BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia24_contig00018348
         (1909 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI32760.3| unnamed protein product [Vitis vinifera]              631   e-178
ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prun...   630   e-178
ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF,...   628   e-177
ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF,...   627   e-177
ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD ...   625   e-176
ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF,...   622   e-175
ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citr...   614   e-173
ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citr...   609   e-171
ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protei...   608   e-171
ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citr...   605   e-170
ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [...   592   e-166
ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [...   591   e-166
ref|XP_004304450.1| PREDICTED: RNA polymerase sigma factor sigF,...   570   e-159
ref|XP_006588793.1| PREDICTED: RNA polymerase sigma factor sigF,...   560   e-156
gb|EXC16188.1| RNA polymerase sigma factor rpoD [Morus notabilis]     559   e-156
ref|XP_006354351.1| PREDICTED: RNA polymerase sigma factor sigF,...   558   e-156
ref|XP_004246643.1| PREDICTED: RNA polymerase sigma factor sigF,...   557   e-156
ref|XP_006604578.1| PREDICTED: RNA polymerase sigma factor sigF,...   556   e-156
ref|XP_006577029.1| PREDICTED: RNA polymerase sigma factor sigF,...   553   e-154
gb|EYU34473.1| hypothetical protein MIMGU_mgv1a003862mg [Mimulus...   552   e-154

>emb|CBI32760.3| unnamed protein product [Vitis vinifera]
          Length = 561

 Score =  631 bits (1627), Expect = e-178
 Identities = 343/565 (60%), Positives = 412/565 (72%), Gaps = 1/565 (0%)
 Frame = -1

Query: 1780 MEAGXXXXXXXXXXXXXXNCPSTSSSVSVLHEQAASAITSVPTTSIARHFPTSVLLQEQR 1601
            MEAG              +  ++SSSV +LH+Q A A+ S+PTT IAR FPTSVLLQEQR
Sbjct: 1    MEAGTNILSSTPSFPPRTHFRNSSSSVLMLHDQVAPAVASIPTT-IARKFPTSVLLQEQR 59

Query: 1600 DECRSFLHIIKEDRTSQATLDRRQMEAEALVHDEKNCDDSDQYLKDFECQLLRSPGLWYL 1421
            DE R F   +K++RT QATL++RQME   +  DE+N DD +QY+ +FE QLL  PGLWY 
Sbjct: 60   DEYRPFPQALKDERTFQATLEKRQMEI-VVSADEENSDDHNQYMVNFERQLLLQPGLWYS 118

Query: 1420 SPSLQTAG-NPSLALTMQSVPIDTERLMDVKLHEVVNXXXXXXXXXXXXXXXADDSKVFR 1244
             PS QT   +P  +  M+S+  D E  MDVK  +V+                 +++K+  
Sbjct: 119  LPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVSLYENAKLLG 178

Query: 1243 ADLDKSFSSGLGPTSSGNFLLEEEKTVRSTRHLERRSRKRSVPELKSMVQETSSSRKADL 1064
            ADL+ S S  LG  SS N  LEE KTVRSTR LERRS+KR  P  K  V E   SR+A++
Sbjct: 179  ADLEDSPSPSLGAISSPNLPLEE-KTVRSTRLLERRSKKRRNP--KVAVHENHGSRRAEV 235

Query: 1063 KRKISEGFDPNDPLRLFLRSPETRQLLTAKEESVLIAHIQDLIKLEEVKASLQSQFNREP 884
            +RKI+EG+DP DPLRLFL  PETR+LLTAKEES LI  IQ+L++LEEVK  LQS   REP
Sbjct: 236  QRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKREP 295

Query: 883  TLLEWAEAVGLSCRVLQTQLHSGNRCREKLICANFRMVVHIAKHYQGRGLSLQDLMQEGS 704
            T++EWAEAVGLSC+VLQ+QLHSGNR R+KLI AN RMVVHIAK YQGRGL+LQDL+QEGS
Sbjct: 296  TVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGS 355

Query: 703  LGLMKSVAKFKTQAGCRFATYAYWWIRQSVRKAVFQHSRTIRLPDNVYALLGKITEAKRS 524
            +GLM SV KFK  AGCRFA+YAYWWIRQ+VRKA+FQHSRTIRLP+N+Y+LLGK+ EAKR 
Sbjct: 356  MGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKEAKRL 415

Query: 523  FFQEAQRRPTNEELAARVGVTVERLDCLLSSARTPLSMQQPVWTDQATTFQEITADTRVE 344
            F QE    PT EE+A RVG+T+E+L  LL   R PLSMQQPVW DQ TTFQE+TADT +E
Sbjct: 416  FIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVTADTGIE 475

Query: 343  TPEVMVTKQLMRQHVRNLLSILSPKERRIIRMRFGIEGFKQTSLADIGAGFGLSKERVRQ 164
             P+V V KQLMRQHVRNLL +L+PKERRIIR+RFGI      +L++IG  FG SKERVRQ
Sbjct: 476  IPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQ 535

Query: 163  LESRALYKLKQRLGDQGLEDYSSLL 89
            LE RAL+KLKQ L   GLE Y+ LL
Sbjct: 536  LEQRALHKLKQCLSSHGLESYTDLL 560


>ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prunus persica]
            gi|462400636|gb|EMJ06193.1| hypothetical protein
            PRUPE_ppa003513mg [Prunus persica]
          Length = 568

 Score =  630 bits (1626), Expect = e-178
 Identities = 340/546 (62%), Positives = 408/546 (74%), Gaps = 3/546 (0%)
 Frame = -1

Query: 1717 STSSSVSVLHEQAASAITSVPTTSIARHFPTSVLLQEQRDECRSFLHIIKEDRTSQATLD 1538
            S S+SV +LHEQA  A+TSVP TS+ARHFPTSVLLQEQRDE +  LH++KED+TS+A LD
Sbjct: 28   SPSTSVLMLHEQAVPAVTSVPITSVARHFPTSVLLQEQRDEFKPLLHVLKEDKTSEAALD 87

Query: 1537 RRQMEAEALVHDEKNCDDSDQYLKDFECQLLRSPGLWYLSPSLQTAGNPSLALTMQSVPI 1358
            R Q+E  A VH++ + DD    +   + QLL    L   S SLQT   PS  LT++S+  
Sbjct: 88   RMQIETGASVHEDLDIDDFYPLVNSSKPQLLNHDILDVFS-SLQTGAKPSTPLTLESLTT 146

Query: 1357 DTERLMDVKLHEVVNXXXXXXXXXXXXXXXADDSKVFRADLDKSFSSGLGPTSSGNFLLE 1178
             + + MDV+   VV                A+DS+   AD D      LG TS  N+++E
Sbjct: 147  ASNKHMDVEPCNVVALAKKALSASREAASLAEDSQSMGADFDD-----LGYTSLANWIVE 201

Query: 1177 EEKTVRSTRHLERRSRK---RSVPELKSMVQETSSSRKADLKRKISEGFDPNDPLRLFLR 1007
            EEKTVRSTR LERR ++   R VP+ K +  E++S   +D+++KISEGF+PNDPLRLFL 
Sbjct: 202  EEKTVRSTRILERRRKRIKTRKVPKSKVIGHESNSFTGSDVRKKISEGFNPNDPLRLFLW 261

Query: 1006 SPETRQLLTAKEESVLIAHIQDLIKLEEVKASLQSQFNREPTLLEWAEAVGLSCRVLQTQ 827
             PETRQLLTAKEE+ LIA +QDL KLEEVK+ LQ+QF REPTL+EWAEAVG+SC++L++Q
Sbjct: 262  GPETRQLLTAKEEAELIARVQDLFKLEEVKSRLQTQFGREPTLIEWAEAVGISCQILKSQ 321

Query: 826  LHSGNRCREKLICANFRMVVHIAKHYQGRGLSLQDLMQEGSLGLMKSVAKFKTQAGCRFA 647
            L SG   REKLI AN RMVVHIAK YQGRGL LQDLMQEGS+GLMKSV KFK QAGCRFA
Sbjct: 322  LRSGTSSREKLIYANLRMVVHIAKQYQGRGLGLQDLMQEGSMGLMKSVEKFKPQAGCRFA 381

Query: 646  TYAYWWIRQSVRKAVFQHSRTIRLPDNVYALLGKITEAKRSFFQEAQRRPTNEELAARVG 467
            TYAYWWIRQ+VRKA+FQHSRTIRLP+NVY+LLGK+ EAK+S  QE    P  EELA RVG
Sbjct: 382  TYAYWWIRQTVRKAIFQHSRTIRLPENVYSLLGKVLEAKKSCIQEGNHNPNKEELARRVG 441

Query: 466  VTVERLDCLLSSARTPLSMQQPVWTDQATTFQEITADTRVETPEVMVTKQLMRQHVRNLL 287
            +TVE+L+ LL + R PLSMQQPVW DQ TTFQE+TADT VE P+V V KQLMRQHVR+LL
Sbjct: 442  ITVEKLEKLLYATRMPLSMQQPVWADQDTTFQEVTADTGVEIPDVSVAKQLMRQHVRHLL 501

Query: 286  SILSPKERRIIRMRFGIEGFKQTSLADIGAGFGLSKERVRQLESRALYKLKQRLGDQGLE 107
            SIL+ +ER IIR+R+GIE  KQ SL++IG  FGLSKERVRQLESRA  KL+Q LG QGL 
Sbjct: 502  SILNLREREIIRLRYGIEDGKQRSLSEIGGMFGLSKERVRQLESRAFLKLRQSLGSQGLG 561

Query: 106  DYSSLL 89
             Y  LL
Sbjct: 562  AYGPLL 567


>ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X2 [Citrus sinensis]
          Length = 569

 Score =  628 bits (1619), Expect = e-177
 Identities = 330/544 (60%), Positives = 407/544 (74%), Gaps = 1/544 (0%)
 Frame = -1

Query: 1717 STSSSVSVLHEQAASAITSVPTTSIARHFPTSVLLQEQRDECRSFLHIIKEDRTSQATLD 1538
            S+SSSV + +EQ+A A+ SVPT+S+ARHFPTSVLLQEQRDE R  LH+ KED+TSQAT D
Sbjct: 31   SSSSSVLMHNEQSAPAVASVPTSSVARHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSD 90

