VLW+A + +VKFG GLRK Y Sbjct: 75 NYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWKAINVSVKFGSGLRKFY 134 Query: 183 FHLSHDHVEYKLELSYENIWQIHYRCPHGQTAKYLLIQLYGAPRIFEKIDSGNVYEDHVF 362 F LSH EYKLELSYENIWQI + P GQ K+LLIQL GAP+I+EK + V Sbjct: 135 FFLSHGSEEYKLELSYENIWQIQLQHPRGQITKFLLIQLLGAPQIYEK-------DVPVL 187 Query: 363 TYYM-DPPDDQWVRATDFTSSYCIGQSSALCLELPQGRELSDFGESFADFEAKDGRFSLE 539 +YY + PDDQWVR DFT S IGQS ALCLELP G +L +F E+FA ++ DG+F LE Sbjct: 188 SYYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLPNFRENFAYYKENDGKFILE 247 Query: 540 SGSTFSKNLVLVPIIGPPQGIVLPYQILFKVSCLVQYGCLSGPTLDVRFFRLVDPANIDI 719 SGS++S NL LVPI+GPPQG LP+QILFK++ LVQ GCLSGPTLD FFRLVDP I Sbjct: 248 SGSSYSHNLHLVPILGPPQGSSLPFQILFKINTLVQNGCLSGPTLDTSFFRLVDPERFPI 307 Query: 720 ACIEYALDKLYHLKNCCYDPVKWLKYKYRKYLTSEQPPKAPAISLDAGLVYVRRVQITPT 899 + IE+AL+KLYHLK CCY+PV+WL +YR Y+ + +PAISLD GLVYVRRVQITP Sbjct: 308 SFIEHALEKLYHLKECCYEPVRWLSEQYRTYV-KKPVAGSPAISLDTGLVYVRRVQITPC 366 Query: 900 KVYFSGPEINVSNRVLRNYLDHIDNFIRISFIDEDLEKLYSTDLSPRTASADGDNRTGIF 1079 KVYF GPE+NVSNRVLRNY + IDNF+R+SF+DE+LEK++ST +SPR S +G RTG++ Sbjct: 367 KVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEKIHSTVISPR-MSKEG-RRTGVY 424 Query: 1080 RRILSILRNGIVIGSKKFEFLAFSSSQLRENSAWMFASSLGLNASVIREWMGNFRQIRNV 1259 RRILSIL+NGIVIG KKF+FLAFSSSQLR+NSAWMFAS GL A+ IR WMG+F QIRNV Sbjct: 425 RRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASRPGLTAAEIRSWMGDFSQIRNV 484 Query: 1260 AKYAARLGQSFGSSKET 1310 AKYAARLGQSF SSKET Sbjct: 485 AKYAARLGQSFSSSKET 501 >ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao] gi|590697846|ref|XP_007045553.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao] gi|590697850|ref|XP_007045554.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao] gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao] gi|508709488|gb|EOY01385.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao] gi|508709489|gb|EOY01386.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao] Length = 1109 Score = 553 bits (1424), Expect = e-155 Identities = 276/437 (63%), Positives = 340/437 (77%), Gaps = 2/437 (0%) Frame = +3 Query: 6 YLKARKMDLDIVQKPRTFMNSIEHTIIHFGCQISKEKFSVLWRARDATVKFGLGLRKLYF 185 YLKAR+M+ DIV KPRTF++++E +HFGCQ+S EKF VLW D TV FG+G+RKL F Sbjct: 75 YLKAREMENDIVPKPRTFLHTMEGVTLHFGCQVSNEKFYVLWEEVDVTVNFGMGMRKLQF 134 Query: 186 HLSHDHVEYKLELSYENIWQIHYRCPHGQTAKYLLIQLYGAPRIFEKI--DSGNVYEDHV 359 LSH VEY+L+L YENIWQI P QT+KYLLIQL+GAPRI+EK SG V+E+ + Sbjct: 135 LLSHHCVEYRLDLFYENIWQIELHRPRNQTSKYLLIQLFGAPRIYEKDVRSSGLVFENPL 194 Query: 360 FTYYMDPPDDQWVRATDFTSSYCIGQSSALCLELPQGRELSDFGESFADFEAKDGRFSLE 539 Y+MD PDDQWVR TDFT S CIGQSS LCLELP +L +F E+FA ++ +G+F LE Sbjct: 195 LNYFMDVPDDQWVRTTDFTQSSCIGQSSVLCLELPYYLQLPNFRENFAYYKESEGKFVLE 254 Query: 540 SGSTFSKNLVLVPIIGPPQGIVLPYQILFKVSCLVQYGCLSGPTLDVRFFRLVDPANIDI 719 SGS++S+NL LVPI+GP GI LPY+ILFK++ LVQ GC+ GP LD F+RLV+P ID Sbjct: 255 SGSSYSRNLNLVPIVGPSLGIDLPYEILFKINLLVQNGCIPGPALDANFYRLVNPCRIDK 314 Query: 720 ACIEYALDKLYHLKNCCYDPVKWLKYKYRKYLTSEQPPKAPAISLDAGLVYVRRVQITPT 899 I++AL+KLY+LK CC++P KWL +Y+ Y+ S++ P +P ISLD GLV VRRVQITP+ Sbjct: 315 VYIDHALEKLYYLKECCFEPSKWLLEQYKGYIASKKNPGSPVISLDDGLVNVRRVQITPS 374 Query: 900 KVYFSGPEINVSNRVLRNYLDHIDNFIRISFIDEDLEKLYSTDLSPRTASADGDNRTGIF 1079 +VYF GPEINVSNRVLR++ D IDNF+RI+F+DE+LEK++STDL R + T I+ Sbjct: 375 RVYFCGPEINVSNRVLRHFHDDIDNFLRITFVDEELEKIHSTDLLTR------NRITEIY 428 Query: 1080 RRILSILRNGIVIGSKKFEFLAFSSSQLRENSAWMFASSLGLNASVIREWMGNFRQIRNV 1259 RILS L+NGIVIG K+FEFLAFSSSQLRENSAWMFAS GL A+ IR WMG F +IRNV Sbjct: 429 GRILSTLKNGIVIGDKQFEFLAFSSSQLRENSAWMFASREGLTAADIRTWMGEFSKIRNV 488 Query: 1260 AKYAARLGQSFGSSKET 1310 AKYAARLGQSF SS ET Sbjct: 489 AKYAARLGQSFSSSTET 505 >ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera] Length = 1109 Score = 551 bits (1421), Expect = e-154 Identities = 280/436 (64%), Positives = 342/436 (78%) Frame = +3 Query: 3 HYLKARKMDLDIVQKPRTFMNSIEHTIIHFGCQISKEKFSVLWRARDATVKFGLGLRKLY 182 +YLKAR+MDLDI+ KPRTF++S++ +HFG Q+S E+F VLW+A + +VKFG GLRK Y Sbjct: 74 NYLKAREMDLDIIPKPRTFLHSMDRITLHFGYQMSNERFCVLWKAINVSVKFGFGLRKFY 133 Query: 183 FHLSHDHVEYKLELSYENIWQIHYRCPHGQTAKYLLIQLYGAPRIFEKIDSGNVYEDHVF 362 F LSH EYKLELS ENIWQI R P GQ K+LLIQL AP+I+EK S Sbjct: 134 FFLSHGSEEYKLELSCENIWQIQLREPRGQNTKFLLIQLLDAPQIYEKDVSA-------L 186 Query: 363 TYYMDPPDDQWVRATDFTSSYCIGQSSALCLELPQGRELSDFGESFADFEAKDGRFSLES 542 +Y+ + PDDQWVR DFT S IGQSSALCLELP G +L +F E+FA ++ D +F LES Sbjct: 187 SYFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQLPNFCENFARYKENDRKFILES 246 Query: 543 GSTFSKNLVLVPIIGPPQGIVLPYQILFKVSCLVQYGCLSGPTLDVRFFRLVDPANIDIA 722 G++FS NL LVPI+GPPQG LP++ILFK++ LVQ GCLSGPTLD FFR VDP I+I+ Sbjct: 247 GASFSGNLHLVPIVGPPQGSNLPFKILFKINTLVQNGCLSGPTLDTNFFRWVDPQRINIS 306 Query: 723 CIEYALDKLYHLKNCCYDPVKWLKYKYRKYLTSEQPPKAPAISLDAGLVYVRRVQITPTK 902 IE+AL+KLY+L+ CCY+PV+WL +YR Y+ S+Q +PAISLD GLVYVRRVQITP K Sbjct: 307 FIEHALEKLYYLEECCYEPVRWLHEQYRTYI-SKQVAGSPAISLDTGLVYVRRVQITPCK 365 Query: 903 VYFSGPEINVSNRVLRNYLDHIDNFIRISFIDEDLEKLYSTDLSPRTASADGDNRTGIFR 1082 VYF GPE+NVSNRVLRNY + IDNF+R+SF+DE+ EK++ST +SPR ++ RTG++R Sbjct: 366 VYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENSEKIHSTVISPRMSNE--GRRTGVYR 423 Query: 1083 RILSILRNGIVIGSKKFEFLAFSSSQLRENSAWMFASSLGLNASVIREWMGNFRQIRNVA 1262 RILSIL+NGIVIG KKF+FLA SSSQLR+NSAWMFAS GL A+ IR MG+F QIRNVA Sbjct: 424 RILSILQNGIVIGDKKFDFLAVSSSQLRDNSAWMFASRPGLTAADIRSRMGDFSQIRNVA 483 Query: 1263 KYAARLGQSFGSSKET 1310 KYAARLGQSF SSKET Sbjct: 484 KYAARLGQSFSSSKET 499 >ref|XP_004498237.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X2 [Cicer arietinum] Length = 1100 Score = 540 bits (1392), Expect = e-151 Identities = 270/440 (61%), Positives = 336/440 (76%), Gaps = 5/440 (1%) Frame = +3 Query: 6 YLKARKMDLDIVQKPRTFMNSIEHTIIHFGCQISKEKFSVLWRARDATVKFGLGLRKLYF 185 YLK R+M DIV PRT++ S++ ++FGCQISKE+FS+LWR RD +V G+RK F Sbjct: 81 YLKIREMVRDIVPNPRTYLESLDDVTLYFGCQISKERFSILWRKRDVSVDLSAGMRKWRF 140 Query: 186 HLSHDHVEYKLELSYENIWQIHYRCPHGQTAKYLLIQLYGAPRIFEKI----DSGNVYED 353 + HD+ ++K +LSYENIW+I P G+TAKYLLIQL GAPRIFE S NVYED Sbjct: 141 CMCHDNKKFKFDLSYENIWKIEQYQPWGKTAKYLLIQLIGAPRIFELYVPTSTSTNVYED 200 Query: 354 HVFTYYMDPPDDQWVRATDFTSSYCIGQSSALCLELPQGRELSDFGESFADFEAKDGRFS 533 + Y+ + PDDQW+RA DFT CIGQSSA+CLELP R+ + E F ++ +G+++ Sbjct: 201 PLKNYFKESPDDQWIRAVDFTPFNCIGQSSAICLELPCDRDFPNIREYFVHYQENEGQYT 260 Query: 534 LESGSTFSKNLVLVPIIGPPQGIVLPYQILFKVSCLVQYGCLSGPTLDVRFFRLVDPANI 713 LESGS FS NL +VPI+ PPQGI +P+ ILFKV+ LVQ+GCLSG LD F+ LVDP I Sbjct: 261 LESGSPFSHNLDVVPIVAPPQGIYIPFDILFKVNSLVQHGCLSGSELDNAFYCLVDPLRI 320 Query: 714 DIACIEYALDKLYHLKNCCYDPVKWLKYKYRKYLTSEQPPKAPAISLDAGLVYVRRVQIT 893 ++ IE+AL+K+Y+ K+ CY+P +WLK +YR YL S P ++P+ISLD GLVYVRRVQIT Sbjct: 321 NVDFIEHALEKMYYSKDFCYEPARWLKDQYRMYLNSNYPLQSPSISLDNGLVYVRRVQIT 380 Query: 894 PTKVYFSGPEINVSNRVLRNYLDHIDNFIRISFIDEDLEKLYSTDLSPRTASADGDNRTG 1073 P KVYF GPEINVSNRV+R++ +HIDNF+R+SF+DE+L+KLYSTDLS R + RT Sbjct: 381 PCKVYFCGPEINVSNRVVRHFHEHIDNFLRVSFVDEELDKLYSTDLSSRISVG---VRTE 437 Query: 1074 IFRRILSILRNGIVIGSKKFEFLAFSSSQLRENSAWMFA-SSLGLNASVIREWMGNFRQI 1250 ++ RILSILRNGIVIG KKFEFLAFSSSQLRENS WMFA ++ GL A IR WMG+F QI Sbjct: 438 VYNRILSILRNGIVIGDKKFEFLAFSSSQLRENSLWMFAPTATGLTAQFIRAWMGDFSQI 497 Query: 1251 RNVAKYAARLGQSFGSSKET 1310 RNVAKYAARLGQSFGSS ET Sbjct: 498 RNVAKYAARLGQSFGSSTET 517 >ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Cicer arietinum] Length = 1126 Score = 540 bits (1392), Expect = e-151 Identities = 270/440 (61%), Positives = 336/440 (76%), Gaps = 5/440 (1%) Frame = +3 Query: 6 YLKARKMDLDIVQKPRTFMNSIEHTIIHFGCQISKEKFSVLWRARDATVKFGLGLRKLYF 185 YLK R+M DIV PRT++ S++ ++FGCQISKE+FS+LWR RD +V G+RK F Sbjct: 81 YLKIREMVRDIVPNPRTYLESLDDVTLYFGCQISKERFSILWRKRDVSVDLSAGMRKWRF 140 Query: 186 