BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia24_contig00002725
         (5341 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I sub...  1941   0.0  
emb|CBI29879.3| unnamed protein product [Vitis vinifera]             1917   0.0  
ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform ...  1806   0.0  
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni...  1802   0.0  
ref|XP_007028853.1| Nuclear RNA polymerase A1, putative isoform ...  1781   0.0  
ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I sub...  1746   0.0  
ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citr...  1745   0.0  
ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I sub...  1705   0.0  
ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I sub...  1697   0.0  
ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I sub...  1695   0.0  
ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  1692   0.0  
ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I sub...  1686   0.0  
ref|XP_007145632.1| hypothetical protein PHAVU_007G255400g [Phas...  1681   0.0  
ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I sub...  1674   0.0  
ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I sub...  1660   0.0  
ref|XP_006290488.1| hypothetical protein CARUB_v10016563mg [Caps...  1654   0.0  
ref|NP_191325.1| nuclear RNA polymerase A1 [Arabidopsis thaliana...  1640   0.0  
ref|XP_002876429.1| hypothetical protein ARALYDRAFT_486216 [Arab...  1634   0.0  
gb|EYU39881.1| hypothetical protein MIMGU_mgv1a000122mg [Mimulus...  1627   0.0  
ref|XP_006402858.1| hypothetical protein EUTSA_v10005738mg [Eutr...  1625   0.0  

>ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
            vinifera]
          Length = 1740

 Score = 1941 bits (5027), Expect = 0.0
 Identities = 1051/1727 (60%), Positives = 1245/1727 (72%), Gaps = 46/1727 (2%)
 Frame = -3

Query: 5189 TEGATESIEAVRFGFFTDEEVRKHSFVQSTSADLLHGVV-PAXXXXXXXXXXXXXDRAPC 5013
            T G TE +EAV+F FFTDEEVRK+SF + TS  +L  V  P              +  PC
Sbjct: 54   TSGTTEFVEAVKFSFFTDEEVRKYSFKKITSPLMLDSVQRPVPGGLYDPALGSIDENTPC 113

Query: 5012 KSCGQ-SGRCPGHCGHVALILPVYNPLLFNMLYAVLQRTCFFCHHFRAIRSKVENCISQL 4836
            +SCGQ S  CPGHCGH+ L+  VYNPLLFN+L+ +LQ+TCFFCHHF+   S V+  +SQL
Sbjct: 114  QSCGQRSFYCPGHCGHIDLVSSVYNPLLFNLLHNLLQKTCFFCHHFKTSSSLVQKYVSQL 173

Query: 4835 ELIMKGNVIGAKNLDSLYLEGHSNQEDSDGSHVS--STVSLGAQYHSLEHSKQQKWTSLQ 4662
            ELI KG+V+GAKNLDS+     S  EDSDGSHVS  STV+  A+ +   H KQQ+WTSLQ
Sbjct: 174  ELISKGDVVGAKNLDSISPSESSYPEDSDGSHVSCSSTVNSSARDNCSVHLKQQEWTSLQ 233

Query: 4661 LTEAMSILDNFLKPKHVDCKNCGAKNPKITKPTFGWFKTS-MPDAHARANRIKGCKLKGS 4485
              EAMS++DNFLK KH DCKNC AK+P++TKPTFGWF  + + DA  RAN I+G KL+  
Sbjct: 234  CIEAMSVMDNFLKLKHRDCKNCKAKSPQVTKPTFGWFHMAGLSDAQTRANVIRGSKLERP 293

Query: 4484 FVGEIEEDPSSDIENADNTSPWGNGSDTSE----ITPINE-----TKRKKNKRGQAHPEL 4332
                 EE  SS++EN ++  PWG+G DT E    I P +      TKR + K  QA  E 
Sbjct: 294  LSRVAEEKSSSEVENVNDMFPWGDGVDTDETHSSIAPTDGIQDTVTKRLERKGAQAPIEF 353

Query: 4331 LKES--FSGSLLPSEVRALLKLLWENEFELCSFICDIQRDSSDVLKDNAGYSMFFLDTIL 4158
            +K+   FSG LLPSEVR +++ LWENE ELCSFI DI ++      + AGYSMFFL+TIL
Sbjct: 354  IKQKSFFSGPLLPSEVRDIMERLWENEAELCSFISDILQERLGASGNKAGYSMFFLETIL 413

Query: 4157 VPPIKFRPPSKGGDSVMEHPQTVLLGKVIEANMRLGNAYESKSGHSKTVVDRWIALQQSV 3978
            VPPIKFRPPSKG  SVMEHPQTVLLGKV++AN+ LGNA+ + S  SK ++ RW+ LQQS+
Sbjct: 414  VPPIKFRPPSKGQISVMEHPQTVLLGKVLQANIALGNAHANNSERSK-IISRWMDLQQSI 472

Query: 3977 NVSFDSKTM-GQGQRVGASGICQLLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEI 3801
            NV FD KT  GQGQR   SGICQLLEKK+G+FRQKMMGKRVNFACRSVISPDPYLAVNEI
Sbjct: 473  NVLFDGKTAAGQGQRDTGSGICQLLEKKEGVFRQKMMGKRVNFACRSVISPDPYLAVNEI 532

Query: 3800 GIPPYFALRLTYPERVTPWNIGKLRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXX 3621
            GIPPYFALRLTYPE+VTPWN+ KLRDAIING EIHPGATHY DK S   L          
Sbjct: 533  GIPPYFALRLTYPEKVTPWNVVKLRDAIINGPEIHPGATHYVDKLSTVKLAVNKKMRISI 592

Query: 3620 XXRKLPSSRGVVTQPGKSGDIDFEGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLK 3441
               KLPSSRGVV QPG+S D +FEGKIV RHLQDGDIVLVNRQPTLHKPSIMAHVVRVLK
Sbjct: 593  SR-KLPSSRGVVAQPGRSSDNEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLK 651

Query: 3440 GEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRAL 3261
            GEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQY+VPSRG+PIR L
Sbjct: 652  GEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYIVPSRGDPIRGL 711

Query: 3260 IQDHIISAVLLTKKDTFLSRDEYSQLLYXXXXXXXXXXXXSCKPGQKVCLV-SEDEMQTL 3084
            IQDHI+SAVLLTKKDTFL+R++Y+QLLY              KPG+KV ++ SEDEMQ L
Sbjct: 712  IQDHIVSAVLLTKKDTFLTREQYNQLLYSSGLSSGSGSFIG-KPGKKVSVLDSEDEMQPL 770

Query: 3083 QPAILKPEPLWTGKQVITAVLNHITKGHPPFTVEKEGKIPREYFGSNT-------GEDDL 2925
             PAI KPEPLW+GKQVITAVLNHIT+G  PFT EK+GKIPREYFGS         G+D  
Sbjct: 771  LPAIWKPEPLWSGKQVITAVLNHITRGRKPFTTEKDGKIPREYFGSEIDEKKSGKGKDPG 830

Query: 2924 SVERKTSXXXXXXXXXXXXEILYVSKNDLVRGVIDKAQFGSYGLVHTVQELYGPKTAGIL 2745
            S  RK                L + KN+LVRGVIDKAQF  YGLVH VQELYG  TAGIL
Sbjct: 831  SDRRKEKRIEKKHGEYK----LLIHKNELVRGVIDKAQFDKYGLVHMVQELYGSNTAGIL 886

Query: 2744 LSAFSRLFTVFLQMHGFTCGVDDLLILKYRDIERKQELEKCQDFGXXXXXXXXXXXXKRK 2565
            LS  SRLFTVFLQMHGFTCGVDDLLI    DI RK EL+K ++ G               
Sbjct: 887  LSVLSRLFTVFLQMHGFTCGVDDLLISPNYDIARKIELDKSENIGEL------------- 933

Query: 2564 DIRNVYSKFLGIKYDEIDPKELPNEIEYGICRYGEVGTTSLDNEMRKHLSNASTEVNKDL 2385
                V+ KF+G  + +IDP +L  E+E  I   GE   T LD  M+  L+  +++VNKDL
Sbjct: 934  ----VHCKFIGSNHGKIDPVKLQVEVEKIILSNGEAAITRLDRMMKNELNELTSKVNKDL 989

Query: 2384 FVKGLLKPFPKNCFSLMTTTGAKGGMVNFQQVSSLLGQQDLEGKRVPRMVSGKTLPSFLP 2205
             +KGL+KPFPKNC SLMTTTGAKG  VNF Q+SS LGQQDLEGKRVPRMVSGKTLP F P
Sbjct: 990  LLKGLVKPFPKNCLSLMTTTGAKGSTVNFSQISSFLGQQDLEGKRVPRMVSGKTLPCFPP 1049

Query: 2204 WDWSPRAGGFISDNFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLK 2025
            WD + RAGGFISD FLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLK
Sbjct: 1050 WDCAARAGGFISDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLK 1109

Query: 2024 VCYDHTVRDADGSIIQFSYGEDGVDVHQTSFISKFKALEENHQILREKFLHHLDKSNSYI 1845
            VCYD+TVRD+DGSI+QF+YG+DGVDVHQTSFI++F+AL  N +++ EKF     K N YI
Sbjct: 1110 VCYDYTVRDSDGSIVQFNYGDDGVDVHQTSFITEFEALAVNEEVVCEKFGQD-GKFNGYI 1168

Query: 1844 EHLPPKLEKKAREFIKGVPEKKKHIDD----EDFMKLMNHKYFSSLAQPGEPVGVLAAQS 1677
            + LP +L KK ++FI+G  E+++  D+    +DF+ L+  KY SSLAQPGEPVGVLAAQS
Sbjct: 1169 QKLPKELRKKTKKFIEGFMEERQDFDNMKKQKDFVNLVKQKYISSLAQPGEPVGVLAAQS 1228

Query: 1676 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASVNIKTPIMTCPLLKEKSTDEIA 1497
            VGEPSTQMTLNTFHLAGRGE+NVTLGIPRLQEILMTA+ +IKTPIMTCPL   +S D+ A
Sbjct: 1229 VGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQEILMTAANDIKTPIMTCPLQMGRSKDD-A 1287

Query: 1496 KGLAQTLKKVTVGDITENIYVGL-----RHHLYSRVYTLAMNLYRPA---SNSGISLKDY 1341
            + LA  LKKVTV DITE++ V +     + H    +Y L M LY PA    ++GISL+D 
Sbjct: 1288 ERLAAKLKKVTVADITESMEVSIVPFTVQDHQTCSIYKLKMKLYEPALYPPHTGISLEDC 1347

Query: 1340 KETLTIQFVRELEDAIHNQINAIKRMHGIQAFDQPSQSKASKETDEEVS--GMRGEENDD 1167
            +ETL   FVRELEDAI N +  + ++ GI+ F   S+S ASKETDE+ S  G+ G   D+
Sbjct: 1348 EETLEAVFVRELEDAIQNHLLLLSKISGIKNFLPDSRSMASKETDEDASGDGLAGGNGDE 1407

Query: 1166 DGDVSXXXXXXXXXXXAQKRKRQSTDEVDYDDASEDEPNEGVLSTGFEQEKENGNCLDTE 987
            D D             AQKRK+Q++DE+DY D SE EP+EG  S G  +E      +D  
Sbjct: 1408 DDDGEDDGGAEDLGLDAQKRKQQASDEMDYGD-SEGEPDEGEPSAGLTEE------IDLV 1460

Query: 986  MDGDDVSRNSQDAEMDGDDDASNLPSESQSPXXXXXXXXXXXXXXXXXXRQLSRKDADRS 807
             D  ++S N +    D  D+ S +PS+S+S                    +  +KD DR+
Sbjct: 1461 EDEVEISNNEEVGISDPKDEDSKVPSKSKS----SKNKKAKTEAKRKKRFRAIKKDFDRA 1516

Query: 806  IEVXXXXXXXXXXXXXXXTDEDPHILLQQVALNVAKKVYIKSAGDIEHCQKIDCSNGQVL 627
            I V                  +PHILL Q+A   A KVYI+S+G I+ CQ IDC+  QV+
Sbjct: 1517 ILV---KAKGTYFEVHFRFTNEPHILLAQIAQKAANKVYIRSSGKIDLCQVIDCNKDQVI 1573

Query: 626  CH-------SNVSAEEKKRNSALLTAGVDFKAFWEMQENLDVNCIYSNNIHSMLKTYGVE 468
             +        N+  EEKK+  AL TAGVDF AFW+MQ+ LDV  +YSNN+H+ML T+GVE
Sbjct: 1574 YYGRDPKKRENIPGEEKKKLPALQTAGVDFTAFWKMQDELDVRYVYSNNVHAMLNTFGVE 1633

Query: 467  AARESIIREVSHVFNSYGITVDIRHLTLIADFMTHSGGYNPMSRSGGIAESVSPFSKITF 288
            AAR +II+EV +VFN+YG+ V+IRHL+LIADFMTHSGGY PM+R GGIAESVSPFSK+TF
Sbjct: 1634 AARATIIKEVFNVFNAYGVKVNIRHLSLIADFMTHSGGYRPMNRHGGIAESVSPFSKMTF 1693

Query: 287  ETASKFIVEAALYGLTDDLESPSARVCLGLPVKVGTGCFDVMQKVDI 147
            ETASKFIVEAA +G+TD+LES SAR+CLGLPVK+GTGCFD+MQK++I
Sbjct: 1694 ETASKFIVEAASHGMTDNLESASARICLGLPVKMGTGCFDLMQKIEI 1740