Query: 1537 RRQMEAEALVHDEKNCDDSDQYLKDFECQLLRSPGLWYLSPSLQTAGNPSLALTMQSVPI 1358
             R ME EA   +EKN  D DQ ++D E Q L  P LW LSP ++   +PS++LTMQS+  
Sbjct: 91   SRNMETEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSN 150

Query: 1357 DTERLMDVKLHEVVNXXXXXXXXXXXXXXXADDSKVFRADL-DKSFSSGLGPTSSGNFLL 1181
            DTE  +D +  + V                A++ K+  A+  D S +S LG      + L
Sbjct: 151  DTEESVDAEPFDAVALARKALSASKEAASLAENPKLNGAEFTDISLTSSLG------YPL 204

Query: 1180 EEEKTVRSTRHLERRSRKRSVPELKSMVQETSSSRKADLKRKISEGFDPNDPLRLFLRSP 1001
            EE KTVRST+ LERRS+KR V + K    ET +SRKA +K+K+SEGFD NDPLRLFL  P
Sbjct: 205  EEVKTVRSTQFLERRSKKRKVSKPKVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGP 264

Query: 1000 ETRQLLTAKEESVLIAHIQDLIKLEEVKASLQSQFNREPTLLEWAEAVGLSCRVLQTQLH 821
            ETR+LLTA EE  LIA IQDLI+LE+ K+ LQSQF REPTL+EWA+A+GLSCR L+++LH
Sbjct: 265  ETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELH 324

Query: 820  SGNRCREKLICANFRMVVHIAKHYQGRGLSLQDLMQEGSLGLMKSVAKFKTQAGCRFATY 641
            SGN  REKLI AN R+VVH+AK YQGRG+ L DL+QEGS+GLMKSV KFK QAGCRFA+Y
Sbjct: 325  SGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEGSMGLMKSVEKFKPQAGCRFASY 384

Query: 640  AYWWIRQSVRKAVFQHSRTIRLPDNVYALLGKITEAKRSFFQEAQRRPTNEELAARVGVT 461
            AYWW+RQ++RKA+FQHSRTIRLP+N+Y LL ++ EAKR + QE    P  E+LA RVG+T
Sbjct: 385  AYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEAKRLYIQEGNHSPDKEDLARRVGIT 444

Query: 460  VERLDCLLSSARTPLSMQQPVWTDQATTFQEITADTRVETPEVMVTKQLMRQHVRNLLSI 281
            VE+L+ L+   R PLSMQQPVW DQ TTFQEITADT VE P++ V KQLMRQHVRNLL++
Sbjct: 445  VEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTL 504

Query: 280  LSPKERRIIRMRFGIEGFKQTSLADIGAGFGLSKERVRQLESRALYKLKQRLGDQGLEDY 101
            L+PKER I+R+RFGIE  K  SL+++G  FGLSKERVRQLESRALY+LKQ LG +    Y
Sbjct: 505  LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGY 564

Query: 100  SSLL 89
            + LL
Sbjct: 565  ADLL 568


>ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X1 [Citrus sinensis]
          Length = 570

 Score =  627 bits (1616), Expect = e-177
 Identities = 329/544 (60%), Positives = 407/544 (74%), Gaps = 1/544 (0%)
 Frame = -1

Query: 1717 STSSSVSVLHEQAASAITSVPTTSIARHFPTSVLLQEQRDECRSFLHIIKEDRTSQATLD 1538
            S+SS+V + +EQ+A A+ SVPT+S+ARHFPTSVLLQEQRDE R  LH+ KED+TSQAT D
Sbjct: 32   SSSSAVLMHNEQSAPAVASVPTSSVARHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSD 91

Query: 1537 RRQMEAEALVHDEKNCDDSDQYLKDFECQLLRSPGLWYLSPSLQTAGNPSLALTMQSVPI 1358
             R ME EA   +EKN  D DQ ++D E Q L  P LW LSP ++   +PS++LTMQS+  
Sbjct: 92   SRNMETEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSN 151

Query: 1357 DTERLMDVKLHEVVNXXXXXXXXXXXXXXXADDSKVFRADL-DKSFSSGLGPTSSGNFLL 1181
            DTE  +D +  + V                A++ K+  A+  D S +S LG      + L
Sbjct: 152  DTEESVDAEPFDAVALARKALSASKEAASLAENPKLNGAEFTDISLTSSLG------YPL 205

Query: 1180 EEEKTVRSTRHLERRSRKRSVPELKSMVQETSSSRKADLKRKISEGFDPNDPLRLFLRSP 1001
            EE KTVRST+ LERRS+KR V + K    ET +SRKA +K+K+SEGFD NDPLRLFL  P
Sbjct: 206  EEVKTVRSTQFLERRSKKRKVSKPKVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGP 265

Query: 1000 ETRQLLTAKEESVLIAHIQDLIKLEEVKASLQSQFNREPTLLEWAEAVGLSCRVLQTQLH 821
            ETR+LLTA EE  LIA IQDLI+LE+ K+ LQSQF REPTL+EWA+A+GLSCR L+++LH
Sbjct: 266  ETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELH 325

Query: 820  SGNRCREKLICANFRMVVHIAKHYQGRGLSLQDLMQEGSLGLMKSVAKFKTQAGCRFATY 641
            SGN  REKLI AN R+VVH+AK YQGRG+ L DL+QEGS+GLMKSV KFK QAGCRFA+Y
Sbjct: 326  SGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEGSMGLMKSVEKFKPQAGCRFASY 385

Query: 640  AYWWIRQSVRKAVFQHSRTIRLPDNVYALLGKITEAKRSFFQEAQRRPTNEELAARVGVT 461
            AYWW+RQ++RKA+FQHSRTIRLP+N+Y LL ++ EAKR + QE    P  E+LA RVG+T
Sbjct: 386  AYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEAKRLYIQEGNHSPDKEDLARRVGIT 445

Query: 460  VERLDCLLSSARTPLSMQQPVWTDQATTFQEITADTRVETPEVMVTKQLMRQHVRNLLSI 281
            VE+L+ L+   R PLSMQQPVW DQ TTFQEITADT VE P++ V KQLMRQHVRNLL++
Sbjct: 446  VEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTL 505

Query: 280  LSPKERRIIRMRFGIEGFKQTSLADIGAGFGLSKERVRQLESRALYKLKQRLGDQGLEDY 101
            L+PKER I+R+RFGIE  K  SL+++G  FGLSKERVRQLESRALY+LKQ LG +    Y
Sbjct: 506  LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGY 565

Query: 100  SSLL 89
            + LL
Sbjct: 566  ADLL 569


>ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
          Length = 572

 Score =  625 bits (1612), Expect = e-176
 Identities = 336/539 (62%), Positives = 402/539 (74%), Gaps = 1/539 (0%)
 Frame = -1

Query: 1702 VSVLHEQAASAITSVPTTSIARHFPTSVLLQEQRDECRSFLHIIKEDRTSQATLDRRQME 1523
            V +LH+Q A A+ S+PTT IAR FPTSVLLQEQRDE R F   +K++RT QATL++RQME
Sbjct: 38   VLMLHDQVAPAVASIPTT-IARKFPTSVLLQEQRDEYRPFPQALKDERTFQATLEKRQME 96

Query: 1522 AEALVHDEKNCDDSDQYLKDFECQLLRSPGLWYLSPSLQTAG-NPSLALTMQSVPIDTER 1346
               +  DE+N DD +QY+ +FE QLL  PGLWY  PS QT   +P  +  M+S+  D E 
Sbjct: 97   I-VVSADEENSDDHNQYMVNFERQLLLQPGLWYSLPSSQTGEKSPFSSSIMKSITTDIEN 155

Query: 1345 LMDVKLHEVVNXXXXXXXXXXXXXXXADDSKVFRADLDKSFSSGLGPTSSGNFLLEEEKT 1166
             MDVK  +V+                 +++K+  ADL+ S S  LG  SS N  LEE KT
Sbjct: 156  SMDVKPCDVLALAKKALSASKQAVSLYENAKLLGADLEDSPSPSLGAISSPNLPLEE-KT 214

Query: 1165 VRSTRHLERRSRKRSVPELKSMVQETSSSRKADLKRKISEGFDPNDPLRLFLRSPETRQL 986
            VRSTR LERRS+KR  P  K  V E   SR+A+++RKI+EG+DP DPLRLFL  PETR+L
Sbjct: 215  VRSTRLLERRSKKRRNP--KVAVHENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKL 272

Query: 985  LTAKEESVLIAHIQDLIKLEEVKASLQSQFNREPTLLEWAEAVGLSCRVLQTQLHSGNRC 806
            LTAKEES LI  IQ+L++LEEVK  LQS   REPT++EWAEAVGLSC+VLQ+QLHSGNR 
Sbjct: 273  LTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRS 332

Query: 805  REKLICANFRMVVHIAKHYQGRGLSLQDLMQEGSLGLMKSVAKFKTQAGCRFATYAYWWI 626
            R+KLI AN RMVVHIAK YQGRGL+LQDL+QEGS+GLM SV KFK  AGCRFA+YAYWWI
Sbjct: 333  RQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWI 392

Query: 625  RQSVRKAVFQHSRTIRLPDNVYALLGKITEAKRSFFQEAQRRPTNEELAARVGVTVERLD 446
            RQ+VRKA+FQHSRTIRLP+N+Y+LLGK+ EAKR F QE    PT EE+A RVG+T+E+L 
Sbjct: 393  RQAVRKAIFQHSRTIRLPENMYSLLGKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQ 452

Query: 445  CLLSSARTPLSMQQPVWTDQATTFQEITADTRVETPEVMVTKQLMRQHVRNLLSILSPKE 266
             LL   R PLSMQQPVW DQ TTFQE+TADT +E P+V V KQLMRQHVRNLL +L+PKE
Sbjct: 453  RLLLHTRMPLSMQQPVWADQDTTFQEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKE 512

Query: 265  RRIIRMRFGIEGFKQTSLADIGAGFGLSKERVRQLESRALYKLKQRLGDQGLEDYSSLL 89
            RRIIR+RFGI      +L++IG  FG SKERVRQLE RAL+KLKQ L   GLE Y+ LL
Sbjct: 513  RRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQRALHKLKQCLSSHGLESYTDLL 571


>ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X3 [Citrus sinensis]
          Length = 561

 Score =  622 bits (1605), Expect = e-175
 Identities = 328/544 (60%), Positives = 402/544 (73%), Gaps = 1/544 (0%)
 Frame = -1