HLSHDHVEYKLELSYENIWQIHYRCPHGQTAKYLLIQLYGAPRIFEKI----DSGNVYED 353 + HD+ ++K +LSYENIW+I P G+TAKYLLIQL GAPRIFE S NVYED Sbjct: 141 CMCHDNKKFKFDLSYENIWKIEQYQPWGKTAKYLLIQLIGAPRIFELYVPTSTSTNVYED 200 Query: 354 HVFTYYMDPPDDQWVRATDFTSSYCIGQSSALCLELPQGRELSDFGESFADFEAKDGRFS 533 + Y+ + PDDQW+RA DFT CIGQSSA+CLELP R+ + E F ++ +G+++ Sbjct: 201 PLKNYFKESPDDQWIRAVDFTPFNCIGQSSAICLELPCDRDFPNIREYFVHYQENEGQYT 260 Query: 534 LESGSTFSKNLVLVPIIGPPQGIVLPYQILFKVSCLVQYGCLSGPTLDVRFFRLVDPANI 713 LESGS FS NL +VPI+ PPQGI +P+ ILFKV+ LVQ+GCLSG LD F+ LVDP I Sbjct: 261 LESGSPFSHNLDVVPIVAPPQGIYIPFDILFKVNSLVQHGCLSGSELDNAFYCLVDPLRI 320 Query: 714 DIACIEYALDKLYHLKNCCYDPVKWLKYKYRKYLTSEQPPKAPAISLDAGLVYVRRVQIT 893 ++ IE+AL+K+Y+ K+ CY+P +WLK +YR YL S P ++P+ISLD GLVYVRRVQIT Sbjct: 321 NVDFIEHALEKMYYSKDFCYEPARWLKDQYRMYLNSNYPLQSPSISLDNGLVYVRRVQIT 380 Query: 894 PTKVYFSGPEINVSNRVLRNYLDHIDNFIRISFIDEDLEKLYSTDLSPRTASADGDNRTG 1073 P KVYF GPEINVSNRV+R++ +HIDNF+R+SF+DE+L+KLYSTDLS R + RT Sbjct: 381 PCKVYFCGPEINVSNRVVRHFHEHIDNFLRVSFVDEELDKLYSTDLSSRISVG---VRTE 437 Query: 1074 IFRRILSILRNGIVIGSKKFEFLAFSSSQLRENSAWMFA-SSLGLNASVIREWMGNFRQI 1250 ++ RILSILRNGIVIG KKFEFLAFSSSQLRENS WMFA ++ GL A IR WMG+F QI Sbjct: 438 VYNRILSILRNGIVIGDKKFEFLAFSSSQLRENSLWMFAPTATGLTAQFIRAWMGDFSQI 497 Query: 1251 RNVAKYAARLGQSFGSSKET 1310 RNVAKYAARLGQSFGSS ET Sbjct: 498 RNVAKYAARLGQSFGSSTET 517 >ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine max] gi|571439308|ref|XP_006574822.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X2 [Glycine max] gi|571439310|ref|XP_006574823.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X3 [Glycine max] Length = 1125 Score = 540 bits (1392), Expect = e-151 Identities = 263/438 (60%), Positives = 340/438 (77%), Gaps = 3/438 (0%) Frame = +3 Query: 6 YLKARKMDLDIVQKPRTFMNSIEHTIIHFGCQISKEKFSVLWRARDATVKFGLGLRKLYF 185 YLKAR+M+ DIV +PR F++S++ + FGCQISK +FSVLW+ +D V FG G+RK++F Sbjct: 79 YLKAREMERDIVPRPRVFLHSLDDVKLSFGCQISKGRFSVLWKKQDVIVNFGSGMRKMHF 138 Query: 186 HLSHDHVEYKLELSYENIWQIHYRCPHGQTAKYLLIQLYGAPRIFEKI--DSGNVYEDHV 359 SH++V+YKLELSYENIW+I P +T +YLLIQL GAPR+FE S N+++D + Sbjct: 139 LFSHNNVQYKLELSYENIWKIELHRPRNETTRYLLIQLLGAPRVFENDVPTSTNIFDDPL 198 Query: 360 FTYYMDPPDDQWVRATDFTSSYCIGQSSALCLELPQGRELSDFGESFADFEAKDGRFSLE 539 F ++ D PD+QW+RA DFT IGQSSA+CLELP GR+L +F E+FA +E + +++L+ Sbjct: 199 FNFFKDAPDEQWIRAIDFTPESRIGQSSAICLELPNGRQLPNFRENFAYYEESERQYTLQ 258 Query: 540 SGSTFSKNLVLVPIIGPPQGIVLPYQILFKVSCLVQYGCLSGPTLDVRFFRLVDPANIDI 719 +G FS+N LVPI+ PP G+ + Y ILFKV+ LVQ+ CL+GP LD F+RLVDP + Sbjct: 259 TGVPFSQNWGLVPIVAPPLGVKISYDILFKVNSLVQHACLAGPALDGDFYRLVDPRRMPR 318 Query: 720 ACIEYALDKLYHLKNCCYDPVKWLKYKYRKYLTSEQPPKAPAISLDAGLVYVRRVQITPT 899 IEYAL+K+Y+ K CY+P KWL +Y+ YL S+ P++PAISLD GLVYVRRVQITP Sbjct: 319 EFIEYALEKIYYSKEFCYEPTKWLTDQYKTYLESKNHPRSPAISLDTGLVYVRRVQITPC 378 Query: 900 KVYFSGPEINVSNRVLRNYLDHIDNFIRISFIDEDLEKLYSTDLSPRTASADGDNRTGIF 1079 KVYF GPE+NVSNRVLR++ +HIDNF+R+SF+DE+L+KL+STDLS R+ + +T I+ Sbjct: 379 KVYFCGPEMNVSNRVLRHFREHIDNFLRVSFVDEELDKLFSTDLSSRSQ----NKKTEIY 434 Query: 1080 RRILSILRNGIVIGSKKFEFLAFSSSQLRENSAWMFA-SSLGLNASVIREWMGNFRQIRN 1256 RILSIL+NGIV+G KKFEFLAFSSSQLRENS WMFA + G A+ IR+WMGNF QIRN Sbjct: 435 TRILSILKNGIVVGDKKFEFLAFSSSQLRENSLWMFAPTETGCTAAYIRKWMGNFSQIRN 494 Query: 1257 VAKYAARLGQSFGSSKET 1310 VAKYAARLGQSFGSS ET Sbjct: 495 VAKYAARLGQSFGSSTET 512 >gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus guttatus] Length = 1110 Score = 539 bits (1388), Expect = e-150 Identities = 266/435 (61%), Positives = 337/435 (77%) Frame = +3 Query: 6 YLKARKMDLDIVQKPRTFMNSIEHTIIHFGCQISKEKFSVLWRARDATVKFGLGLRKLYF 185 YLKA + D+DIVQ PRTF + +E+ ++FGCQIS KFSVLW+ TVKFG G++K++F Sbjct: 75 YLKAYESDIDIVQNPRTFAHEMENVTLNFGCQISPHKFSVLWKGESVTVKFGTGMKKMHF 134 Query: 186 HLSHDHVEYKLELSYENIWQIHYRCPHGQTAKYLLIQLYGAPRIFEKIDSGNVYEDHVFT 365 L H+ VEYK++LSYENIWQI +GQ++K L+IQL+GAPRI++K+ SG+VY + Sbjct: 135 