>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
          Length = 1669

 Score = 1917 bits (4967), Expect = 0.0
 Identities = 1043/1722 (60%), Positives = 1235/1722 (71%), Gaps = 37/1722 (2%)
 Frame = -3

Query: 5201 MSYRTEGATESIEAVRFGFFTDEEVRKHSFVQSTSADLLHGVV-PAXXXXXXXXXXXXXD 5025
            M++  EG TE +EAV+F FFTDEEVRK+SF + TS  +L  V  P              +
Sbjct: 1    MAHVIEGTTEFVEAVKFSFFTDEEVRKYSFKKITSPLMLDSVQRPVPGGLYDPALGSIDE 60

Query: 5024 RAPCKSCGQ-SGRCPGHCGHVALILPVYNPLLFNMLYAVLQRTCFFCHHFRAIRSKVENC 4848
              PC+SCGQ S  CPGHCGH+ L+  VYNPLLFN+L+ +LQ+TCFFCHHF+   S V+  
Sbjct: 61   NTPCQSCGQRSFYCPGHCGHIDLVSSVYNPLLFNLLHNLLQKTCFFCHHFKTSSSLVQKY 120

Query: 4847 ISQLELIMKGNVIGAKNLDSLYLEGHSNQEDSDGSHVS--STVSLGAQYHSLEHSKQQKW 4674
            +SQLELI KG+V+GAKNLDS+     S  EDSDGSHVS  STV+  A+ +   H KQQ+W
Sbjct: 121  VSQLELISKGDVVGAKNLDSISPSESSYPEDSDGSHVSCSSTVNSSARDNCSVHLKQQEW 180

Query: 4673 TSLQLTEAMSILDNFLKPKHVDCKNCGAKNPKITKPTFGWFKTS-MPDAHARANRIKGCK 4497
            TSLQ  EAMS++DNFLK KH DCKNC AK+P++TKPTFGWF  + + DA  RAN I+G K
Sbjct: 181  TSLQCIEAMSVMDNFLKLKHRDCKNCKAKSPQVTKPTFGWFHMAGLSDAQTRANVIRGSK 240

Query: 4496 LKGSFVGEIEEDPSSDIENADNTSPWGNGSDTSEITPINETKRKKNKRGQAHPELLKES- 4320
            L+    G   ++  S I   D         DT        TKR + K  QA  E +K+  
Sbjct: 241  LERPLNGVDTDETHSSIAPTDGIQ------DTV-------TKRLERKGAQAPIEFIKQKS 287

Query: 4319 -FSGSLLPSEVRALLKLLWENEFELCSFICDIQRDSSDVLKDNAGYSMFFLDTILVPPIK 4143
             FSG LLPSEVR +++ LWENE ELCSFI DI ++      + AGYSMFFL+TILVPPIK
Sbjct: 288  FFSGPLLPSEVRDIMERLWENEAELCSFISDILQERLGASGNKAGYSMFFLETILVPPIK 347

Query: 4142 FRPPSKGGDSVMEHPQTVLLGKVIEANMRLGNAYESKSGHSKTVVDRWIALQQSVNVSFD 3963
            FRPPSKG  SVMEHPQTVLLGKV++AN+ LGNA+ + S  SK ++ RW+ LQQS+NV FD
Sbjct: 348  FRPPSKGQISVMEHPQTVLLGKVLQANIALGNAHANNSERSK-IISRWMDLQQSINVLFD 406

Query: 3962 SKTM-GQGQRVGASGICQLLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPY 3786
             KT  GQGQR   SGICQLLEKK+G+FRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPY
Sbjct: 407  GKTAAGQGQRDTGSGICQLLEKKEGVFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPY 466

Query: 3785 FALRLTYPERVTPWNIGKLRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXXXXRKL 3606
            FALRLTYPE+VTPWN+ KLRDAIING EIHPGATHY DK S   L             KL
Sbjct: 467  FALRLTYPEKVTPWNVVKLRDAIINGPEIHPGATHYVDKLSTVKLAVNKKMRISISR-KL 525

Query: 3605 PSSRGVVTQPGKSGDIDFEGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTL 3426
            PSSRGVV QPG+S D +FEGKIV RHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTL
Sbjct: 526  PSSRGVVAQPGRSSDNEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTL 585

Query: 3425 RMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDHI 3246
            RMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQY+VPSRG+PIR LIQDHI
Sbjct: 586  RMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYIVPSRGDPIRGLIQDHI 645

Query: 3245 ISAVLLTKKDTFLSRDEYSQLLYXXXXXXXXXXXXSCKPGQKVCLV-SEDEMQTLQPAIL 3069
            +SAVLLTKKDTFL+R++Y+QLLY              KPG+KV ++ SEDEMQ L PAI 
Sbjct: 646  VSAVLLTKKDTFLTREQYNQLLYSSGLSSGSGSFIG-KPGKKVSVLDSEDEMQPLLPAIW 704

Query: 3068 KPEPLWTGKQVITAVLNHITKGHPPFTVEKEGKIPREYFGSNT-------GEDDLSVERK 2910
            KPEPLW+GKQVITAVLNHIT+G  PFT EK+GKIPREYFGS         G+D  S  RK
Sbjct: 705  KPEPLWSGKQVITAVLNHITRGRKPFTTEKDGKIPREYFGSEIDEKKSGKGKDPGSDRRK 764

Query: 2909 TSXXXXXXXXXXXXEILYVSKNDLVRGVIDKAQFGSYGLVHTVQELYGPKTAGILLSAFS 2730
                            L + KN+LVRGVIDKAQF  YGLVH VQELYG  TAGILLS  S
Sbjct: 765  EKRIEKKHGEYK----LLIHKNELVRGVIDKAQFDKYGLVHMVQELYGSNTAGILLSVLS 820

Query: 2729 RLFTVFLQMHGFTCGVDDLLILKYRDIERKQELEKCQDFGXXXXXXXXXXXXKRKDIRNV 2550
            RLFTVFLQMHGFTCGVDDLLI    DI RK EL+K ++ G                   V
Sbjct: 821  RLFTVFLQMHGFTCGVDDLLISPNYDIARKIELDKSENIGEL-----------------V 863

Query: 2549 YSKFLGIKYDEIDPKELPNEIEYGICRYGEVGTTSLDNEMRKHLSNASTEVNKDLFVKGL 2370
            + KF+G  + +IDP +L  E+E  I   GE   T LD  M+  L+  +++VNKDL +KGL
Sbjct: 864  HCKFIGSNHGKIDPVKLQVEVEKIILSNGEAAITRLDRMMKNELNELTSKVNKDLLLKGL 923

Query: 2369 LKPFPKNCFSLMTTTGAKGGMVNFQQVSSLLGQQDLEGKRVPRMVSGKTLPSFLPWDWSP 2190
            +KPFPKNC SLMTTTGAKG  VNF Q+SS LGQQDLEGKRVPRMVSGKTLP F PWD + 
Sbjct: 924  VKPFPKNCLSLMTTTGAKGSTVNFSQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDCAA 983

Query: 2189 RAGGFISDNFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDH 2010
            RAGGFISD FLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYD+
Sbjct: 984  RAGGFISDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDY 1043

Query: 2009 TVRDADGSIIQFSYGEDGVDVHQTSFISKFKALEENHQILREKFLHHLDKSNSYIEHLPP 1830
            TVRD+DGSI+QF+YG+DGVDVHQTSFI++F+AL  N +++ EKF     K N YI+ LP 
Sbjct: 1044 TVRDSDGSIVQFNYGDDGVDVHQTSFITEFEALAVNEEVVCEKFGQD-GKFNGYIQKLPK 1102

Query: 1829 KLEKKAREFIKGVPEKKKHIDD----EDFMKLMNHKYFSSLAQPGEPVGVLAAQSVGEPS 1662
            +L KK ++FI+G  E+++  D+    +DF+ L+  KY SSLAQPGEPVGVLAAQSVGEPS
Sbjct: 1103 ELRKKTKKFIEGFMEERQDFDNMKKQKDFVNLVKQKYISSLAQPGEPVGVLAAQSVGEPS 1162

Query: 1661 TQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASVNIKTPIMTCPLLKEKSTDEIAKGLAQ 1482
            TQMTLNTFHLAGRGE+NVTLGIPRLQEILMTA+ +IKTPIMTCPL   +S D+ A+ LA 
Sbjct: 1163 TQMTLNTFHLAGRGEVNVTLGIPRLQEILMTAANDIKTPIMTCPLQMGRSKDD-AERLAA 1221

Query: 1481 TLKKVTVGDITENIYVGL-----RHHLYSRVYTLAMNLYRPA---SNSGISLKDYKETLT 1326
             LKKVTV DITE++ V +     + H    +Y L M LY PA    ++GISL+D +ETL 
Sbjct: 1222 KLKKVTVADITESMEVSIVPFTVQDHQTCSIYKLKMKLYEPALYPPHTGISLEDCEETLE 1281

Query: 1325 IQFVRELEDAIHNQINAIKRMHGIQAFDQPSQSKASKETDEEVS--GMRGEENDDDGDVS 1152
              FVRELEDAI N +  + ++ GI+ F   S+S ASKETDE+ S  G+ G   D+D D  
Sbjct: 1282 AVFVRELEDAIQNHLLLLSKISGIKNFLPDSRSMASKETDEDASGDGLAGGNGDEDDDGE 1341

Query: 1151 XXXXXXXXXXXAQKRKRQSTDEVDYDDASEDEPNEGVLSTGFEQEKENGNCLDTEMDGDD 972
                       AQKRK+Q++DE+DY D SE EP+EG  S G  +E      +D   D  +
Sbjct: 1342 DDGGAEDLGLDAQKRKQQASDEMDYGD-SEGEPDEGEPSAGLTEE------IDLVEDEVE 1394

Query: 971  VSRNSQDAEMDGDDDASNLPSESQSPXXXXXXXXXXXXXXXXXXRQLSRKDADRSIEVXX 792
            +S N +    D  D+ S +PS+S+S                    +  +KD DR+I V  
Sbjct: 1395 ISNNEEVGISDPKDEDSKVPSKSKS----SKNKKAKTEAKRKKRFRAIKKDFDRAILV-- 1448

Query: 791  XXXXXXXXXXXXXTDEDPHILLQQVALNVAKKVYIKSAGDIEHCQKIDCSNGQVLCH--- 621
                            +PHILL Q+A   A KVYI+S+G I+ CQ IDC+  QV+ +   
Sbjct: 1449 -KAKGTYFEVHFRFTNEPHILLAQIAQKAANKVYIRSSGKIDLCQVIDCNKDQVIYYGRD 1507

Query: 620  ----SNVSAEEKKRNSALLTAGVDFKAFWEMQENLDVNCIYSNNIHSMLKTYGVEAARES 453
                 N+  EEKK+  AL TAGVDF AFW+MQ+ LDV  +YSNN+H+ML T+GVEAAR +
Sbjct: 1508 PKKRENIPGEEKKKLPALQTAGVDFTAFWKMQDELDVRYVYSNNVHAMLNTFGVEAARAT 1567

Query: 452  IIREVSHVFNSYGITVDIRHLTLIADFMTHSGGYNPMSRSGGIAESVSPFSKITFETASK 273
            II+EV +VFN+YG+ V+IRHL+LIADFMTHSGGY PM+R GGIAESVSPFSK+TFETASK
Sbjct: 1568 IIKEVFNVFNAYGVKVNIRHLSLIADFMTHSGGYRPMNRHGGIAESVSPFSKMTFETASK 1627

Query: 272  FIVEAALYGLTDDLESPSARVCLGLPVKVGTGCFDVMQKVDI 147
            FIVEAA +G+TD+LES SAR+CLGLPVK+GTGCFD+MQK++I
Sbjct: 1628 FIVEAASHGMTDNLESASARICLGLPVKMGTGCFDLMQKIEI 1669


>ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform 2 [Theobroma cacao]
            gi|508717459|gb|EOY09356.1| Nuclear RNA polymerase A1,
            putative isoform 2 [Theobroma cacao]
          Length = 1689

 Score = 1806 bits (4678), Expect = 0.0
 Identities = 996/1735 (57%), Positives = 1201/1735 (69%), Gaps = 50/1735 (2%)
 Frame = -3

Query: 5201 MSYRTEGATESIEAVRFGFFTDEEVRKHSFVQSTSADLLHGVV-PAXXXXXXXXXXXXXD 5025
            M+  TEGAT+S+EAVRF F T EEVRKHSF++ T+A+LL  +  P              D
Sbjct: 1    MAQITEGATDSVEAVRFNFMTTEEVRKHSFLKVTNANLLDLMDRPMPGGLYDAVLGPLED 60

Query: 5024 RAPCKSCGQSG-RCPGHCGHVALILPVYNPLLFNMLYAVLQRTCFFCHHFRAIRSKVENC 4848
            R PCKSCG     CPGHCGH+ L+ P+YNPLLFN L+ +LQR CFFC+HFRA +++VE C
Sbjct: 61   RTPCKSCGLLKLHCPGHCGHIDLVSPIYNPLLFNFLHTLLQRICFFCYHFRAEKTEVERC 120

Query: 4847 ISQLELIMKGNVIGAKNLDSLYLEGHSNQEDSDGSHVSSTVSLGAQYHSLEHSKQQKWTS 4668
            +SQL+LI  G+++GAK LDS   +  S  + ++GS  S ++      H+ E  K ++WTS
Sbjct: 121  VSQLKLIGNGDIVGAKRLDSDSADASSYSDYNEGSQESGSI-----VHNSEAVKPKEWTS 175