Query: 1717 STSSSVSVLHEQAASAITSVPTTSIARHFPTSVLLQEQRDECRSFLHIIKEDRTSQATLD 1538
            S SSS S     +A A+ SVPT+S+ARHFPTSVLLQEQRDE R  LH+ KED+TSQAT D
Sbjct: 23   SLSSSASSSSSSSAPAVASVPTSSVARHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSD 82

Query: 1537 RRQMEAEALVHDEKNCDDSDQYLKDFECQLLRSPGLWYLSPSLQTAGNPSLALTMQSVPI 1358
             R ME EA   +EKN  D DQ ++D E Q L  P LW LSP ++   +PS++LTMQS+  
Sbjct: 83   SRNMETEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSN 142

Query: 1357 DTERLMDVKLHEVVNXXXXXXXXXXXXXXXADDSKVFRADL-DKSFSSGLGPTSSGNFLL 1181
            DTE  +D +  + V                A++ K+  A+  D S +S LG      + L
Sbjct: 143  DTEESVDAEPFDAVALARKALSASKEAASLAENPKLNGAEFTDISLTSSLG------YPL 196

Query: 1180 EEEKTVRSTRHLERRSRKRSVPELKSMVQETSSSRKADLKRKISEGFDPNDPLRLFLRSP 1001
            EE KTVRST+ LERRS+KR V + K    ET +SRKA +K+K+SEGFD NDPLRLFL  P
Sbjct: 197  EEVKTVRSTQFLERRSKKRKVSKPKVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGP 256

Query: 1000 ETRQLLTAKEESVLIAHIQDLIKLEEVKASLQSQFNREPTLLEWAEAVGLSCRVLQTQLH 821
            ETR+LLTA EE  LIA IQDLI+LE+ K+ LQSQF REPTL+EWA+A+GLSCR L+++LH
Sbjct: 257  ETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELH 316

Query: 820  SGNRCREKLICANFRMVVHIAKHYQGRGLSLQDLMQEGSLGLMKSVAKFKTQAGCRFATY 641
            SGN  REKLI AN R+VVH+AK YQGRG+ L DL+QEGS+GLMKSV KFK QAGCRFA+Y
Sbjct: 317  SGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEGSMGLMKSVEKFKPQAGCRFASY 376

Query: 640  AYWWIRQSVRKAVFQHSRTIRLPDNVYALLGKITEAKRSFFQEAQRRPTNEELAARVGVT 461
            AYWW+RQ++RKA+FQHSRTIRLP+N+Y LL ++ EAKR + QE    P  E+LA RVG+T
Sbjct: 377  AYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEAKRLYIQEGNHSPDKEDLARRVGIT 436

Query: 460  VERLDCLLSSARTPLSMQQPVWTDQATTFQEITADTRVETPEVMVTKQLMRQHVRNLLSI 281
            VE+L+ L+   R PLSMQQPVW DQ TTFQEITADT VE P++ V KQLMRQHVRNLL++
Sbjct: 437  VEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTL 496

Query: 280  LSPKERRIIRMRFGIEGFKQTSLADIGAGFGLSKERVRQLESRALYKLKQRLGDQGLEDY 101
            L+PKER I+R+RFGIE  K  SL+++G  FGLSKERVRQLESRALY+LKQ LG +    Y
Sbjct: 497  LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGY 556

Query: 100  SSLL 89
            + LL
Sbjct: 557  ADLL 560


>ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530788|gb|ESR41971.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 569

 Score =  614 bits (1584), Expect = e-173
 Identities = 327/544 (60%), Positives = 401/544 (73%), Gaps = 1/544 (0%)
 Frame = -1

Query: 1717 STSSSVSVLHEQAASAITSVPTTSIARHFPTSVLLQEQRDECRSFLHIIKEDRTSQATLD 1538
            S+SSSV + +EQ+A A+ SVPT+S+ARHFPTSVLLQEQRDE R  LH+ KED+TSQAT D
Sbjct: 31   SSSSSVLMHNEQSAPAVASVPTSSVARHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSD 90

Query: 1537 RRQMEAEALVHDEKNCDDSDQYLKDFECQLLRSPGLWYLSPSLQTAGNPSLALTMQSVPI 1358
             R ME EA   +EKN  D DQ ++D E Q L  P LW LSP ++   +PS++LTMQS+  
Sbjct: 91   SRNMETEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSN 150

Query: 1357 DTERLMDVKLHEVVNXXXXXXXXXXXXXXXADDSKVFRADL-DKSFSSGLGPTSSGNFLL 1181
            DTE  +D +  + V                A++ K+  A+  D S +S LG      + L
Sbjct: 151  DTEESVDAEPFDAVALARKALSASKEAASLAENPKLNGAEFTDISLTSSLG------YPL 204

Query: 1180 EEEKTVRSTRHLERRSRKRSVPELKSMVQETSSSRKADLKRKISEGFDPNDPLRLFLRSP 1001
            EE KTVRSTR LERRS+KR V + K    ET +SRKA +K+K+SEGFDPNDPLRLFL  P
Sbjct: 205  EEVKTVRSTRFLERRSKKRKVSKPKVTNHETYNSRKASVKKKLSEGFDPNDPLRLFLWGP 264

Query: 1000 ETRQLLTAKEESVLIAHIQDLIKLEEVKASLQSQFNREPTLLEWAEAVGLSCRVLQTQLH 821
            ETR+LLTA EE  LIA IQDLI+LE+ K+ LQSQF REPTL+       LSCR L+++LH
Sbjct: 265  ETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLILKLLRFHLSCRDLKSELH 324

Query: 820  SGNRCREKLICANFRMVVHIAKHYQGRGLSLQDLMQEGSLGLMKSVAKFKTQAGCRFATY 641
            SGN  REKLI AN R+VVH+AK YQGRG+ L DL+QEGS+GLMKSV KFK QAGCRFA+Y
Sbjct: 325  SGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEGSMGLMKSVEKFKPQAGCRFASY 384

Query: 640  AYWWIRQSVRKAVFQHSRTIRLPDNVYALLGKITEAKRSFFQEAQRRPTNEELAARVGVT 461
            AYWW+RQ++RKA+FQHSRTIRLP+N+Y LL ++ EAKR + QE    P  E+LA RVG+T
Sbjct: 385  AYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEAKRLYIQEGNHSPDKEDLARRVGIT 444

Query: 460  VERLDCLLSSARTPLSMQQPVWTDQATTFQEITADTRVETPEVMVTKQLMRQHVRNLLSI 281
            VE+L+ L+   R PLSMQQPVW DQ TTFQEITADT VE P++ V KQLMRQHVRNLL++
Sbjct: 445  VEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTL 504

Query: 280  LSPKERRIIRMRFGIEGFKQTSLADIGAGFGLSKERVRQLESRALYKLKQRLGDQGLEDY 101
            L+PKER I+R+RFGIE  K  SL+++G  FGLSKERVRQLESRALY+LKQ LG +    Y
Sbjct: 505  LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGY 564

Query: 100  SSLL 89
            + LL
Sbjct: 565  ADLL 568


>ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530789|gb|ESR41972.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 561

 Score =  609 bits (1570), Expect = e-171
 Identities = 325/544 (59%), Positives = 396/544 (72%), Gaps = 1/544 (0%)
 Frame = -1

Query: 1717 STSSSVSVLHEQAASAITSVPTTSIARHFPTSVLLQEQRDECRSFLHIIKEDRTSQATLD 1538
            S SSS S     +A A+ SVPT+S+ARHFPTSVLLQEQRDE R  LH+ KED+TSQAT D
Sbjct: 23   SLSSSASSSSSSSAPAVASVPTSSVARHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSD 82

Query: 1537 RRQMEAEALVHDEKNCDDSDQYLKDFECQLLRSPGLWYLSPSLQTAGNPSLALTMQSVPI 1358
             R ME EA   +EKN  D DQ ++D E Q L  P LW LSP ++   +PS++LTMQS+  
Sbjct: 83   SRNMETEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSN 142

Query: 1357 DTERLMDVKLHEVVNXXXXXXXXXXXXXXXADDSKVFRADL-DKSFSSGLGPTSSGNFLL 1181
            DTE  +D +  + V                A++ K+  A+  D S +S LG      + L
Sbjct: 143  DTEESVDAEPFDAVALARKALSASKEAASLAENPKLNGAEFTDISLTSSLG------YPL 196

Query: 1180 EEEKTVRSTRHLERRSRKRSVPELKSMVQETSSSRKADLKRKISEGFDPNDPLRLFLRSP 1001
            EE KTVRSTR LERRS+KR V + K    ET +SRKA +K+K+SEGFDPNDPLRLFL  P
Sbjct: 197  EEVKTVRSTRFLERRSKKRKVSKPKVTNHETYNSRKASVKKKLSEGFDPNDPLRLFLWGP 256

Query: 1000 ETRQLLTAKEESVLIAHIQDLIKLEEVKASLQSQFNREPTLLEWAEAVGLSCRVLQTQLH 821
            ETR+LLTA EE  LIA IQDLI+LE+ K+ LQSQF REPTL+       LSCR L+++LH
Sbjct: 257  ETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLILKLLRFHLSCRDLKSELH 316

Query: 820  SGNRCREKLICANFRMVVHIAKHYQGRGLSLQDLMQEGSLGLMKSVAKFKTQAGCRFATY 641
            SGN  REKLI AN R+VVH+AK YQGRG+ L DL+QEGS+GLMKSV KFK QAGCRFA+Y
Sbjct: 317  SGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEGSMGLMKSVEKFKPQAGCRFASY 376

Query: 640  AYWWIRQSVRKAVFQHSRTIRLPDNVYALLGKITEAKRSFFQEAQRRPTNEELAARVGVT 461
            AYWW+RQ++RKA+FQHSRTIRLP+N+Y LL ++ EAKR + QE    P  E+LA RVG+T
Sbjct: 377  AYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEAKRLYIQEGNHSPDKEDLARRVGIT 436

Query: 460  VERLDCLLSSARTPLSMQQPVWTDQATTFQEITADTRVETPEVMVTKQLMRQHVRNLLSI 281
            VE+L+ L+   R PLSMQQPVW DQ TTFQEITADT VE P++ V KQLMRQHVRNLL++
Sbjct: 437  VEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTL 496

