BLASTX nr result
ID: Paeonia24_contig00011029
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Paeonia24_contig00011029
(496 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_007042502.1| DNA-directed RNA polymerase family protein [... 271 9e-71
emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera] 269 3e-70
ref|XP_004138895.1| PREDICTED: DNA-directed RNA polymerase II su... 268 8e-70
ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II su... 268 8e-70
ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, puta... 266 3e-69
ref|XP_006422955.1| hypothetical protein CICLE_v10028849mg [Citr... 265 4e-69
ref|XP_007201816.1| hypothetical protein PRUPE_ppa008812mg [Prun... 263 1e-68
ref|XP_004304034.1| PREDICTED: DNA-directed RNA polymerase II su... 259 2e-67
gb|EXC17267.1| DNA-directed RNA polymerase II subunit [Morus not... 259 3e-67
ref|XP_004238992.1| PREDICTED: DNA-directed RNA polymerase II su... 258 5e-67
ref|XP_006348609.1| PREDICTED: DNA-directed RNA polymerases II, ... 257 1e-66
ref|XP_007157771.1| hypothetical protein PHAVU_002G097400g [Phas... 257 1e-66
ref|XP_002313865.2| DNA-directed RNA polymerase II 36 kDa polype... 255 4e-66
ref|XP_004505300.1| PREDICTED: DNA-directed RNA polymerase II su... 253 1e-65
ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerases II, ... 249 2e-64
ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerases II, ... 249 2e-64
ref|XP_003607895.1| DNA-directed RNA polymerase II subunit RPB3-... 249 4e-64
gb|AFK41039.1| unknown [Medicago truncatula] 244 9e-63
ref|XP_006298158.1| hypothetical protein CARUB_v10014208mg [Caps... 243 2e-62
ref|NP_179145.1| DNA-directed RNA polymerase II subunit RPB3-A [... 243 3e-62
>ref|XP_007042502.1| DNA-directed RNA polymerase family protein [Theobroma cacao]
gi|508706437|gb|EOX98333.1| DNA-directed RNA polymerase
family protein [Theobroma cacao]
Length = 318
Score = 271 bits (692), Expect = 9e-71
Identities = 132/143 (92%), Positives = 138/143 (96%)
Frame = +3
Query: 66 MEGASYQRFPKVKIREMKDDYAKFELRDTDASVANALRRVMIAEVPTIAIDLVEIEINSS 245
MEG SYQRFPKVKIRE+KDDYAKFELRDTDAS+ANALRRVMIAEVPTIAIDLVEIE+NSS
Sbjct: 1 MEGVSYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
Query: 246 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCRTDQTLDV 425
VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC TDQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDQTLDV 120
Query: 426 TSKDLITSDHTVVPCDYSDSASY 494
TSKDL +SDHTVVP D++DSA Y
Sbjct: 121 TSKDLYSSDHTVVPVDFTDSAGY 143
>emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]
Length = 318
Score = 269 bits (687), Expect = 3e-70
Identities = 129/143 (90%), Positives = 139/143 (97%)
Frame = +3
Query: 66 MEGASYQRFPKVKIREMKDDYAKFELRDTDASVANALRRVMIAEVPTIAIDLVEIEINSS 245
MEG SYQRFPK+KIRE+KDDYAKFELR+TDAS+ANALRRVMIAEVPT+AIDLVEIE+NSS
Sbjct: 1 MEGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60
Query: 246 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCRTDQTLDV 425
VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC TD+TLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDV 120
Query: 426 TSKDLITSDHTVVPCDYSDSASY 494
TSKDLI+SDHTVVP D+SDS+ Y
Sbjct: 121 TSKDLISSDHTVVPVDFSDSSGY 143
>ref|XP_004138895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
[Cucumis sativus]
Length = 320
Score = 268 bits (684), Expect = 8e-70
Identities = 130/142 (91%), Positives = 139/142 (97%)
Frame = +3
Query: 66 MEGASYQRFPKVKIREMKDDYAKFELRDTDASVANALRRVMIAEVPTIAIDLVEIEINSS 245
MEG+SYQRFPKVKIRE++DDYAKFELRDTDAS+ANALRRVMIAEVPTIAIDLVEIE+NSS