Query: 4667 LQLTEAMSILDNFLKPKHVDCKNCGAKNPKITKPTFGWFKTS-MPDAHARANRIKGCKLK 4491
            LQL EAMS+L+NFLK K+  CKNC AKNP ITKP FGW   + M  A  R N I+GCK+ 
Sbjct: 176  LQLMEAMSVLNNFLKLKYNKCKNCDAKNPNITKPVFGWLHMNGMLGAQMRENVIRGCKMV 235

Query: 4490 GSFVGEIEEDPSSDIENADNTSPWGNG-----SDTSEI----TPINETKRKKNKRGQAHP 4338
             +F     ++  S +E+AD+ S  GNG      DTSEI    +  N  K +K K+ Q   
Sbjct: 236  DTF----SDEAGSGLEDADDVSSSGNGVDIAEMDTSEIGFTGSEGNGAKARK-KKAQVPL 290

Query: 4337 ELLKES--FSGSLLPSEVRALLKLLWENEFELCSFICDIQRDSSDVLKDNAGYSMFFLDT 4164
            E +K+   FSG LLPSEV+ + KLLWENE ELCS I DIQ+          GYSMFFL+T
Sbjct: 291  EFMKQKNLFSGPLLPSEVKKITKLLWENEVELCSIISDIQQQG---FGKKVGYSMFFLET 347

Query: 4163 ILVPPIKFRPPSKGGDSVMEHPQTVLLGKVIEANMRLGNAYESKSGHSKTVVDRWIALQQ 3984
            ILVPPIKFR P+KGGDSVMEHPQTVLL KV++AN+ LGNAY +    SK VV  W+ LQQ
Sbjct: 348  ILVPPIKFRAPTKGGDSVMEHPQTVLLSKVLQANISLGNAYTNNLQSSKAVVRLWMDLQQ 407

Query: 3983 SVNVSFDSKT-MGQGQRVGASGICQLLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVN 3807
            SVN+ FDSKT M QG+ V +SGICQLLEKK+G+FRQKMMGKRVNFACRSVISPDPYLAVN
Sbjct: 408  SVNLLFDSKTAMSQGRDV-SSGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVN 466

Query: 3806 EIGIPPYFALRLTYPERVTPWNIGKLRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXX 3627
            EIGIPPYFALRLTYPERVTPWN+ KLR+AIINGSE HPGATHY DK S   L        
Sbjct: 467  EIGIPPYFALRLTYPERVTPWNVVKLREAIINGSEFHPGATHYVDKLSTKRLPPSQKARI 526

Query: 3626 XXXXRKLPSSRGVVTQPGKSGDIDFEGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRV 3447
                 KLPSSRG + QPGK+ D +FEGKIV RHLQDGD+VLVNRQPTLHKPSIMAHVVRV
Sbjct: 527  SISR-KLPSSRGAIAQPGKNLDYEFEGKIVLRHLQDGDVVLVNRQPTLHKPSIMAHVVRV 585

Query: 3446 LKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIR 3267
            LKGEKT+RMHYANCSTYNADFDGDE+NVHFPQDEISRAEAYNIVNANNQYV PS GEPIR
Sbjct: 586  LKGEKTIRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVRPSNGEPIR 645

Query: 3266 ALIQDHIISAVLLTKKDTFLSRDEYSQLLYXXXXXXXXXXXXSCKPGQKVCL-VSEDEMQ 3090
            ALIQDHI+SAVLLTK+DTFLSRDE++QLLY            S KPGQKV +  SE+ M 
Sbjct: 646  ALIQDHIVSAVLLTKRDTFLSRDEFNQLLYSSGVSSLAQNSFSGKPGQKVFVSTSEEGML 705

Query: 3089 TLQPAILKPEPLWTGKQVITAVLNHITKGHPPFTVEKEGKIPREYFGSNTGEDDLSVE-- 2916
             + PAILKP+PLWTGKQVI++VL+HIT+G PPFTV K  KIPR++F +   ++  S    
Sbjct: 706  PIIPAILKPKPLWTGKQVISSVLSHITRGRPPFTVGKTAKIPRDFFRNRRNKNKQSSREE 765

Query: 2915 -------RKTSXXXXXXXXXXXXEILYVSKNDLVRGVIDKAQFGSYGLVHTVQELYGPKT 2757
                   +K              E + + +NDLVRGVIDKAQF  YGLVHTVQELYG  T
Sbjct: 766  NQPKNDGQKAKVAEKNSKKEPDEEKILIYRNDLVRGVIDKAQFADYGLVHTVQELYGSNT 825

Query: 2756 AGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYRDIERKQELEKCQDFGXXXXXXXXXXX 2577
            AGILLS FSRLFTVFLQMHGFTCGVDDLLI++ +DIERK++LE C+              
Sbjct: 826  AGILLSVFSRLFTVFLQMHGFTCGVDDLLIMEDKDIERKKQLEDCE-------------- 871

Query: 2576 XKRKDIRNVYSKFLGIKYDEIDPKELPNEIEYGICRYGEVGTTSLDNEMRKHLS-NASTE 2400
               K +   + +  G+K +     EL  EIE  I R GE   T+LD +M   L+ N+S  
Sbjct: 872  ---KKVTEAHYELFGVKVNS--ETELQLEIERTIRRDGETALTALDRKMISVLNENSSKG 926

Query: 2399 VNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVNFQQVSSLLGQQDLEGKRVPRMVSGKTL 2220
            V  +L  +GL+K   +NC SLMTT+GAKG  VNFQQ+SS LGQQ+LEGKRVPRMVSGKTL
Sbjct: 927  VLTELLSEGLVKSMGENCISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTL 986

Query: 2219 PSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKN 2040
            P F PWDW+ RAGGFISD FL+GL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKN
Sbjct: 987  PCFHPWDWAARAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKN 1046

Query: 2039 LECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQTSFISKFKALEENHQILREKFLHHLDK 1860
            LECLK+ YDHTVRDADGSI+QF YGEDG+DVHQTSFI+KF+AL  N  ++ EK    L +
Sbjct: 1047 LECLKISYDHTVRDADGSIVQFIYGEDGIDVHQTSFIAKFEALALNQDMMSEKLCSQLGE 1106

Query: 1859 SNSYIEHLPPKLEKKAREFIKGVPEKKKH--IDDEDFMKLMNHKYFSSLAQPGEPVGVLA 1686
             +   + LP  L  KA +FI+   +K +H  I  +DF+ L+  K+ SSLAQPGEPVGVLA
Sbjct: 1107 PDDSDKILPDGLRSKAEQFIREEIKKYQHQKIKPKDFLNLLKLKFLSSLAQPGEPVGVLA 1166

Query: 1685 AQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASVNIKTPIMTCPLLKEKSTD 1506
            AQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAS++I+TP+MTCPL K K T 
Sbjct: 1167 AQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDIRTPVMTCPLHKGK-TK 1225

Query: 1505 EIAKGLAQTLKKVTVGDITENIYVGLRHHLYSR-----VYTLAMNLYRP---ASNSGISL 1350
            E A  LA  +KK+TV DI E++ V +            +Y L M L +P     NS I++
Sbjct: 1226 EDALCLANKMKKITVADILESMEVSVAPFAVDNGDICSIYKLKMMLGKPDKYFENSDITV 1285

Query: 1349 KDYKETLTIQFVRELEDAIHNQINAIKRMHGIQAFDQPSQSKASKETDEEVSGMRGEE-- 1176
            KD +  L + F+RELEDAI N +  + ++ GI+ F   SQ  AS E DE+VS  R  E  
Sbjct: 1286 KDCEHILKVVFLRELEDAIQNHLVLLSKISGIKKFMPDSQRNASNEMDEDVSEGRSRETK 1345

Query: 1175 ---NDDDGDVSXXXXXXXXXXXAQKRKRQSTDEVDYDDASEDEPNEGVLSTGFEQE---- 1017
               +DDD D             AQK+K+Q+TDE+DY+D SE E NEG      E E    
Sbjct: 1346 NDDDDDDDDADDEERAEDLGLDAQKQKQQTTDEMDYEDDSEVEQNEGASLAALESEIDMS 1405

Query: 1016 KENGNCLDTEMDGDDVSRNSQDAEMDGDDDASNLPSESQSPXXXXXXXXXXXXXXXXXXR 837
            ++    +   M G D  ++         ++ SN  S  +                     
Sbjct: 1406 EDETGTIQINMIGSDNGKDEISQSSPNLENRSNPKSREEK--------TGSEPKRKKMKA 1457

Query: 836  QLSRKDADRSIEVXXXXXXXXXXXXXXXTDEDPHILLQQVALNVAKKVYIKSAGDIEHCQ 657
            +  RK++DR+I                    +PHILL Q+A   AKKVYI+S G I+ C+
Sbjct: 1458 KFVRKESDRAI---FNAIRGLCFEVHFKLKNEPHILLAQIAEKTAKKVYIQSFGKIDQCR 1514

Query: 656  KIDCSNGQVLCH-----SNVSAEEKKRNSALLTAGVDFKAFWEMQENLDVNCIYSNNIHS 492
              DCS  QV  +        S  +K++  AL T GVDF AFW+M++++DV  +YSN+IH+
Sbjct: 1515 VTDCSENQVFYYGEDPKKRKSPSDKEKIQALHTTGVDFGAFWKMEDHIDVRYLYSNSIHA 1574

Query: 491  MLKTYGVEAARESIIREVSHVFNSYGITVDIRHLTLIADFMTHSGGYNPMSRSGGIAESV 312
            ML TYGVEAARE+IIRE+SHVF SYGI V+IRHLTLIADFMTHSG Y PMSR GGIAES+
Sbjct: 1575 MLNTYGVEAARETIIREISHVFTSYGIAVNIRHLTLIADFMTHSGRYRPMSRLGGIAESI 1634

Query: 311  SPFSKITFETASKFIVEAALYGLTDDLESPSARVCLGLPVKVGTGCFDVMQKVDI 147
            SPFSK++FETASKFIVEAA +GL D+LE+PS+R+CLGLPVK+GTG FD+MQKV+I
Sbjct: 1635 SPFSKMSFETASKFIVEAAKHGLVDNLETPSSRICLGLPVKMGTGSFDLMQKVEI 1689


>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
            communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
            polymerase I largest subunit, putative [Ricinus communis]
          Length = 1686

 Score = 1802 bits (4667), Expect = 0.0
 Identities = 993/1719 (57%), Positives = 1193/1719 (69%), Gaps = 38/1719 (2%)
 Frame = -3

Query: 5189 TEGATESIEAVRFGFFTDEEVRKHSFVQSTSADLLHGVV-PAXXXXXXXXXXXXXDRAPC 5013
            ++GATESI+++ F F TDEEVRKHSFV+ T+  LL  V  P              +R  C
Sbjct: 8    SKGATESIDSISFSFLTDEEVRKHSFVKITNPRLLDLVERPVPGGLYDPALGPLSERTIC 67

Query: 5012 KSCGQ-SGRCPGHCGHVALILPVYNPLLFNMLYAVLQRTCFFCHHFRAIRSKVENCISQL 4836
            K+CGQ S  CPGHCGH+ L+ PVYNPLLFN L+ +LQRTCF C HFR  R +VE CI QL
Sbjct: 68   KTCGQRSTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFLCFHFRMQRGQVEKCIKQL 127

Query: 4835 ELIMKGNVIGAKNLDSLYLEGHSNQEDSDGSHVSS-TVSLGAQYHSLEHSKQQKWTSLQL 4659
            ELI+KG+++GAK L+S+        E+SD SH S  T+  G Q +  EH++QQ WTSLQ 
Sbjct: 128  ELIVKGDIVGAKRLESVSPSEALYPEESDLSHESCPTIHSGVQCNDGEHTRQQGWTSLQF 187

Query: 4658 TEAMSILDNFLKPKHVDCKNCGAKNPKITKPTFGWFKTS-MPDAHARANRIKGCKLKGSF 4482
            TEAMS+L+NFLKPK   CKNC + NP ITKPTFGWF TS M DA  RAN I G +L G  
Sbjct: 188  TEAMSVLNNFLKPKFKKCKNCESSNPNITKPTFGWFHTSGMSDASIRANVITGHQLGGLL 247

Query: 4481 VGEIEEDPSSDIENADNTSPWGNGSDTSEITPINETKRKKNKRGQAHPELLKESFSGSLL 4302
              EIE   ++D+E+A       +G+         +  +KK ++        K +FS  LL
Sbjct: 248  GSEIEG--TTDVEDAAEPGDQHSGT---------KKHKKKERKEVLEFTRQKSTFSKQLL 296

Query: 4301 PSEVRALLKLLWENEFELCSFICDIQRDSSDVLKDNAGYSMFFLDTILVPPIKFRPPSKG 4122
            PSEV+  L+LLW+NE  +CSFI D+Q+      K  AG +MFFL+TILVPPIKFRPP+KG
Sbjct: 297  PSEVKEKLELLWKNEARICSFISDLQQQEFG--KRKAGPAMFFLETILVPPIKFRPPTKG 354

Query: 4121 GDSVMEHPQTVLLGKVIEANMRLGNAYESKSGHSKTVVDRWIALQQSVNVSFDSKTM-GQ 3945
            GDSVMEHPQTVLL KV+++N+ LG+A+ +K  HSK +V RW+ LQQS+N  FDSKT  G 
Sbjct: 355  GDSVMEHPQTVLLSKVLQSNISLGDAHINKE-HSK-IVRRWLDLQQSINTLFDSKTAKGP 412

