BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia24_contig00004882
         (690 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAY85202.1| RNA polymerase II second largest subunit [Dianthu...   221   5e-78
gb|AAZ08459.1| RNA polymerase II second largest subunit [Astilbe...   219   2e-77
gb|EYU43393.1| hypothetical protein MIMGU_mgv1a000385mg [Mimulus...   219   2e-77
gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhodode...   218   7e-77
gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrh...   217   9e-77
ref|XP_006347043.1| PREDICTED: DNA-directed RNA polymerase II su...   217   1e-76
ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 ...   217   1e-76
gb|AAY85217.1| RNA polymerase II second largest subunit [Muehlen...   217   1e-76
ref|XP_007025631.1| DNA-directed RNA polymerase family protein i...   216   2e-76
gb|AAY89346.1| RNA polymerase II second largest subunit [Nicotia...   216   2e-76
ref|XP_007025632.1| DNA-directed RNA polymerase family protein i...   216   2e-76
ref|XP_006487405.1| PREDICTED: DNA-directed RNA polymerase II su...   214   5e-76
ref|XP_006423594.1| hypothetical protein CICLE_v10027701mg [Citr...   214   5e-76
ref|XP_007148168.1| hypothetical protein PHAVU_006G185800g [Phas...   214   7e-76
ref|XP_007214559.1| hypothetical protein PRUPE_ppa000425mg [Prun...   214   7e-76
ref|XP_004134705.1| PREDICTED: DNA-directed RNA polymerase II su...   214   9e-76
ref|XP_004294022.1| PREDICTED: DNA-directed RNA polymerase II su...   214   9e-76
gb|EXC18122.1| DNA-directed RNA polymerase II subunit [Morus not...   213   1e-75
gb|AAS86834.1| RNA polymerase II second largest subunit, partial...   217   2e-75
gb|AAZ08467.1| RNA polymerase II second largest subunit [Linanth...   213   3e-75

>gb|AAY85202.1| RNA polymerase II second largest subunit [Dianthus caryophyllus]
          Length = 674

 Score =  221 bits (564), Expect(3) = 5e-78
 Identities = 130/220 (59%), Positives = 142/220 (64%), Gaps = 56/220 (25%)
 Frame = +3

Query: 153 AYPILEFLEEWVT*NFE-----LYPNLRRFLLMVAGWVAI--------VTLI*LRRRLEV 293
           AYPILEFLEEW T NFE     + P   + + +  GWV I         TL  LRRR++V
Sbjct: 160 AYPILEFLEEWSTENFEEISPAVIPQATK-IFVNGGWVGIHRDPDLLVKTLRELRRRVDV 218

Query: 294 NTEVGVV*DIHLKEL*IYTDYGRCSRPLFIMEKQRLLIKK-DFQALQQRETPDEGGWHDL 470
           NTEVGVV DI LKEL IYTDYGRCSRPLFI+EKQRLLIKK D +ALQQRETP++GGWHDL
Sbjct: 219 NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRETPEDGGWHDL 278

Query: 471 VAKGFVEYVDTEEEETNMISMTINSL---------------------------------- 548
           VAKGF+EY+DTEEEET MISMTIN L                                  
Sbjct: 279 VAKGFIEYIDTEEEETTMISMTINDLVSARLNPEESYSGTYTHCEIHPSLILGVCASIIP 338

Query: 549 --------RNTYQSAMGKQAMGIYVTNYQFEMDILAYVLY 644
                   RNTYQSAMGKQAMGIYVTNYQF MD LAYVLY
Sbjct: 339 FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLY 378



 Score = 84.7 bits (208), Expect(3) = 5e-78
 Identities = 40/45 (88%), Positives = 41/45 (91%)
 Frame = +1

Query: 16  EGKLAKPLLLHNSQWGMMCLAGTPEGQACGLVKNVALMVYITVGS 150
           EGKLAKP  LHNSQWGMMC A TPEGQACGLVKN+ALMVYITVGS
Sbjct: 114 EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS 158



 Score = 33.5 bits (75), Expect(3) = 5e-78
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +1

Query: 643 TQATEHLHFRQLPAGI 690
           T+A EHLHFRQLPAGI
Sbjct: 387 TRAMEHLHFRQLPAGI 402


>gb|AAZ08459.1| RNA polymerase II second largest subunit [Astilbe sp. Yoshikawa s.n.]
          Length = 951

 Score =  219 bits (559), Expect(3) = 2e-77
 Identities = 133/221 (60%), Positives = 142/221 (64%), Gaps = 57/221 (25%)
 Frame = +3

Query: 153  AYPILEFLEEWVT*NFE-----LYPNLRRFLLMVAG-WVAI--------VTLI*LRRRLE 290
            AYPILEFLEEW T NFE     + P   +  + V G WV I         TL  LRRR++
Sbjct: 437  AYPILEFLEEWGTENFEEISPAVIPEATK--IFVNGCWVGIHRDPDMLVKTLRRLRRRVD 494

Query: 291  VNTEVGVV*DIHLKEL*IYTDYGRCSRPLFIMEKQRLLIKK-DFQALQQRETPDEGGWHD 467
            VNTEVGVV DI LKEL IYTDYGRCSRPLFI+EKQRLLIKK D QALQQRETP++GGWHD
Sbjct: 495  VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRETPEDGGWHD 554

Query: 468  LVAKGFVEYVDTEEEETNMISMTINSL--------------------------------- 548
            LVAKGF+EYVDTEEEET MISMTIN L                                 
Sbjct: 555  LVAKGFIEYVDTEEEETTMISMTINDLVSARLNPEEAYSEYYTHCEIHPSLILGVCASII 614

Query: 549  ---------RNTYQSAMGKQAMGIYVTNYQFEMDILAYVLY 644
                     RNTYQSAMGKQAMGIYVTNYQF MD LAYVLY
Sbjct: 615  PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLY 655



 Score = 84.7 bits (208), Expect(3) = 2e-77
 Identities = 40/45 (88%), Positives = 41/45 (91%)
 Frame = +1

