BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia24_contig00018708
         (701 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|72678...    66   4e-19
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...    68   7e-19
gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata sub...    61   5e-18
ref|XP_004163799.1| PREDICTED: putative ribonuclease H protein A...    62   5e-18
gb|AAD12028.1| putative non-LTR retroelement reverse transcripta...    67   6e-18
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]        66   5e-17
dbj|BAB01431.1| non-LTR retroelement reverse transcriptase-like ...    57   1e-16
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...    62   2e-16
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal...    60   4e-16
ref|XP_004305958.1| PREDICTED: uncharacterized protein LOC101308...    91   5e-16
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...    56   5e-16
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]            66   1e-15
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...    56   2e-15
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]                64   2e-15
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ...    65   3e-15
dbj|BAB08692.1| non-LTR retroelement reverse transcriptase-like ...    54   4e-15
ref|XP_004173856.1| PREDICTED: putative ribonuclease H protein A...    58   9e-15
gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thali...    63   7e-14
ref|NP_176271.1| RNA-directed DNA polymerase (reverse transcript...    54   1e-13
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...    69   1e-13

>emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|7267871|emb|CAB78214.1|
           putative protein [Arabidopsis thaliana]
          Length = 473

 Score = 66.2 bits (160), Expect(2) = 4e-19
 Identities = 55/176 (31%), Positives = 76/176 (43%), Gaps = 6/176 (3%)
 Frame = -3

Query: 699 VTKEESIWVNKWIWEVRLKSKSFWAVSCPQDC-PWHWRKILKIRWRFFGLVKCCIGDGNK 523
           ++  +S+WV KWI    LK  SFWAV        W WRKILK R     L K  I +G +
Sbjct: 144 ISHADSLWV-KWIQSSLLKKVSFWAVRENTSLGSWMWRKILKFRDIARTLCKVEINNGAR 202

Query: 522 VFLWYDNWHLLGSLYGRVSTRIIYDFASSLDANVCFIISNGGWK*LSS*F-NAVLEFIDN 346
              WYD+W  LG L      R   D   +  A V     N   +   + F N V E +  
Sbjct: 203 TSFWYDDWSDLGRLIDSAGDRGAIDLGINKHATVVEAWGNRRRRRHRTNFLNRVEERLIL 262

Query: 345 CFVASNVNVEEMYVWLPTNSTFFIQFA----WNCFRGPISKVDWARLVWYKVTFPR 190
            + + N   E+  +W    + F   F+    WN  R   +KV W + VW+    P+
Sbjct: 263 SWNSRN-QAEDRALWKGKENRFRSIFSTKDTWNHIRTVSNKVAWYKGVWFAQAIPK 317



 Score = 55.1 bits (131), Expect(2) = 4e-19
 Identities = 23/62 (37%), Positives = 34/62 (54%)
 Frame = -2

Query: 199 IPKVAFITWLVVRGGLATQDKLTQCRFLESMSCVFCRSLVEDKNHLFFSCDLIAPIWKQV 20
           IPK AF  WL V   L+T D++T        +C+ C   +E ++HLFFSC     IW+ +
Sbjct: 315 IPKHAFCMWLAVHNRLSTGDRMTLWNMGVDATCILCNKALESRDHLFFSCPFATEIWEPL 374

Query: 19  LR 14
            +
Sbjct: 375 AK 376


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score = 68.2 bits (165), Expect(2) = 7e-19
 Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 5/175 (2%)
 Frame = -3

Query: 699  VTKEESIWVNKWIWEVRLKSKSFWAVS-CPQDCPWHWRKILKIRWRFFGLVKCCIGDGNK 523
            V+   S+WV KW+ +  L++ SFW V        W W+K+LK R     L K  +G+G +
Sbjct: 895  VSHSNSLWV-KWVDQHLLRNASFWEVKQTVSQGSWIWKKLLKYREVAKTLSKVEVGNGKQ 953

Query: 522  VFLWYDNWHLLGSLYGRVSTRIIYDFASSLDANVCFIISNGGWK*LSS*FNAVLEFIDNC 343
               WYDNW  LG L  R   R + D   S    V    +N   +   +    V+E     
Sbjct: 954  TSFWYDNWSDLGQLLERTGDRGLIDLGISRRMTVEEAWTNRRQRRHRNDVYNVIEDALKK 1013

Query: 342  FVASNVNVEEMYVWLPTNSTFFIQFA----WNCFRGPISKVDWARLVWYKVTFPR 190
               +    E+  +W   +  F   F+    W+  R   ++V W +++W+    P+
Sbjct: 1014 SWDTRTETEDKVLWRGKSDVFRTTFSTRDTWHHTRSTSARVPWHKVIWFSHATPK 1068



 Score = 52.4 bits (124), Expect(2) = 7e-19
 Identities = 21/61 (34%), Positives = 34/61 (55%)
 Frame = -2

Query: 196  PKVAFITWLVVRGGLATQDKLTQCRFLESMSCVFCRSLVEDKNHLFFSCDLIAPIWKQVL 17
            PK +F +WL   G L T D++       +  C+FC+  +E ++HLFF+C   + IW  + 
Sbjct: 1067 PKYSFCSWLAAHGRLPTGDRMINWANGIATDCIFCQGTLETRDHLFFTCSFTSVIWVDLA 1126