Query: 3944 GQRVGASGICQLLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTY 3765
            GQR GA GICQLLEKK+G+FRQKMMGKRVN+ACRSVISPDPY+ VNEIGIPP FA++LTY
Sbjct: 413  GQREGAPGICQLLEKKEGLFRQKMMGKRVNYACRSVISPDPYIGVNEIGIPPCFAVKLTY 472

Query: 3764 PERVTPWNIGKLRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXXXXRKLPSSRGVV 3585
            PERVTPWNI KLR+A+INGSE HPGATHY DK S++ L             KLPSSRG V
Sbjct: 473  PERVTPWNIAKLRNAVINGSECHPGATHYVDKLSINKLPPARKARISISR-KLPSSRGAV 531

Query: 3584 TQPGKSGDIDFEGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANC 3405
            TQ GK  + +FEGKIV RHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANC
Sbjct: 532  TQAGKGSECEFEGKIVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANC 591

Query: 3404 S-TYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDHIISAVLL 3228
            S TYNADFDGDEMNVHFPQDE+SRAEAYNIVNANNQ+V PS GEP+R LIQDHI+SAVLL
Sbjct: 592  SITYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQFVRPSNGEPLRGLIQDHIVSAVLL 651

Query: 3227 TKKDTFLSRDEYSQLLYXXXXXXXXXXXXSCKPGQKVCLV-SEDEMQTLQPAILKPEPLW 3051
            TKKDTFLS+DE++QLLY              +PGQKV    SEDE+QTL PAI KP+PLW
Sbjct: 652  TKKDTFLSQDEFNQLLYSSGVSTVGPNSFHGRPGQKVLWSRSEDEIQTLPPAIWKPKPLW 711

Query: 3050 TGKQVITAVLNHITKGHPPFTVEKEGKIPREYFGSNTGEDDLSVERKTSXXXXXXXXXXX 2871
            TGKQVITA+LNHIT  HPPFTVEK+ KIP  +F S   ED    E K+            
Sbjct: 712  TGKQVITAILNHITSDHPPFTVEKDAKIPSNFFKSRANEDKPCQEEKSDKDAPAEKEPDE 771

Query: 2870 XEILYVSKNDLVRGVIDKAQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFT 2691
             ++L V KN+LVRGVIDK QFG YGLVHTV EL G  TAGILLS  SRLFT +LQMHGFT
Sbjct: 772  EKML-VYKNELVRGVIDKGQFGEYGLVHTVHELLGSHTAGILLSVLSRLFTAYLQMHGFT 830

Query: 2690 CGVDDLLILKYRDIERKQELEKCQDFGXXXXXXXXXXXXKRKDIRNVYSKFLGIKYDEI- 2514
            CGVDDLLIL  +D ERK++LE C+  G                   V+  F+GIK ++I 
Sbjct: 831  CGVDDLLILTNKDEERKKQLEWCEKSGEA-----------------VHRNFIGIKDEKIK 873

Query: 2513 -DPKELPNEIEYGICRYGEVGTTSLDNEMRKHLSN-ASTEVNKDLFVKGLLKPFPKNCFS 2340
             DP  +   IE  I   G+     LD +M   L+   S+ V  +L   GLLKP  KNC S
Sbjct: 874  IDPVAMQLNIEKTIRSDGDSALAYLDRQMSNELNTKTSSGVISNLLSDGLLKPSGKNCIS 933

Query: 2339 LMTTTGAKGGMVNFQQVSSLLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNF 2160
            LMTT+GAKG  VNFQQ+SS LGQQ+LEGKRVPRMVSGKTLP F PWDW+ R+GG+I+D F
Sbjct: 934  LMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARSGGYITDRF 993

Query: 2159 LTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSII 1980
            LTGL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLK+ YDHTVRDADGS++
Sbjct: 994  LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKIGYDHTVRDADGSVV 1053

Query: 1979 QFSYGEDGVDVHQTSFISKFKALEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREFI 1800
            QF YGEDGVDVHQTSFI+KFK L  N  ++ ++    L   NSYI  LP  L++KA  F+
Sbjct: 1054 QFYYGEDGVDVHQTSFIAKFKELALNQDMIYKRSGGQLGAFNSYISELPEALKEKADRFL 1113

Query: 1799 KGVP----EKKKHIDDEDFMKLMNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHL 1632
                         +  ED   LM  K+  SLAQPGEPVGVLAAQSVGEPSTQMTLNTFHL
Sbjct: 1114 DDFSIMGRIASNLVKREDLYNLMKQKFLLSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHL 1173

Query: 1631 AGRGEMNVTLGIPRLQEILMTASVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDI 1452
            AGRGEMNVTLGIPRLQEILMTAS++IKTPIMTCP L+E  T+E A  LA  L+KVTV DI
Sbjct: 1174 AGRGEMNVTLGIPRLQEILMTASIDIKTPIMTCP-LQEGRTNEDADHLADKLRKVTVADI 1232

Query: 1451 TENIYV-----GLRHHLYSRVYTLAMNLYRPA---SNSGISLKDYKETLTIQFVRELEDA 1296
             E++ V      ++     R+Y L M LYRPA     + IS++D++ETL + F+RELEDA
Sbjct: 1233 VESMEVSVVPFAIQDGGVCRIYKLKMKLYRPAHYPQYANISVEDWEETLEVVFLRELEDA 1292

Query: 1295 IHNQINAIKRMHGIQAFDQPSQSKASKETDEEVSG--MRGEENDDDGDVSXXXXXXXXXX 1122
            I N +  + R+ GI+ F   S+S+AS E DE+V+G     EE DDD D            
Sbjct: 1293 IQNHMFLLSRISGIKDFLPESRSRASGEADEDVAGDMSHREERDDDNDDDDGERADDLGL 1352

Query: 1121 XAQKRKRQSTDEVDYDDASEDEPNEGVLS-----TGFEQEKENGNCLDTEMDGDDVSRN- 960
             AQKRK Q+TDE+DYDD  E+E NEG  +     +GFE E + G+  +TE+  D +  N 
Sbjct: 1353 DAQKRKLQATDEMDYDDGFEEELNEGESTASEEESGFESEIDQGD-NETEISNDVMLDNE 1411

Query: 959  -SQDAEMDGDDDASNLPSESQSPXXXXXXXXXXXXXXXXXXRQLSRKDADRSIEVXXXXX 783
             S+   +       +    ++SP                   ++S KD DR+I V     
Sbjct: 1412 ASETLPLRKPSKPKSKKKAAESPSHGEKSKDKKKKPKAKRKSRIS-KDFDRAIFV---EA 1467

Query: 782  XXXXXXXXXXTDEDPHILLQQVALNVAKKVYIKSAGDIEHCQKIDCSNGQVLCHS----- 618
                         +PHILL ++A   AKKVYI++ G IE C+  DC   QV+ +      
Sbjct: 1468 RKMHFEVHFKFTNEPHILLAEIAQKTAKKVYIQNPGKIEQCRVTDCKESQVIYYGKDPKE 1527

Query: 617  --NVSAEEKKRNSALLTAGVDFKAFWEMQENLDVNCIYSNNIHSMLKTYGVEAARESIIR 444
              ++  + K++  AL   GVDF  FW+MQ++LDV  IYSNNIH+MLKTYGVEAARE+IIR
Sbjct: 1528 RVDLKPDVKEKVPALHATGVDFNTFWKMQDHLDVRYIYSNNIHAMLKTYGVEAARETIIR 1587

Query: 443  EVSHVFNSYGITVDIRHLTLIADFMTHSGGYNPMSRSGGIAESVSPFSKITFETASKFIV 264
            E++HVF SYGI V  RHL+LIADFMTH+GGY PMSR GGIAES+SPFSK++FETASKFIV
Sbjct: 1588 EINHVFKSYGIAVSNRHLSLIADFMTHTGGYRPMSRMGGIAESISPFSKMSFETASKFIV 1647

Query: 263  EAALYGLTDDLESPSARVCLGLPVKVGTGCFDVMQKVDI 147
            EAAL+G  D+LE+PSAR+CLGLPVK+GTG FD+MQK++I
Sbjct: 1648 EAALHGEIDNLETPSARICLGLPVKMGTGSFDLMQKLEI 1686


>ref|XP_007028853.1| Nuclear RNA polymerase A1, putative isoform 1 [Theobroma cacao]
            gi|508717458|gb|EOY09355.1| Nuclear RNA polymerase A1,
            putative isoform 1 [Theobroma cacao]
          Length = 1665

 Score = 1781 bits (4613), Expect = 0.0
 Identities = 985/1730 (56%), Positives = 1191/1730 (68%), Gaps = 45/1730 (2%)
 Frame = -3

Query: 5201 MSYRTEGATESIEAVRFGFFTDEEVRKHSFVQSTSADLLHGVV-PAXXXXXXXXXXXXXD 5025
            M+  TEGAT+S+EAVRF F T EEVRKHSF++ T+A+LL  +  P              D
Sbjct: 1    MAQITEGATDSVEAVRFNFMTTEEVRKHSFLKVTNANLLDLMDRPMPGGLYDAVLGPLED 60

Query: 5024 RAPCKSCGQSG-RCPGHCGHVALILPVYNPLLFNMLYAVLQRTCFFCHHFRAIRSKVENC 4848
            R PCKSCG     CPGHCGH+ L+ P+YNPLLFN L+ +LQR CFFC+HFRA +++VE C
Sbjct: 61   RTPCKSCGLLKLHCPGHCGHIDLVSPIYNPLLFNFLHTLLQRICFFCYHFRAEKTEVERC 120

Query: 4847 ISQLELIMKGNVIGAKNLDSLYLEGHSNQEDSDGSHVSSTVSLGAQYHSLEHSKQQKWTS 4668
            +SQL+LI  G+++GAK LDS   +  S  + ++GS  S ++      H+ E  K ++WTS
Sbjct: 121  VSQLKLIGNGDIVGAKRLDSDSADASSYSDYNEGSQESGSI-----VHNSEAVKPKEWTS 175

Query: 4667 LQLTEAMSILDNFLKPKHVDCKNCGAKNPKITKPTFGWFKTS-MPDAHARANRIKGCKLK 4491
            LQL EAMS+L+NFLK K+  CKNC AKNP ITKP FGW   + M  A  R N I+GCK+ 
Sbjct: 176  LQLMEAMSVLNNFLKLKYNKCKNCDAKNPNITKPVFGWLHMNGMLGAQMRENVIRGCKMV 235

Query: 4490 GSFVGEIEEDPSSDIENADNTSPWGNG-----SDTSEI----TPINETKRKKNKRGQAHP 4338
             +F     ++  S +E+AD+ S  GNG      DTSEI    +  N  K +K K+ Q   
Sbjct: 236  DTF----SDEAGSGLEDADDVSSSGNGVDIAEMDTSEIGFTGSEGNGAKARK-KKAQVPL 290

Query: 4337 ELLKES--FSGSLLPSEVRALLKLLWENEFELCSFICDIQRDSSDVLKDNAGYSMFFLDT 4164
            E +K+   FSG LLPSEV+ + KLLWENE ELCS I DIQ+          GYSMFFL+T
Sbjct: 291  EFMKQKNLFSGPLLPSEVKKITKLLWENEVELCSIISDIQQQG---FGKKVGYSMFFLET 347

Query: 4163 ILVPPIKFRPPSKGGDSVMEHPQTVLLGKVIEANMRLGNAYESKSGHSKTVVDRWIALQQ 3984
            ILVPPIKFR P+KGGDSVMEHPQTVLL KV++AN+ LGNAY +    SK VV  W+ LQQ
Sbjct: 348  ILVPPIKFRAPTKGGDSVMEHPQTVLLSKVLQANISLGNAYTNNLQSSKAVVRLWMDLQQ 407

Query: 3983 SVNVSFDSKT-MGQGQRVGASGICQLLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVN 3807
            SVN+ FDSKT M QG+ V +SGICQLLEKK+G+FRQKMMGKRVNFACRSVISPDPYLAVN
Sbjct: 408  SVNLLFDSKTAMSQGRDV-SSGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVN 466

Query: 3806 EIGIPPYFALRLTYPERVTPWNIGKLRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXX 3627
            EIGIPPYFALRLTYPERVTPWN+ KLR+AIINGSE HPGATHY DK S   L        
Sbjct: 467  EIGIPPYFALRLTYPERVTPWNVVKLREAIINGSEFHPGATHYVDKLSTKRLPPSQKARI 526

Query: 3626 XXXXRKLPSSRGVVTQPGKSGDIDFEGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRV 3447
                 KLPSSRG + QPGK+ D +FEGKIV RHLQDGD+VLVNRQPTLHKPSIMAHVVRV
Sbjct: 527  SISR-KLPSSRGAIAQPGKNLDYEFEGKIVLRHLQDGDVVLVNRQPTLHKPSIMAHVVRV 585

Query: 3446 LKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIR 3267
            LKGEKT+RMHYANCSTYNADFDGDE+NVHFPQDEISRAEAYNIVNANNQYV PS GEPIR
Sbjct: 586  LKGEKTIRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVRPSNGEPIR 645