Query: 16  EGKLAKPLLLHNSQWGMMCLAGTPEGQACGLVKNVALMVYITVGS 150
           EGKLAKP  LHNSQWGMMC A TPEGQACGLVKN+ALMVYITVGS
Sbjct: 391 EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS 435



 Score = 33.5 bits (75), Expect(3) = 2e-77
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +1

Query: 643 TQATEHLHFRQLPAGI 690
           T+A EHLHFRQLPAGI
Sbjct: 664 TRAMEHLHFRQLPAGI 679


>gb|EYU43393.1| hypothetical protein MIMGU_mgv1a000385mg [Mimulus guttatus]
          Length = 1197

 Score =  219 bits (558), Expect(3) = 2e-77
 Identities = 132/221 (59%), Positives = 142/221 (64%), Gaps = 57/221 (25%)
 Frame = +3

Query: 153  AYPILEFLEEWVT*NFE-----LYPNLRRFLLMVAG-WVAI--------VTLI*LRRRLE 290
            AYPILEFLEEW T NFE     + P   +  + V G WV I         TL  LRRR++
Sbjct: 546  AYPILEFLEEWGTENFEEISPAVIPQATK--IFVNGCWVGIHRNPDMLVSTLRRLRRRVD 603

Query: 291  VNTEVGVV*DIHLKEL*IYTDYGRCSRPLFIMEKQRLLIKK-DFQALQQRETPDEGGWHD 467
            VNTEVGVV DI LKEL IYTDYGRCSRPLFI+EKQRLLIKK D QALQQRE+PD+GGWHD
Sbjct: 604  VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESPDDGGWHD 663

Query: 468  LVAKGFVEYVDTEEEETNMISMTINSL--------------------------------- 548
            LVAKGF+EY+DTEEEET MISMTIN L                                 
Sbjct: 664  LVAKGFIEYIDTEEEETTMISMTINDLVSARINPGEAYSDTYTHCEIHPSLILGVCASII 723

Query: 549  ---------RNTYQSAMGKQAMGIYVTNYQFEMDILAYVLY 644
                     RNTYQSAMGKQAMGIYVTNYQF MD LAYVLY
Sbjct: 724  PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLY 764



 Score = 84.7 bits (208), Expect(3) = 2e-77
 Identities = 40/45 (88%), Positives = 41/45 (91%)
 Frame = +1

Query: 16  EGKLAKPLLLHNSQWGMMCLAGTPEGQACGLVKNVALMVYITVGS 150
           EGKLAKP  LHNSQWGMMC A TPEGQACGLVKN+ALMVYITVGS
Sbjct: 500 EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS 544



 Score = 33.5 bits (75), Expect(3) = 2e-77
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +1

Query: 643 TQATEHLHFRQLPAGI 690
           T+A EHLHFRQLPAGI
Sbjct: 773 TRAMEHLHFRQLPAGI 788


>gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
          Length = 1191

 Score =  218 bits (554), Expect(3) = 7e-77
 Identities = 131/221 (59%), Positives = 142/221 (64%), Gaps = 57/221 (25%)
 Frame = +3

Query: 153  AYPILEFLEEWVT*NFE-----LYPNLRRFLLMVAG-WVAIV--------TLI*LRRRLE 290
            AYPILEFLEEW T NFE     + P   +  + V G WV I         TL  LRRR++
Sbjct: 541  AYPILEFLEEWGTENFEEISPAVIPQATK--IFVNGCWVGIHRDPDMLVRTLRRLRRRVD 598

Query: 291  VNTEVGVV*DIHLKEL*IYTDYGRCSRPLFIMEKQRLLIK-KDFQALQQRETPDEGGWHD 467
            VNTEVGVV DI LKEL IYTDYGRCSRPLFI+EKQRLLIK KD QALQQRETP++GGWHD
Sbjct: 599  VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKRKDIQALQQRETPEDGGWHD 658

Query: 468  LVAKGFVEYVDTEEEETNMISMTINSL--------------------------------- 548
            LVAKGF+EY+DTEEEET MISMTIN L                                 
Sbjct: 659  LVAKGFIEYIDTEEEETTMISMTINDLVSARLNPEEAYSETYTHCEIHPSLILGVCASII 718

Query: 549  ---------RNTYQSAMGKQAMGIYVTNYQFEMDILAYVLY 644
                     RNTYQSAMGKQAMGIYVTNYQF MD +AYVLY
Sbjct: 719  PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTVAYVLY 759



 Score = 84.7 bits (208), Expect(3) = 7e-77
 Identities = 40/45 (88%), Positives = 41/45 (91%)
 Frame = +1

Query: 16  EGKLAKPLLLHNSQWGMMCLAGTPEGQACGLVKNVALMVYITVGS 150
           EGKLAKP  LHNSQWGMMC A TPEGQACGLVKN+ALMVYITVGS
Sbjct: 495 EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS 539



 Score = 33.5 bits (75), Expect(3) = 7e-77
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +1

Query: 643 TQATEHLHFRQLPAGI 690
           T+A EHLHFRQLPAGI
Sbjct: 768 TRAMEHLHFRQLPAGI 783


>gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrhinum majus]
          Length = 1200

 Score =  217 bits (553), Expect(3) = 9e-77
 Identities = 131/221 (59%), Positives = 142/221 (64%), Gaps = 57/221 (25%)
 Frame = +3

Query: 153  AYPILEFLEEWVT*NFE-----LYPNLRRFLLMVAG-WVAI--------VTLI*LRRRLE 290
            AYPILEFLEEW T NFE     + P   +  + V G WV I         TL  LRRR++
Sbjct: 550  AYPILEFLEEWGTENFEEISPAVIPQATK--IFVNGLWVGIHRNPDMLVSTLRRLRRRVD 607

Query: 291  VNTEVGVV*DIHLKEL*IYTDYGRCSRPLFIMEKQRLLIKK-DFQALQQRETPDEGGWHD 467
            VNTEVGVV DI LKEL IYTDYGRCSRPLFI+EKQRLLIKK D QALQQRE+PD+GGWH+
Sbjct: 608  VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDVQALQQRESPDDGGWHE 667

Query: 468  LVAKGFVEYVDTEEEETNMISMTINSL--------------------------------- 548
            LVAKGF+EY+DTEEEET MISMTIN L                                 
Sbjct: 668  LVAKGFIEYIDTEEEETTMISMTINDLLSAKVNPTEAYSDTYTHCEIHPSLILGVCASII 727

Query: 549  ---------RNTYQSAMGKQAMGIYVTNYQFEMDILAYVLY 644
                     RNTYQSAMGKQAMGIYVTNYQF MD LAYVLY
Sbjct: 728  PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLY 768



 Score = 84.7 bits (208), Expect(3) = 9e-77
 Identities = 40/45 (88%), Positives = 41/45 (91%)
 Frame = +1

Query: 16  EGKLAKPLLLHNSQWGMMCLAGTPEGQACGLVKNVALMVYITVGS 150
           EGKLAKP  LHNSQWGMMC A TPEGQACGLVKN+ALMVYITVGS
Sbjct: 504 EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS 548



 Score = 33.5 bits (75), Expect(3) = 9e-77
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +1

Query: 643 TQATEHLHFRQLPAGI 690
           T+A EHLHFRQLPAGI
Sbjct: 777 TRAMEHLHFRQLPAGI 792


>ref|XP_006347043.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Solanum
            tuberosum]
          Length = 1191

 Score =  217 bits (552), Expect(3) = 1e-76
 Identities = 128/220 (58%), Positives = 140/220 (63%), Gaps = 56/220 (25%)
 Frame = +3

Query: 153  AYPILEFLEEWVT*NFE-----LYPNLRRFLLMVAGWVAIV--------TLI*LRRRLEV 293
            AYPILEFLEEW T NFE     + P   + + +   WV I         TL  LRRR++V
Sbjct: 541  AYPILEFLEEWGTENFEEISPAVIPQATK-IFVNGTWVGIHRDPDMLVRTLRRLRRRVDV 599

Query: 294  NTEVGVV*DIHLKEL*IYTDYGRCSRPLFIMEKQRLLIKK-DFQALQQRETPDEGGWHDL 470
            NTEVGVV DI LKEL IYTDYGRCSRPLFI+EKQRL+IKK D Q LQQRE+PDEGGWHDL
Sbjct: 600  NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLMIKKKDIQTLQQRESPDEGGWHDL 659

Query: 471  VAKGFVEYVDTEEEETNMISMTINSL---------------------------------- 548
            VAKG++EY+DTEEEET MISMTIN L                                  
Sbjct: 660  VAKGYIEYIDTEEEETTMISMTINDLVQARLNPGDAYSDTYTHCEIHPSLILGVCASIIP 719

Query: 549  --------RNTYQSAMGKQAMGIYVTNYQFEMDILAYVLY 644
                    RNTYQSAMGKQAMGIYVTNYQF MD LAYVLY
Sbjct: 720  FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLY 759



 Score = 84.7 bits (208), Expect(3) = 1e-76
 Identities = 40/45 (88%), Positives = 41/45 (91%)
 Frame = +1

Query: 16  EGKLAKPLLLHNSQWGMMCLAGTPEGQACGLVKNVALMVYITVGS 150
           EGKLAKP  LHNSQWGMMC A TPEGQACGLVKN+ALMVYITVGS
Sbjct: 495 EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS 539



 Score = 33.5 bits (75), Expect(3) = 1e-76
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +1

Query: 643 TQATEHLHFRQLPAGI 690
           T+A EHLHFRQLPAGI
Sbjct: 768 TRAMEHLHFRQLPAGI 783


>ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 [Solanum lycopersicum]
            gi|11134656|sp|Q42877.1|RPB2_SOLLC RecName:
            Full=DNA-directed RNA polymerase II subunit RPB2;
            Short=RNA polymerase II subunit 2; Short=RNA polymerase
            II subunit B2; AltName: Full=DNA-directed RNA polymerase
            II 135 kDa polypeptide gi|1049068|gb|AAC49273.1| RNA
            polymerase II subunit 2 [Solanum lycopersicum]
          Length = 1191

 Score =  217 bits (552), Expect(3) = 1e-76
 Identities = 128/220 (58%), Positives = 140/220 (63%), Gaps = 56/220 (25%)
 Frame = +3

Query: 153  AYPILEFLEEWVT*NFE-----LYPNLRRFLLMVAGWVAIV--------TLI*LRRRLEV 293
            AYPILEFLEEW T NFE     + P   + + +   WV I         TL  LRRR++V
Sbjct: 541  AYPILEFLEEWGTENFEEISPAVIPQATK-IFVNGTWVGIHRDPDMLVRTLRRLRRRVDV 599

Query: 294  NTEVGVV*DIHLKEL*IYTDYGRCSRPLFIMEKQRLLIKK-DFQALQQRETPDEGGWHDL 470
            NTEVGVV DI LKEL IYTDYGRCSRPLFI+EKQRL+IKK D Q LQQRE+PDEGGWHDL
Sbjct: 600  NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLMIKKKDIQTLQQRESPDEGGWHDL 659

Query: 471  VAKGFVEYVDTEEEETNMISMTINSL---------------------------------- 548
            VAKG++EY+DTEEEET MISMTIN L                                  
Sbjct: 660  VAKGYIEYIDTEEEETTMISMTINDLVQARLNPGDAYSDTYTHCEIHPSLILGVCASIIP 719

Query: 549  --------RNTYQSAMGKQAMGIYVTNYQFEMDILAYVLY 644
                    RNTYQSAMGKQAMGIYVTNYQF MD LAYVLY
Sbjct: 720  FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLY 759



 Score = 84.7 bits (208), Expect(3) = 1e-76
 Identities = 40/45 (88%), Positives = 41/45 (91%)
 Frame = +1

Query: 16  EGKLAKPLLLHNSQWGMMCLAGTPEGQACGLVKNVALMVYITVGS 150
           EGKLAKP  LHNSQWGMMC A TPEGQACGLVKN+ALMVYITVGS
Sbjct: 495 EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS 539



 Score = 33.5 bits (75), Expect(3) = 1e-76
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +1

Query: 643 TQATEHLHFRQLPAGI 690
           T+A EHLHFRQLPAGI
Sbjct: 768 TRAMEHLHFRQLPAGI 783


>gb|AAY85217.1| RNA polymerase II second largest subunit [Muehlenbeckia platyclada]
          Length = 875