Query: 16   R 14
            R
Sbjct: 1127 R 1127


>gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata subsp. lyrata]
          Length = 441

 Score = 60.8 bits (146), Expect(2) = 5e-18
 Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 5/170 (2%)
 Frame = -3

Query: 684 SIWVNKWIWEVRLKSKSFWAVSCPQDC-PWHWRKILKIRWRFFGLVKCCIGDGNKVFLWY 508
           S+WV +W+ +  ++  SFW++        W WRK+LK R    G  +  I +G  V  W+
Sbjct: 119 SLWV-QWLRQYVIRKGSFWSLRDTSTLGSWMWRKLLKYRHLASGFTQYEIRNGKGVSFWH 177

Query: 507 DNWHLLGSLYGRVSTRIIYDFASSLDANVCFIISNGGWK*LSS*FNAVLEFIDNCFVASN 328
           DNW  LG L     TR   D    + A V   +++   +  +   N +   ++       
Sbjct: 178 DNWSPLGPLIAISGTRGCIDMGIDIHATVAEALTHRRRRHRADHLNQMEAQLEELRTKGL 237

Query: 327 VNVEEMYVWLPTNSTFFIQFA----WNCFRGPISKVDWARLVWYKVTFPR 190
           V  E++ +W      F   F+    W   R    + +W + +W+    P+
Sbjct: 238 VETEDVVLWKGKGGRFKPSFSTKETWADTREQKPRNEWYQGIWFSHATPK 287



 Score = 57.0 bits (136), Expect(2) = 5e-18
 Identities = 23/56 (41%), Positives = 34/56 (60%)
 Frame = -2

Query: 196 PKVAFITWLVVRGGLATQDKLTQCRFLESMSCVFCRSLVEDKNHLFFSCDLIAPIW 29
           PK +FITWL  +  L+T D++       ++SCVFC+   E +NHLFF+C     +W
Sbjct: 286 PKYSFITWLATKNRLSTGDRMMSWNAGVNLSCVFCQEQTETRNHLFFTCRYSREVW 341


>ref|XP_004163799.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Cucumis
           sativus]
          Length = 288

 Score = 61.6 bits (148), Expect(2) = 5e-18
 Identities = 49/174 (28%), Positives = 79/174 (45%), Gaps = 4/174 (2%)
 Frame = -3

Query: 699 VTKEESIWVNKWIWEVRLKSKSFWAVSCPQDCPWHWRKILKIRWRFFGLVKCCIGDGNKV 520
           + K  S+WV  W+    LK +S W +       W +R IL+ R      VK  +G+G K 
Sbjct: 43  LVKSCSLWV-AWVEAYILKGRSLWEIDVGVGRSWCFRAILRKRDILKAHVKMEVGNGKKC 101

Query: 519 FLWYDNWHLLGSLYGRVSTRIIYDFASSLDANVCFIISNGG---WK*LSS*FNAVLEFID 349
            +W D     G +  +   R+IYD  S  DA +   +   G   W  +S     + + I 
Sbjct: 102 RVWLDPRIQGGPIIQQFGERVIYDADSRRDARLVDFMGRDGDWRWSLVSLDLMDIWDRIQ 161

Query: 348 NCFVASNVNVEEMYVWLP-TNSTFFIQFAWNCFRGPISKVDWARLVWYKVTFPR 190
              V  + +VE+M+V +P ++ +F I  A    R   S+V W+ L+W     P+
Sbjct: 162 G--VRPSPSVEDMWVRVPGSHESFSIVSACEAIRPHSSRVGWSGLLWGGGNIPK 213



 Score = 56.2 bits (134), Expect(2) = 5e-18
 Identities = 24/63 (38%), Positives = 38/63 (60%)
 Frame = -2

Query: 205 GHIPKVAFITWLVVRGGLATQDKLTQCRFLESMSCVFCRSLVEDKNHLFFSCDLIAPIWK 26
           G+IPK +F TWL ++  L T+D+L++      +SC+ C    E ++HLFF C     IW 
Sbjct: 209 GNIPKHSFYTWLAIKDRLGTRDRLSRWDSSIPLSCILCGRNYESRDHLFFPCPFGWEIWS 268

Query: 25  QVL 17
           ++L
Sbjct: 269 RIL 271


>gb|AAD12028.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1447

 Score = 66.6 bits (161), Expect(2) = 6e-18
 Identities = 47/174 (27%), Positives = 72/174 (41%), Gaps = 8/174 (4%)
 Frame = -3

Query: 687  ESIWVNKWIWEVRLKSKSFWAVSCPQDC-PWHWRKILKIRWRFFGLVKCCIGDGNKVFLW 511
            +S+WV KWI    LK+ SFW +        W W+K+LK R       K  + +G +   W
Sbjct: 1123 DSLWV-KWIETNLLKNNSFWIIKSSTTMGSWMWKKLLKYREVAKTFSKIEVHNGQRTSFW 1181

Query: 510  YDNWHLLGSLYGRVSTRIIYDFASSLDANVCFIISNGGWK*LSS*FNAVLEFIDNCFVAS 331
            YD+W  +G +   +  + I D     D  V  +      +         L  ++N    S
Sbjct: 1182 YDDWSCMGRIMNFIGDKGIIDLGIKRDKLVAEVWDTHRSR---RHITDYLNQVENVIATS 1238