Query: 280  LSPKERRIIRMRFGIEGFKQTSLADIGAGFGLSKERVRQLESRALYKLKQRLGDQGLEDY 101
            L+PKER I+R+RFGIE  K  SL+++G  FGLSKERVRQLESRALY+LKQ LG +    Y
Sbjct: 497  LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGY 556

Query: 100  SSLL 89
            + LL
Sbjct: 557  ADLL 560


>ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protein [Populus trichocarpa]
            gi|550336129|gb|ERP59223.1| RNA POLYMERASE SIGMA-70
            FACTOR family protein [Populus trichocarpa]
          Length = 535

 Score =  608 bits (1567), Expect = e-171
 Identities = 324/543 (59%), Positives = 393/543 (72%)
 Frame = -1

Query: 1717 STSSSVSVLHEQAASAITSVPTTSIARHFPTSVLLQEQRDECRSFLHIIKEDRTSQATLD 1538
            S +SSV +L EQA  A++S+PTTS A+HFPTSVLLQEQRDE R   +I KEDR SQATLD
Sbjct: 23   SLTSSVLILREQATPAVSSIPTTSTAQHFPTSVLLQEQRDEFRPLQNIFKEDRASQATLD 82

Query: 1537 RRQMEAEALVHDEKNCDDSDQYLKDFECQLLRSPGLWYLSPSLQTAGNPSLALTMQSVPI 1358
            RR+ E     H+ K+ D+ DQ +++FE QL   P  W L                     
Sbjct: 83   RRKTEIGTSGHEGKDSDELDQLVENFEYQLHHWPAYWNL--------------------- 121

Query: 1357 DTERLMDVKLHEVVNXXXXXXXXXXXXXXXADDSKVFRADLDKSFSSGLGPTSSGNFLLE 1178
             T++L+DV+   V+N               AD++     DLD      L  TSS +F LE
Sbjct: 122  -TDKLIDVEPTNVINLAKRALSASKHAAFLADNN----TDLDN-----LASTSSSSFSLE 171

Query: 1177 EEKTVRSTRHLERRSRKRSVPELKSMVQETSSSRKADLKRKISEGFDPNDPLRLFLRSPE 998
            E K VRS RHL R+S  R  P+ K ++ ET  S+ AD+++++S+GFDPNDPLRLFL  PE
Sbjct: 172  EVKIVRSRRHLARQSLNRRAPKTKDLIFETYDSKSADVQKRLSQGFDPNDPLRLFLWGPE 231

Query: 997  TRQLLTAKEESVLIAHIQDLIKLEEVKASLQSQFNREPTLLEWAEAVGLSCRVLQTQLHS 818
            T+QLLTAKEE  LIA IQDL+ LE VK  L+SQF REPTL+EWA+AVGLSC VL+ QLHS
Sbjct: 232  TKQLLTAKEEFELIAQIQDLMNLEGVKNRLESQFGREPTLVEWAQAVGLSCHVLKLQLHS 291

Query: 817  GNRCREKLICANFRMVVHIAKHYQGRGLSLQDLMQEGSLGLMKSVAKFKTQAGCRFATYA 638
            GNR REKLI AN RMVVHIAK YQ RGL LQDL+QEG++GLMKS+ KFK QAGCRFATYA
Sbjct: 292  GNRSREKLINANLRMVVHIAKRYQNRGLGLQDLLQEGTVGLMKSIEKFKPQAGCRFATYA 351

Query: 637  YWWIRQSVRKAVFQHSRTIRLPDNVYALLGKITEAKRSFFQEAQRRPTNEELAARVGVTV 458
            YWWIRQ++ KA+FQHSRTIRLP+NVY LLGK+ EAKRS+ QE   +PT EE+A RVG+ +
Sbjct: 352  YWWIRQTITKAIFQHSRTIRLPENVYGLLGKVMEAKRSYIQEGNHQPTAEEIARRVGIAI 411

Query: 457  ERLDCLLSSARTPLSMQQPVWTDQATTFQEITADTRVETPEVMVTKQLMRQHVRNLLSIL 278
            ++L+ LL   RTPLSMQQ VW+DQ TTFQEITADT +E P++ V KQLMR+H+R LL+IL
Sbjct: 412  DKLEKLLCFTRTPLSMQQTVWSDQNTTFQEITADTEIEIPDMSVAKQLMRKHIRGLLNIL 471

Query: 277  SPKERRIIRMRFGIEGFKQTSLADIGAGFGLSKERVRQLESRALYKLKQRLGDQGLEDYS 98
            S KERRIIR+RFGIE  KQ SL++IG  FGLSKERVRQLESRALYKLKQ +G  GL+ Y+
Sbjct: 472  SLKERRIIRLRFGIEDGKQKSLSEIGNVFGLSKERVRQLESRALYKLKQCVGSHGLDAYA 531

Query: 97   SLL 89
             LL
Sbjct: 532  DLL 534


>ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530787|gb|ESR41970.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 558

 Score =  605 bits (1560), Expect = e-170
 Identities = 324/544 (59%), Positives = 397/544 (72%), Gaps = 1/544 (0%)
 Frame = -1

Query: 1717 STSSSVSVLHEQAASAITSVPTTSIARHFPTSVLLQEQRDECRSFLHIIKEDRTSQATLD 1538
            S SSS S     ++S++ SVPT+S+ARHFPTSVLLQEQRDE R  LH+ KED+TSQAT D
Sbjct: 23   SLSSSAS---SSSSSSVASVPTSSVARHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSD 79

Query: 1537 RRQMEAEALVHDEKNCDDSDQYLKDFECQLLRSPGLWYLSPSLQTAGNPSLALTMQSVPI 1358
             R ME EA   +EKN  D DQ ++D E Q L  P LW LSP ++   +PS++LTMQS+  
Sbjct: 80   SRNMETEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSN 139

Query: 1357 DTERLMDVKLHEVVNXXXXXXXXXXXXXXXADDSKVFRADL-DKSFSSGLGPTSSGNFLL 1181
            DTE  +D +  + V                A++ K+  A+  D S +S LG      + L
Sbjct: 140  DTEESVDAEPFDAVALARKALSASKEAASLAENPKLNGAEFTDISLTSSLG------YPL 193

Query: 1180 EEEKTVRSTRHLERRSRKRSVPELKSMVQETSSSRKADLKRKISEGFDPNDPLRLFLRSP 1001
            EE KTVRSTR LERRS+KR V + K    ET +SRKA +K+K+SEGFDPNDPLRLFL  P
Sbjct: 194  EEVKTVRSTRFLERRSKKRKVSKPKVTNHETYNSRKASVKKKLSEGFDPNDPLRLFLWGP 253

Query: 1000 ETRQLLTAKEESVLIAHIQDLIKLEEVKASLQSQFNREPTLLEWAEAVGLSCRVLQTQLH 821
            ETR+LLTA EE  LIA IQDLI+LE+ K+ LQSQF REPTL+       LSCR L+++LH
Sbjct: 254  ETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLILKLLRFHLSCRDLKSELH 313

Query: 820  SGNRCREKLICANFRMVVHIAKHYQGRGLSLQDLMQEGSLGLMKSVAKFKTQAGCRFATY 641
            SGN  REKLI AN R+VVH+AK YQGRG+ L DL+QEGS+GLMKSV KFK QAGCRFA+Y
Sbjct: 314  SGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEGSMGLMKSVEKFKPQAGCRFASY 373

Query: 640  AYWWIRQSVRKAVFQHSRTIRLPDNVYALLGKITEAKRSFFQEAQRRPTNEELAARVGVT 461
            AYWW+RQ++RKA+FQHSRTIRLP+N+Y LL ++ EAKR + QE    P  E+LA RVG+T
Sbjct: 374  AYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEAKRLYIQEGNHSPDKEDLARRVGIT 433

Query: 460  VERLDCLLSSARTPLSMQQPVWTDQATTFQEITADTRVETPEVMVTKQLMRQHVRNLLSI 281
            VE+L+ L+   R PLSMQQPVW DQ TTFQEITADT VE P++ V KQLMRQHVRNLL++
Sbjct: 434  VEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTL 493

Query: 280  LSPKERRIIRMRFGIEGFKQTSLADIGAGFGLSKERVRQLESRALYKLKQRLGDQGLEDY 101
            L+PKER I+R+RFGIE  K  SL+++G  FGLSKERVRQLESRALY+LKQ LG +    Y
Sbjct: 494  LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGY 553

Query: 100  SSLL 89
            + LL
Sbjct: 554  ADLL 557


>ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [Theobroma cacao]
            gi|508715981|gb|EOY07878.1| RNA polymerase sigma factor
            rpoD, putative [Theobroma cacao]
          Length = 568

 Score =  592 bits (1526), Expect = e-166
 Identities = 317/547 (57%), Positives = 399/547 (72%), Gaps = 4/547 (0%)
 Frame = -1

Query: 1717 STSSSVSVLHEQAASAITSVPTTSIARHFPTSVLLQEQRDECRSF--LHIIKEDRTSQAT 1544
            ++SSSV + HEQAA A TS+P TS+ARHFPTSVLLQEQRD+ R    LH  KED+     
Sbjct: 27   TSSSSVLMFHEQAAPAATSIPITSVARHFPTSVLLQEQRDDYRPLPVLHFFKEDKAYPGA 86

Query: 1543 LDRRQMEAEALVHDEKNCDDSDQYLKDFECQLLRSPGLWYLSPSLQTAGNPSLALTMQSV 1364
             D++Q+E  A +++E   ++  Q    FE +LL+ P L  L   L++  NPS    MQSV
Sbjct: 87   TDKQQIENGASLNEENASNNFGQL--GFEKKLLQWPDLTQLLSLLESEENPSSTSNMQSV 144

Query: 1363 PIDTERLMDVKLHEVVNXXXXXXXXXXXXXXXADDSKVFRADLDKSFSSGLGPTSSGNFL 1184
              DT+ ++DV+   +V                ++D K+   DLD S S+ LG  +S    
Sbjct: 145  AADTKEIVDVEPSNIVALAKKALSASKQAASLSEDLKL---DLDDSLSNSLGSANSCTLP 201

Query: 1183 LEEEK--TVRSTRHLERRSRKRSVPELKSMVQETSSSRKADLKRKISEGFDPNDPLRLFL 1010
            +E+E+  TVRSTR LER+S++R V + K  ++ET SSR+ D++RK+SEGFDPNDPLRLFL
Sbjct: 202  VEKEEVVTVRSTRRLERQSKRRRV-QPKVTIRETYSSRRTDVRRKLSEGFDPNDPLRLFL 260