FLRHNSVEYKMQLSYENIWQIVLYNSYGQSSKLLVIQLFGAPRIYKKL-SGSVY-----S 188 Query: 366 YYMDPPDDQWVRATDFTSSYCIGQSSALCLELPQGRELSDFGESFADFEAKDGRFSLESG 545 Y+M DDQWVR TDFT S IGQSS+LCL+LP G L +F ++F ++ + F LE+G Sbjct: 189 YFMVTQDDQWVRTTDFTQSL-IGQSSSLCLQLPYGMRLPNFRDNFLYYKESETPFRLETG 247 Query: 546 STFSKNLVLVPIIGPPQGIVLPYQILFKVSCLVQYGCLSGPTLDVRFFRLVDPANIDIAC 725 FS N LVPI+ PP I LPY +LFKV LVQ GCL GP LD FF LV+PA DI Sbjct: 248 VPFSHNSDLVPIVRPPIDIKLPYTLLFKVCSLVQTGCLPGPKLDRSFFDLVNPAKHDIRY 307 Query: 726 IEYALDKLYHLKNCCYDPVKWLKYKYRKYLTSEQPPKAPAISLDAGLVYVRRVQITPTKV 905 IE+AL+KLY+LK CCY+P WLK +Y +Y TS++ PK+PAI LD GLVYV RVQ+TPT+V Sbjct: 308 IEHALEKLYYLKECCYNPAAWLKEQYERYRTSKEHPKSPAICLDDGLVYVHRVQVTPTRV 367 Query: 906 YFSGPEINVSNRVLRNYLDHIDNFIRISFIDEDLEKLYSTDLSPRTASADGDNRTGIFRR 1085 YFSGPE+NVSNRVLR+Y D+IDNF+R+SF+DE+ +K+YSTDLSPR A+ D + RT ++ R Sbjct: 368 YFSGPEVNVSNRVLRHYRDYIDNFLRVSFVDEEWDKMYSTDLSPRVAAGDENKRTKLYER 427 Query: 1086 ILSILRNGIVIGSKKFEFLAFSSSQLRENSAWMFASSLGLNASVIREWMGNFRQIRNVAK 1265 ++SILR+G+ IG +KF+FLAFSSSQLR+NS WMFA + GLNA IREWMG+F IRNVAK Sbjct: 428 VISILRDGVRIGDRKFDFLAFSSSQLRDNSLWMFAPTDGLNADGIREWMGDFSSIRNVAK 487 Query: 1266 YAARLGQSFGSSKET 1310 YAARLGQSFGSS ET Sbjct: 488 YAARLGQSFGSSTET 502 >gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum] Length = 1110 Score = 536 bits (1380), Expect = e-149 Identities = 267/437 (61%), Positives = 337/437 (77%), Gaps = 2/437 (0%) Frame = +3 Query: 6 YLKARKMDLDIVQKPRTFMNSIEHTIIHFGCQISKEKFSVLWRARDATVKFGLGLRKLYF 185 YLKAR+M+ DIV KPR F++++E ++FGCQ+S+EKF VLW+A + T+ FG G+RKL F Sbjct: 75 YLKAREMETDIVPKPRVFLHTMERVTVNFGCQVSEEKFYVLWKADNVTLNFGTGMRKLEF 134 Query: 186 HLSHDHVEYKLELSYENIWQIHYRCPHGQTAKYLLIQLYGAPRIFEKIDSGN--VYEDHV 359 LS+ +YKLEL YENIWQI RCPH QT+K+LLIQL+GAPRI+EK + V++D + Sbjct: 135 LLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPRIYEKEVPASECVFDDPL 194 Query: 360 FTYYMDPPDDQWVRATDFTSSYCIGQSSALCLELPQGRELSDFGESFADFEAKDGRFSLE 539 Y+ D PDDQWVR TDFT S CIGQSS L LELP +L +F E+FA ++ +GR LE Sbjct: 195 LNYFKDMPDDQWVRTTDFTRSNCIGQSSVLWLELPHNLQLPNFRENFAYYKENEGRLVLE 254 Query: 540 SGSTFSKNLVLVPIIGPPQGIVLPYQILFKVSCLVQYGCLSGPTLDVRFFRLVDPANIDI 719 SGS++S NL LVPI+ P + I LP++ILFKV+ LVQ GC+ GP LD F+RLVDP + Sbjct: 255 SGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGPALDDTFYRLVDPCRMHK 314 Query: 720 ACIEYALDKLYHLKNCCYDPVKWLKYKYRKYLTSEQPPKAPAISLDAGLVYVRRVQITPT 899 I++AL+KLY+L+ CCY+P +WL +Y+ + S + +P ISLD GLVYVRRVQITP+ Sbjct: 315 VYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTISLDEGLVYVRRVQITPS 374 Query: 900 KVYFSGPEINVSNRVLRNYLDHIDNFIRISFIDEDLEKLYSTDLSPRTASADGDNRTGIF 1079 +VYF GPEINVSNRVLR + + IDNF+RISF+DE+LEK++ST++ R RTGI+ Sbjct: 375 RVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTNVQAR------GRRTGIY 428 Query: 1080 RRILSILRNGIVIGSKKFEFLAFSSSQLRENSAWMFASSLGLNASVIREWMGNFRQIRNV 1259 +RILS LRNGIVIG+K+FEFLAFSSSQLRENSAWMFAS GL A+ IR WMGNF +IRNV Sbjct: 429 KRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLTAADIRSWMGNFSKIRNV 488 Query: 1260 AKYAARLGQSFGSSKET 1310 AKYAARLGQSF SS ET Sbjct: 489 AKYAARLGQSFSSSTET 505 >gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum] Length = 1110 Score = 535 bits (1379), Expect = e-149 Identities = 266/437 (60%), Positives = 336/437 (76%), Gaps = 2/437 (0%) Frame = +3 Query: 6 YLKARKMDLDIVQKPRTFMNSIEHTIIHFGCQISKEKFSVLWRARDATVKFGLGLRKLYF 185 YLKAR+M+ DIV KPR F++++E ++F C +S+EKF VLW+A + T+ FG G+RKL F Sbjct: 75 YLKAREMETDIVPKPRVFLHTMERVTVNFDCHVSEEKFYVLWKADNVTLNFGTGMRKLEF 134 Query: 186 HLSHDHVEYKLELSYENIWQIHYRCPHGQTAKYLLIQLYGAPRIFEKIDSGN--VYEDHV 359 LS+ +YKLEL YENIWQI RCPH QT+K+LLIQL+GAPRI+EK + V++D + Sbjct: 135 LLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPRIYEKEVPASECVFDDPL 194 Query: 360 FTYYMDPPDDQWVRATDFTSSYCIGQSSALCLELPQGRELSDFGESFADFEAKDGRFSLE 539 Y+ D PDDQWVR TDFT S CIGQSS LCLELP +L +F E+FA ++ +GR LE Sbjct: 195 LNYFKDMPDDQWVRTTDFTRSNCIGQSSVLCLELPHNLQLPNFRENFAYYKENEGRLVLE 