Sbjct: 1 MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
Query: 246 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCRTDQTLDV 425
VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC +DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
Query: 426 TSKDLITSDHTVVPCDYSDSAS 491
TSKDL +SDHTVVP D+SDSA+
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAA 142
>ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A [Vitis
vinifera]
Length = 318
Score = 268 bits (684), Expect = 8e-70
Identities = 128/143 (89%), Positives = 139/143 (97%)
Frame = +3
Query: 66 MEGASYQRFPKVKIREMKDDYAKFELRDTDASVANALRRVMIAEVPTIAIDLVEIEINSS 245
MEG SYQRFPK+KIRE+KDDYAKFELR+TDAS+ANALRRVMIAEVPT+AIDLVEIE+NSS
Sbjct: 1 MEGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60
Query: 246 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCRTDQTLDV 425
VLNDEFIAHRLGLIPLTSERAM+MRFSRDCDACDGDGQCEFCSVEFHLRAKC TD+TLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDV 120
Query: 426 TSKDLITSDHTVVPCDYSDSASY 494
TSKDLI+SDHTVVP D+SDS+ Y
Sbjct: 121 TSKDLISSDHTVVPVDFSDSSGY 143
>ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
gi|223542081|gb|EEF43625.1| DNA-directed RNA polymerase
II subunit, putative [Ricinus communis]
Length = 318
Score = 266 bits (679), Expect = 3e-69
Identities = 127/143 (88%), Positives = 138/143 (96%)
Frame = +3
Query: 66 MEGASYQRFPKVKIREMKDDYAKFELRDTDASVANALRRVMIAEVPTIAIDLVEIEINSS 245
MEGASYQRFP++KIRE+KDDY KFELRDTDAS+ANALRRVMIAEVPT+AIDLVEIE+NSS
Sbjct: 1 MEGASYQRFPRIKIRELKDDYCKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60
Query: 246 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCRTDQTLDV 425
VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQC++CSVEFHLRAKC TDQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCDYCSVEFHLRAKCITDQTLDV 120
Query: 426 TSKDLITSDHTVVPCDYSDSASY 494
TSKDL +SDHTVVP D+SDS+ Y
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSSGY 143
>ref|XP_006422955.1| hypothetical protein CICLE_v10028849mg [Citrus clementina]
gi|568867393|ref|XP_006487022.1| PREDICTED: DNA-directed
RNA polymerases II, IV and V subunit 3-like [Citrus
sinensis] gi|557524889|gb|ESR36195.1| hypothetical
protein CICLE_v10028849mg [Citrus clementina]
Length = 319
Score = 265 bits (678), Expect = 4e-69
Identities = 129/143 (90%), Positives = 137/143 (95%)
Frame = +3
Query: 66 MEGASYQRFPKVKIREMKDDYAKFELRDTDASVANALRRVMIAEVPTIAIDLVEIEINSS 245
M+GASYQRFPKVKIRE+KDDYAKFELRDTDAS+ANALRRVMIAEVPTIAIDLVEIE+NSS
Sbjct: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
Query: 246 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCRTDQTLDV 425
VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC +DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
Query: 426 TSKDLITSDHTVVPCDYSDSASY 494
TSKDL +SDH+VVP D+ D A Y
Sbjct: 121 TSKDLYSSDHSVVPVDFVDPAGY 143
>ref|XP_007201816.1| hypothetical protein PRUPE_ppa008812mg [Prunus persica]
gi|462397216|gb|EMJ03015.1| hypothetical protein
PRUPE_ppa008812mg [Prunus persica]
Length = 318
Score = 263 bits (673), Expect = 1e-68
Identities = 128/141 (90%), Positives = 136/141 (96%)
Frame = +3
Query: 66 MEGASYQRFPKVKIREMKDDYAKFELRDTDASVANALRRVMIAEVPTIAIDLVEIEINSS 245
MEG SYQR P+VKIREM+DDY KFELRDTDASVANALRRVMIAEVPT+AIDLVEIEINSS
Sbjct: 1 MEGKSYQRLPRVKIREMRDDYMKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSS 60
Query: 246 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCRTDQTLDV 425
VLNDEFIAHRLGLIPLTS+RAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC +DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
Query: 426 TSKDLITSDHTVVPCDYSDSA 488
TSKDL++SDHTVVP D+SDSA