Query: 1009 RSPETRQLLTAKEESVLIAHIQDLIKLEEVKASLQSQFNREPTLLEWAEAVGLSCRVLQT 830
              PET+QLLTAKEES L   +Q+L++LE+VK+ LQSQF REPTL+EWAEA+GL C  LQ 
Sbjct: 261  WGPETKQLLTAKEESELSNQVQNLMRLEKVKSKLQSQFGREPTLVEWAEAIGLRCSALQA 320

Query: 829  QLHSGNRCREKLICANFRMVVHIAKHYQGRGLSLQDLMQEGSLGLMKSVAKFKTQAGCRF 650
            +LHSGN  R+KLI AN RMVVHIAK YQ RGLSLQDL+QEGS+GLMKSV +FK Q GCRF
Sbjct: 321  ELHSGNSSRDKLIYANLRMVVHIAKQYQSRGLSLQDLLQEGSMGLMKSVERFKPQVGCRF 380

Query: 649  ATYAYWWIRQSVRKAVFQHSRTIRLPDNVYALLGKITEAKRSFFQEAQRRPTNEELAARV 470
            ATYAYWWIRQ++RK++ QHSRT+RLP+NV+ LL K+ +AK+S+ +E    P+ EELA RV
Sbjct: 381  ATYAYWWIRQTIRKSIMQHSRTVRLPENVHTLLSKVLDAKKSYIREGNHCPSKEELARRV 440

Query: 469  GVTVERLDCLLSSARTPLSMQQPVWTDQATTFQEITADTRVETPEVMVTKQLMRQHVRNL 290
            G+TVE+LD LL + R PLSMQQ VW DQ  TFQE+T DT +E P+V V KQLMRQHVRNL
Sbjct: 441  GITVEKLDKLLFTTRMPLSMQQSVWVDQDITFQEVTPDTGIEIPDVSVAKQLMRQHVRNL 500

Query: 289  LSILSPKERRIIRMRFGIEGFKQTSLADIGAGFGLSKERVRQLESRALYKLKQRLGDQGL 110
            LS+LSP+ER II++RFGIE  K+ SL++IG  FGLSKERVRQLESRALYKLKQ L   GL
Sbjct: 501  LSVLSPRERTIIKLRFGIEESKENSLSEIGNMFGLSKERVRQLESRALYKLKQCLNKHGL 560

Query: 109  EDYSSLL 89
              Y  LL
Sbjct: 561  GAYVDLL 567


>ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223541372|gb|EEF42923.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 548

 Score =  591 bits (1524), Expect = e-166
 Identities = 321/538 (59%), Positives = 385/538 (71%)
 Frame = -1

Query: 1702 VSVLHEQAASAITSVPTTSIARHFPTSVLLQEQRDECRSFLHIIKEDRTSQATLDRRQME 1523
            V +LHEQA  A+TS PTTSIAR+FPTSVLLQEQRDE R  L+I KED+T QAT+D +QM+
Sbjct: 35   VFMLHEQAVPAVTSAPTTSIARNFPTSVLLQEQRDEFRPLLNIFKEDKTFQATVDTKQMD 94

Query: 1522 AEALVHDEKNCDDSDQYLKDFECQLLRSPGLWYLSPSLQTAGNPSLALTMQSVPIDTERL 1343
                        D +    D   QL+    L             S +LTMQS+  +T+ L
Sbjct: 95   P--------GTSDQEGICSDVLDQLILHSNL-------------SWSLTMQSITTNTDEL 133

Query: 1342 MDVKLHEVVNXXXXXXXXXXXXXXXADDSKVFRADLDKSFSSGLGPTSSGNFLLEEEKTV 1163
            M V+   V++               A       A+LD + S+GL PT   NF LEE KTV
Sbjct: 134  MVVEPTNVIDLARKALSASKEAALLAQKC----ANLDDTVSTGLEPTDLSNFSLEEVKTV 189

Query: 1162 RSTRHLERRSRKRSVPELKSMVQETSSSRKADLKRKISEGFDPNDPLRLFLRSPETRQLL 983
            RSTR LER+S+ R V + K +  E  SSR+A +++KI+EGFDP DPLRLFL  PET+QLL
Sbjct: 190  RSTRRLERQSKNRRVTKTKEIFHEPYSSRRAGVQKKINEGFDPKDPLRLFLWGPETKQLL 249

Query: 982  TAKEESVLIAHIQDLIKLEEVKASLQSQFNREPTLLEWAEAVGLSCRVLQTQLHSGNRCR 803
            TAKEES LI  +QDL+ LE VK   + QF R+PTL+EWA+AVGLS  V+Q+QLHSGNR R
Sbjct: 250  TAKEESELIGQVQDLMSLENVKEKFKLQFGRDPTLVEWADAVGLSYSVMQSQLHSGNRSR 309

Query: 802  EKLICANFRMVVHIAKHYQGRGLSLQDLMQEGSLGLMKSVAKFKTQAGCRFATYAYWWIR 623
            EKLI AN RMVVHIAK YQGRGLSLQDL+QEGS+GLMKS+ KFK Q GCRFATYAYWWIR
Sbjct: 310  EKLINANLRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSIEKFKPQVGCRFATYAYWWIR 369

Query: 622  QSVRKAVFQHSRTIRLPDNVYALLGKITEAKRSFFQEAQRRPTNEELAARVGVTVERLDC 443
            Q+VRKA+FQHSRTIRLP+NVY  LGK++EAKRS+  E    PT EELA R+G+T  RL+ 
Sbjct: 370  QTVRKAIFQHSRTIRLPENVYHTLGKVSEAKRSYIMEGNHNPTKEELAKRIGITTVRLER 429

Query: 442  LLSSARTPLSMQQPVWTDQATTFQEITADTRVETPEVMVTKQLMRQHVRNLLSILSPKER 263
            LL  AR PLSMQQ VW DQ TTFQEITAD  VE PE+ V KQLMR+HV +LL+IL+P+ER
Sbjct: 430  LLYMARMPLSMQQTVWADQETTFQEITADIEVEIPELCVAKQLMRKHVLSLLNILNPRER 489

Query: 262  RIIRMRFGIEGFKQTSLADIGAGFGLSKERVRQLESRALYKLKQRLGDQGLEDYSSLL 89
            +IIR+R+GIE  K+ SL++IG+ FGLSKERVRQLESRALYKLKQ L   GLE Y+ LL
Sbjct: 490  KIIRLRYGIEDGKKKSLSEIGSVFGLSKERVRQLESRALYKLKQCLASHGLEAYADLL 547


>ref|XP_004304450.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Fragaria vesca subsp. vesca]
          Length = 554

 Score =  570 bits (1468), Expect = e-159
 Identities = 316/546 (57%), Positives = 387/546 (70%), Gaps = 3/546 (0%)
 Frame = -1

Query: 1717 STSSSVSVLHEQAASAITSVPTTSIARHFPTSVLLQEQRDECRSFLHIIKEDRTSQATLD 1538
            S S+SV +LHEQAA A+TSVPT+ I RHFPTSVLLQEQRDE +  LHI KE++ SQATLD
Sbjct: 28   SPSTSVLMLHEQAAPAVTSVPTSFITRHFPTSVLLQEQRDEFKPLLHIFKEEKASQATLD 87

Query: 1537 RRQMEAEALVHDEKNCDDSDQYLKDFECQLLRSPGLWYLSPSLQTAGNPSLALTMQSVPI 1358
            R Q+E      ++ N DD  + +KDF  QL       +++PS     +P+ +    +   
Sbjct: 88   RIQIE-NTTAEEDFNIDDFYKLVKDFR-QL-------HVTPSQIGENSPTGSALESNTTA 138

Query: 1357 DTERLMDVKLHEVVNXXXXXXXXXXXXXXXADDSKVFRADLDKSFSSGLGPTSSGNFLLE 1178
            +    MDV+  +V+                A+ SK   A L++S S GLG          
Sbjct: 139  NVH--MDVEPSDVLTLAKHALSASLEAASLAETSKSISAGLNESTSLGLG---------W 187

Query: 1177 EEKTVRSTRHLERRSR---KRSVPELKSMVQETSSSRKADLKRKISEGFDPNDPLRLFLR 1007
            EE+TVRST+ LERR +   KR++   K    E SSS  +DL+RK  EG +PNDPLRLFL 
Sbjct: 188  EEETVRSTQLLERRRKRLKKRNLLNSKVPNYENSSSNSSDLRRKYREGLNPNDPLRLFLW 247

Query: 1006 SPETRQLLTAKEESVLIAHIQDLIKLEEVKASLQSQFNREPTLLEWAEAVGLSCRVLQTQ 827
             PETRQLLT KEE+ LIA +QD+ KLE VK+ LQSQF REPTL+EWAEAVG+SC++LQ+Q
Sbjct: 248  GPETRQLLTLKEETELIARVQDVFKLEAVKSRLQSQFGREPTLIEWAEAVGISCQMLQSQ 307

Query: 826  LHSGNRCREKLICANFRMVVHIAKHYQGRGLSLQDLMQEGSLGLMKSVAKFKTQAGCRFA 647
            L  G   REKLI +N RMVVHIAK YQGRGL LQDL+QEGS+GLMKSV KFK QAGCRFA
Sbjct: 308  LRCGTSSREKLIYSNLRMVVHIAKQYQGRGLGLQDLLQEGSMGLMKSVEKFKPQAGCRFA 367

Query: 646  TYAYWWIRQSVRKAVFQHSRTIRLPDNVYALLGKITEAKRSFFQEAQRRPTNEELAARVG 467
            TYAYWW+RQ++RKA+FQHSRTIRLP+NVY LLGK+ EAK+S+ QE  + P+ EELA RVG
Sbjct: 368  TYAYWWVRQTIRKAIFQHSRTIRLPENVYTLLGKVLEAKKSYIQEGNQNPSREELARRVG 427

Query: 466  VTVERLDCLLSSARTPLSMQQPVWTDQATTFQEITADTRVETPEVMVTKQLMRQHVRNLL 287
            ++VE+L  LL   R P+SMQQ VW DQ TTFQE+TADT +E P++ V KQLMRQHVRNLL
Sbjct: 428  MSVEKLGKLLYCTRMPVSMQQTVWADQDTTFQEVTADTGIEIPDLSVAKQLMRQHVRNLL 487