254 Query: 540 SGSTFSKNLVLVPIIGPPQGIVLPYQILFKVSCLVQYGCLSGPTLDVRFFRLVDPANIDI 719 SGS++S NL LVPI+ P + I LP++ILFKV+ LVQ GC+ GP LD F+RLVDP + Sbjct: 255 SGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGPALDDTFYRLVDPCRMHK 314 Query: 720 ACIEYALDKLYHLKNCCYDPVKWLKYKYRKYLTSEQPPKAPAISLDAGLVYVRRVQITPT 899 I++AL+KLY+L+ CCY+P +WL +Y+ + S + +P ISLD GLVYVRRVQITP+ Sbjct: 315 VYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTISLDEGLVYVRRVQITPS 374 Query: 900 KVYFSGPEINVSNRVLRNYLDHIDNFIRISFIDEDLEKLYSTDLSPRTASADGDNRTGIF 1079 +VYF GPEINVSNRVLR + + IDNF+RISF+DE+LEK++ST++ R RTGI+ Sbjct: 375 RVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTNVQAR------GRRTGIY 428 Query: 1080 RRILSILRNGIVIGSKKFEFLAFSSSQLRENSAWMFASSLGLNASVIREWMGNFRQIRNV 1259 +RILS LRNGIVIG+K+FEFLAFSSSQLRENSAWMFAS GL A+ IR WMGNF +IRNV Sbjct: 429 KRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLTAADIRSWMGNFSKIRNV 488 Query: 1260 AKYAARLGQSFGSSKET 1310 AKYAARLGQSF SS ET Sbjct: 489 AKYAARLGQSFSSSTET 505 >ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca subsp. vesca] Length = 1119 Score = 531 bits (1369), Expect = e-148 Identities = 270/438 (61%), Positives = 329/438 (75%), Gaps = 3/438 (0%) Frame = +3 Query: 6 YLKARKMDLDIVQKPRTFMNSIEHTIIHFGCQISKEKFSVLWRARDATVKFGLGLRKLYF 185 YL AR DIV KPRTF++S+ ++H GCQ++K+KFSVLW + +V FG G+R L F Sbjct: 75 YLNARPAH-DIVPKPRTFLHSLRDLVLHVGCQVAKDKFSVLWGTAEVSVDFGFGMRNLQF 133 Query: 186 HLSHDHVEYKLELSYENIWQIHYRCPHGQTAKYLLIQLYGAPRIFEK---IDSGNVYEDH 356 L + Y+L+LSYENIWQI G++AKYL+IQLYG PRI+++ GN YED Sbjct: 134 RLLYRQKVYRLQLSYENIWQIELHHQRGRSAKYLVIQLYGNPRIYQQEVCSSGGNGYED- 192 Query: 357 VFTYYMDPPDDQWVRATDFTSSYCIGQSSALCLELPQGRELSDFGESFADFEAKDGRFSL 536 Y+ DP D WVR TDFT CIGQSS+LCL L EL DF E+FA ++ DG+F L Sbjct: 193 -MNYFRDP--DDWVRTTDFTPGSCIGQSSSLCLVLTSDGELPDFEENFAYYKKTDGQFIL 249 Query: 537 ESGSTFSKNLVLVPIIGPPQGIVLPYQILFKVSCLVQYGCLSGPTLDVRFFRLVDPANID 716 E+GSTFS+N LVPI+G P GI LPY ILFK++ LVQ GCLSGPTLD F+RLVDP I Sbjct: 250 ENGSTFSRNRDLVPIVGSPAGIDLPYDILFKINLLVQQGCLSGPTLDNNFYRLVDPRRIS 309 Query: 717 IACIEYALDKLYHLKNCCYDPVKWLKYKYRKYLTSEQPPKAPAISLDAGLVYVRRVQITP 896 CIE+ALDKL +LK CY+P WL +YRKY+ S++PPK ISLD+GLVYVRRVQITP Sbjct: 310 RPCIEFALDKLSNLKESCYEPAVWLNEEYRKYMMSKKPPKPALISLDSGLVYVRRVQITP 369 Query: 897 TKVYFSGPEINVSNRVLRNYLDHIDNFIRISFIDEDLEKLYSTDLSPRTASADGDNRTGI 1076 +KVYFSGPE+NVSNR+LR Y IDNF+R+SF+DE++EKLYSTDLSPRT++ +T I Sbjct: 370 SKVYFSGPEVNVSNRILRQYSSDIDNFLRVSFVDEEMEKLYSTDLSPRTST----RKTRI 425 Query: 1077 FRRILSILRNGIVIGSKKFEFLAFSSSQLRENSAWMFASSLGLNASVIREWMGNFRQIRN 1256 + R+LS+LR+GIV+G KKFEFLAFSSSQLRENS WMFA + +A IR MG+FRQIRN Sbjct: 426 YNRVLSVLRDGIVVGKKKFEFLAFSSSQLRENSLWMFAPTDEDSADTIRAGMGDFRQIRN 485 Query: 1257 VAKYAARLGQSFGSSKET 1310 VAKYAARLGQSFGSS ET Sbjct: 486 VAKYAARLGQSFGSSTET 503 >gb|EXB32317.1| RNA-dependent RNA polymerase 1 [Morus notabilis] Length = 862 Score = 524 bits (1349), Expect = e-146 Identities = 260/435 (59%), Positives = 322/435 (74%) Frame = +3 Query: 6 YLKARKMDLDIVQKPRTFMNSIEHTIIHFGCQISKEKFSVLWRARDATVKFGLGLRKLYF 185 YLKAR ++V+KP F+ S++ +HFGCQ+ KEKFSVLW + VKFG G RKLYF Sbjct: 77 YLKARDWSTEVVRKPEVFLCSMDDVTLHFGCQVLKEKFSVLWERENVCVKFGEGQRKLYF 136 Query: 186 HLSHDHVEYKLELSYENIWQIHYRCPHGQTAKYLLIQLYGAPRIFEKIDSGNVYEDHVFT 365 LS+ V+YKLE+SYENIWQI HG+T+K+LL+QL GAPRIF+K++ Sbjct: 137 FLSYGSVDYKLEISYENIWQIKLHRMHGETSKFLLLQLLGAPRIFQKVNRC--------- 187 Query: 366 YYMDPPDDQWVRATDFTSSYCIGQSSALCLELPQGRELSDFGESFADFEAKDGRFSLESG 545 W R DFT S CIGQSSALCLE+P R+L + + F ++ +G+FSL+ G Sbjct: 188 ---------WERDVDFTPSCCIGQSSALCLEIPNWRQLPNLRDVFVYYKEDEGQFSLQQG 238 Query: 546 STFSKNLVLVPIIGPPQGIVLPYQILFKVSCLVQYGCLSGPTLDVRFFRLVDPANIDIAC 725 FS + LVP++ PP+GI+LPY+ILFKV+ LVQ+GCL LD+ FFRLVDP+ I + C Sbjct: 239 CPFSSSSDLVPMVVPPKGIILPYKILFKVNSLVQHGCLPAEVLDLNFFRLVDPSRIPLEC 298 Query: 726 IEYALDKLYHLKNCCYDPVKWLKYKYRKYLTSEQPPKAPAISLDAGLVYVRRVQITPTKV 905 