Query: 3266 ALIQDHIISAVLLTKKDTFLSRDEYSQLLYXXXXXXXXXXXXSCKPGQKVCL-VSEDEMQ 3090
            ALIQDHI+SAVLLTK+DTFLSRDE++QLLY            S KPGQKV +  SE+ M 
Sbjct: 646  ALIQDHIVSAVLLTKRDTFLSRDEFNQLLYSSGVSSLAQNSFSGKPGQKVFVSTSEEGML 705

Query: 3089 TLQPAILKPEPLWTGKQVITAVLNHITKGHPPFTVEKEGKIPREYFGSNTGEDDLSVE-- 2916
             + PAILKP+PLWTGKQVI++VL+HIT+G PPFTV K  KIPR++F +   ++  S    
Sbjct: 706  PIIPAILKPKPLWTGKQVISSVLSHITRGRPPFTVGKTAKIPRDFFRNRRNKNKQSSREE 765

Query: 2915 -------RKTSXXXXXXXXXXXXEILYVSKNDLVRGVIDKAQFGSYGLVHTVQELYGPKT 2757
                   +K              E + + +NDLVRGVIDKAQF  YGLVHTVQELYG  T
Sbjct: 766  NQPKNDGQKAKVAEKNSKKEPDEEKILIYRNDLVRGVIDKAQFADYGLVHTVQELYGSNT 825

Query: 2756 AGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYRDIERKQELEKCQDFGXXXXXXXXXXX 2577
            AGILLS FSRLFTVFLQMHGFTCGVDDLLI++ +DIERK++LE C+              
Sbjct: 826  AGILLSVFSRLFTVFLQMHGFTCGVDDLLIMEDKDIERKKQLEDCE-------------- 871

Query: 2576 XKRKDIRNVYSKFLGIKYD-EIDPKELPNEIEYGICRYGEVGTTSLDNEMRKHLS-NAST 2403
               K +   + +  G+K + E  P EL  EIE  I R GE   T+LD +M   L+ N+S 
Sbjct: 872  ---KKVTEAHYELFGVKVNSETAPTELQLEIERTIRRDGETALTALDRKMISVLNENSSK 928

Query: 2402 EVNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVNFQQVSSLLGQQDLEGKRVPRMVSGKT 2223
             V  +L  +GL+K   +NC SLMTT+GAKG  VNFQQ+SS LGQQ+LEGKRVPRMVSGKT
Sbjct: 929  GVLTELLSEGLVKSMGENCISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKT 988

Query: 2222 LPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIK 2043
            LP F PWDW+ RAGGFISD FL+GL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIK
Sbjct: 989  LPCFHPWDWAARAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIK 1048

Query: 2042 NLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQTSFISKFKALEENHQILREKFLHHLD 1863
            NLECLK+ YDHTVRDADGSI+QF YGEDG+DVHQTSFI+KF+AL  N  ++ EK    L 
Sbjct: 1049 NLECLKISYDHTVRDADGSIVQFIYGEDGIDVHQTSFIAKFEALALNQDMMSEKLCSQLG 1108

Query: 1862 KSNSYIEHLPPKLEKKAREFIKGVPEKKKH--IDDEDFMKLMNHKYFSSLAQPGEPVGVL 1689
            + +   + LP  L  KA +FI+   +K +H  I  +DF+ L+  K+ SSLAQPGEPVGVL
Sbjct: 1109 EPDDSDKILPDGLRSKAEQFIREEIKKYQHQKIKPKDFLNLLKLKFLSSLAQPGEPVGVL 1168

Query: 1688 AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASVNIKTPIMTCPLLKEKST 1509
            AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAS++I+TP+MTCPL K K T
Sbjct: 1169 AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDIRTPVMTCPLHKGK-T 1227

Query: 1508 DEIAKGLAQTLKKVTVGDITENIYVGLRHHLYSR-----VYTLAMNLYRP---ASNSGIS 1353
             E A  LA  +KK+TV DI E++ V +            +Y L M L +P     NS I+
Sbjct: 1228 KEDALCLANKMKKITVADILESMEVSVAPFAVDNGDICSIYKLKMMLGKPDKYFENSDIT 1287

Query: 1352 LKDYKETLTIQFVRELEDAIHNQINAIKRMHGIQAFDQPSQSKASKETDEEVSGMRGEE- 1176
            +KD +  L + F+RELEDAI N +  + ++ GI+ F   SQ  AS E DE+VS  R  E 
Sbjct: 1288 VKDCEHILKVVFLRELEDAIQNHLVLLSKISGIKKFMPDSQRNASNEMDEDVSEGRSRET 1347

Query: 1175 -NDDDGDVSXXXXXXXXXXXAQKRKRQSTDEVDYDDASED-EPNEGVLSTGFEQEKENGN 1002
             NDDD D                      D+ D ++ +ED   +   L +  +  ++   
Sbjct: 1348 KNDDDDD---------------------DDDADDEERAEDLGASLAALESEIDMSEDETG 1386

Query: 1001 CLDTEMDGDDVSRNSQDAEMDGDDDASNLPSESQSPXXXXXXXXXXXXXXXXXXRQLSRK 822
             +   M G D  ++         ++ SN  S  +                     +  RK
Sbjct: 1387 TIQINMIGSDNGKDEISQSSPNLENRSNPKSREEK--------TGSEPKRKKMKAKFVRK 1438

Query: 821  DADRSIEVXXXXXXXXXXXXXXXTDEDPHILLQQVALNVAKKVYIKSAGDIEHCQKIDCS 642
            ++DR+I                    +PHILL Q+A   AKKVYI+S G I+ C+  DCS
Sbjct: 1439 ESDRAI---FNAIRGLCFEVHFKLKNEPHILLAQIAEKTAKKVYIQSFGKIDQCRVTDCS 1495

Query: 641  NGQVLCH-----SNVSAEEKKRNSALLTAGVDFKAFWEMQENLDVNCIYSNNIHSMLKTY 477
              QV  +        S  +K++  AL T GVDF AFW+M++++DV  +YSN+IH+ML TY
Sbjct: 1496 ENQVFYYGEDPKKRKSPSDKEKIQALHTTGVDFGAFWKMEDHIDVRYLYSNSIHAMLNTY 1555

Query: 476  GVEAARESIIREVSHVFNSYGITVDIRHLTLIADFMTHSGGYNPMSRSGGIAESVSPFSK 297
            GVEAARE+IIRE+SHVF SYGI V+IRHLTLIADFMTHSG Y PMSR GGIAES+SPFSK
Sbjct: 1556 GVEAARETIIREISHVFTSYGIAVNIRHLTLIADFMTHSGRYRPMSRLGGIAESISPFSK 1615

Query: 296  ITFETASKFIVEAALYGLTDDLESPSARVCLGLPVKVGTGCFDVMQKVDI 147
            ++FETASKFIVEAA +GL D+LE+PS+R+CLGLPVK+GTG FD+MQKV+I
Sbjct: 1616 MSFETASKFIVEAAKHGLVDNLETPSSRICLGLPVKMGTGSFDLMQKVEI 1665


>ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Citrus
            sinensis]
          Length = 1715

 Score = 1746 bits (4522), Expect = 0.0
 Identities = 972/1753 (55%), Positives = 1182/1753 (67%), Gaps = 68/1753 (3%)
 Frame = -3

Query: 5201 MSYRTEGATESIEAVRFGFFTDEEVRKHSFVQSTSADLLHGVV-PAXXXXXXXXXXXXXD 5025
            M+  TE  TES++AV F F TDEEVRK SF++     LL  V  P              +
Sbjct: 1    MNQTTEVTTESVKAVWFSFLTDEEVRKQSFLKLKEPLLLDRVGRPLPGGLYDPILGPLDE 60

Query: 5024 RAPCKSCGQSG-RCPGHCGHVALILPVYNPLLFNMLYAVLQRTCFFCHHFRAIRSKVENC 4848
             + CK+CGQ    CPGH GH+ L++PVYNPLLFN+LY +L+R CFFCHHF+A R +VE C
Sbjct: 61   TSSCKTCGQRQFLCPGHFGHIDLVVPVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKC 120

Query: 4847 ISQLELIMKGNVIGAKNLDSLYLEGHSNQEDSDGSHVSST--VSLGAQYHSLEHSKQQKW 4674
            + +LELI+KG++I AK+LD       SN EDSD S+ SS   V+    Y ++ + K Q+W
Sbjct: 121  VRKLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 180

Query: 4673 TSLQLTEAMSILDNFLKPKHVDCKNCGAKNPKITKPTFGWFKTS-MPDAHARANRIKGCK 4497
            TSLQ  EA   L  FLK +   C NC AKNP+I+KPTFGW   + MP A  RAN I+GC 
Sbjct: 181  TSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCN 240

Query: 4496 LKGSFVGEIEEDP---SSDIENADNTSPWGNGSDTSEITPINETKRKKNKRGQAHPELLK 4326
            L  +F G  EE     SSD++  +  S  G    T +        R+  K   A P   K
Sbjct: 241  LGETFSGGEEEKDLGASSDVDAPETHSFNGTFPGTQDTAA-----RRHQKGSGAVPSGFK 295

Query: 4325 ES---FSGSLLPSEVRALLKLLWENEFELCSFICDIQRDSSDVLKDNAGYSMFFLDTILV 4155
            +    FSG LLPS+V+ +++ LWENEFELCSFI D+Q+         AG+S+FFL  +LV
Sbjct: 296  KQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQG---FGKKAGHSIFFLGAVLV 352

Query: 4154 PPIKFRPPSKGGDSVMEHPQTVLLGKVIEANMRLGNAYESKSGHSKTVVDRWIALQQSVN 3975
            PPIKFR PSKGGDSVMEHPQTVLL KV++AN+ L NAY ++  ++K +V RW+ LQQSVN
Sbjct: 353  PPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKIIVTRWMNLQQSVN 412

Query: 3974 VSFDSKTMGQGQRVGASGICQLLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGI 3795
            V FD K    GQR  ASGICQLLEKK+G+FRQK+MGKRVN+ACRSVISPDPYLAVNEIGI
Sbjct: 413  VLFDGKNAA-GQRDMASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGI 471

Query: 3794 PPYFALRLTYPERVTPWNIGKLRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXXXX 3615
            PPYFALRLTYPERVTPWN+ KLRD+IING+EIHPGATHY DK S   L            
Sbjct: 472  PPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIAR 531

Query: 3614 RKLPSSRGVVTQPGKSGDIDFEGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGE 3435
             KL +SRG + QPGK  D +FEGKIV RHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKGE
Sbjct: 532  -KLDTSRGAIVQPGKDSDNEFEGKIVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGE 590

Query: 3434 KTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQ 3255
            KTLRMHYANCSTYNADFDGDEMNVHFPQDE+SRAEAYNIVNANNQYV PS G+P+R+LIQ
Sbjct: 591  KTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQ 650

Query: 3254 DHIISAVLLTKKDTFLSRDEYSQLLYXXXXXXXXXXXXSCKPGQKVCLV-SEDEMQTLQP 3078
            DHI+SA LLTKKDTFL+RDE+ QLLY            + KPGQ+V +  SE E+  L P
Sbjct: 651  DHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLP 710

Query: 3077 AILKPEPLWTGKQVITAVLNHITKGHPPFTVEKEGKIPREYFGSNTGEDDLSV------- 2919
            AI KPEPLWTGKQVITAVLNHIT+G PPF VE+ GK+P+++F +    D  S        
Sbjct: 711  AIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDKG 770

Query: 2918 -------------------------ERKTSXXXXXXXXXXXXEILYVSKNDLVRGVIDKA 2814
                                     E K +            E L + KNDLVRGVIDKA
Sbjct: 771  KLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKA 830

Query: 2813 QFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYRDIERKQE 2634
            QF  YGLVHTVQELYG  TAG LLSA SRLFTVFLQMHGFTCGVDDLLILK ++ ERK  
Sbjct: 831  QFADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNH 890

Query: 2633 LEKCQDFGXXXXXXXXXXXXKRKDIRNVYSKFLGIKYD-EIDPKELPNEIEYGICRYGEV 2457
            L   ++ G                 + V+ + L ++   EIDP +L +EIE  +   G+ 
Sbjct: 891  LHGSEEIG-----------------KRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDA 933

Query: 2456 GTTSLDNEMRKHLS-NASTEVNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVNFQQVSSL 2280
                 D +M   L+ + S+ V  +L  +GLLKP  KN  SLMTT+GAKG  VNFQQ+SS 
Sbjct: 934  AVAYFDMKMTSQLNKHTSSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSH 993

Query: 2279 LGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHCMAGREGL 2100
            LGQQ+LEGKRVPRMVSGKTLPSF PWDW+PRAGGFI D FLTGL PQEYYFHCMAGREGL
Sbjct: 994  LGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGL 1053

Query: 2099 VDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQTSFISKF 1920
            VDTAVKTSRSGYLQRCLIKNLECLK+ YD++VRDADGSI+QF YGEDGVDVHQTSFISKF
Sbjct: 1054 VDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKF 1113

Query: 1919 KALEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVPEKKKHIDDEDFMKLMN 1740
             AL  N +++ +K    LD SN+YI  LP  L+  A +F          +  +DF+KL+ 
Sbjct: 1114 DALAANQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKF--LSNEMAKQDFLKLVK 1171

Query: 1739 HKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASV 1560
            HK+  SLAQPGEPVG+LA+QSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEIL  AS 
Sbjct: 1172 HKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASK 1231