Query: 286  SILSPKERRIIRMRFGIEGFKQTSLADIGAGFGLSKERVRQLESRALYKLKQRLGDQGLE 107
              L  +ER+IIR+R+GIE  KQ SL +IG  FGLSKERVRQLESRA  KLK+ LG QGL 
Sbjct: 488  HTLEKRERQIIRLRYGIEDGKQRSLTEIGEIFGLSKERVRQLESRAFLKLKESLGSQGLG 547

Query: 106  DYSSLL 89
             Y+ LL
Sbjct: 548  AYAPLL 553


>ref|XP_006588793.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Glycine max]
          Length = 575

 Score =  560 bits (1442), Expect = e-156
 Identities = 310/549 (56%), Positives = 383/549 (69%), Gaps = 6/549 (1%)
 Frame = -1

Query: 1717 STSSSVSVLHEQAASAITSVPTTSIARHFPTSVLLQEQRDECRSFLHIIKEDRTSQATLD 1538
            S++SSV +LHEQA+  + S  +   A++FP SVLL EQRDE R  LH+ KED+TSQA L 
Sbjct: 29   SSTSSVLMLHEQASPTVASWSSNFSAQNFPASVLLPEQRDEYRPLLHMSKEDKTSQAMLS 88

Query: 1537 RRQMEAEALVHDEKNCDDSDQYLKDFECQLLRSPGLWYLSPSLQTAGNPSLALTMQSVPI 1358
             RQM+    VH+E N +++DQ + DF   L   P L YL  S Q  G  + + T++ V +
Sbjct: 89   TRQMDT-VTVHEENNTENADQVVLDFRKHLHHWPNLQYLLTSSQI-GEVAASSTLEHVSV 146

Query: 1357 DTERLMDVKLHEVVNXXXXXXXXXXXXXXXADDSKVFRADLDKSFSSGLGPTSSGNFLLE 1178
            D ER  +      V+                +D K  +AD D S   GL  TS  +  + 
Sbjct: 147  DLERRPNGVQFNGVSLAKKALSTSKQESSVVEDLKSIKAD-DDSIPFGLASTSLADPSIG 205

Query: 1177 EEKTVRSTRHLERRSRKRSVPELKSMVQETSSSRKADLKRKI------SEGFDPNDPLRL 1016
              KTVRSTR LERRS++R VP+ K +  ET  +RK D + K+      +E  D +DPLRL
Sbjct: 206  RNKTVRSTRLLERRSKQRKVPKSKVIDDETYLARKDDAQEKLRAEKKKNEELDQDDPLRL 265

Query: 1015 FLRSPETRQLLTAKEESVLIAHIQDLIKLEEVKASLQSQFNREPTLLEWAEAVGLSCRVL 836
            FL  PET+QLLT ++ES LI+ IQDL++LEEVK +LQSQF REPT+ EWAE  GL+CR+L
Sbjct: 266  FLWGPETKQLLTLEQESQLISQIQDLLRLEEVKTNLQSQFGREPTMAEWAEGAGLNCRLL 325

Query: 835  QTQLHSGNRCREKLICANFRMVVHIAKHYQGRGLSLQDLMQEGSLGLMKSVAKFKTQAGC 656
            Q+QLHSGNR REKLI AN RMVVH+AK YQGRGLSLQDL+QEGS+GLMKSV KF   AG 
Sbjct: 326  QSQLHSGNRSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQEGSMGLMKSVEKFNPLAGS 385

Query: 655  RFATYAYWWIRQSVRKAVFQHSRTIRLPDNVYALLGKITEAKRSFFQEAQRRPTNEELAA 476
            RF  YA+WWIRQ++RKAVF+HSRTIRLP+ V+ LLGK+ EAK+ + QE    PT EELA 
Sbjct: 386  RFGNYAFWWIRQAIRKAVFRHSRTIRLPEKVFILLGKVMEAKKLYIQEGNLHPTKEELAR 445

Query: 475  RVGVTVERLDCLLSSARTPLSMQQPVWTDQATTFQEITADTRVETPEVMVTKQLMRQHVR 296
            RVGVTVE++D LL SAR P+SMQQ VW DQ TTFQEITAD  VE  +V V KQLMR+HV 
Sbjct: 446  RVGVTVEKIDKLLFSARIPISMQQTVWADQNTTFQEITADPTVEATDVTVEKQLMRRHVL 505

Query: 295  NLLSILSPKERRIIRMRFGIEGFKQTSLADIGAGFGLSKERVRQLESRALYKLKQRLGDQ 116
            N+LS+L PKERRIIR+R+G E  +Q SL++IG  FGLSKERVRQLE RALYKLK+ L  Q
Sbjct: 506  NVLSVLHPKERRIIRLRYGFEDGEQKSLSEIGDIFGLSKERVRQLEIRALYKLKKCLVKQ 565

Query: 115  GLEDYSSLL 89
            GL+ Y  LL
Sbjct: 566  GLDAYVDLL 574


>gb|EXC16188.1| RNA polymerase sigma factor rpoD [Morus notabilis]
          Length = 543

 Score =  559 bits (1441), Expect = e-156
 Identities = 300/541 (55%), Positives = 382/541 (70%)
 Frame = -1

Query: 1711 SSSVSVLHEQAASAITSVPTTSIARHFPTSVLLQEQRDECRSFLHIIKEDRTSQATLDRR 1532
            SSS +      A+ ITS+P TSIA+ F TSVLLQEQRDE +  L + KED+TSQ  L+RR
Sbjct: 26   SSSSASTSANVATGITSMPATSIAQPFSTSVLLQEQRDEFKPLLRVNKEDKTSQGVLNRR 85

Query: 1531 QMEAEALVHDEKNCDDSDQYLKDFECQLLRSPGLWYLSPSLQTAGNPSLALTMQSVPIDT 1352
            Q ++ ALVH++   +D +Q++ +FE   +  PG W++ PSL+T    S +LTM++     
Sbjct: 86   QNDSGALVHED-TLEDYNQFVWEFERPSVHWPGFWHVLPSLKTKVKLSSSLTMETTMGSC 144

Query: 1351 ERLMDVKLHEVVNXXXXXXXXXXXXXXXADDSKVFRADLDKSFSSGLGPTSSGNFLLEEE 1172
             + +DV++ + +                A++SK+   D D   S         +FL + +
Sbjct: 145  TKDVDVEVSDAIALAKKALMASKEAASLAEESKLVGTDSDDMLSV--------SFLGKGD 196

Query: 1171 KTVRSTRHLERRSRKRSVPELKSMVQETSSSRKADLKRKISEGFDPNDPLRLFLRSPETR 992
            KTVRSTR LERRS++R VPE   +  E   +R AD+++++SEG + +DPLRLFL  PETR
Sbjct: 197  KTVRSTRLLERRSKRRKVPESSVLFYENPRNRAADIRKRLSEGLNSDDPLRLFLAGPETR 256

Query: 991  QLLTAKEESVLIAHIQDLIKLEEVKASLQSQFNREPTLLEWAEAVGLSCRVLQTQLHSGN 812
            QLLT +EES LIA +QDLIKLE+VKA LQS+F REPTL+EWAEAVGLSCR+LQ+Q+ SG 
Sbjct: 257  QLLTFEEESELIAQVQDLIKLEQVKARLQSEFGREPTLVEWAEAVGLSCRILQSQIQSGT 316

Query: 811  RCREKLICANFRMVVHIAKHYQGRGLSLQDLMQEGSLGLMKSVAKFKTQAGCRFATYAYW 632
              REKLICAN R+VVHIAK YQGRG+ +QDLMQEGS+GLMKSV KFK Q GCRFA+YAYW
Sbjct: 317  SSREKLICANLRLVVHIAKQYQGRGVGIQDLMQEGSMGLMKSVEKFKPQVGCRFASYAYW 376

Query: 631  WIRQSVRKAVFQHSRTIRLPDNVYALLGKITEAKRSFFQEAQRRPTNEELAARVGVTVER 452
            WIRQ+               +NVY LLGK+ EAKRS  QE    P+ E+LA RVG+TVE+
Sbjct: 377  WIRQT---------------ENVYTLLGKVLEAKRSSIQEGNHNPSKEDLATRVGITVEK 421

Query: 451  LDCLLSSARTPLSMQQPVWTDQATTFQEITADTRVETPEVMVTKQLMRQHVRNLLSILSP 272
            L+ LL   R PLSMQQPVW DQ+TTFQE+TADTR+E P+V V KQ+MRQHVR LL  L+ 
Sbjct: 422  LNKLLYMTRIPLSMQQPVWADQSTTFQEVTADTRIEIPDVSVAKQMMRQHVRGLLRSLNV 481

Query: 271  KERRIIRMRFGIEGFKQTSLADIGAGFGLSKERVRQLESRALYKLKQRLGDQGLEDYSSL 92
            +ER+IIR+RFGIE   Q SL++IG  +GLSKERVRQLESRALYKLKQ LG Q LE Y+ L
Sbjct: 482  RERQIIRLRFGIEDGNQKSLSEIGRMYGLSKERVRQLESRALYKLKQCLGSQDLEAYADL 541

Query: 91   L 89
            +
Sbjct: 542  I 542


>ref|XP_006354351.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Solanum tuberosum]
          Length = 562

 Score =  558 bits (1439), Expect = e-156
 Identities = 302/542 (55%), Positives = 381/542 (70%)
 Frame = -1

Query: 1711 SSSVSVLHEQAASAITSVPTTSIARHFPTSVLLQEQRDECRSFLHIIKEDRTSQATLDRR 1532
            SSSV +LHE AA  ++SVP   + RH P S +  EQ+ E R  LH++KE++TS AT+DRR
Sbjct: 25   SSSVLMLHEHAAPVLSSVPHAYLGRHVPASAIGPEQQFENRLQLHLVKEEKTSLATIDRR 84

Query: 1531 QMEAEALVHDEKNCDDSDQYLKDFECQLLRSPGLWYLSPSLQTAGNPSLALTMQSVPIDT 1352
             ++A +   +E +  DS+Q +   + QLLR PG  Y  P     G   L+   + +    
Sbjct: 85   LVDAASSELEENDAVDSEQNINALQVQLLRCPGPSYSFPPYYLKGKGPLSPNKEPLHSKG 144