Query: 330  NVNVEEM---YVWLPTNSTFFIQFA----WNCFRGPISKVDWARLVWYKVTFPR 190
              N +E     VW   N  +  QF+    WN  R   +KV W + VW+    P+
Sbjct: 1239 KANRKEKADDVVWRGRNDIYKPQFSTRDTWNNIRTTATKVTWYKGVWFYQATPK 1292



 Score = 50.8 bits (120), Expect(2) = 6e-18
 Identities = 20/56 (35%), Positives = 32/56 (57%)
 Frame = -2

Query: 196  PKVAFITWLVVRGGLATQDKLTQCRFLESMSCVFCRSLVEDKNHLFFSCDLIAPIW 29
            PK +F  WL     L+T D++   + + S SCVFC    + ++HLFF+C   + +W
Sbjct: 1291 PKFSFCVWLAALDRLSTGDRMANWKGVSSGSCVFCNHPTKSRDHLFFNCPYSSEVW 1346


>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score = 66.2 bits (160), Expect(2) = 5e-17
 Identities = 50/179 (27%), Positives = 73/179 (40%), Gaps = 12/179 (6%)
 Frame = -3

Query: 690  EESIWVNKWIWEVRLKSKSFWAVSCPQDCPWHWRKILKIRWRFFGLVKCCIGDGNKVFLW 511
            ++S+W + W     L   SFWAV   Q   W W+++L +R      + C +G+G K   W
Sbjct: 891  KDSLWAD-WQHLHHLSRGSFWAVEGGQSDSWTWKRLLSLRPLAHQFLVCKVGNGLKADYW 949

Query: 510  YDNWHLLGSLYGRVSTRIIYDFASS-----LDANVCFIISNGGWK---*LSS*FNAVLEF 355
            YDNW  LG L+     RII D   S     L A V    S  GW+     S+    + + 
Sbjct: 950  YDNWTSLGPLF-----RIIGDIGPSSLRVPLLAKVASAFSEDGWRLPVSRSAPAKGIHDH 1004

Query: 354  IDNCFVASNVNVE-EMYVWLPTN---STFFIQFAWNCFRGPISKVDWARLVWYKVTFPR 190
            +    V S    + + Y W         F     W   R   +   WA  +W+K   P+
Sbjct: 1005 LCTVPVPSTAQEDVDRYEWSVNGFLCQGFSAAKTWEAIRPKATVKSWASSIWFKGAVPK 1063



 Score = 48.1 bits (113), Expect(2) = 5e-17
 Identities = 21/65 (32%), Positives = 34/65 (52%)
 Frame = -2

Query: 208  QGHIPKVAFITWLVVRGGLATQDKLTQCRFLESMSCVFCRSLVEDKNHLFFSCDLIAPIW 29
            +G +PK AF  W+     L T+ +L     ++S +CV C    E ++HL   C+  A +W
Sbjct: 1058 KGAVPKYAFNMWVSHLNRLLTRQRLASWGHIQSDACVLCSFASESRDHLLLICEFSAQVW 1117

Query: 28   KQVLR 14
            + V R
Sbjct: 1118 RLVFR 1122


>dbj|BAB01431.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 637

 Score = 56.6 bits (135), Expect(2) = 1e-16
 Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 10/75 (13%)
 Frame = -2

Query: 196 PKVAFITWLVVRGGLATQDKLTQCRFLESMSCVFCRSLVEDKNHLFFSCDLIAPIW---- 29
           PK +F+TWL     LAT D+L +       +CVFC   +E ++HLFFSC   + IW    
Sbjct: 290 PKYSFVTWLAFHNRLATGDRLYKWNSEARATCVFCDEELETRDHLFFSCPYSSQIWIALA 349

Query: 28  ------KQVLRWSLI 2
                 + V  WSLI
Sbjct: 350 KGLLNGRNVSSWSLI 364



 Score = 56.2 bits (134), Expect(2) = 1e-16
 Identities = 39/175 (22%), Positives = 77/175 (44%), Gaps = 5/175 (2%)
 Frame = -3

Query: 699 VTKEESIWVNKWIWEVRLKSKSFWAVSCPQDC-PWHWRKILKIRWRFFGLVKCCIGDGNK 523
           V+ ++S+WV +W+++  ++ ++FW+V        W W+KILK R +     +  +  G  
Sbjct: 118 VSAKDSLWV-QWVYKNLIRKETFWSVKENTSLGSWLWKKILKQRDKARLFHQMEVRSGTT 176

Query: 522 VFLWYDNWHLLGSLYGRVSTRIIYDFASSLDANVCFIISNGGWK*LSS*FNAVLEFIDNC 343
              W+D+W  LG L+  + +R   D   +  A V  ++     K   + F   +E     
Sbjct: 177 TSFWHDHWSPLGRLHQHLGSRGTIDLGIATQATVAEVLDTHRRKRHRADFLNQIENHIEL 236

Query: 342 FVASNVNVEEMYVWLPTNSTFFIQFA----WNCFRGPISKVDWARLVWYKVTFPR 190
              +     +  +W     +F   F+    W   R   ++ +W R VW+  + P+
Sbjct: 237 VRQARSQESDRSLWKQKEDSFKGSFSSPKTWQQIRTISNECEWYRGVWFPSSTPK 291