IE ALDKLYHLK+CCYDP++WLK +Y KY TS Q PK P I+L+ GLVYV RVQ+TPTKV Sbjct: 299 IESALDKLYHLKDCCYDPLRWLKKQYIKYNTSGQIPKMPTIALEDGLVYVHRVQVTPTKV 358 Query: 906 YFSGPEINVSNRVLRNYLDHIDNFIRISFIDEDLEKLYSTDLSPRTASADGDNRTGIFRR 1085 YF GPEIN+SNRVLRNY IDNF+R+SF+DE+L+KL STDL R +SA+G RT ++ R Sbjct: 359 YFCGPEINLSNRVLRNYPKDIDNFLRVSFVDENLDKLSSTDLCARGSSANGKRRTRLYDR 418 Query: 1086 ILSILRNGIVIGSKKFEFLAFSSSQLRENSAWMFASSLGLNASVIREWMGNFRQIRNVAK 1265 IL LRNGI+IG KKFEFLAFSSSQL+E S WMFAS GL A+ IR WMG+F I+NVA+ Sbjct: 419 ILFTLRNGILIGDKKFEFLAFSSSQLKEGSLWMFASRDGLTAADIRNWMGDFHDIKNVAR 478 Query: 1266 YAARLGQSFGSSKET 1310 YAARLGQSFGSS ET Sbjct: 479 YAARLGQSFGSSHET 493 >emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum] Length = 1116 Score = 518 bits (1335), Expect = e-144 Identities = 258/437 (59%), Positives = 338/437 (77%), Gaps = 2/437 (0%) Frame = +3 Query: 6 YLKARKMDLDIVQKPRTFMNSIEHTIIHFGCQISKEKFSVLWRARDATVKFGLGLRKLYF 185 YLKA +M DIVQ PRT++ ++ ++FGCQIS +KF+VL ++D ++KFG+GL+K+YF Sbjct: 75 YLKAWEMKTDIVQ-PRTYVEHMDGVTLNFGCQISDKKFAVLG-SKDVSIKFGIGLKKIYF 132 Query: 186 HLSHDHVEYKLELSYENIWQIHYRCPHGQTAKYLLIQLYGAPRIFEKIDSGNVYEDHVFT 365 LSH +YKL+LSYENIWQ+ P+GQ A++LL+QL+GAPRI++++ ED ++ Sbjct: 133 FLSHASADYKLQLSYENIWQVVLHRPYGQNAQFLLLQLFGAPRIYKRL------EDSCYS 186 Query: 366 YYMDPPDDQWVRATDFTSSYCIGQSSALCLELPQGRELSDFGESFADFEAKDGRFSLESG 545 ++ + PDDQWVR TDFT S+ IG SS+LCLE G +L +F ESF ++ +F L++G Sbjct: 187 FFKETPDDQWVRTTDFTPSW-IGLSSSLCLEFRNGVQLPNFSESFFYYKESMNQFILQTG 245 Query: 546 STFS--KNLVLVPIIGPPQGIVLPYQILFKVSCLVQYGCLSGPTLDVRFFRLVDPANIDI 719 TFS + L LVPI+ P+GI LPY+ILFK+S L+Q+GC G L+ FF+LVDP +I Sbjct: 246 FTFSFSQKLALVPIVHLPEGIELPYKILFKISSLIQHGCFPGLALNFNFFQLVDPRRRNI 305 Query: 720 ACIEYALDKLYHLKNCCYDPVKWLKYKYRKYLTSEQPPKAPAISLDAGLVYVRRVQITPT 899 ACIE+AL+KLY+LK CCYDPV+WL +Y +YL Q PK+P I+LD GLVYVRRV +TP Sbjct: 306 ACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKGRQLPKSPPITLDDGLVYVRRVVVTPC 365 Query: 900 KVYFSGPEINVSNRVLRNYLDHIDNFIRISFIDEDLEKLYSTDLSPRTASADGDNRTGIF 1079 KVYF GPE+NVSNRVLRNY + I+NF+R+SF+DE+ EK++STDL PR ++ +G RT I+ Sbjct: 366 KVYFCGPEVNVSNRVLRNYSEDINNFLRVSFVDEEWEKIHSTDLLPRASTGNG-TRTDIY 424 Query: 1080 RRILSILRNGIVIGSKKFEFLAFSSSQLRENSAWMFASSLGLNASVIREWMGNFRQIRNV 1259 RILS LRNG +IG K+FEFLAFSSSQLR+NS WMFAS GL A+ IR WMG+FRQIRNV Sbjct: 425 ERILSTLRNGFIIGDKRFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFRQIRNV 484 Query: 1260 AKYAARLGQSFGSSKET 1310 AKYAARLGQSFGSS+ET Sbjct: 485 AKYAARLGQSFGSSRET 501 >ref|NP_001267682.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus] gi|316989901|gb|ADU77016.1| RNA-dependent RNA polymerase 1b [Cucumis sativus] Length = 1115 Score = 516 bits (1328), Expect = e-143 Identities = 254/436 (58%), Positives = 322/436 (73%), Gaps = 1/436 (0%) Frame = +3 Query: 6 YLKARKMDLDIVQKPRTFMNSIEHTIIHFGCQISKEKFSVLWRARDATVKFGLGLRKLYF 185 YLKAR+M DI+ P F + + +H GCQISKE FSVLW + +V FG LRKLYF Sbjct: 76 YLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTESNVSVDFGFELRKLYF 135 Query: 186 HLSHDHVEYKLELSYENIWQIHYRCPHGQTAKYLLIQLYGAPRIFEK-IDSGNVYEDHVF 362 +S+ V+Y L L YENIWQ+ PHGQ+ YLLIQL+GAPRI+E+ S + + F Sbjct: 136 FISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIYERDARSFGLITEDPF 195 Query: 363 TYYMDPPDDQWVRATDFTSSYCIGQSSALCLELPQGRELSDFGESFADFEAKDGRFSLES 542 + D QW RATDFT S IGQS+ALCLE+P GR+L +F + FA F+ G+F+L S Sbjct: 196 LNFSTEIDTQWFRATDFTPSCSIGQSAALCLEIPYGRQLPNFHDKFAYFKEIKGKFTLVS 255 Query: 543 GSTFSKNLVLVPIIGPPQGIVLPYQILFKVSCLVQYGCLSGPTLDVRFFRLVDPANIDIA 722 GST+S N+ LVP++ PP+ I LPY ILFK++ LVQ GCL GP LD+ F+++VD + A Sbjct: 256 GSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPALDISFYQMVDSQIYNTA 315 Query: 723 CIEYALDKLYHLKNCCYDPVKWLKYKYRKYLTSEQPPKAPAISLDAGLVYVRRVQITPTK 902 I++AL KL HLK CCY+P KWL +YRKY + PP+ P ++L+ GLVYV RVQ+TP K Sbjct: 316 VIDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPILTLNEGLVYVHRVQVTPCK 375 Query: 903 