Query: 1351 ERLMDVKLHEVVNXXXXXXXXXXXXXXXADDSKVFRADLDKSFSSGLGPTSSGNFLLEEE 1172
            ++LM+ + H VV                A+DSK+    LD S       T+  +  L+E+
Sbjct: 145  DKLMNFEPHSVVALARKALLASREAALLAEDSKL----LDDSNFPNFLSTNLVDDKLKEQ 200

Query: 1171 KTVRSTRHLERRSRKRSVPELKSMVQETSSSRKADLKRKISEGFDPNDPLRLFLRSPETR 992
            +TVRSTR  ER+SRKR  P+    VQET+ S + D++RK++E  D NDPLR+FL  PET+
Sbjct: 201  RTVRSTRFTERQSRKRGAPKPTQQVQETNRSGRPDVRRKVNESIDLNDPLRMFLWGPETK 260

Query: 991  QLLTAKEESVLIAHIQDLIKLEEVKASLQSQFNREPTLLEWAEAVGLSCRVLQTQLHSGN 812
            QLLTAKEES LI  IQ  +KL+EVK  LQ QF  EPT +EWAEA G++ R L++QL SG 
Sbjct: 261  QLLTAKEESELIVKIQISMKLQEVKHQLQIQFAHEPTSVEWAEAAGITSRELKSQLLSGK 320

Query: 811  RCREKLICANFRMVVHIAKHYQGRGLSLQDLMQEGSLGLMKSVAKFKTQAGCRFATYAYW 632
              REKLI AN RMVVHIAK YQGRGL+LQDL+QEGS+GLMKSV KFK QAGCRF TYAYW
Sbjct: 321  SSREKLINANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMKSVEKFKPQAGCRFPTYAYW 380

Query: 631  WIRQSVRKAVFQHSRTIRLPDNVYALLGKITEAKRSFFQEAQRRPTNEELAARVGVTVER 452
            WIRQSVRKA+FQHSRTIRLP+NVYALL K+ +AK+   Q+  R PT E++A+  G++VER
Sbjct: 381  WIRQSVRKAIFQHSRTIRLPENVYALLSKVKDAKKECIQQGNRYPTKEDIASCAGMSVER 440

Query: 451  LDCLLSSARTPLSMQQPVWTDQATTFQEITADTRVETPEVMVTKQLMRQHVRNLLSILSP 272
            L  LLS+ RTPLSMQQ VW+DQ TTFQEITAD  +E PE+ V+KQLMR+H+R LL++LSP
Sbjct: 441  LQNLLSNVRTPLSMQQSVWSDQDTTFQEITADNAIEAPELSVSKQLMRRHIRGLLNVLSP 500

Query: 271  KERRIIRMRFGIEGFKQTSLADIGAGFGLSKERVRQLESRALYKLKQRLGDQGLEDYSSL 92
            KER+IIR+RFGI   K  SL++IG  FGLSKERVRQLE+RALYKLKQ L   GL+ YS L
Sbjct: 501  KERKIIRLRFGIGDGKPKSLSEIGTVFGLSKERVRQLETRALYKLKQNLNKHGLDAYSDL 560

Query: 91   LF 86
            LF
Sbjct: 561  LF 562


>ref|XP_004246643.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Solanum lycopersicum]
          Length = 563

 Score =  557 bits (1435), Expect = e-156
 Identities = 305/543 (56%), Positives = 383/543 (70%), Gaps = 1/543 (0%)
 Frame = -1

Query: 1711 SSSVSVLHEQAASAITSVPTTSIARHFPTSVLLQEQRDECRSFLHIIKEDRTSQATLDRR 1532
            SSSV +LHE AA  ++SVP T + R+ P S +  EQ  E R  LH++KE++TS AT+DRR
Sbjct: 25   SSSVLMLHEHAAPVLSSVPHTYLGRYVPASAIGPEQHFENRLQLHLVKEEKTSLATIDRR 84

Query: 1531 QMEAEALVHDEKNCDDSDQYLKDFECQLLRSPGLWYLSPSLQTAGNPSLALTMQSVPIDT 1352
             +EA +   +E +  DS+Q +   + QLL  PG  Y  P     G   L+   + +    
Sbjct: 85   LVEAASSELEENDAVDSEQNINALQVQLLHWPGPSYSFPPYYLKGKGPLSPNKEPLHSKG 144

Query: 1351 ERLMDVKLHEVVNXXXXXXXXXXXXXXXADDSKVFRADLDKSFSSGLGPTSSGNFLLEEE 1172
            ++LM+ + H VV                A+DSK+    LD S       T   +  L+E+
Sbjct: 145  DKLMNFEPHSVVALARKALLASKEAALLAEDSKL----LDDSHFPNFLSTHLVDDKLKEQ 200

Query: 1171 KTVRSTRHLERRSRKRSVPELKSMVQETSS-SRKADLKRKISEGFDPNDPLRLFLRSPET 995
            +TVRSTR +ER+SRKR  P+    VQET++ S + D++RK++E  D NDPLR+FL  PET
Sbjct: 201  RTVRSTRFIERQSRKRGAPKPIQEVQETNNRSGRPDVRRKVNESIDLNDPLRMFLWGPET 260

Query: 994  RQLLTAKEESVLIAHIQDLIKLEEVKASLQSQFNREPTLLEWAEAVGLSCRVLQTQLHSG 815
            +QLLTAKEES LI  IQ  +KL+EVK  LQ QF REPT LEWAEA G++ R L++QL SG
Sbjct: 261  KQLLTAKEESELIVKIQISMKLQEVKHQLQIQFAREPTSLEWAEAAGITSRELKSQLLSG 320

Query: 814  NRCREKLICANFRMVVHIAKHYQGRGLSLQDLMQEGSLGLMKSVAKFKTQAGCRFATYAY 635
               REKLI AN RMVVHIAK YQGRGL+LQDL+QEGS+GLMKSV KFK QAGCRF TYAY
Sbjct: 321  KSSREKLINANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMKSVEKFKPQAGCRFPTYAY 380

Query: 634  WWIRQSVRKAVFQHSRTIRLPDNVYALLGKITEAKRSFFQEAQRRPTNEELAARVGVTVE 455
            WWIRQSVRKA+FQHSRTIRLP+NVYALL K+ +AKR   ++  R PT E++A+  G++VE
Sbjct: 381  WWIRQSVRKAIFQHSRTIRLPENVYALLSKVKDAKRECIRQGNRHPTKEDIASCAGMSVE 440

Query: 454  RLDCLLSSARTPLSMQQPVWTDQATTFQEITADTRVETPEVMVTKQLMRQHVRNLLSILS 275
            RL  LLS+ RTPLSMQQ VW+DQ TTFQEITAD  +E PE+ V+KQLMR+H+R LL++LS
Sbjct: 441  RLQNLLSNVRTPLSMQQSVWSDQDTTFQEITADNAIEAPELSVSKQLMRRHIRGLLNVLS 500

Query: 274  PKERRIIRMRFGIEGFKQTSLADIGAGFGLSKERVRQLESRALYKLKQRLGDQGLEDYSS 95
            PKER+IIR+RFGI   K  SL++IGA FGLSKERVRQLE+RALYKLKQ L   GL+ YS 
Sbjct: 501  PKERKIIRLRFGIGDGKPKSLSEIGAVFGLSKERVRQLETRALYKLKQNLNKHGLDAYSD 560

Query: 94   LLF 86
            LLF
Sbjct: 561  LLF 563


>ref|XP_006604578.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Glycine max]
          Length = 554

 Score =  556 bits (1434), Expect = e-156
 Identities = 303/549 (55%), Positives = 382/549 (69%), Gaps = 6/549 (1%)
 Frame = -1

Query: 1717 STSSSVSVLHEQAASAITSVPTTSIARHFPTSVLLQEQRDECRSFLHIIKEDRTSQATLD 1538
            S+S SV++LHEQAA A+ S  ++S A+HFPTSVLLQEQRDE + FLH+       + TL+
Sbjct: 11   SSSPSVTMLHEQAAPAVASWSSSSAAQHFPTSVLLQEQRDEYKPFLHV----HNKETTLN 66

Query: 1537 RRQMEAEALVHDEKNCDDSDQYLKDFECQLLRSPGLWYLSPSLQTAGNPSLALTMQSVPI 1358
             RQM+  + VH++ N  ++DQ + DF  QL     L  L     T G  + ++ +Q V I
Sbjct: 67   TRQMDMTS-VHEKGNTSNADQLVHDFVQQLHLRSHLQNLLTCSPTRGIAASSI-LQPVDI 124

Query: 1357 DTERLMDVKLHEVVNXXXXXXXXXXXXXXXADDSKVFRADLDKSFSSGLGPTSSGNFLLE 1178
            D+E   D      V+                 + K+   D D    SGL  TS  +  L+
Sbjct: 125  DSEWPADGVPRNAVSLAQQALSASKQAVSTTGEMKLIEIDDDDPLPSGLASTSLTDSSLK 184

Query: 1177 EEKTVRSTRHLERRSRKRSVPELKSMVQETSSSRKADLKR------KISEGFDPNDPLRL 1016
            + K VRSTR +ER S++R   + K + +E+   RK+D++R      K+ EG+DPNDPLRL
Sbjct: 185  KNKVVRSTRIIERLSKQRKSSKSKFLDEESYLERKSDVQRRLRLEKKLKEGYDPNDPLRL 244

Query: 1015 FLRSPETRQLLTAKEESVLIAHIQDLIKLEEVKASLQSQFNREPTLLEWAEAVGLSCRVL 836
            FL  PE+RQLLT +EES LI  +QDL +LEEVK  LQ+Q  REPTL EWA+AVG SC  L
Sbjct: 245  FLSGPESRQLLTREEESQLITQLQDLSRLEEVKIRLQTQLRREPTLAEWADAVGHSCYAL 304

Query: 835  QTQLHSGNRCREKLICANFRMVVHIAKHYQGRGLSLQDLMQEGSLGLMKSVAKFKTQAGC 656
            QTQLH  NR +EKL  AN RMVVHIAKHYQGRGLSLQDL QEGS GLMKS+ KFK +AGC
Sbjct: 305  QTQLHCANRSKEKLFHANLRMVVHIAKHYQGRGLSLQDLFQEGSTGLMKSIEKFKPEAGC 364