Sbjct: 121 TSKDLLSSDHTVVPVDFSDSA 141
>ref|XP_004304034.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
[Fragaria vesca subsp. vesca]
Length = 318
Score = 259 bits (663), Expect = 2e-67
Identities = 124/143 (86%), Positives = 137/143 (95%)
Frame = +3
Query: 66 MEGASYQRFPKVKIREMKDDYAKFELRDTDASVANALRRVMIAEVPTIAIDLVEIEINSS 245
MEG SYQRFP+VKIREM+ DY KFELRDTDASVANALRRVMIAEVPT+AIDLVEIEINSS
Sbjct: 1 MEGKSYQRFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSS 60
Query: 246 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCRTDQTLDV 425
VLNDEFIAHRLGLIPLTS+RAMSMRFSRDCDACDGDGQCE+CSVEFHLRA+C +DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 120
Query: 426 TSKDLITSDHTVVPCDYSDSASY 494
TSK+L++SDHTVVP D+SD++ Y
Sbjct: 121 TSKELLSSDHTVVPVDFSDASGY 143
>gb|EXC17267.1| DNA-directed RNA polymerase II subunit [Morus notabilis]
Length = 588
Score = 259 bits (661), Expect = 3e-67
Identities = 128/141 (90%), Positives = 134/141 (95%)
Frame = +3
Query: 66 MEGASYQRFPKVKIREMKDDYAKFELRDTDASVANALRRVMIAEVPTIAIDLVEIEINSS 245
MEG SYQRFPKVKIREMKDDY KFELRDTDAS+ANALRRVMIAEVPTIAIDLVEIE+NSS
Sbjct: 1 MEGKSYQRFPKVKIREMKDDYLKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
Query: 246 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCRTDQTLDV 425
VLNDEFIAHRLGLIPLTS+RAMSMRFSRDCDACDGDGQCEFCSVEF LRAKC +DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEFCSVEFLLRAKCISDQTLDV 120
Query: 426 TSKDLITSDHTVVPCDYSDSA 488
TSKDL T+DHTVVP D+SD A
Sbjct: 121 TSKDLYTADHTVVPIDFSDPA 141
>ref|XP_004238992.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
[Solanum lycopersicum]
Length = 319
Score = 258 bits (660), Expect = 5e-67
Identities = 121/142 (85%), Positives = 137/142 (96%)
Frame = +3
Query: 66 MEGASYQRFPKVKIREMKDDYAKFELRDTDASVANALRRVMIAEVPTIAIDLVEIEINSS 245
MEG SYQRFPK+K+RE+KDD+ KFELRDTDAS+ANALRR+MIAEVPTIAIDLVEIE+NSS
Sbjct: 1 MEGVSYQRFPKIKVREVKDDFMKFELRDTDASIANALRRIMIAEVPTIAIDLVEIEVNSS 60
Query: 246 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCRTDQTLDV 425
VLNDEFI+HRLGL+PLTSERAMSMRFSRDCDACDGDGQCE+CSVEF+LR KC +DQTLDV
Sbjct: 61 VLNDEFISHRLGLVPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFYLRVKCLSDQTLDV 120
Query: 426 TSKDLITSDHTVVPCDYSDSAS 491
TSKDL++SDHTVVP DYSD++S
Sbjct: 121 TSKDLLSSDHTVVPVDYSDASS 142
>ref|XP_006348609.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like
[Solanum tuberosum]
Length = 319
Score = 257 bits (657), Expect = 1e-66
Identities = 121/142 (85%), Positives = 137/142 (96%)
Frame = +3
Query: 66 MEGASYQRFPKVKIREMKDDYAKFELRDTDASVANALRRVMIAEVPTIAIDLVEIEINSS 245
MEG SYQRFPK+KIRE+KDD+ KFELR+TDAS+ANALRR+MIAEVPTIAIDLVEIE+NSS
Sbjct: 1 MEGVSYQRFPKIKIREVKDDFMKFELRETDASIANALRRIMIAEVPTIAIDLVEIEVNSS 60
Query: 246 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCRTDQTLDV 425
VLNDEFI+HRLGL+PLTSERAMSMRFSRDCDACDGDGQCE+CSVEF+LR KC +DQTLDV
Sbjct: 61 VLNDEFISHRLGLVPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFYLRVKCLSDQTLDV 120
Query: 426 TSKDLITSDHTVVPCDYSDSAS 491
TSKDL++SDHTVVP DYSD++S
Sbjct: 121 TSKDLLSSDHTVVPVDYSDTSS 142
>ref|XP_007157771.1| hypothetical protein PHAVU_002G097400g [Phaseolus vulgaris]
gi|561031186|gb|ESW29765.1| hypothetical protein
PHAVU_002G097400g [Phaseolus vulgaris]
Length = 318
Score = 257 bits (656), Expect = 1e-66
Identities = 126/142 (88%), Positives = 134/142 (94%)
Frame = +3
Query: 66 MEGASYQRFPKVKIREMKDDYAKFELRDTDASVANALRRVMIAEVPTIAIDLVEIEINSS 245
MEGASY R P+VKIRE+KDDYAKFELRDTDAS+ANALRRVMIAEVPTIAIDLVEIE+NSS
Sbjct: 1 MEGASYARMPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEVNSS 60