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score = 62.4 bits (150), Expect(2) = 2e-16
 Identities = 40/176 (22%), Positives = 78/176 (44%), Gaps = 6/176 (3%)
 Frame = -3

Query: 699  VTKEESIWVNKWIWEVRLKSKSFWAVSCPQDC-PWHWRKILKIRWRFFGLVKCCIGDGNK 523
            ++ + S+WV  WIW   ++  +FW+ +       W W+K+LK R     + K  + +G+ 
Sbjct: 1192 LSTQPSLWVT-WIWTFIIRKGTFWSANERSSLGSWMWKKLLKYRELAKSMHKVEVRNGSS 1250

Query: 522  VFLWYDNWHLLGSLYGRVSTRIIYDFASSLDANVCFII-SNGGWK*LSS*FNAVLEFIDN 346
               WYD+W  LG L     TR + D    L+ N+  ++ ++   +  ++ +N +   I  
Sbjct: 1251 TSFWYDHWSHLGRLLDITGTRRVIDLGIPLETNLETVLRTHQHRQHRAAIYNRINAEIQR 1310

Query: 345  CFVASNVNVEEMYVWLPT----NSTFFIQFAWNCFRGPISKVDWARLVWYKVTFPR 190
                      ++ +W       N  F  +  WN  R    + +W + VW+  + P+
Sbjct: 1311 LQQQEREAGPDISLWRSLKNDFNKRFITKVTWNNVRTHQPQQNWYKGVWFPYSTPK 1366



 Score = 50.1 bits (118), Expect(2) = 2e-16
 Identities = 19/57 (33%), Positives = 34/57 (59%)
 Frame = -2

Query: 196  PKVAFITWLVVRGGLATQDKLTQCRFLESMSCVFCRSLVEDKNHLFFSCDLIAPIWK 26
            PK +F+ WL V+  L+T D++      + ++C  C +  E ++HLFFSC   + +W+
Sbjct: 1365 PKYSFLLWLTVQNRLSTGDRIKAWNSGQLVTCTLCNNAEETRDHLFFSCQYTSYVWE 1421


>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score = 60.1 bits (144), Expect(2) = 4e-16
 Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 6/175 (3%)
 Frame = -3

Query: 696 TKEESIWVNKWIWEVRLKSKSFWAVSCPQDC-PWHWRKILKIRWRFFGLVKCCIGDGNKV 520
           + ++S+WV KW     LK +SFW+++       W W+K+LK R       +  + +G + 
Sbjct: 301 SNDDSLWV-KWSKMNLLKQESFWSLTPNSSLGSWMWKKMLKYRETAKPFSRVEVNNGART 359

Query: 519 FLWYDNWHLLGSLYGRVSTRIIYDFASSLDANVCFIISN-GGWK*LSS*FNAVLEFIDNC 343
             W+DNW  +G L      R   D   S +  V    SN    K  +   N +   ++  
Sbjct: 360 SFWFDNWSGMGHLMDVTGQRGQIDLGISRNKTVAEAWSNRRRRKHRTEQLNDIEAALNQK 419

Query: 342 FVASNVNVEEMYVWLPTNSTFFIQFA----WNCFRGPISKVDWARLVWYKVTFPR 190
           +   N+  E+  +W      F   F+    WN  R   ++V W + VW+  + P+
Sbjct: 420 YQTRNLLREDATLWRGKGDVFKTSFSTKDTWNQVRKKSNEVAWYKGVWFSHSTPK 474



 Score = 51.2 bits (121), Expect(2) = 4e-16
 Identities = 21/61 (34%), Positives = 33/61 (54%)
 Frame = -2

Query: 196 PKVAFITWLVVRGGLATQDKLTQCRFLESMSCVFCRSLVEDKNHLFFSCDLIAPIWKQVL 17
           PK  F TWL +R  L+T  ++        + C FC + +E ++HLFFSC   + IW  + 
Sbjct: 473 PKYQFCTWLALRNRLSTGYRMQLWNNGSDVKCTFCSTSIETRDHLFFSCSYASAIWTAIA 532

Query: 16  R 14
           +
Sbjct: 533 K 533


>ref|XP_004305958.1| PREDICTED: uncharacterized protein LOC101308407 [Fragaria vesca
           subsp. vesca]
          Length = 177

 Score = 90.5 bits (223), Expect = 5e-16
 Identities = 56/168 (33%), Positives = 83/168 (49%), Gaps = 6/168 (3%)
 Frame = -3

Query: 699 VTKEESIWVNKWIWEVRLKSKSFWAVSCPQDCPWHWRKILKIRWRFFGLVKCCIGDGNKV 520
           +T + S+W + WI    L+ KSFW VS PQ C W+WRK+LKIR      +K  IGDG   
Sbjct: 9   LTDDSSLW-SSWIKVNFLRDKSFWMVSTPQICSWNWRKLLKIRDFIRPSIKHIIGDGKST 67