 Score =  217 bits (552), Expect(3) = 1e-76
 Identities = 130/222 (58%), Positives = 142/222 (63%), Gaps = 58/222 (26%)
 Frame = +3

Query: 153  AYPILEFLEEWVT*NFE------LYPNLRRFLLMVAG-WVAI--------VTLI*LRRRL 287
            AYPILEFLEEW T NFE      + P   +  + V G WV I         TL  LRRR+
Sbjct: 437  AYPILEFLEEWSTENFEEEISPAVIPQAAK--IFVNGCWVGIHRDPDLLVKTLRQLRRRV 494

Query: 288  EVNTEVGVV*DIHLKEL*IYTDYGRCSRPLFIMEKQRLLIKK-DFQALQQRETPDEGGWH 464
            +VNTEVGVV DIHLKEL IYTDYGRCSRPLFI++KQRLLIKK D +ALQ RETP++GGWH
Sbjct: 495  DVNTEVGVVRDIHLKELRIYTDYGRCSRPLFIVDKQRLLIKKRDIRALQLRETPEDGGWH 554

Query: 465  DLVAKGFVEYVDTEEEETNMISMTINSL-------------------------------- 548
            DLVAKGF+EY+DTEEEET MISMTIN L                                
Sbjct: 555  DLVAKGFIEYIDTEEEETTMISMTINDLITARVNPEEAYSETYTHCEIHPSLILGVCASI 614

Query: 549  ----------RNTYQSAMGKQAMGIYVTNYQFEMDILAYVLY 644
                      RNTYQSAMGKQAMGIYVTNYQF MD LAYVLY
Sbjct: 615  IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLY 656



 Score = 84.7 bits (208), Expect(3) = 1e-76
 Identities = 40/45 (88%), Positives = 41/45 (91%)
 Frame = +1

Query: 16  EGKLAKPLLLHNSQWGMMCLAGTPEGQACGLVKNVALMVYITVGS 150
           EGKLAKP  LHNSQWGMMC A TPEGQACGLVKN+ALMVYITVGS
Sbjct: 391 EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS 435



 Score = 33.5 bits (75), Expect(3) = 1e-76
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +1

Query: 643 TQATEHLHFRQLPAGI 690
           T+A EHLHFRQLPAGI
Sbjct: 665 TRAMEHLHFRQLPAGI 680


>ref|XP_007025631.1| DNA-directed RNA polymerase family protein isoform 1 [Theobroma
            cacao] gi|508780997|gb|EOY28253.1| DNA-directed RNA
            polymerase family protein isoform 1 [Theobroma cacao]
          Length = 1189

 Score =  216 bits (550), Expect(3) = 2e-76
 Identities = 129/221 (58%), Positives = 141/221 (63%), Gaps = 57/221 (25%)
 Frame = +3

Query: 153  AYPILEFLEEWVT*NFE-----LYPNLRRFLLMVAG-WVAI--------VTLI*LRRRLE 290
            AYPILEFLEEW T NFE     + P   +  + V G WV +         TL  LRRR++
Sbjct: 541  AYPILEFLEEWGTENFEEISPAVIPQATK--IFVNGCWVGVHRNPDMLVTTLRRLRRRVD 598

Query: 291  VNTEVGVV*DIHLKEL*IYTDYGRCSRPLFIMEKQRLLIKK-DFQALQQRETPDEGGWHD 467
            VNTEVGVV DI LKEL IYTDYGRCSRPLFI+EKQRLLIKK D  ALQQRE+P++GGWHD
Sbjct: 599  VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESPEDGGWHD 658

Query: 468  LVAKGFVEYVDTEEEETNMISMTINSL--------------------------------- 548
            LVAKGF+EY+DTEEEET MISMTIN L                                 
Sbjct: 659  LVAKGFIEYIDTEEEETTMISMTINDLVQARVNPEEAYSETYTHCEIHPSLILGVCASII 718

Query: 549  ---------RNTYQSAMGKQAMGIYVTNYQFEMDILAYVLY 644
                     RNTYQSAMGKQAMGIYVTNYQF MD LAYVLY
Sbjct: 719  PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLY 759



 Score = 84.7 bits (208), Expect(3) = 2e-76
 Identities = 40/45 (88%), Positives = 41/45 (91%)
 Frame = +1

Query: 16  EGKLAKPLLLHNSQWGMMCLAGTPEGQACGLVKNVALMVYITVGS 150
           EGKLAKP  LHNSQWGMMC A TPEGQACGLVKN+ALMVYITVGS
Sbjct: 495 EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS 539



 Score = 33.5 bits (75), Expect(3) = 2e-76
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +1

Query: 643 TQATEHLHFRQLPAGI 690
           T+A EHLHFRQLPAGI
Sbjct: 768 TRAMEHLHFRQLPAGI 783


>gb|AAY89346.1| RNA polymerase II second largest subunit [Nicotiana sylvestris]
          Length = 1087

 Score =  216 bits (550), Expect(3) = 2e-76
 Identities = 128/220 (58%), Positives = 140/220 (63%), Gaps = 56/220 (25%)
 Frame = +3

Query: 153  AYPILEFLEEWVT*NFE-----LYPNLRRFLLMVAGWVAIV--------TLI*LRRRLEV 293
            AYPILEFLEEW T NFE     + P   + + +   WV I         TL  LRRR++V
Sbjct: 444  AYPILEFLEEWGTENFEEISPAVIPQATK-IFVNGTWVGIHRDPDMLVRTLRRLRRRVDV 502

Query: 294  NTEVGVV*DIHLKEL*IYTDYGRCSRPLFIMEKQRLLIKK-DFQALQQRETPDEGGWHDL 470
            NTEVGVV DI LKEL IYTDYGRCSRPLFI+EKQRLLIKK D Q LQQRE+P+EGGWHDL
Sbjct: 503  NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQTLQQRESPEEGGWHDL 562

Query: 471  VAKGFVEYVDTEEEETNMISMTINSL---------------------------------- 548
            VAKG++EY+DTEEEET MISMTIN L                                  
Sbjct: 563  VAKGYIEYIDTEEEETTMISMTINDLXQARLNPEEAYSDTYTHCEIHPSLILGVCASIIP 622