Query: 246 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCRTDQTLDV 425
VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLR KC TDQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDV 120
Query: 426 TSKDLITSDHTVVPCDYSDSAS 491
+SKDL +SD +VVP D+SD AS
Sbjct: 121 SSKDLYSSDPSVVPVDFSDPAS 142
>ref|XP_002313865.2| DNA-directed RNA polymerase II 36 kDa polypeptide B family protein
[Populus trichocarpa] gi|550331423|gb|EEE87820.2|
DNA-directed RNA polymerase II 36 kDa polypeptide B
family protein [Populus trichocarpa]
Length = 323
Score = 255 bits (652), Expect = 4e-66
Identities = 123/139 (88%), Positives = 131/139 (94%)
Frame = +3
Query: 66 MEGASYQRFPKVKIREMKDDYAKFELRDTDASVANALRRVMIAEVPTIAIDLVEIEINSS 245
ME SYQRFPK+KIREMKDDY KFELR+TDAS+ANALRRVMIAEVPTIAIDLVEIE+NSS
Sbjct: 1 MESVSYQRFPKIKIREMKDDYLKFELRETDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
Query: 246 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCRTDQTLDV 425
VLNDEFIAHRLGLIPLTSERAM MRFSRDCDACDGDGQCE+CSVEFHLRAKC TDQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDV 120
Query: 426 TSKDLITSDHTVVPCDYSD 482
TSKDL +SDH V+P D+SD
Sbjct: 121 TSKDLYSSDHAVIPVDFSD 139
>ref|XP_004505300.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
[Cicer arietinum]
Length = 319
Score = 253 bits (647), Expect = 1e-65
Identities = 124/142 (87%), Positives = 132/142 (92%)
Frame = +3
Query: 66 MEGASYQRFPKVKIREMKDDYAKFELRDTDASVANALRRVMIAEVPTIAIDLVEIEINSS 245
MEGASY R P+VKIRE+KDDY KFELRDTDASVANALRRVMI+EVPTIAIDLVEIE+NSS
Sbjct: 1 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTIAIDLVEIEVNSS 60
Query: 246 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCRTDQTLDV 425
VLNDEFIAHRLGLIPLTSERAM+MRFSRDCDACDGDGQCE+CSVEFHLR KC TDQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCITDQTLDV 120
Query: 426 TSKDLITSDHTVVPCDYSDSAS 491
TSKDL +SDHTVVP D+S S
Sbjct: 121 TSKDLYSSDHTVVPVDFSADPS 142
>ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like
[Glycine max]
Length = 320
Score = 249 bits (637), Expect = 2e-64
Identities = 121/140 (86%), Positives = 130/140 (92%)
Frame = +3
Query: 72 GASYQRFPKVKIREMKDDYAKFELRDTDASVANALRRVMIAEVPTIAIDLVEIEINSSVL 251
G SY R P+VKIRE+KDDYAKFELRDTDAS+ANALRRVMIAEVPT+AIDLVEIE+NSSVL
Sbjct: 4 GVSYARMPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSSVL 63
Query: 252 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCRTDQTLDVTS 431
NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLR KC TDQTLDVTS
Sbjct: 64 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDVTS 123
Query: 432 KDLITSDHTVVPCDYSDSAS 491
KDL +SD TV P D+SD ++
Sbjct: 124 KDLYSSDPTVSPVDFSDPSA 143
>ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3
[Glycine max]
Length = 319
Score = 249 bits (637), Expect = 2e-64
Identities = 121/140 (86%), Positives = 130/140 (92%)
Frame = +3
Query: 72 GASYQRFPKVKIREMKDDYAKFELRDTDASVANALRRVMIAEVPTIAIDLVEIEINSSVL 251
G SY R P+VKIRE+KDDYAKFELRDTDAS+ANALRRVMIAEVPT+AIDLVEIE+NSSVL
Sbjct: 4 GVSYARMPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSSVL 63
Query: 252 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCRTDQTLDVTS 431
NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLR KC TDQTLDVTS
Sbjct: 64 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDVTS 123
Query: 432 KDLITSDHTVVPCDYSDSAS 491
KDL +SD TV P D+SD ++
Sbjct: 124 KDLYSSDPTVSPVDFSDPSA 143
>ref|XP_003607895.1| DNA-directed RNA polymerase II subunit RPB3-A [Medicago truncatula]
gi|85719360|gb|ABC75365.1| RNA polymerase, dimerisation
[Medicago truncatula] gi|355508950|gb|AES90092.1|
DNA-directed RNA polymerase II subunit RPB3-A [Medicago
truncatula]