Query: 519 FLWYDNWHLLGSLYGRVSTRIIYDFASSLDANVCFIISNGGWK*LSS*FNAVLEFIDNC- 343
           + W+D WH  G L  R+    + +     +A V  I+    W    S  +A+L    N  
Sbjct: 68  YFWHDYWHPFGPLLPRLGPGAMINSGIPSNALVSSIVKGESWCWPLSTNSAILRVASNVE 127

Query: 342 FVASNVNVEEMYVWLPTNSTFF-----IQFAWNCFRGPISKVDWARLV 214
            +  N + ++  +WLP+ S  F     +   W     P+  VDWA++V
Sbjct: 128 GLIPNSSCKDSCIWLPSTSGIFSTASTMDQIW--IHHPV--VDWAKIV 171


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score = 56.2 bits (134), Expect(2) = 5e-16
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 10/75 (13%)
 Frame = -2

Query: 196  PKVAFITWLVVRGGLATQDKLTQCRFLESMSCVFCRSLVEDKNHLFFSCDLIAPIW---- 29
            PK +F+TWL     L T DK+ +        CVFC   +E ++HLFFSC   + +W    
Sbjct: 1214 PKYSFVTWLAFHNRLTTSDKICKWNSGARYDCVFCGEELETRDHLFFSCPYSSHVWFSLT 1273

Query: 28   ------KQVLRWSLI 2
                  + +L W+LI
Sbjct: 1274 KGLLNGRNILNWNLI 1288



 Score = 54.7 bits (130), Expect(2) = 5e-16
 Identities = 43/176 (24%), Positives = 78/176 (44%), Gaps = 6/176 (3%)
 Frame = -3

Query: 699  VTKEESIWVNKWIWEVRLKSKSFWAVSCPQDC-PWHWRKILKIRWRFFGLVKCCIGDGNK 523
            ++  +S+WV KW+ +  ++ ++FW+V        W WRKILK R +     +  +  G  
Sbjct: 1042 LSARDSLWV-KWVNKHLIRKETFWSVKENTGLGSWLWRKILKQRDKARLFHRMEVRSGTF 1100

Query: 522  VFLWYDNWHLLGSLYGRVSTRIIYDFASSLDANVCFIISNGGWK*LSS*F-NAVLEFIDN 346
               W+D+W  LG L+  + +R   D     +A V  +++    K   + F N +   I+ 
Sbjct: 1101 TSFWHDHWCPLGRLHQHMGSRGTIDLGIPNNATVAEVMNTHRRKRHRADFLNQIKSQIEL 1160

Query: 345  CFVASNVNVEEMYVWLPTNSTFFIQFA----WNCFRGPISKVDWARLVWYKVTFPR 190
                 + + +   +W     TF   F+    W   R    + DW R VW+  + P+
Sbjct: 1161 ARQDRSTDGDRS-LWKQKEDTFKSSFSSSKTWQQIRSISLRCDWYRGVWFSASTPK 1215


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score = 65.9 bits (159), Expect(2) = 1e-15
 Identities = 49/177 (27%), Positives = 73/177 (41%), Gaps = 9/177 (5%)
 Frame = -3

Query: 693  KEESIWVNKWIWEVRLKSKSFWAVSCPQDCPWHWRKILKIRWRFFGLVKCCIGDGNKVFL 514
            ++ S+W  +W    RL   SFW V+  Q  PW W+ +L +R      +K  +G+G  V  
Sbjct: 750  RDTSLWA-QWQRHHRLGHASFWQVNALQTDPWTWKMLLNLRPLAEKFIKAKVGNGGTVSF 808

Query: 513  WYDNWHLLGSL---YGRVSTRIIYDFASSLDANVCFIISNGGWK---*LSS*FNAVLEFI 352
            W+D W  LG L    G V +R          A V   I   GW+     S   +++L  +
Sbjct: 809  WFDCWTSLGPLIKYLGDVGSR---PLRIPFSAKVADAIDGSGWRLPLSRSLTADSILSHL 865

Query: 351  DNCFVASNVNVEEMYVWLPTN---STFFIQFAWNCFRGPISKVDWARLVWYKVTFPR 190
             +    S + V + Y W   +     F     W   R       WAR VW+K   P+
Sbjct: 866  ASLPPPSPLMVSDSYSWCVDDVDCQGFSAAKTWEVLRPRRPVKRWARSVWFKGAVPK 922



 Score = 43.5 bits (101), Expect(2) = 1e-15
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = -2

Query: 208  QGHIPKVAFITWLVVRGGLATQDKLTQCRFLESMSCVFCRSLVEDKNHLFFSCDLIAPIW 29
            +G +PK AF  W      L T+ +L     + S  C  C    E ++HL   CD  + +W
Sbjct: 917  KGAVPKHAFNFWTAQLNRLPTRQRLVSWGLVSSAECCLCSFDTETRDHLLLLCDFSSQVW 976

Query: 28   KQV 20
            + V
Sbjct: 977  RMV 979


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1216

 Score = 56.2 bits (134), Expect(2) = 2e-15
 Identities = 43/173 (24%), Positives = 68/173 (39%), Gaps = 6/173 (3%)
 Frame = -3

Query: 690  EESIWVNKWIWEVRLKSKSFWAVSCPQDC-PWHWRKILKIRWRFFGLVKCCIGDGNKVFL 514
            ++S+WV KW     LK +SFW++        W WR++LK R       K  + +G     
Sbjct: 619  QDSLWV-KWTRMNLLKKESFWSIGTHSTLGSWIWRRLLKHREVAKSFCKIEVNNGVNTSF 677