Query: 549  --------RNTYQSAMGKQAMGIYVTNYQFEMDILAYVLY 644
                    RNTYQSAMGKQAMGIYVTNYQF MD LAYVLY
Sbjct: 623  FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLY 662



 Score = 84.7 bits (208), Expect(3) = 2e-76
 Identities = 40/45 (88%), Positives = 41/45 (91%)
 Frame = +1

Query: 16  EGKLAKPLLLHNSQWGMMCLAGTPEGQACGLVKNVALMVYITVGS 150
           EGKLAKP  LHNSQWGMMC A TPEGQACGLVKN+ALMVYITVGS
Sbjct: 398 EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS 442



 Score = 33.5 bits (75), Expect(3) = 2e-76
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +1

Query: 643 TQATEHLHFRQLPAGI 690
           T+A EHLHFRQLPAGI
Sbjct: 671 TRAMEHLHFRQLPAGI 686


>ref|XP_007025632.1| DNA-directed RNA polymerase family protein isoform 2 [Theobroma
           cacao] gi|508780998|gb|EOY28254.1| DNA-directed RNA
           polymerase family protein isoform 2 [Theobroma cacao]
          Length = 809

 Score =  216 bits (550), Expect(3) = 2e-76
 Identities = 129/221 (58%), Positives = 141/221 (63%), Gaps = 57/221 (25%)
 Frame = +3

Query: 153 AYPILEFLEEWVT*NFE-----LYPNLRRFLLMVAG-WVAI--------VTLI*LRRRLE 290
           AYPILEFLEEW T NFE     + P   +  + V G WV +         TL  LRRR++
Sbjct: 191 AYPILEFLEEWGTENFEEISPAVIPQATK--IFVNGCWVGVHRNPDMLVTTLRRLRRRVD 248

Query: 291 VNTEVGVV*DIHLKEL*IYTDYGRCSRPLFIMEKQRLLIKK-DFQALQQRETPDEGGWHD 467
           VNTEVGVV DI LKEL IYTDYGRCSRPLFI+EKQRLLIKK D  ALQQRE+P++GGWHD
Sbjct: 249 VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESPEDGGWHD 308

Query: 468 LVAKGFVEYVDTEEEETNMISMTINSL--------------------------------- 548
           LVAKGF+EY+DTEEEET MISMTIN L                                 
Sbjct: 309 LVAKGFIEYIDTEEEETTMISMTINDLVQARVNPEEAYSETYTHCEIHPSLILGVCASII 368

Query: 549 ---------RNTYQSAMGKQAMGIYVTNYQFEMDILAYVLY 644
                    RNTYQSAMGKQAMGIYVTNYQF MD LAYVLY
Sbjct: 369 PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLY 409



 Score = 84.7 bits (208), Expect(3) = 2e-76
 Identities = 40/45 (88%), Positives = 41/45 (91%)
 Frame = +1

Query: 16  EGKLAKPLLLHNSQWGMMCLAGTPEGQACGLVKNVALMVYITVGS 150
           EGKLAKP  LHNSQWGMMC A TPEGQACGLVKN+ALMVYITVGS
Sbjct: 145 EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS 189



 Score = 33.5 bits (75), Expect(3) = 2e-76
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +1

Query: 643 TQATEHLHFRQLPAGI 690
           T+A EHLHFRQLPAGI
Sbjct: 418 TRAMEHLHFRQLPAGI 433


>ref|XP_006487405.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Citrus
            sinensis]
          Length = 1195

 Score =  214 bits (546), Expect(3) = 5e-76
 Identities = 130/221 (58%), Positives = 141/221 (63%), Gaps = 57/221 (25%)
 Frame = +3

Query: 153  AYPILEFLEEWVT*NFE-----LYPNLRRFLLMVAG-WVAI--------VTLI*LRRRLE 290
            AYPILEFLEEW T NFE     + P   +  + V G WV I         TL  LRRR++
Sbjct: 544  AYPILEFLEEWGTENFEEISPAVIPQATK--IFVNGCWVGIHRDPEMLVKTLRRLRRRVD 601

Query: 291  VNTEVGVV*DIHLKEL*IYTDYGRCSRPLFIMEKQRLLIKK-DFQALQQRETPDEGGWHD 467
            VNTEVGVV DI LKEL IYTDYGRCSRPLFI+EKQRLLIKK D  ALQQRE+P++GGWHD
Sbjct: 602  VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHD 661

Query: 468  LVAKGFVEYVDTEEEETNMISMTINSL--------------------------------- 548
            LVAKGF+EY+DTEEEET MISMTIN L                                 
Sbjct: 662  LVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASII 721

Query: 549  ---------RNTYQSAMGKQAMGIYVTNYQFEMDILAYVLY 644
                     RNTYQSAMGKQAMGIYVTNYQF MD LAYVLY
Sbjct: 722  PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLY 762



 Score = 84.7 bits (208), Expect(3) = 5e-76
 Identities = 40/45 (88%), Positives = 41/45 (91%)
 Frame = +1

Query: 16  EGKLAKPLLLHNSQWGMMCLAGTPEGQACGLVKNVALMVYITVGS 150
           EGKLAKP  LHNSQWGMMC A TPEGQACGLVKN+ALMVYITVGS
Sbjct: 498 EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS 542



 Score = 33.5 bits (75), Expect(3) = 5e-76
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +1

Query: 643 TQATEHLHFRQLPAGI 690
           T+A EHLHFRQLPAGI
Sbjct: 771 TRAMEHLHFRQLPAGI 786


>ref|XP_006423594.1| hypothetical protein CICLE_v10027701mg [Citrus clementina]
            gi|557525528|gb|ESR36834.1| hypothetical protein
            CICLE_v10027701mg [Citrus clementina]
          Length = 1195

 Score =  214 bits (546), Expect(3) = 5e-76
 Identities = 130/221 (58%), Positives = 141/221 (63%), Gaps = 57/221 (25%)
 Frame = +3