VYFSGPEINVSNRVLRNYLDHIDNFIRISFIDEDLEKLYSTDLSPRTASADGDNRTGIFR 1082 VYF GPE+N+SNRVLR Y D+IDNF+R+SF+DE+L K+YST+LSPR +S+ D +T IF+ Sbjct: 376 VYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTELSPRASSSLEDGKTKIFK 435 Query: 1083 RILSILRNGIVIGSKKFEFLAFSSSQLRENSAWMFASSLGLNASVIREWMGNFRQIRNVA 1262 RILS+LR+GI IG KKFEFLA+SSSQLREN+AWMFA L A+ IR+WMG+F IRNVA Sbjct: 436 RILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAKIRQWMGDFHNIRNVA 495 Query: 1263 KYAARLGQSFGSSKET 1310 KYAARLGQSFGSS ET Sbjct: 496 KYAARLGQSFGSSTET 511 >ref|XP_002315849.2| hypothetical protein POPTR_0010s11560g [Populus trichocarpa] gi|550329580|gb|EEF02020.2| hypothetical protein POPTR_0010s11560g [Populus trichocarpa] Length = 1119 Score = 509 bits (1312), Expect = e-142 Identities = 254/439 (57%), Positives = 327/439 (74%), Gaps = 4/439 (0%) Frame = +3 Query: 6 YLKARKMDLDIVQKPRTFMN--SIEHTIIHFGCQISKEKFSVLWRARDATVKFGLGLRKL 179 YLKAR + D V + F S+++ +HFGCQ+SKEKFSVLW +D +VKFG+ LRK Sbjct: 78 YLKARDVYRDTVPMRKAFQTQYSMDNITLHFGCQVSKEKFSVLWTQKDVSVKFGVELRKF 137 Query: 180 YFHLSHDHVEYKLELSYENIWQIHYRCPHGQTAKYLLIQLYGAPRIFEKIDSGNVYEDHV 359 +F L+H YKLELSYENI+QI P G+T KYLL+Q+ G P+IF+K + + Sbjct: 138 HFFLTHLSKNYKLELSYENIFQIELHRPRGKTKKYLLVQMLGGPKIFKK-------DTNK 190 Query: 360 FTYYMDPPDDQWVRATDFTSSYCIGQSSALCLELPQGRELSDFGESFADFEAKDGRFSLE 539 + + + DDQWVR DF+ SYCIGQSSALCLELP +L +F E+F ++ +G F LE Sbjct: 191 LSNFKEATDDQWVRDVDFSPSYCIGQSSALCLELPPNSQLPNFQENFVCYKEDEGHFILE 250 Query: 540 SGSTFSKNLVLVPIIGPPQGIVLPYQILFKVSCLVQYGCLSGPTLDVRFFRLVDPANIDI 719 GSTF LVPI+ QG LPY I+FKV+ LVQ+GCL GP LD RFFRL++P+ I I Sbjct: 251 KGSTFCCKSDLVPILSAAQGSELPYDIVFKVNSLVQHGCLPGPALDARFFRLINPSKIRI 310 Query: 720 A--CIEYALDKLYHLKNCCYDPVKWLKYKYRKYLTSEQPPKAPAISLDAGLVYVRRVQIT 893 A I++AL+KL HLK CCYDP +WL+ +Y+KYLT+ + P PAI++D GLV++RRVQIT Sbjct: 311 AHAYIQHALEKLSHLKECCYDPARWLREQYQKYLTTGRLPTPPAIAVDDGLVFLRRVQIT 370 Query: 894 PTKVYFSGPEINVSNRVLRNYLDHIDNFIRISFIDEDLEKLYSTDLSPRTASADGDNRTG 1073 PTK+YF GP++N+SNRVLR Y IDNF+R+SF+DEDL+KL+S ++SPRT SA +T Sbjct: 371 PTKLYFCGPDVNLSNRVLRKYPGDIDNFLRVSFVDEDLDKLFSANISPRTFSAIEGRQTN 430 Query: 1074 IFRRILSILRNGIVIGSKKFEFLAFSSSQLRENSAWMFASSLGLNASVIREWMGNFRQIR 1253 I++RILS+ RNGI IGSKKFEFL FS SQ+RE+S WMFAS GL A+ IREWMG+FR+I+ Sbjct: 431 IYQRILSVQRNGITIGSKKFEFLGFSQSQVRESSLWMFASRPGLTAADIREWMGDFREIK 490 Query: 1254 NVAKYAARLGQSFGSSKET 1310 NVAKYAARLGQSF SS+E+ Sbjct: 491 NVAKYAARLGQSFSSSRES 509 >gb|ABO93004.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum] Length = 841 Score = 509 bits (1311), Expect = e-141 Identities = 254/437 (58%), Positives = 333/437 (76%), Gaps = 2/437 (0%) Frame = +3 Query: 6 YLKARKMDLDIVQKPRTFMNSIEHTIIHFGCQISKEKFSVLWRARDATVKFGLGLRKLYF 185 YLKA +M DIVQ R +++ ++ ++FGCQIS +KF+VL + + ++KFG+GL+K +F Sbjct: 75 YLKAWEMKTDIVQL-RAYVDHMDGITLNFGCQISDDKFAVLG-STEVSIKFGIGLKKFFF 132 Query: 186 HLSHDHVEYKLELSYENIWQIHYRCPHGQTAKYLLIQLYGAPRIFEKIDSGNVYEDHVFT 365 LS +YKL+LSYENIWQ+ P+GQ A++LLIQL+GAPRI++++ E+ ++ Sbjct: 133 FLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIYKRL------ENSCYS 186 Query: 366 YYMDPPDDQWVRATDFTSSYCIGQSSALCLELPQGRELSDFGESFADFEAKDGRFSLESG 545 ++ + PDDQWVR TDF S+ IG SS+LCL+ +G L +F ESF + ++ +L++G Sbjct: 187 FFKETPDDQWVRTTDFAPSW-IGLSSSLCLQFRRGVHLPNFQESFFHYTERENNITLQTG 245 Query: 546 STF--SKNLVLVPIIGPPQGIVLPYQILFKVSCLVQYGCLSGPTLDVRFFRLVDPANIDI 719 TF S+ LVP + PP+GI +PY+ILFK+S LVQ+GC+ GP L+V FFRLVDP ++ Sbjct: 246 FTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQRRNV 305 Query: 720 ACIEYALDKLYHLKNCCYDPVKWLKYKYRKYLTSEQPPKAPAISLDAGLVYVRRVQITPT 899 ACIE AL+KLY+LK CCYDPV+WL +Y YL QPPK+P+I+LD GLVYVRRV +TP Sbjct: 306 ACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPC 365 Query: 900 KVYFSGPEINVSNRVLRNYLDHIDNFIRISFIDEDLEKLYSTDLSPRTASADGDNRTGIF 1079 KVYF GPE+NVSNRVLRNY + IDNF+R+SF+DE+ EKLYSTDL P+ ++ +G RT I+ Sbjct: 366 KVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGNG-IRTNIY 