Query: 513  WYDNWHLLGSLYGRVSTRIIYDFASSLDANVCFIISNGGWK-*LSS*FNAVLEFIDNCFV 337
            W+DNW   G L      R   D   S    +    S    K       N   E +   + 
Sbjct: 678  WFDNWSEKGPLINLTGARGAIDMGISRHMTLAEAWSRRRRKRHRVEILNEFEEILLQKYQ 737

Query: 336  ASNVNVEEMYVWLPTNSTFFIQFA----WNCFRGPISKVDWARLVWYKVTFPR 190
              N+ +E+  +W      F  +F+    WN  R   ++  W + VW+    P+
Sbjct: 738  HRNIELEDAILWRGKEDVFKARFSTKDTWNHIRTSSNQRAWHKGVWFAHATPK 790



 Score = 52.4 bits (124), Expect(2) = 2e-15
 Identities = 22/61 (36%), Positives = 34/61 (55%)
 Frame = -2

Query: 196 PKVAFITWLVVRGGLATQDKLTQCRFLESMSCVFCRSLVEDKNHLFFSCDLIAPIWKQVL 17
           PK +F  WL +R  L+T D++         +CVFC S +E ++HLFF C   + IW  + 
Sbjct: 789 PKFSFCAWLAIRNRLSTGDRMMTWNNGTPTTCVFCSSPMETRDHLFFQCCYSSEIWTSIA 848

Query: 16  R 14
           +
Sbjct: 849 K 849


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score = 64.3 bits (155), Expect(2) = 2e-15
 Identities = 45/180 (25%), Positives = 75/180 (41%), Gaps = 10/180 (5%)
 Frame = -3

Query: 699  VTKEESIWVNKWIWEVRLKSKSFWAVSCPQDC-PWHWRKILKIRWRFFGLVKCCIGDGNK 523
            ++   S+W  KW+ E  ++ KS W++        W WRKILKIR       +  +G+G  
Sbjct: 542  ISNSNSLWT-KWVAEYLIRKKSIWSLKQSTSMGSWIWRKILKIRDVAKSFSRVEVGNGES 600

Query: 522  VFLWYDNWHLLGSLYGRVSTRIIYDFASSLDANVCFIISNGGWK*LSS*FN--AVLEFID 349
               WYD+W   G L   V  +   D     +A+V        W   S   +  ++L  I+
Sbjct: 601  ASFWYDHWSAHGRLIDTVGDKGTIDLGIPREASVA-----DAWTRRSRRRHRTSLLNEIE 655

Query: 348  NCFVASNV---NVEEMYVWLPTNSTFFIQFA----WNCFRGPISKVDWARLVWYKVTFPR 190
                   +   + E+  +W   N  F   F+    W+  +   S V W + VW++   P+
Sbjct: 656  EMMAYQRIHHSDAEDTVLWRGKNDVFKPHFSTRDTWHLIKATSSTVSWHKGVWFRHATPK 715



 Score = 44.3 bits (103), Expect(2) = 2e-15
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = -2

Query: 196 PKVAFITWLVVRGGLATQDKLTQCRFLESMS--CVFCRSLVEDKNHLFFSCDLIAPIW 29
           PK A  TWL +   L T D++ +     S+S  CV C +  +   HLFFSC   + +W
Sbjct: 714 PKYALCTWLAIHNRLPTGDRMLKWNSSGSVSGNCVLCTNNSKTLEHLFFSCSYASTVW 771


>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
            thaliana]
          Length = 1072

 Score = 64.7 bits (156), Expect(2) = 3e-15
 Identities = 48/177 (27%), Positives = 73/177 (41%), Gaps = 9/177 (5%)
 Frame = -3

Query: 693  KEESIWVNKWIWEVRLKSKSFWAVSCPQDCPWHWRKILKIRWRFFGLVKCCIGDGNKVFL 514
            ++ S+W  +W    RL   SFW V+  Q  PW W+ +L +R      +K  +G+G  V  
Sbjct: 750  RDTSLWA-QWQRHHRLGHASFWQVNALQTDPWTWKMLLNLRPLAEKFIKAKVGNGGTVSF 808

Query: 513  WYDNWHLLGSL---YGRVSTRIIYDFASSLDANVCFIISNGGWK---*LSS*FNAVLEFI 352
            W+D W  LG L    G V +R          A V   I   GW+     S   +++L  +
Sbjct: 809  WFDCWTSLGPLIKYLGDVGSR---PLRIPFSAKVADAIDGSGWRLPLSRSLTADSILSHL 865

Query: 351  DNCFVASNVNVEEMYVWLPTN---STFFIQFAWNCFRGPISKVDWARLVWYKVTFPR 190
             +    S + V + Y W   +     F     W   R       WA+ VW+K   P+
Sbjct: 866  ASLPPPSPLMVSDSYSWCVDDVDCQGFSAAKTWEVLRPRRPVKRWAKSVWFKGAVPK 922



 Score = 43.5 bits (101), Expect(2) = 3e-15
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = -2