Query: 655  RFATYAYWWIRQSVRKAVFQHSRTIRLPDNVYALLGKITEAKRSFFQEAQRRPTNEELAA 476
            RF TYAYWWIR +VRKA+F HSRTIRLP+N+Y LLGK+ EAK+S+ QE    PT EELA 
Sbjct: 365  RFGTYAYWWIRHAVRKAIFLHSRTIRLPENLYTLLGKVIEAKKSYIQEGNLHPTKEELAR 424

Query: 475  RVGVTVERLDCLLSSARTPLSMQQPVWTDQATTFQEITADTRVETPEVMVTKQLMRQHVR 296
            +VG+T+E++D LL ++R P+SMQQ VW DQ TTFQEITAD+ +E P+V V+KQLMR HV 
Sbjct: 425  KVGITIEKMDNLLFASRNPISMQQTVWADQDTTFQEITADSAIEIPDVTVSKQLMRMHVH 484

Query: 295  NLLSILSPKERRIIRMRFGIEGFKQTSLADIGAGFGLSKERVRQLESRALYKLKQRLGDQ 116
            NLL+ILSPKER IIR+RFGIE  ++ +L+DIG  FGL+KERVRQLESRAL KL+Q L  Q
Sbjct: 485  NLLNILSPKERGIIRLRFGIEDGEEKTLSDIGKVFGLTKERVRQLESRALLKLRQCLESQ 544

Query: 115  GLEDYSSLL 89
            GL+ Y+ LL
Sbjct: 545  GLDAYTDLL 553


>ref|XP_006577029.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X1 [Glycine max]
          Length = 554

 Score =  553 bits (1425), Expect = e-154
 Identities = 303/549 (55%), Positives = 378/549 (68%), Gaps = 6/549 (1%)
 Frame = -1

Query: 1717 STSSSVSVLHEQAASAITSVPTTSIARHFPTSVLLQEQRDECRSFLHIIKEDRTSQATLD 1538
            S+S SV++LHEQAA A+ S  ++S A+HFPTSVLLQEQRDE +  LH+       + TL+
Sbjct: 11   SSSPSVTMLHEQAAPAVASWSSSSAAQHFPTSVLLQEQRDEYKPLLHV----HNKETTLN 66

Query: 1537 RRQMEAEALVHDEKNCDDSDQYLKDFECQLLRSPGLWYLSPSLQTAGNPSLALTMQSVPI 1358
             RQM+  + VH++ N  + DQ + DF  QL     L  L     T G  + ++ +Q V I
Sbjct: 67   TRQMDMTS-VHEKGNMSNGDQLVHDFVQQLHLRSHLQNLLTCSPTRGIAASSI-LQPVDI 124

Query: 1357 DTERLMDVKLHEVVNXXXXXXXXXXXXXXXADDSKVFRADLDKSFSSGLGPTSSGNFLLE 1178
            D+E   D      ++                 + K+   D D     GL  TS  N  L+
Sbjct: 125  DSEWPADGLPGNAISLAQQALSASKQAVSTTGEMKLIEIDDDDPLPFGLASTSLANSSLK 184

Query: 1177 EEKTVRSTRHLERRSRKRSVPELKSMVQETSSSRKADLKR------KISEGFDPNDPLRL 1016
            + K VRSTR +ERRS++R   + K + +E+   RK+D++R      K+ EG+D NDPLRL
Sbjct: 185  KNKVVRSTRIIERRSKQRKSSKSKIIDEESYLERKSDVQRRLRLEKKLKEGYDQNDPLRL 244

Query: 1015 FLRSPETRQLLTAKEESVLIAHIQDLIKLEEVKASLQSQFNREPTLLEWAEAVGLSCRVL 836
            FL  PE+RQLLT +EES+LI  +QDL + EEVK  LQSQ  REPTL EWA+AVGLSC  L
Sbjct: 245  FLSGPESRQLLTREEESLLITQLQDLSRFEEVKIRLQSQLRREPTLAEWADAVGLSCYTL 304

Query: 835  QTQLHSGNRCREKLICANFRMVVHIAKHYQGRGLSLQDLMQEGSLGLMKSVAKFKTQAGC 656
            QTQLH  NR +EKL  AN RMVVHIAKHYQGRGLSLQDL QEGS GLMKS+ KFK +AGC
Sbjct: 305  QTQLHCANRSKEKLFHANLRMVVHIAKHYQGRGLSLQDLFQEGSTGLMKSIQKFKPEAGC 364

Query: 655  RFATYAYWWIRQSVRKAVFQHSRTIRLPDNVYALLGKITEAKRSFFQEAQRRPTNEELAA 476
            RF TYAYWWIR ++RKA+F HSRTIRLP+N+Y LLGK+ EAK+S+ QE    PT EELA 
Sbjct: 365  RFGTYAYWWIRHAIRKAIFLHSRTIRLPENLYTLLGKLIEAKKSYIQEGNLHPTKEELAR 424

Query: 475  RVGVTVERLDCLLSSARTPLSMQQPVWTDQATTFQEITADTRVETPEVMVTKQLMRQHVR 296
            RVG+TVE+LD LL ++R P+SMQQ +W DQ TTFQEITAD+ +E P V V+KQLMR+HV 
Sbjct: 425  RVGITVEKLDNLLFASRNPISMQQTLWVDQDTTFQEITADSAIEIPGVTVSKQLMRRHVH 484

Query: 295  NLLSILSPKERRIIRMRFGIEGFKQTSLADIGAGFGLSKERVRQLESRALYKLKQRLGDQ 116
            NLL+ILSPKE+ IIR+RFGIE  K+ +L+DIG  FGL+KERVRQLE RAL KLKQ L  Q
Sbjct: 485  NLLNILSPKEKGIIRLRFGIEDGKEKTLSDIGKVFGLTKERVRQLECRALSKLKQCLESQ 544

Query: 115  GLEDYSSLL 89
            GL+ Y  LL
Sbjct: 545  GLDAYIDLL 553


>gb|EYU34473.1| hypothetical protein MIMGU_mgv1a003862mg [Mimulus guttatus]
          Length = 559

 Score =  552 bits (1423), Expect = e-154
 Identities = 300/549 (54%), Positives = 391/549 (71%), Gaps = 4/549 (0%)
 Frame = -1

Query: 1723 CPSTSSSVSVLHEQAASAITSVPTTSIARHFPTSVLLQEQRDECRSFLHIIKEDRTSQAT 1544
            C S+ SSV +LHEQ   A+TS+ T S+ARH  TSVL+Q+QR+E R  L + K+D T Q T
Sbjct: 23   CSSSCSSVLLLHEQVTPALTSLSTPSLARHTTTSVLIQDQRNESRPLLSL-KDDNTFQQT 81

Query: 1543 LDRRQM---EAEALVHDEKNCDDSDQYLKDFECQLLRSPGLWYLSPSLQTAGNPSLALTM 1373
             DRRQM    A +  ++  +  D DQY  D + QLLR P LWYL  SLQ   +P    T 
Sbjct: 82   FDRRQMVTTPASSSSNEGNDKIDPDQYDNDLQLQLLRRPELWYLWSSLQKKEHPFPTTTP 141

Query: 1372 QSVPIDTERLMDVKLHEVVNXXXXXXXXXXXXXXXADDSKVFRADLDKSFSSGLGPTSSG 1193
             S+P   E +   + + V+                A+D++++  D   S  S +G     
Sbjct: 142  NSLPSTAENVTGAEANHVLALAREAFSACKEAASIAEDARLY--DNSSSTRSLVGSPV-- 197

Query: 1192 NFLLEEEKTVRSTRHLERRSRKRSV-PELKSMVQETSSSRKADLKRKISEGFDPNDPLRL 1016
                  ++ VRS R LER++++R+  P+L+   QE +  RK +  +K SEG+DPNDPLRL
Sbjct: 198  ------QRIVRSKRRLERQAKRRAPKPQLED--QEMNHRRKLEPHKKSSEGYDPNDPLRL 249

Query: 1015 FLRSPETRQLLTAKEESVLIAHIQDLIKLEEVKASLQSQFNREPTLLEWAEAVGLSCRVL 836
            FL  PET QLL+AKEE+ LIA IQ+L+KL+EV++ LQ+QF+REPTL+EWA AVG+S + L
Sbjct: 250  FLWGPETTQLLSAKEEADLIAKIQELMKLQEVRSRLQTQFSREPTLVEWAAAVGISTQAL 309

Query: 835  QTQLHSGNRCREKLICANFRMVVHIAKHYQGRGLSLQDLMQEGSLGLMKSVAKFKTQAGC 656
            Q Q++ GN  REKLI ANFR+VV+IAK YQGRGL+LQDL+Q GS+GLMKSV KFK   GC
Sbjct: 310  QFQVNCGNFSREKLIYANFRLVVYIAKQYQGRGLNLQDLLQLGSMGLMKSVEKFKPLVGC 369

Query: 655  RFATYAYWWIRQSVRKAVFQHSRTIRLPDNVYALLGKITEAKRSFFQEAQRRPTNEELAA 476
            RFATYAYWWIRQS+RK++FQHSRTIRLP+NVY LL K+ EAK++  ++   +PT E++AA
Sbjct: 370  RFATYAYWWIRQSIRKSLFQHSRTIRLPENVYTLLSKVYEAKKTCIKQGNHQPTKEDIAA 429

Query: 475  RVGVTVERLDCLLSSARTPLSMQQPVWTDQATTFQEITADTRVETPEVMVTKQLMRQHVR 296
              G++VE+LD LL ++R PLSMQ+PVW DQ TTFQEITADT VE P+V  +KQ+MRQH R
Sbjct: 430  AAGLSVEKLDRLLYTSRVPLSMQKPVWMDQDTTFQEITADTAVEAPDVGASKQIMRQHTR 489

Query: 295  NLLSILSPKERRIIRMRFGIEGFKQTSLADIGAGFGLSKERVRQLESRALYKLKQRLGDQ 116
            NLLS+L+P+ER+IIR+RFGIE  +Q SL+DIGAGFGLSKER+RQ+ESRALYKLKQ L   
Sbjct: 490  NLLSVLNPRERKIIRLRFGIEDGEQKSLSDIGAGFGLSKERIRQIESRALYKLKQCLSSH 549

Query: 115  GLEDYSSLL 89
            GL  Y+ +L
Sbjct: 550  GLSAYAEML 558