424 Query: 1080 RRILSILRNGIVIGSKKFEFLAFSSSQLRENSAWMFASSLGLNASVIREWMGNFRQIRNV 1259 RILS LR G VIG KKFEFLAFSSSQLR+NS WMFAS GL A+ IR WMG+F QI+NV Sbjct: 425 ERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNV 484 Query: 1260 AKYAARLGQSFGSSKET 1310 AKYAARLGQSFGSSKET Sbjct: 485 AKYAARLGQSFGSSKET 501 >gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum] Length = 1115 Score = 508 bits (1309), Expect = e-141 Identities = 252/437 (57%), Positives = 334/437 (76%), Gaps = 2/437 (0%) Frame = +3 Query: 6 YLKARKMDLDIVQKPRTFMNSIEHTIIHFGCQISKEKFSVLWRARDATVKFGLGLRKLYF 185 YLKA +M DIVQ R +++ ++ ++FGCQIS++KF+VL + + ++KFG+GL+K +F Sbjct: 75 YLKAWEMKTDIVQL-RAYVDHMDGITLNFGCQISEDKFAVLG-STEVSIKFGIGLKKFFF 132 Query: 186 HLSHDHVEYKLELSYENIWQIHYRCPHGQTAKYLLIQLYGAPRIFEKIDSGNVYEDHVFT 365 LS +YKL+LSYENIWQ+ P+GQ A++LLIQL+GAPRI++++ E+ ++ Sbjct: 133 FLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIYKRL------ENSCYS 186 Query: 366 YYMDPPDDQWVRATDFTSSYCIGQSSALCLELPQGRELSDFGESFADFEAKDGRFSLESG 545 ++ + PDDQWVR TDFT S+ IG SS+LCL+ +G L +F ESF + ++ +L++G Sbjct: 187 FFKETPDDQWVRTTDFTPSW-IGLSSSLCLQFRRGVHLPNFQESFFHYAERENNITLQTG 245 Query: 546 STF--SKNLVLVPIIGPPQGIVLPYQILFKVSCLVQYGCLSGPTLDVRFFRLVDPANIDI 719 TF S+ LVP + PP+GI +PY+ILFK+S LVQ+GC+ GP L+V FFRLVDP ++ Sbjct: 246 FTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQRRNV 305 Query: 720 ACIEYALDKLYHLKNCCYDPVKWLKYKYRKYLTSEQPPKAPAISLDAGLVYVRRVQITPT 899 ACIE AL+KLY+LK CCYDPV+WL +Y YL QPPK+P+I+LD GLVYVRRV +TP Sbjct: 306 ACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPC 365 Query: 900 KVYFSGPEINVSNRVLRNYLDHIDNFIRISFIDEDLEKLYSTDLSPRTASADGDNRTGIF 1079 KVYF GPE+NVSNRVLRNY + IDNF+R+SF+DE+ EKLYST+L P+ ++ +G RT I+ Sbjct: 366 KVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNG-IRTNIY 424 Query: 1080 RRILSILRNGIVIGSKKFEFLAFSSSQLRENSAWMFASSLGLNASVIREWMGNFRQIRNV 1259 RILS LR G VIG KKFEFLAFSSSQLR+NS WMFAS GL + IR WMG+F QI+NV Sbjct: 425 ERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRRGLTTNDIRSWMGDFSQIKNV 484 Query: 1260 AKYAARLGQSFGSSKET 1310 AKYAARLGQSFGSS+ET Sbjct: 485 AKYAARLGQSFGSSRET 501 >gb|AHL27585.1| RNA-dependent RNA polymerase 2 [Salvia miltiorrhiza] Length = 1101 Score = 508 bits (1307), Expect = e-141 Identities = 252/435 (57%), Positives = 321/435 (73%) Frame = +3 Query: 6 YLKARKMDLDIVQKPRTFMNSIEHTIIHFGCQISKEKFSVLWRARDATVKFGLGLRKLYF 185 YLKA + D + V R+FM+ ++ ++FGCQ+SK++FSVLWRA D +VKFG L K++ Sbjct: 79 YLKAFEQDTNFVNH-RSFMHELDGLTLNFGCQVSKDRFSVLWRAADVSVKFGSSLNKMHL 137 Query: 186 HLSHDHVEYKLELSYENIWQIHYRCPHGQTAKYLLIQLYGAPRIFEKIDSGNVYEDHVFT 365 + D VEY+L+LSYENIWQI QT + LLIQL+GAPRI++K+ E V++ Sbjct: 138 FVCDDLVEYRLQLSYENIWQIVLYNSSVQTERLLLIQLFGAPRIYKKL------EYSVYS 191 Query: 366 YYMDPPDDQWVRATDFTSSYCIGQSSALCLELPQGRELSDFGESFADFEAKDGRFSLESG 545 +Y + PDDQWVR TDFT S CIGQSS LCL+LP+ +L DF +F + + F L +G Sbjct: 192 FYRETPDDQWVRTTDFTPS-CIGQSSGLCLQLPRHVKLPDFKNNFMHYTVSEEPFQLVNG 250 Query: 546 STFSKNLVLVPIIGPPQGIVLPYQILFKVSCLVQYGCLSGPTLDVRFFRLVDPANIDIAC 725 + F NL LVPI+ PP+G+ LPY++LFKV LVQ GCL G LD FF+ ++P I Sbjct: 251 APFCGNLPLVPIVQPPRGLELPYKLLFKVCSLVQTGCLPGMKLDTEFFQCLNPRRYAIRY 310 Query: 726 IEYALDKLYHLKNCCYDPVKWLKYKYRKYLTSEQPPKAPAISLDAGLVYVRRVQITPTKV 905 IE+ALDKLY++K CCYDPV WL+ +YRKY T E+ PK P ISLD GLVY+ RVQ+TPT+V Sbjct: 311 IEHALDKLYYIKECCYDPVAWLREQYRKYQTFEELPKPPTISLDDGLVYIHRVQVTPTRV 370 Query: 906 YFSGPEINVSNRVLRNYLDHIDNFIRISFIDEDLEKLYSTDLSPRTASADGDNRTGIFRR 1085 YF+GPE+N+SNRVLR + HIDNF+R+SFIDE+ +K+YSTDLSP+ A+ G+ RT ++ R Sbjct: 371 YFAGPEVNMSNRVLRQFSAHIDNFLRVSFIDEEWDKMYSTDLSPKVATGVGNGRTKLYER 430 Query: 1086 ILSILRNGIVIGSKKFEFLAFSSSQLRENSAWMFASSLGLNASVIREWMGNFRQIRNVAK 1265 +LS LRNGI IG K+F+FLAFSSSQLRENS WMFA GL A IR WMG+F IRNVAK Sbjct: 431 VLSTLRNGITIGEKRFQFLAFSSSQLRENSLWMFAPVDGLTADDIRRWMGDFSSIRNVAK 490 Query: 1266 YAARLGQSFGSSKET 1310 YAARLGQSF SS ET Sbjct: 491 YAARLGQSFSSSTET 505