Query: 208  QGHIPKVAFITWLVVRGGLATQDKLTQCRFLESMSCVFCRSLVEDKNHLFFSCDLIAPIW 29
            +G +PK AF  W      L T+ +L     + S  C  C    E ++HL   CD  + +W
Sbjct: 917  KGAVPKHAFNFWTAQLNRLPTRQRLVSWGLVSSAECCLCSFDTETRDHLLLLCDFSSQVW 976

Query: 28   KQV 20
            + V
Sbjct: 977  RMV 979


>dbj|BAB08692.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana] gi|93007380|gb|ABE97193.1|
           hypothetical protein At5g13655 [Arabidopsis thaliana]
          Length = 385

 Score = 53.9 bits (128), Expect(2) = 4e-15
 Identities = 43/171 (25%), Positives = 71/171 (41%), Gaps = 6/171 (3%)
 Frame = -3

Query: 684 SIWVNKWIWEVRLKSKSFWAVS-CPQDCPWHWRKILKIRWRFFGLVKCCIGDGNKVFLWY 508
           S+WV+ W+ +  L+  S WAV        W W+K+LK R +     K  + +G     WY
Sbjct: 59  SLWVD-WVKKHLLRGGSLWAVKETSSRGSWIWKKLLKYRDKAKCFHKVDVRNGESTSFWY 117

Query: 507 DNWHLLGSLYGRVSTRIIYDFASSLDANV-CFIISNGGWK*LSS*FNAVLEFIDNCFVAS 331
           D+W  LG LY +   R   D     D+ +   I++    K      NAV   I     + 
Sbjct: 118 DSWSSLGCLYDKFGERGCIDMGIPKDSTLSSAIMTTRRRKHRQPLLNAVETEIQKQKQSR 177

Query: 330 NVNVEEMYVWLPT----NSTFFIQFAWNCFRGPISKVDWARLVWYKVTFPR 190
            V   ++ +W       + TF  +  W+  R    ++   R +W+    P+
Sbjct: 178 IVTERDVALWKGKEDGFHPTFLSKETWSQIRNTQPEMQGYRGIWFSNATPK 228



 Score = 53.9 bits (128), Expect(2) = 4e-15
 Identities = 23/65 (35%), Positives = 37/65 (56%)
 Frame = -2

Query: 196 PKVAFITWLVVRGGLATQDKLTQCRFLESMSCVFCRSLVEDKNHLFFSCDLIAPIWKQVL 17
           PK A +TWL+VR  +AT +K+         SC+FC++  E + HLFF C     +W  ++
Sbjct: 227 PKYALLTWLMVRNRIATGEKMGLWNQNTDTSCIFCKNPNETREHLFFQCVYTRKVWNGLI 286

Query: 16  RWSLI 2
           +  L+
Sbjct: 287 KGLLL 291


>ref|XP_004173856.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Cucumis
           sativus]
          Length = 342

 Score = 58.2 bits (139), Expect(2) = 9e-15
 Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 3/173 (1%)
 Frame = -3

Query: 699 VTKEESIWVNKWIWEVRLKSKSFWAVSCPQDCPWHWRKILKIRWRFFGLVKCCIGDGNKV 520
           + K  S+WV+ W+    LK +S W +    +                      +G+G K 
Sbjct: 63  LVKSGSLWVS-WVESYILKGRSLWEIDAGME----------------------VGNGRKC 99

Query: 519 FLWYDNWHLLGSLYGRVSTRIIYDFASSLDAN-VCFIISNGGWK*LSS*FNAVLEFIDNC 343
            +W   W   G +  +   R+IYD  S  D   V F+  NG W+  S     +++  D  
Sbjct: 100 RVWLVPWIQGGPIIQQFGERVIYDAGSRWDVRLVDFMGRNGDWR-WSLVSLDLMDIWDRV 158

Query: 342 -FVASNVNVEEMYVWLP-TNSTFFIQFAWNCFRGPISKVDWARLVWYKVTFPR 190
             V  + +VE+ +VW+P +  +F I  AW   R   S+V W+ L+W     P+
Sbjct: 159 QGVRPSPSVEDRWVWVPGSRDSFSITSAWETIRPHSSRVGWSGLLWGGGNIPK 211



 Score = 48.5 bits (114), Expect(2) = 9e-15
 Identities = 21/50 (42%), Positives = 32/50 (64%)
 Frame = -2

Query: 205 GHIPKVAFITWLVVRGGLATQDKLTQCRFLESMSCVFCRSLVEDKNHLFF 56
           G+IPK +F  WL +R  L+T+D+L++      +SC+ C    E +NHLFF
Sbjct: 207 GNIPKHSFCAWLAIRDRLSTRDRLSRWDRSIPLSCLLCGGNYESRNHLFF 256


>gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thaliana]
          Length = 504

 Score = 63.2 bits (152), Expect(2) = 7e-14
 Identities = 54/176 (30%), Positives = 75/176 (42%), Gaps = 6/176 (3%)
 Frame = -3

Query: 699 VTKEESIWVNKWIWEVRLKSKSFWAVSCPQDC-PWHWRKILKIRWRFFGLVKCCIGDGNK 523
           ++  +S+WV KWI    LK   FWAV        W WRKILK R     L K  I +G +
Sbjct: 225 ISHADSLWV-KWIQSSLLKKVFFWAVRENTSLGSWMWRKILKFRDIARTLCKVEINNGAQ 283