Length = 318
Score = 249 bits (635), Expect = 4e-64
Identities = 120/136 (88%), Positives = 129/136 (94%)
Frame = +3
Query: 66 MEGASYQRFPKVKIREMKDDYAKFELRDTDASVANALRRVMIAEVPTIAIDLVEIEINSS 245
MEGASY R P+VKIRE+KDDY KFELRDTDASVANALRRVMI+EVPT+AIDLVEIE+NSS
Sbjct: 1 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 60
Query: 246 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCRTDQTLDV 425
VLNDEFIAHRLGLIPLTSERAM+MRFSRDCDACDGDGQCE+CSVEFHLR KC TDQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCITDQTLDV 120
Query: 426 TSKDLITSDHTVVPCD 473
+SKDLI+SDHTV P D
Sbjct: 121 SSKDLISSDHTVTPVD 136
>gb|AFK41039.1| unknown [Medicago truncatula]
Length = 318
Score = 244 bits (623), Expect = 9e-63
Identities = 119/136 (87%), Positives = 128/136 (94%)
Frame = +3
Query: 66 MEGASYQRFPKVKIREMKDDYAKFELRDTDASVANALRRVMIAEVPTIAIDLVEIEINSS 245
MEGASY R P+VKIRE+KDDY KFELRDTDASVANALRRVMI+EVPT+AIDLVEIE+NSS
Sbjct: 1 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 60
Query: 246 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCRTDQTLDV 425
VLNDEFIAHRLGLIPLTSERAM+MRFSRDCDACDGDGQCE+CSVEFHLR K TDQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKRITDQTLDV 120
Query: 426 TSKDLITSDHTVVPCD 473
+SKDLI+SDHTV P D
Sbjct: 121 SSKDLISSDHTVTPVD 136
>ref|XP_006298158.1| hypothetical protein CARUB_v10014208mg [Capsella rubella]
gi|482566867|gb|EOA31056.1| hypothetical protein
CARUB_v10014208mg [Capsella rubella]
Length = 319
Score = 243 bits (620), Expect = 2e-62
Identities = 117/142 (82%), Positives = 132/142 (92%)
Frame = +3
Query: 66 MEGASYQRFPKVKIREMKDDYAKFELRDTDASVANALRRVMIAEVPTIAIDLVEIEINSS 245
M+GA+YQRFPKVKIRE+KDDYAKFELR+TD S+ANALRRVMI+EVPT+AIDLVEIE+NSS
Sbjct: 1 MDGATYQRFPKVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60
Query: 246 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCRTDQTLDV 425
VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEF L +KC TDQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120
Query: 426 TSKDLITSDHTVVPCDYSDSAS 491
TS+DL ++D TV P D++ +S
Sbjct: 121 TSRDLYSADPTVTPVDFTIDSS 142
>ref|NP_179145.1| DNA-directed RNA polymerase II subunit RPB3-A [Arabidopsis
thaliana] gi|11134646|sp|Q39211.1|NRPB3_ARATH RecName:
Full=DNA-directed RNA polymerases II, IV and V subunit
3; AltName: Full=DNA-directed RNA polymerase II 36 kDa
polypeptide A; AltName: Full=DNA-directed RNA polymerase
II subunit RPB3-A; Short=RNA polymerase II subunit 3-A;
Short=RNA polymerase II subunit B3-A
gi|514318|gb|AAB03741.1| RNA polymerase II third largest
subunit [Arabidopsis thaliana] gi|4544370|gb|AAD22281.1|
DNA-directed RNA polymerase II, third largest subunit
[Arabidopsis thaliana] gi|17381018|gb|AAL36321.1|
putative DNA-directed RNA polymerase II third largest
subunit [Arabidopsis thaliana]
gi|20465883|gb|AAM20046.1| putative DNA-directed RNA
polymerase II [Arabidopsis thaliana]
gi|330251306|gb|AEC06400.1| DNA-directed RNA polymerase
II subunit RPB3-A [Arabidopsis thaliana]
Length = 319
Score = 243 bits (619), Expect = 3e-62
Identities = 116/142 (81%), Positives = 132/142 (92%)
Frame = +3
Query: 66 MEGASYQRFPKVKIREMKDDYAKFELRDTDASVANALRRVMIAEVPTIAIDLVEIEINSS 245
M+GA+YQRFPK+KIRE+KDDYAKFELR+TD S+ANALRRVMI+EVPT+AIDLVEIE+NSS
Sbjct: 1 MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60
Query: 246 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCRTDQTLDV 425
VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEF L +KC TDQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120
Query: 426 TSKDLITSDHTVVPCDYSDSAS 491
TS+DL ++D TV P D++ +S
Sbjct: 121 TSRDLYSADPTVTPVDFTIDSS 142