Query: 1559 NIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYVGLRHHL-----YSRVYTL 1395
            +IKTP++TCPLL  K+ D+ AK LA  LKK+TV DI + I V +R           VY L
Sbjct: 1232 DIKTPVITCPLLVGKTEDD-AKRLADKLKKITVADIVKKISVKVRAFTSHDGQACSVYVL 1290

Query: 1394 AMNLYRP---ASNSGISLKDYKETLTIQFVRELEDAIHNQINAIKRMHGIQAFDQPSQSK 1224
             M LY+P    + + I+L+D++E L + FVRELED I N +  + +++GI+        K
Sbjct: 1291 TMELYKPKNYPTYTDITLEDWEEILEVVFVRELEDTIQNHLLLLSKINGIKNVASGLTQK 1350

Query: 1223 ASKETDEEVSG----MRGEENDDDGDVSXXXXXXXXXXXAQKRKRQSTDEVDYDDASEDE 1056
            AS ETD++ SG     RG+  DDD D +           A K+K+++TDE DY+D SE+E
Sbjct: 1351 ASNETDQDGSGNVSQCRGD--DDDADDADGEEAEDLGMDAHKQKQRATDEKDYEDGSEEE 1408

Query: 1055 PNEGVLSTGFEQEKENGNCLDTEMDGDDVSRNSQDAEMDGDDDAS-NLPSESQSP--XXX 885
             N+GV + GF  E +     ++E+D D      +D     + + S +  SE+  P     
Sbjct: 1409 MNDGVSAAGFGSEIDQA---ESEIDDDQAETEIEDDRATNEIETSQDQASENLKPFTPKS 1465

Query: 884  XXXXXXXXXXXXXXXRQLSRKDADRSIEVXXXXXXXXXXXXXXXTDEDPHILLQQVALNV 705
                            +L +KD DR+I V                  +P+ILL Q+A +V
Sbjct: 1466 SKKKSKSKSKRKKARAKLVKKDTDRAIYVAARGMHFEAHFKFI---NEPNILLAQIARHV 1522

Query: 704  AKKVYIKSAGDIEHCQKIDCSNGQVLCH-------SNVSAEEKKRNSALLTAGVDFKAFW 546
            AKKVYI+S+G I+ CQ  +C   QV+ +        ++  EEK++  AL T GVDF AFW
Sbjct: 1523 AKKVYIQSSGKIDQCQVTNCKESQVIYYGKDPKTREDIKPEEKEKVQALHTTGVDFHAFW 1582

Query: 545  EMQENLDVNCIYSNNIHSMLKTYGVEAARESIIREVSHVFNSYGITVDIRHLTLIADFMT 366
             +Q+ +DV  IYSNNI +ML+TYGVEAARE+IIRE+ HVF SYGI+V+ RHL+LIADFMT
Sbjct: 1583 RLQDFIDVRYIYSNNIQAMLETYGVEAARETIIREIKHVFGSYGISVNTRHLSLIADFMT 1642

Query: 365  HSGGYNPMSRSGGIAESVSPFSKITFETASKFIVEAALYGLTDDLESPSARVCLGLPVKV 186
            HSGGY PMSR GGIAESVSPFSK+TFETASKFIVEAA YG  D L++PSAR+CLGLPVK+
Sbjct: 1643 HSGGYRPMSRLGGIAESVSPFSKMTFETASKFIVEAASYGQVDKLDTPSARICLGLPVKM 1702

Query: 185  GTGCFDVMQKVDI 147
            GTG FD+MQK+++
Sbjct: 1703 GTGSFDLMQKLEV 1715


>ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citrus clementina]
            gi|557523327|gb|ESR34694.1| hypothetical protein
            CICLE_v10004132mg [Citrus clementina]
          Length = 1715

 Score = 1745 bits (4519), Expect = 0.0
 Identities = 972/1753 (55%), Positives = 1182/1753 (67%), Gaps = 68/1753 (3%)
 Frame = -3

Query: 5201 MSYRTEGATESIEAVRFGFFTDEEVRKHSFVQSTSADLLHGVV-PAXXXXXXXXXXXXXD 5025
            M+  TE  TES++AV F F TDEEVRK SF++ T   LL  V  P              +
Sbjct: 1    MNQTTEVTTESVKAVWFSFLTDEEVRKQSFLKLTEPLLLDRVSRPLPGGLYDPILGPLDE 60

Query: 5024 RAPCKSCGQSG-RCPGHCGHVALILPVYNPLLFNMLYAVLQRTCFFCHHFRAIRSKVENC 4848
             + CK+CGQ    CPGH GH+ L++ VYNPLLFN+LY +L+R CFFCHHF+A R +VE C
Sbjct: 61   TSSCKTCGQRQFLCPGHFGHIDLVVSVYNPLLFNLLYTLLKRICFFCHHFKASRREVEKC 120

Query: 4847 ISQLELIMKGNVIGAKNLDSLYLEGHSNQEDSDGSHVSST--VSLGAQYHSLEHSKQQKW 4674
            + +LELI+KG++I AK+LD       SN EDSD S+ SS   V+    Y ++ + K Q+W
Sbjct: 121  VRKLELIIKGDIIAAKSLDLDLPSESSNPEDSDVSNKSSCSMVTPRGNYDNVRNLKPQEW 180

Query: 4673 TSLQLTEAMSILDNFLKPKHVDCKNCGAKNPKITKPTFGWFKTS-MPDAHARANRIKGCK 4497
            TSLQ  EA   L  FLK +   C NC AKNP+I+KPTFGW   + MP A  RAN I+GC 
Sbjct: 181  TSLQFAEAKLALLQFLKIETTKCGNCKAKNPRISKPTFGWIHMNGMPHADIRANLIRGCN 240

Query: 4496 LKGSFVGEIEEDP---SSDIENADNTSPWGNGSDTSEITPINETKRKKNKRGQAHPELLK 4326
            L  +F G  EE     SSD++  +  S  G    T +        R+  K   A P   K
Sbjct: 241  LGETFSGGEEEKDLGTSSDVDAPETHSFNGAFPGTQDTAA-----RRHQKGSGAVPSGFK 295

Query: 4325 ES---FSGSLLPSEVRALLKLLWENEFELCSFICDIQRDSSDVLKDNAGYSMFFLDTILV 4155
            +    FSG LLPS+V+ +++ LWENEFELCSFI D+Q+         AG+S+FFL  +LV
Sbjct: 296  KQKDLFSGPLLPSDVKDIIEKLWENEFELCSFISDMQQQG---FGKKAGHSIFFLGVVLV 352

Query: 4154 PPIKFRPPSKGGDSVMEHPQTVLLGKVIEANMRLGNAYESKSGHSKTVVDRWIALQQSVN 3975
            PPIKFR PSKGGDSVMEHPQTVLL KV++AN+ L NAY ++  ++K +V RW+ LQQSVN
Sbjct: 353  PPIKFRLPSKGGDSVMEHPQTVLLSKVLQANIYLANAYVNQPDNAKVIVARWMNLQQSVN 412

Query: 3974 VSFDSKTMGQGQRVGASGICQLLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGI 3795
            V FD K    GQR  ASGICQLLEKK+G+FRQK+MGKRVN+ACRSVISPDPYLAVNEIGI
Sbjct: 413  VLFDGKNAA-GQRDVASGICQLLEKKEGLFRQKLMGKRVNYACRSVISPDPYLAVNEIGI 471

Query: 3794 PPYFALRLTYPERVTPWNIGKLRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXXXX 3615
            PPYFALRLTYPERVTPWN+ KLRD+IING+EIHPGATHY DK S   L            
Sbjct: 472  PPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISIGR 531

Query: 3614 RKLPSSRGVVTQPGKSGDIDFEGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGE 3435
             KL +SRG + QPGK  D +FEGK+V RHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKGE
Sbjct: 532  -KLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGE 590

Query: 3434 KTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQ 3255
            KTLRMHYANCSTYNADFDGDEMNVHFPQDE+SRAEAYNIVNANNQYV PS G+P+R+LIQ
Sbjct: 591  KTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLIQ 650

Query: 3254 DHIISAVLLTKKDTFLSRDEYSQLLYXXXXXXXXXXXXSCKPGQKVCLV-SEDEMQTLQP 3078
            DHI+SA LLTKKDTFL+RDE+ QLLY            + KPGQ+V +  SE E+  L P
Sbjct: 651  DHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLLP 710

Query: 3077 AILKPEPLWTGKQVITAVLNHITKGHPPFTVEKEGKIPREYFGSNTGEDDLSV------- 2919
            AI KPEPLWTGKQVITAVLNHIT+G PPF VE+ GK+P+++F +    D  S        
Sbjct: 711  AIWKPEPLWTGKQVITAVLNHITRGRPPFIVERGGKLPQDFFKTRFNADKQSGRKKNDKG 770

Query: 2918 -------------------------ERKTSXXXXXXXXXXXXEILYVSKNDLVRGVIDKA 2814
                                     E K +            E L + KNDLVRGVIDKA
Sbjct: 771  KLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDKA 830

Query: 2813 QFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYRDIERKQE 2634
            QF  YGLVHTVQELYG  TAG LLSA SRLFTVFLQMHGFTCGVDDLLILK ++ ERK  
Sbjct: 831  QFADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKNH 890

Query: 2633 LEKCQDFGXXXXXXXXXXXXKRKDIRNVYSKFLGIKYD-EIDPKELPNEIEYGICRYGEV 2457
            L   ++ G                 + V+ + L ++   EIDP +L +EIE  +   G+ 
Sbjct: 891  LHGSEEIG-----------------KRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDA 933

Query: 2456 GTTSLDNEMRKHLS-NASTEVNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVNFQQVSSL 2280
                 D +M   L+ + S+ V  DL  +GLLKP  KN  SLMTT+GAKG  VNFQQ+SS 
Sbjct: 934  AVAYFDMKMTSQLNKHTSSSVINDLLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSH 993

Query: 2279 LGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHCMAGREGL 2100
            LGQQ+LEGKRVPRMVSGKTLPSF PWDW+PRAGGFI D FLTGL PQEYYFHCMAGREGL
Sbjct: 994  LGQQELEGKRVPRMVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGL 1053

Query: 2099 VDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQTSFISKF 1920
            VDTAVKTSRSGYLQRCLIKNLECLK+ YD++VRDADGSI+QF YGEDGVDVHQTSFISKF
Sbjct: 1054 VDTAVKTSRSGYLQRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKF 1113

Query: 1919 KALEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGVPEKKKHIDDEDFMKLMN 1740
             AL  N +++ +K    LD SN+YI  LP  L+  A +F          +  +DF+KL+ 
Sbjct: 1114 DALAANQEMIYKKCSGQLDASNAYIMELPDALKDNAEKFADKF--LSNEMAKQDFLKLVK 1171

Query: 1739 HKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASV 1560
            HK+  SLAQPGEPVG+LAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEIL  AS 
Sbjct: 1172 HKFVLSLAQPGEPVGLLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASK 1231

Query: 1559 NIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYVGLRHHL-----YSRVYTL 1395
            +IKTP++TCPLL  K+ D+ AK LA  LKK+TV DI + I V +R           VY L
Sbjct: 1232 DIKTPVITCPLLVGKTEDD-AKRLADKLKKITVADIVKKISVKVRAFTSHDGQACTVYVL 1290

Query: 1394 AMNLYRP---ASNSGISLKDYKETLTIQFVRELEDAIHNQINAIKRMHGIQAFDQPSQSK 1224
             M LY+P    + + I+L+D++E L + FVRELED I N +  + +++GI+        K
Sbjct: 1291 TMELYKPKNYPTYTDITLEDWEEILEVVFVRELEDTIQNHLLLLSKINGIKNVASGLTQK 1350

Query: 1223 ASKETDEEVSG----MRGEENDDDGDVSXXXXXXXXXXXAQKRKRQSTDEVDYDDASEDE 1056
            AS ETD+E SG     RG+  DDD D +           A K+K+++TDE DY+D SE E
Sbjct: 1351 ASNETDQEGSGNVSQCRGD--DDDADDADGEEAEDLGMDAHKQKQRATDEKDYEDGSEGE 1408

Query: 1055 PNEGVLSTGFEQEKENGNCLDTEMDGDDVSRNSQDAEMDGD-DDASNLPSESQSP--XXX 885
             N+GV + GF  E +     ++E+D D      +D     + +++ +  SE+  P     
Sbjct: 1409 MNDGVSAAGFGSEIDQA---ESEIDDDQAETEIEDDRATNEIENSQDQASENLKPFTPKS 1465

Query: 884  XXXXXXXXXXXXXXXRQLSRKDADRSIEVXXXXXXXXXXXXXXXTDEDPHILLQQVALNV 705
                            +L +KD DR+I V                  +P+ILL Q+A +V
Sbjct: 1466 SKKKSKSKTKRKKARAKLVKKDTDRAIYVAARGMHFEAHFKFI---NEPNILLAQIARHV 1522

Query: 704  AKKVYIKSAGDIEHCQKIDCSNGQVLCH-------SNVSAEEKKRNSALLTAGVDFKAFW 546
            AKKVYI+S+G I+ CQ  +C   QV+ +        ++  EEK++  AL T GVDF AFW
Sbjct: 1523 AKKVYIQSSGKIDQCQVTNCKESQVIYYGKDPKKREDIKPEEKEKVQALHTTGVDFHAFW 1582

Query: 545  EMQENLDVNCIYSNNIHSMLKTYGVEAARESIIREVSHVFNSYGITVDIRHLTLIADFMT 366
            ++Q+ +DV  IYSNNI +ML+TYGVEAARE+IIRE+ HVF SYGI+V+ RHL+LIADFMT
Sbjct: 1583 QLQDFIDVRYIYSNNIQAMLETYGVEAARETIIREIKHVFGSYGISVNTRHLSLIADFMT 1642