Query: 153  AYPILEFLEEWVT*NFE-----LYPNLRRFLLMVAG-WVAI--------VTLI*LRRRLE 290
            AYPILEFLEEW T NFE     + P   +  + V G WV I         TL  LRRR++
Sbjct: 544  AYPILEFLEEWGTENFEEISPAVIPQATK--IFVNGCWVGIHRDPEMLVKTLRRLRRRVD 601

Query: 291  VNTEVGVV*DIHLKEL*IYTDYGRCSRPLFIMEKQRLLIKK-DFQALQQRETPDEGGWHD 467
            VNTEVGVV DI LKEL IYTDYGRCSRPLFI+EKQRLLIKK D  ALQQRE+P++GGWHD
Sbjct: 602  VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHD 661

Query: 468  LVAKGFVEYVDTEEEETNMISMTINSL--------------------------------- 548
            LVAKGF+EY+DTEEEET MISMTIN L                                 
Sbjct: 662  LVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASII 721

Query: 549  ---------RNTYQSAMGKQAMGIYVTNYQFEMDILAYVLY 644
                     RNTYQSAMGKQAMGIYVTNYQF MD LAYVLY
Sbjct: 722  PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLY 762



 Score = 84.7 bits (208), Expect(3) = 5e-76
 Identities = 40/45 (88%), Positives = 41/45 (91%)
 Frame = +1

Query: 16  EGKLAKPLLLHNSQWGMMCLAGTPEGQACGLVKNVALMVYITVGS 150
           EGKLAKP  LHNSQWGMMC A TPEGQACGLVKN+ALMVYITVGS
Sbjct: 498 EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS 542



 Score = 33.5 bits (75), Expect(3) = 5e-76
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +1

Query: 643 TQATEHLHFRQLPAGI 690
           T+A EHLHFRQLPAGI
Sbjct: 771 TRAMEHLHFRQLPAGI 786


>ref|XP_007148168.1| hypothetical protein PHAVU_006G185800g [Phaseolus vulgaris]
            gi|561021391|gb|ESW20162.1| hypothetical protein
            PHAVU_006G185800g [Phaseolus vulgaris]
          Length = 1194

 Score =  214 bits (545), Expect(3) = 7e-76
 Identities = 126/220 (57%), Positives = 140/220 (63%), Gaps = 56/220 (25%)
 Frame = +3

Query: 153  AYPILEFLEEWVT*NFE-----LYPNLRRFLLMVAGWVAIV--------TLI*LRRRLEV 293
            AYPILEFLEEW T NFE     + P   + + +   W+ I         TL  LRRR++V
Sbjct: 544  AYPILEFLEEWGTENFEEISPAVIPQATK-IFVNGSWMGIHRDPDMLVRTLRKLRRRVDV 602

Query: 294  NTEVGVV*DIHLKEL*IYTDYGRCSRPLFIMEKQRLLIKK-DFQALQQRETPDEGGWHDL 470
            NTEVGVV DI LKEL IYTDYGRCSRPLFI++KQRLLIKK D  ALQQRE+P+EGGWHDL
Sbjct: 603  NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKRDIHALQQRESPEEGGWHDL 662

Query: 471  VAKGFVEYVDTEEEETNMISMTINSL---------------------------------- 548
            V+KGF+EY+DTEEEET MISMTIN L                                  
Sbjct: 663  VSKGFIEYIDTEEEETTMISMTINDLVQARLNPEDAYSDTYTHCEIHPSLILGVCASIIP 722

Query: 549  --------RNTYQSAMGKQAMGIYVTNYQFEMDILAYVLY 644
                    RNTYQSAMGKQAMGIYVTNYQF MD LAYVLY
Sbjct: 723  FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLY 762



 Score = 84.7 bits (208), Expect(3) = 7e-76
 Identities = 40/45 (88%), Positives = 41/45 (91%)
 Frame = +1

Query: 16  EGKLAKPLLLHNSQWGMMCLAGTPEGQACGLVKNVALMVYITVGS 150
           EGKLAKP  LHNSQWGMMC A TPEGQACGLVKN+ALMVYITVGS
Sbjct: 498 EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS 542



 Score = 33.5 bits (75), Expect(3) = 7e-76
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +1

Query: 643 TQATEHLHFRQLPAGI 690
           T+A EHLHFRQLPAGI
Sbjct: 771 TRAMEHLHFRQLPAGI 786


>ref|XP_007214559.1| hypothetical protein PRUPE_ppa000425mg [Prunus persica]
            gi|462410424|gb|EMJ15758.1| hypothetical protein
            PRUPE_ppa000425mg [Prunus persica]
          Length = 1192

 Score =  214 bits (545), Expect(3) = 7e-76
 Identities = 129/221 (58%), Positives = 140/221 (63%), Gaps = 57/221 (25%)
 Frame = +3

Query: 153  AYPILEFLEEWVT*NFE-----LYPNLRRFLLMVAG-WVAI--------VTLI*LRRRLE 290
            AYPILEFLEEW T NFE     + P   +  + V G WV I         TL  LRRR++
Sbjct: 541  AYPILEFLEEWGTENFEEISPAVIPQATK--IFVNGCWVGIHRDPEMLVKTLRKLRRRVD 598

Query: 291  VNTEVGVV*DIHLKEL*IYTDYGRCSRPLFIMEKQRLLIKK-DFQALQQRETPDEGGWHD 467
            VNTEVGVV DI LKEL IYTDYGRCSRPLFI++KQRLLIKK D  ALQQRE P++GGWHD
Sbjct: 599  VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHALQQRENPEDGGWHD 658

Query: 468  LVAKGFVEYVDTEEEETNMISMTINSL--------------------------------- 548
            LVAKGF+EY+DTEEEET MISMTIN L                                 
Sbjct: 659  LVAKGFIEYIDTEEEETTMISMTINDLVQARLNPEEAYSDTYTHCEIHPSLILGVCASII 718

Query: 549  ---------RNTYQSAMGKQAMGIYVTNYQFEMDILAYVLY 644
                     RNTYQSAMGKQAMGIYVTNYQF MD LAYVLY
Sbjct: 719  PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLY 759



 Score = 84.7 bits (208), Expect(3) = 7e-76
 Identities = 40/45 (88%), Positives = 41/45 (91%)
 Frame = +1