Query: 522 VFLWYDNWHLLGSLYGRVSTRIIYDFASSLDANVCFIISNGGWK*LSS*F-NAVLEFIDN 346
              WYD+W  LG L      R   D   +  A V     N   +   + F N V E +  
Sbjct: 284 TSFWYDDWSDLGRLIESAGDRGAIDLGINKHATVVEAWGNRRRRRHRANFLNRVEERLVL 343

Query: 345 CFVASNVNVEEMYVWLPTNSTFFIQFA----WNCFRGPISKVDWARLVWYKVTFPR 190
            + + N   E+  +W    + F   F+    WN  R   +KV W + VW+    P+
Sbjct: 344 SWNSRN-QAEDCALWKGKENRFRSIFSTKDTWNHIRTVSNKVAWYKGVWFAQAIPK 398



 Score = 40.4 bits (93), Expect(2) = 7e-14
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = -2

Query: 199 IPKVAFITWLVVRGGLATQDKLTQCRFLESMSCVFCRSLVEDKNHL 62
           IPK AF  WL V   L+T D++T        +C+ C + +E ++HL
Sbjct: 396 IPKHAFCMWLAVHNRLSTGDRMTLWNMGVDATCILCNNALESRDHL 441


>ref|NP_176271.1| RNA-directed DNA polymerase (reverse transcriptase)-related protein
           [Arabidopsis thaliana] gi|332195602|gb|AEE33723.1|
           RNA-directed DNA polymerase (reverse
           transcriptase)-related protein [Arabidopsis thaliana]
          Length = 289

 Score = 54.3 bits (129), Expect(2) = 1e-13
 Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 12/133 (9%)
 Frame = -3

Query: 552 VKCCIGDGNKVFLWYDNWHLLGSL------YGRVSTRIIYDFASSLDANVCFIISNGGWK 391
           VKC +G+G     W+D+W  LG L      YG  S RI       L+A V   +   GWK
Sbjct: 13  VKCNLGNGRIAHFWHDSWTSLGPLIKVMGDYGSRSLRI------PLNARVVEALGVNGWK 66

Query: 390 ---*LSS*FNAVLEFIDNCFVASNVNVEEMYVWLPTN---STFFIQFAWNCFRGPISKVD 229
                S+   A+ + I      S   +E+ + W+        F     W+  R    ++D
Sbjct: 67  LPLSRSAPAQAIHDHISTITTPSPATIEDSFDWVVGGVVCQGFSSARTWDAIRPRAPELD 126

Query: 228 WARLVWYKVTFPR 190
           WA+ VW+K   P+
Sbjct: 127 WAKAVWFKGAVPK 139



 Score = 48.9 bits (115), Expect(2) = 1e-13
 Identities = 20/61 (32%), Positives = 32/61 (52%)
 Frame = -2

Query: 208 QGHIPKVAFITWLVVRGGLATQDKLTQCRFLESMSCVFCRSLVEDKNHLFFSCDLIAPIW 29
           +G +PK AF  W+     L T+ +L     ++S  C  C    E ++HL FSC+  A +W
Sbjct: 134 KGAVPKHAFNMWISQLDRLPTRQRLASWGHIQSFDCCLCTIETESRDHLLFSCEFAAQVW 193

Query: 28  K 26
           +
Sbjct: 194 R 194


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
            [Arabidopsis thaliana]
          Length = 1164

 Score = 69.3 bits (168), Expect(2) = 1e-13
 Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 7/172 (4%)
 Frame = -3

Query: 684  SIWVNKWIWEVRL-KSKSFWAVSCPQDCPWHWRKILKIRWRFFGLVKCCIGDGNKVFLWY 508
            S+WV  W  +  L KS SFW         W+W+ +L++R      ++C +G+G     W+
Sbjct: 790  SLWV-AWHKQHSLGKSTSFWNQPEKPHDSWNWKCLLRLRVVAERFIRCNVGNGRDASFWF 848

Query: 507  DNWHLLGSLYGRVSTRIIYDFASSLDANVCFIISNGGWK*LSS*FNAVLEF---IDNCFV 337
            DNW   G L   +      D    L+A +  + ++ GW       +  L     + N  +
Sbjct: 849  DNWTPFGPLIKFLGNEGPRDLRVHLNAKISDVCTSEGWSIADPRSDQALSLHTHLTNISM 908

Query: 336  ASNVNVEEMYVWLPTNST---FFIQFAWNCFRGPISKVDWARLVWYKVTFPR 190
             S+    + Y W+  N     F     W+  R   + V WAR VW+K   P+
Sbjct: 909  PSDAQDLDSYDWVVDNKVCQGFSAAATWSALRPSSAPVPWARAVWFKGATPK 960



 Score = 33.5 bits (75), Expect(2) = 1e-13
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = -2

Query: 208  QGHIPKVAFITWLVVRGGLATQDKLTQCRFLESMSCVFCRSLVEDKNHLFFSCD 47
            +G  PK AF  W      L T+ +L         +C  C    E ++HLF SCD
Sbjct: 955  KGATPKHAFHLWTAHLDRLPTKVRLASWGMQIDTTCGLCSLHPETRDHLFLSCD 1008