Query: 365  HSGGYNPMSRSGGIAESVSPFSKITFETASKFIVEAALYGLTDDLESPSARVCLGLPVKV 186
            HSGGY PMSR GGIAESVSPFSK+TFE ASKFIVEAA YG  D L++PSAR+CLGLPVK+
Sbjct: 1643 HSGGYRPMSRLGGIAESVSPFSKMTFEIASKFIVEAASYGQVDKLDTPSARICLGLPVKM 1702

Query: 185  GTGCFDVMQKVDI 147
            GTG FD+MQK+++
Sbjct: 1703 GTGSFDLMQKLEV 1715


>ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
            lycopersicum]
          Length = 1677

 Score = 1705 bits (4415), Expect = 0.0
 Identities = 932/1725 (54%), Positives = 1170/1725 (67%), Gaps = 45/1725 (2%)
 Frame = -3

Query: 5186 EGATESIEAVRFGFFTDEEVRKHSFVQSTSADLLHGV-VPAXXXXXXXXXXXXXDRAPCK 5010
            +GA+E++EAV F F TDEEVR+HS V+ TS +LL G+ +P                + CK
Sbjct: 3    QGASETVEAVHFSFMTDEEVRRHSVVKVTSPNLLDGLQLPVPNGLYDPAMGPLDHYSQCK 62

Query: 5009 SCGQSGRCPGHCGHVALILPVYNPLLFNMLYAVLQRTCFFCHHFRAIRSKVENCISQLEL 4830
             C QS  C GHCGH+ L+ PVYNPLLFNML+ +LQRTCF+C HFRA R++VE C+S+LEL
Sbjct: 63   FCSQSN-CSGHCGHIELVSPVYNPLLFNMLHNLLQRTCFYCFHFRASRAEVEKCVSELEL 121

Query: 4829 IMKGNVIGAKNLDSLYLEGHSNQEDSDGSHVSSTVS-LGAQYHSLEHSKQQKWTSLQLTE 4653
            I KG+V+GAK +D+L  +  +++E+S+GSH+S T+  L  + H  E++K+  W + Q TE
Sbjct: 122  IAKGDVVGAKMIDALSPDNSTDREESEGSHMSCTMDDLNVRDHC-EYNKRPSWDNFQFTE 180

Query: 4652 AMSILDNFLKPKHVDCKNCGAKNPKITKPTFGWFKTSMPDAHARANRIK-GCKLKGSFVG 4476
            AM+++D  LK K   C NC AKNPKI KP+FG F   + +   R N I  G +      G
Sbjct: 181  AMAVIDRILKTKTEKCSNCKAKNPKIRKPSFGRFHMDISNKQIRENYINSGRRFNLHDTG 240

Query: 4475 EIEEDPSSDIENADNTSPWGNGSDTSEITPINETKRKKNKRGQAHP-----ELLKESFSG 4311
              EE+PS ++ NA  T P G    +  +T  +  +  K ++ Q        E  K+SFS 
Sbjct: 241  GSEENPSPEVVNA--TEPLGEAETSLCVTSTDGVENSKGRKRQGGDQSDVVEQQKDSFSV 298

Query: 4310 SLLPSEVRALLKLLWENEFELCSFICDIQRDSSDVLKDNAGYSMFFLDTILVPPIKFRPP 4131
            + LPS+VR++++ LWENE  LC+F CDIQ    +     AG SMFFLD+ILVPP+KFRPP
Sbjct: 299  AHLPSQVRSIIEHLWENEAPLCTFFCDIQSQHRNTSGKVAGPSMFFLDSILVPPVKFRPP 358

Query: 4130 SKGGDSVMEHPQTVLLGKVIEANMRLGNAYESKSGHSKTVVDRWIALQQSVNVSFDSKTM 3951
            +KGGDS+MEHP TVLLGKVI+AN+ LGNA+ +++G SK ++ R + LQQSVNV FDSKT 
Sbjct: 359  AKGGDSIMEHPHTVLLGKVIQANIALGNAHINRAGRSK-IISRLMDLQQSVNVLFDSKTA 417

Query: 3950 -GQGQRVGASGICQLLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALR 3774
             G GQ+   SGICQ+LEKK+GIFRQKMMGKRVNFACRSVISPDPYL+VNEIGIPPYFA R
Sbjct: 418  SGPGQKDVGSGICQMLEKKEGIFRQKMMGKRVNFACRSVISPDPYLSVNEIGIPPYFASR 477

Query: 3773 LTYPERVTPWNIGKLRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXXXXRKLPSSR 3594
            LTYPER+TPWN  K+RDA+ING E HPGA  +AD+ +   L             KLPSSR
Sbjct: 478  LTYPERLTPWNAVKMRDAVINGPENHPGAISFADRIATVKLPSNKKMRVAISR-KLPSSR 536

Query: 3593 GVVTQPGKSGDIDFEGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHY 3414
            G VTQ G++ + +FEGK+V RHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHY
Sbjct: 537  GAVTQSGRNNEYEFEGKVVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHY 596

Query: 3413 ANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDHIISAV 3234
            ANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNAN QY+VP++G+ +R LIQDHI+ AV
Sbjct: 597  ANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVGAV 656

Query: 3233 LLTKKDTFLSRDEYSQLLYXXXXXXXXXXXXSCKPGQKVCLVS-EDEMQTLQPAILKPEP 3057
            +LT K+TFLS  E++QLLY            S     KV +V  E  +QT+ PA+ KP+P
Sbjct: 657  ILTMKNTFLSLHEFNQLLYGSGVFAAGPAPTSGNHSNKVSIVDFEGVVQTVLPAVWKPKP 716

Query: 3056 LWTGKQVITAVLNHITKGHPPFTVEKEGKIPREYFGSNTGEDDLSVERKTSXXXXXXXXX 2877
            LWTGKQVITA+LNH+T G PP TV+ +GKIP  YF S +   +     +           
Sbjct: 717  LWTGKQVITALLNHLTNGCPPCTVKNKGKIPYAYFLSESRLVEYQSREEQEDRTAENE-- 774

Query: 2876 XXXEILYVSKNDLVRGVIDKAQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHG 2697
                   + KN+LVRGVIDKAQFG +GLVHT+QELYG   AGILLSA SRLFT+FLQ+HG
Sbjct: 775  -----FLIWKNELVRGVIDKAQFGKFGLVHTIQELYGSNKAGILLSALSRLFTIFLQLHG 829

Query: 2696 FTCGVDDLLILKYRDIERKQELEKCQDFGXXXXXXXXXXXXKRKDIRNVYSKFLGIKYDE 2517
            FTCG+DDL+IL + DI RK+ELE   D G                    +  F+  K  E
Sbjct: 830  FTCGIDDLVILPHYDIRRKEELEG-DDVG-----------------EEAHCDFVKFKRGE 871

Query: 2516 IDPKELPNEIEYGICRYGEVGTTSLDNEMRKHLSNASTEVNKDLFVKGLLKPFPKNCFSL 2337
            I P EL  EIE  I    EV T +LD +M+  L+N  ++ NK+L +KGLLKPFP+NC +L
Sbjct: 872  IGPLELQLEIEKAISSNKEVATAALDMKMKNKLANKGSQFNKELLLKGLLKPFPRNCIAL 931

Query: 2336 MTTTGAKGGMVNFQQVSSLLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFL 2157
            MT TGAKG  VNFQQ+SS LGQQ+LEGKRVPRMVSGKTLP F  WD + RAGG++SD FL
Sbjct: 932  MTITGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPCFPAWDCASRAGGYVSDRFL 991

Query: 2156 TGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQ 1977
            +GL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LKVCYD+TVRDADGSIIQ
Sbjct: 992  SGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQ 1051

Query: 1976 FSYGEDGVDVHQTSFISKFKALEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREFIK 1797
            F YGEDGVDVH+TSF+  FKAL+ N + + +K L H  K NSYIE LP  L +K + F +
Sbjct: 1052 FYYGEDGVDVHRTSFLKNFKALKNNQETICQK-LRHGCKLNSYIEKLPDGLGEKVKHFWE 1110

Query: 1796 ----------GVPEKKKHI------DDEDFMKLMNHKYFSSLAQPGEPVGVLAAQSVGEP 1665
                      G+  KK+ +      ++ DF++L+  KYFSSLA  GEPVGVLA QSVGEP
Sbjct: 1111 SKTKKLEKKLGMLVKKEEMVKQLKEEEADFLELVGQKYFSSLADSGEPVGVLAGQSVGEP 1170

Query: 1664 STQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASVNIKTPIMTCPLLKEKSTDEIAKGLA 1485
            STQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAS  IKTPIMTCP L  KS ++ A+ L 
Sbjct: 1171 STQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASEAIKTPIMTCPFLGWKSKND-AQSLL 1229

Query: 1484 QTLKKVTVGDITENIYV-----GLRHHLYSRVYTLAMNLYRPASNSGISLKDYKETLTIQ 1320
              +KK+TV D+ E++ V      + +H  S++Y L + L +   +  +S +D + TL   
Sbjct: 1230 AKVKKITVADMIESMEVKLLPLSIYNHQVSQLYKLTVKLKK---HDFVSSEDCEYTLKFV 1286

Query: 1319 FVRELEDAIHNQINAIKRMHGIQAFDQPSQSKASKETDEEVSGMRGEEND-DDGDVSXXX 1143
            F+RELEDAI + +  + +++GIQ F   S+S  S ET+E  S  R EE   DD D     
Sbjct: 1287 FLRELEDAIESHLALLSKINGIQNFKTSSESVDSDETEENASSTRREEEMLDDDDDDEDE 1346

Query: 1142 XXXXXXXXAQKRKRQSTDEVDYDDASEDEPNEGVLSTGFEQEK-------ENGNCLDTEM 984
                    AQKRK+Q+TDE+DYDD  ++   E   +   E EK       +NG   D E 
Sbjct: 1347 RTEDLSSDAQKRKQQTTDEMDYDDDEDEAEAEAEATAEIEDEKSEQTDEIDNG---DEEE 1403

Query: 983  DGDDVSRNSQDAEMDGDDDASNLPSESQSPXXXXXXXXXXXXXXXXXXRQLSRKDADRSI 804
            +GD  +          ++D SN  +                        + S+KD+DR +
Sbjct: 1404 NGDRGNEEHTSKLQSTEEDISNTKTSKSK--------TKTTVKQKKKKERRSKKDSDRCV 1455

Query: 803  EVXXXXXXXXXXXXXXXTDEDPHILLQQVALNVAKKVYIKSAGDIEHCQ--KIDCSNGQV 630
             V                  +PHILL QVA   AKKVY+K++G I+ C+  K + +   V
Sbjct: 1456 FVDVEGLHFEVHFRFV---NEPHILLAQVAQKTAKKVYVKNSGKIDQCRMVKYEVTENTV 1512

Query: 629  LCHSNVSAEEKKRNS----ALLTAGVDFKAFWEMQENLDVNCIYSNNIHSMLKTYGVEAA 462
            +   N + ++++ +     AL  AGVDF  FWEMQ++LDV  IY+NNI +ML TYGVEAA
Sbjct: 1513 MWDENQTKQQRQDSDSAYWALKAAGVDFGTFWEMQDDLDVTRIYTNNIRAMLNTYGVEAA 1572

Query: 461  RESIIREVSHVFNSYGITVDIRHLTLIADFMTHSGGYNPMSRSGGIAESVSPFSKITFET 282
            R SI+REV  VF  YG+ +D RHL+LIADFMTH+GGY PMSR G I+ES+SPF K++FET
Sbjct: 1573 RASILREVKTVFGIYGVEIDFRHLSLIADFMTHTGGYQPMSRHGSISESLSPFLKMSFET 1632

Query: 281  ASKFIVEAALYGLTDDLESPSARVCLGLPVKVGTGCFDVMQKVDI 147
            ASKFIVEAA +GLTD+LE+PS+R+CLGLPVK+GTGCFD+MQ++DI
Sbjct: 1633 ASKFIVEAAAHGLTDNLETPSSRICLGLPVKMGTGCFDIMQELDI 1677


>ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
            tuberosum]
          Length = 1675

 Score = 1697 bits (4394), Expect = 0.0
 Identities = 934/1726 (54%), Positives = 1170/1726 (67%), Gaps = 46/1726 (2%)
 Frame = -3

Query: 5186 EGATESIEAVRFGFFTDEEVRKHSFVQSTSADLLHGV-VPAXXXXXXXXXXXXXDRAPCK 5010
            +GA+E++EAV F F TDEEVR+HS V+ TS +LL G+ +P                + CK
Sbjct: 3    QGASEAVEAVHFSFMTDEEVRRHSVVKVTSPNLLDGLQLPVPNGLYDPAMGPLDHYSQCK 62

Query: 5009 SCGQSGRCPGHCGHVALILPVYNPLLFNMLYAVLQRTCFFCHHFRAIRSKVENCISQLEL 4830
             C QS  C GHCGH+ L+ PVYNPLLFNML+ +LQRTCF+C HFRA R++VE C+S+LEL
Sbjct: 63   FCCQSN-CSGHCGHIELVSPVYNPLLFNMLHNLLQRTCFYCFHFRASRAEVEKCVSELEL 121