Query: 16  EGKLAKPLLLHNSQWGMMCLAGTPEGQACGLVKNVALMVYITVGS 150
           EGKLAKP  LHNSQWGMMC A TPEGQACGLVKN+ALMVYITVGS
Sbjct: 495 EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS 539



 Score = 33.5 bits (75), Expect(3) = 7e-76
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +1

Query: 643 TQATEHLHFRQLPAGI 690
           T+A EHLHFRQLPAGI
Sbjct: 768 TRAMEHLHFRQLPAGI 783


>ref|XP_004134705.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cucumis
            sativus] gi|449479313|ref|XP_004155566.1| PREDICTED:
            DNA-directed RNA polymerase II subunit RPB2-like [Cucumis
            sativus]
          Length = 1199

 Score =  214 bits (544), Expect(3) = 9e-76
 Identities = 129/221 (58%), Positives = 141/221 (63%), Gaps = 57/221 (25%)
 Frame = +3

Query: 153  AYPILEFLEEWVT*NFE-----LYPNLRRFLLMVAG-WVAI--------VTLI*LRRRLE 290
            AYPILEFLEEW T NFE     + P   +  + V G WV I         TL  LRRR++
Sbjct: 549  AYPILEFLEEWGTENFEEISPAVIPQATK--IFVNGCWVGIHRDPEMLVKTLRRLRRRVD 606

Query: 291  VNTEVGVV*DIHLKEL*IYTDYGRCSRPLFIMEKQRLLIKK-DFQALQQRETPDEGGWHD 467
            VNTEVGVV DI LKEL IYTDYGRCSRPLFI+EKQRLLIKK D  ALQQRE+P++GGWHD
Sbjct: 607  VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESPEDGGWHD 666

Query: 468  LVAKGFVEYVDTEEEETNMISMTINSL--------------------------------- 548
            LVAKGF+EY+DTEEEET MISMTI+ L                                 
Sbjct: 667  LVAKGFIEYIDTEEEETTMISMTISDLIQARINPVEAYSDTYTHCEIHPSLILGVCASII 726

Query: 549  ---------RNTYQSAMGKQAMGIYVTNYQFEMDILAYVLY 644
                     RNTYQSAMGKQAMGIYVTNYQF MD LAYVLY
Sbjct: 727  PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLY 767



 Score = 84.7 bits (208), Expect(3) = 9e-76
 Identities = 40/45 (88%), Positives = 41/45 (91%)
 Frame = +1

Query: 16  EGKLAKPLLLHNSQWGMMCLAGTPEGQACGLVKNVALMVYITVGS 150
           EGKLAKP  LHNSQWGMMC A TPEGQACGLVKN+ALMVYITVGS
Sbjct: 503 EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS 547



 Score = 33.5 bits (75), Expect(3) = 9e-76
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +1

Query: 643 TQATEHLHFRQLPAGI 690
           T+A EHLHFRQLPAGI
Sbjct: 776 TRAMEHLHFRQLPAGI 791


>ref|XP_004294022.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Fragaria
            vesca subsp. vesca]
          Length = 1191

 Score =  214 bits (544), Expect(3) = 9e-76
 Identities = 129/221 (58%), Positives = 140/221 (63%), Gaps = 57/221 (25%)
 Frame = +3

Query: 153  AYPILEFLEEWVT*NFE-----LYPNLRRFLLMVAG-WVAIV--------TLI*LRRRLE 290
            AYPILEFLEEW T NFE     + P   +  + V G WV I         TL  LRRR++
Sbjct: 541  AYPILEFLEEWGTENFEEISPAVIPQATK--IFVNGCWVGIHRDPEMLVRTLRKLRRRVD 598

Query: 291  VNTEVGVV*DIHLKEL*IYTDYGRCSRPLFIMEKQRLLIKK-DFQALQQRETPDEGGWHD 467
            VNTEVGVV DI LKEL IYTDYGRCSRPLFI++KQRLLIKK D  ALQQRE P++GGWHD
Sbjct: 599  VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHALQQRENPEDGGWHD 658

Query: 468  LVAKGFVEYVDTEEEETNMISMTINSL--------------------------------- 548
            LVAKGF+EY+DTEEEET MISMTIN L                                 
Sbjct: 659  LVAKGFIEYIDTEEEETTMISMTINDLVQARLNPEEAYSDTYTHCEIHPSLILGVCASII 718

Query: 549  ---------RNTYQSAMGKQAMGIYVTNYQFEMDILAYVLY 644
                     RNTYQSAMGKQAMGIYVTNYQF MD LAYVLY
Sbjct: 719  PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLY 759



 Score = 84.7 bits (208), Expect(3) = 9e-76
 Identities = 40/45 (88%), Positives = 41/45 (91%)
 Frame = +1

Query: 16  EGKLAKPLLLHNSQWGMMCLAGTPEGQACGLVKNVALMVYITVGS 150
           EGKLAKP  LHNSQWGMMC A TPEGQACGLVKN+ALMVYITVGS
Sbjct: 495 EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS 539



 Score = 33.5 bits (75), Expect(3) = 9e-76
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +1

Query: 643 TQATEHLHFRQLPAGI 690
           T+A EHLHFRQLPAGI
Sbjct: 768 TRAMEHLHFRQLPAGI 783


>gb|EXC18122.1| DNA-directed RNA polymerase II subunit [Morus notabilis]
          Length = 1193

 Score =  213 bits (543), Expect(3) = 1e-75
 Identities = 129/221 (58%), Positives = 140/221 (63%), Gaps = 57/221 (25%)
 Frame = +3

Query: 153  AYPILEFLEEWVT*NFE-----LYPNLRRFLLMVAG-WVAI--------VTLI*LRRRLE 290
            AYPILEFLEEW T NFE     + P   +  + V G WV I         TL  LRRR++
Sbjct: 542  AYPILEFLEEWGTENFEEISPAVIPQATK--IFVNGCWVGIHRDPDMLVKTLRRLRRRVD 599

Query: 291  VNTEVGVV*DIHLKEL*IYTDYGRCSRPLFIMEKQRLLIKK-DFQALQQRETPDEGGWHD 467
            VNTEVGVV DI LKEL IYTDYGRCSRPLFI+EKQRLLIKK D +ALQQRETP+E GWHD
Sbjct: 600  VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIRALQQRETPEEAGWHD 659

Query: 468  LVAKGFVEYVDTEEEETNMISMTINSL--------------------------------- 548
            LV+ GF+EY+DTEEEET MISMTIN L                                 
Sbjct: 660  LVSNGFIEYIDTEEEETTMISMTINDLVQARLNPEEAYSETYTHCEIHPSLILGVCASII 719

Query: 549  ---------RNTYQSAMGKQAMGIYVTNYQFEMDILAYVLY 644
                     RNTYQSAMGKQAMGIYVTNYQF MD LAYVLY
Sbjct: 720  PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLY 760



 Score = 84.7 bits (208), Expect(3) = 1e-75
 Identities = 40/45 (88%), Positives = 41/45 (91%)
 Frame = +1

Query: 16  EGKLAKPLLLHNSQWGMMCLAGTPEGQACGLVKNVALMVYITVGS 150
           EGKLAKP  LHNSQWGMMC A TPEGQACGLVKN+ALMVYITVGS
Sbjct: 496 EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS 540



 Score = 33.5 bits (75), Expect(3) = 1e-75
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +1

Query: 643 TQATEHLHFRQLPAGI 690
           T+A EHLHFRQLPAGI
Sbjct: 769 TRAMEHLHFRQLPAGI 784


>gb|AAS86834.1| RNA polymerase II second largest subunit, partial [Camellia
           japonica]
          Length = 559

 Score =  217 bits (552), Expect(3) = 2e-75
 Identities = 130/221 (58%), Positives = 142/221 (64%), Gaps = 57/221 (25%)
 Frame = +3

Query: 153 AYPILEFLEEWVT*NFE-----LYPNLRRFLLMVAG-WVAI--------VTLI*LRRRLE 290
           AYPILEFLEEW T NFE     + P   +  + V G WV I         TL  LRRR++
Sbjct: 45  AYPILEFLEEWGTENFEEISPAVIPQATK--IFVNGCWVGIHRDPDMLVKTLRRLRRRVD 102

Query: 291 VNTEVGVV*DIHLKEL*IYTDYGRCSRPLFIMEKQRLLIKK-DFQALQQRETPDEGGWHD 467
           VNTEVGVV DI LKEL IYTDYGRCSRPLFI+EKQRLLIKK D Q+LQQRETP++GGWHD
Sbjct: 103 VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQSLQQRETPEDGGWHD 162

Query: 468 LVAKGFVEYVDTEEEETNMISMTINSL--------------------------------- 548
           LVAKG++EY+DTEEEET MISMTIN L                                 
Sbjct: 163 LVAKGYIEYIDTEEEETTMISMTINDLITARLNPEEAYSETYTHCEIHPSLILGVCASII 222

Query: 549 ---------RNTYQSAMGKQAMGIYVTNYQFEMDILAYVLY 644
                    RNTYQSAMGKQAMGIYVTNYQF MD LAYVLY
Sbjct: 223 PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLY 263



 Score = 80.5 bits (197), Expect(3) = 2e-75
 Identities = 38/43 (88%), Positives = 39/43 (90%)
 Frame = +1

Query: 22  KLAKPLLLHNSQWGMMCLAGTPEGQACGLVKNVALMVYITVGS 150
           KLAKP  LHNSQWGMMC A TPEGQACGLVKN+ALMVYITVGS
Sbjct: 1   KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS 43



 Score = 33.5 bits (75), Expect(3) = 2e-75
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +1

Query: 643 TQATEHLHFRQLPAGI 690
           T+A EHLHFRQLPAGI
Sbjct: 272 TRAMEHLHFRQLPAGI 287


>gb|AAZ08467.1| RNA polymerase II second largest subunit [Linanthus californicus]
          Length = 733

 Score =  213 bits (543), Expect(3) = 3e-75
 Identities = 128/221 (57%), Positives = 141/221 (63%), Gaps = 57/221 (25%)
 Frame = +3

Query: 153 AYPILEFLEEWVT*NFE-----LYPNLRRFLLMVAG-WVAI--------VTLI*LRRRLE 290
           AYPILEFLEEW T NFE     + P   +  + V G WV I         TL  LRRR++
Sbjct: 83  AYPILEFLEEWGTENFEEISPAVIPQATK--IFVNGCWVGIHRDPDMLVKTLRRLRRRVD 140

Query: 291 VNTEVGVV*DIHLKEL*IYTDYGRCSRPLFIMEKQRLLIKK-DFQALQQRETPDEGGWHD 467
           VNTEVGVV DI LKEL IYTDYGRCSRPLFI+E QRLLIKK D QALQQRE+P++GGWHD
Sbjct: 141 VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVENQRLLIKKRDIQALQQRESPEDGGWHD 200

Query: 468 LVAKGFVEYVDTEEEETNMISMTINSL--------------------------------- 548
           LV+KG++EY+DTEEEET MISMTIN L                                 
Sbjct: 201 LVSKGYIEYIDTEEEETTMISMTINDLVSARANKKEAYSDTYTHCEIHPSLILGVCASII 260

Query: 549 ---------RNTYQSAMGKQAMGIYVTNYQFEMDILAYVLY 644
                    RNTYQSAMGKQAMGIYVTNYQF MD LAYVLY
Sbjct: 261 PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLY 301



 Score = 84.7 bits (208), Expect(3) = 3e-75
 Identities = 40/45 (88%), Positives = 41/45 (91%)
 Frame = +1

Query: 16  EGKLAKPLLLHNSQWGMMCLAGTPEGQACGLVKNVALMVYITVGS 150
           EGKLAKP  LHNSQWGMMC A TPEGQACGLVKN+ALMVYITVGS
Sbjct: 37  EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS 81



 Score = 32.3 bits (72), Expect(3) = 3e-75
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = +1

Query: 643 TQATEHLHFRQLPAGI 690
           T+A EHLHFR+LPAGI
Sbjct: 310 TRAMEHLHFRELPAGI 325