Query: 4829 IMKGNVIGAKNLDSLYLEGHSNQEDSDGSHVSSTVS-LGAQYHSLEHSKQQKWTSLQLTE 4653
            I KG+V+GAK +D+L  +  +++E+S+GSH+S  +  L  Q H  E++K+  W + Q TE
Sbjct: 122  IAKGDVVGAKMIDALSPDNSTDREESEGSHMSCAMDDLNMQDHR-EYNKRPSWDNFQFTE 180

Query: 4652 AMSILDNFLKPKHVDCKNCGAKNPKITKPTFGWFKTSMPDAHARANRIK-GCKLKGSFVG 4476
            AM+++D  LK K   C NC AKNPKI KP+FG F   + +   R N I  G +      G
Sbjct: 181  AMAVIDRILKTKTEKCSNCKAKNPKIRKPSFGRFHMDISNKQIRENYINSGRRFNLHDTG 240

Query: 4475 EIEEDPSSDIENADNTSPWGNGSDTSEITPINETKRKKNKRGQAHP-----ELLKESFSG 4311
              EE+PS ++ NA  T P G    +  +T  +  +  K ++ Q        E  K+SFS 
Sbjct: 241  GSEENPSPEVVNA--TEPLGEAETSLCVTSTDGVENSKARKRQGGDQSDVVEQQKDSFSV 298

Query: 4310 SLLPSEVRALLKLLWENEFELCSFICDIQRDSSDVLKDNAGYSMFFLDTILVPPIKFRPP 4131
            + LPS+VR++++ LWENE  LC+F CDIQ    +     AG SMFFLD+ILVPPIKFRPP
Sbjct: 299  AHLPSQVRSIIEHLWENEAPLCTFFCDIQSQHHNTSGKVAGPSMFFLDSILVPPIKFRPP 358

Query: 4130 SKGGDSVMEHPQTVLLGKVIEANMRLGNAYESKSGHSKTVVDRWIALQQSVNVSFDSKTM 3951
            +KGGDS+MEHP TVLLGKV++AN+ LGNA+ +++G SK ++ R + LQQSVNV FDSKT 
Sbjct: 359  AKGGDSIMEHPHTVLLGKVVQANIALGNAHINRAGRSK-IISRLMDLQQSVNVLFDSKTA 417

Query: 3950 -GQGQRVGASGICQLLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALR 3774
             G GQ+   SGICQ+LEKK+GIFRQKMMGKRVNFACRSVISPDPYL+VNEIGIPPYFALR
Sbjct: 418  SGPGQKDVGSGICQMLEKKEGIFRQKMMGKRVNFACRSVISPDPYLSVNEIGIPPYFALR 477

Query: 3773 LTYPERVTPWNIGKLRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXXXXRKLPSSR 3594
            LTYPER+TPWN  K+RDA+ING E HPGA  +AD+ +   L             KLPSSR
Sbjct: 478  LTYPERLTPWNAVKMRDAVINGPENHPGAVSFADRIATVKLPSNKKMRVAISR-KLPSSR 536

Query: 3593 GVVTQPGKSGDIDFEGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHY 3414
            G VTQ G++ + +FEGK+V RHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHY
Sbjct: 537  GAVTQSGRNNEYEFEGKVVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHY 596

Query: 3413 ANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDHIISAV 3234
            ANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNAN QY+VP++G+ +R LIQDHI+ AV
Sbjct: 597  ANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVGAV 656

Query: 3233 LLTKKDTFLSRDEYSQLLYXXXXXXXXXXXXSCKPGQKVCLVS-EDEMQTLQPAILKPEP 3057
            +LT K+TFL+  E++QLLY            S     KV +V  E  +QT+ PA+ KP+P
Sbjct: 657  ILTMKNTFLTLHEFNQLLYGSGVFAAGPAPTSGNHSNKVSVVDFEGVVQTVLPAVWKPKP 716

Query: 3056 LWTGKQVITAVLNHITKGHPPFTVEKEGKIPREYFGSNTGEDDLSVERKTSXXXXXXXXX 2877
            LWTGKQVITA+LNH+TKG  P TV+ +GKIP  YF S +   +     +           
Sbjct: 717  LWTGKQVITALLNHLTKGCAPCTVKNKGKIPYPYFLSESRLVEYQSREEQEDRTAENE-- 774

Query: 2876 XXXEILYVSKNDLVRGVIDKAQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHG 2697
                   + KN+LVRGVIDKAQFG +GLVHT+QELYG   AGILLSA SRLFT+FLQ+HG
Sbjct: 775  -----FLIWKNELVRGVIDKAQFGKFGLVHTIQELYGSNKAGILLSALSRLFTIFLQLHG 829

Query: 2696 FTCGVDDLLILKYRDIERKQELEKCQDFGXXXXXXXXXXXXKRKDIRNVYSKFLGIKYDE 2517
            FTCGVDDL+IL + DI RK+ELE   D G                    +  F+  K  E
Sbjct: 830  FTCGVDDLVILPHYDIRRKEELEG-DDVG-----------------EEAHCDFVKFKRGE 871

Query: 2516 IDPKELPNEIEYGICRYGEVGTTSLDNEMRKHLSNASTEVNKDLFVKGLLKPFPKNCFSL 2337
            I P EL  EIE  +    E  T +LD +M+  L+N  ++ NK+L +KGLLKPFP+NC +L
Sbjct: 872  IGPLELQLEIEKAMSSNKEAATAALDMKMKNKLANKGSQFNKELLLKGLLKPFPRNCIAL 931

Query: 2336 MTTTGAKGGMVNFQQVSSLLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFL 2157
            MT TGAKG  VNFQQ+SS LGQQ+LEGKRVPRMVSGKTLP F PWD + RAGG++SD FL
Sbjct: 932  MTITGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPCFPPWDCASRAGGYVSDRFL 991

Query: 2156 TGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQ 1977
            +GL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LKVCYD+TVRDADGSIIQ
Sbjct: 992  SGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQ 1051

Query: 1976 FSYGEDGVDVHQTSFISKFKALEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREFIK 1797
            F YGEDGVDVH+TSF+  FKAL+ N + + +K L H  K NSYIE LP  LE+K + F +
Sbjct: 1052 FYYGEDGVDVHRTSFLKNFKALKNNQETICQK-LRHGRKLNSYIEKLPDGLEEKVKHFWE 1110

Query: 1796 ----------GVPEKKKHI------DDEDFMKLMNHKYFSSLAQPGEPVGVLAAQSVGEP 1665
                      G   KK+ +      ++ DF++L+  KYFSSLA  GEPVGVLA QSVGEP
Sbjct: 1111 KRTKKLEKKLGKLVKKEEMVKQLKEEEADFLELVRQKYFSSLADSGEPVGVLAGQSVGEP 1170

Query: 1664 STQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASVNIKTPIMTCPLLKEKSTDEIAKGLA 1485
            STQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAS  IKTPI+TCP L  +S ++ A+ L 
Sbjct: 1171 STQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASEAIKTPILTCPFLGWQSKND-AQSLL 1229

Query: 1484 QTLKKVTVGDITENIYV-----GLRHHLYSRVYTLAMNLYRPASNSGISLKDYKETLTIQ 1320
              +KK+TV D+ E++ V      + +H  S++Y L + L +   +  +S +D + TL   
Sbjct: 1230 AKVKKITVADMIESMEVKLLPLSIYNHQVSQLYKLTVKLKK---HDFVSSEDCEYTLKFV 1286

Query: 1319 FVRELEDAIHNQINAIKRMHGIQAFDQPSQSKASKETDEEVSGMRGEE---NDDDGDVSX 1149
            F+RELEDAI + +  + +++GIQ F   S+S  S ET+E  S  R EE   +D+D D   
Sbjct: 1287 FLRELEDAIESHLALLSKINGIQNFKTSSESVDSDETEENASSTRHEEEMLDDEDED--- 1343

Query: 1148 XXXXXXXXXXAQKRKRQSTDEVDYDDASEDEPNEGVLSTGFEQEKENGNCLDTEMDGD-- 975
                      AQKRK+Q+TDE+DYD    D+ NE    T  E E E     D   +GD  
Sbjct: 1344 -ERTEDLSSDAQKRKQQTTDEMDYD----DDENEDEAETTAEIEDEKSEQTDEIDNGDEE 1398

Query: 974  DVSRNSQDAEM----DGDDDASNLPSESQSPXXXXXXXXXXXXXXXXXXRQLSRKDADRS 807
            ++     + +M      +DD SN  S                        + S+KD+DR 
Sbjct: 1399 EIGNRGNEEQMSKLQSTEDDISNTKSSKSK------TKTKTTVKQNKKKERRSKKDSDRC 1452

Query: 806  IEVXXXXXXXXXXXXXXXTDEDPHILLQQVALNVAKKVYIKSAGDIEHCQ--KIDCSNGQ 633
            + V                  +PHILL QVA   AKKVYIK++G I+ C+  K + +   
Sbjct: 1453 VFVDVEGLHFEVHFRFV---NEPHILLAQVAQKTAKKVYIKNSGKIDQCRMVKYEVTENT 1509

Query: 632  VLCHSNVSAEEKKRNS----ALLTAGVDFKAFWEMQENLDVNCIYSNNIHSMLKTYGVEA 465
            V+     + ++ + +     AL  AGVDF  FWEMQ++LDV  IY+NNI +ML TYGVEA
Sbjct: 1510 VMWDEYQTKQQSQDSDSAYWALKAAGVDFGTFWEMQDDLDVTRIYTNNIRAMLNTYGVEA 1569

Query: 464  ARESIIREVSHVFNSYGITVDIRHLTLIADFMTHSGGYNPMSRSGGIAESVSPFSKITFE 285
            AR SI+REV  VF  YG+ +D RHL+LIADFMTH+GGY PMSR G I+ES+SPF K++FE
Sbjct: 1570 ARASILREVKTVFGIYGVEIDFRHLSLIADFMTHTGGYQPMSRHGSISESLSPFLKMSFE 1629

Query: 284  TASKFIVEAALYGLTDDLESPSARVCLGLPVKVGTGCFDVMQKVDI 147
            TASKFIVEAA +GLTD+LE+PS+R+CLGLPVK+GTGCFD+MQK+DI
Sbjct: 1630 TASKFIVEAAAHGLTDNLETPSSRICLGLPVKMGTGCFDIMQKLDI 1675


>ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Cucumis
            sativus]
          Length = 1650

 Score = 1695 bits (4390), Expect = 0.0
 Identities = 942/1713 (54%), Positives = 1162/1713 (67%), Gaps = 28/1713 (1%)
 Frame = -3

Query: 5201 MSYRTEGATESIEAVRFGFFTDEEVRKHSFVQSTSADLLHGVV-PAXXXXXXXXXXXXXD 5025
            M+  TEGA+ES++ V F F T+EEVRK S V+ T+  LL G+  P              +
Sbjct: 1    MAQTTEGASESVKVVTFSFMTNEEVRKQSVVKVTAPILLDGMGRPVSGGLYDPAMGSLDE 60

Query: 5024 RAPCKSCGQSG-RCPGHCGHVALILPVYNPLLFNMLYAVLQRTCFFCHHFRAIRSKVENC 4848
               CKSCGQ    CPGHCGH+ L+ PVYNPLLF +L+  L+ TCF CHHFRA  S VENC
Sbjct: 61   TTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTCFSCHHFRAGESMVENC 120

Query: 4847 ISQLELIMKGNVIGAKNLDSLYLEGHSNQEDSDGSHVSSTVSLGAQYHSLEHSKQQKWTS 4668
             + LELI+ G +  AK L+  ++   S  + S   +           +  ++ + + WTS
Sbjct: 121  KTLLELILDGEIAKAKELEEEWMNSKSRTKSSHSMYT----------YERKNGQPETWTS 170

Query: 4667 LQLTEAMSILDNFLKPKHVDCKNCGAKNPKITKPTFGWFKTS-MPDAHARANRIKGCKLK 4491
            LQ +EA+S++  FLKPK  +CK CGAK+PKITKPTFGWF    +     RAN I+  K  
Sbjct: 171  LQFSEAISVVTKFLKPKQSNCKYCGAKSPKITKPTFGWFHMKGLAGVQKRANAIRRSKPV 230

Query: 4490 GSFVGEIEEDPSSDIENADNTSPWGNGSDTSEITPINETKRKKNKRGQAHPELLKESFSG 4311
                G    +  S +E  + T+      D  +++P  E   +KN              SG
Sbjct: 231  SVSSGA---EGVSSLE--EETTTEATVEDFEDVSP--EVFMQKNFS------------SG 271

Query: 4310 SLLPSEVRALLKLLWENEFELCSFICDIQRDSSDVLKDNAGYSMFFLDTILVPPIKFRPP 4131
             LLPSEV+ +LK LW+NE  LCSFI DI +       + AG+SMFFL+++LVPPIKFRPP
Sbjct: 272  HLLPSEVKDILKRLWKNEALLCSFISDISQQGHG---NKAGHSMFFLESVLVPPIKFRPP 328

Query: 4130 SKGGDSVMEHPQTVLLGKVIEANMRLGNAYESKSGHSKTVVDRWIALQQSVNVSFDSKTM 3951
            +KGGDSVMEHPQTVLL KV+++N+ LGN + +KS HSK +V  W+ LQQS+N+ FDSK+ 
Sbjct: 329  AKGGDSVMEHPQTVLLNKVLQSNISLGNGHANKSEHSK-IVRLWMDLQQSINILFDSKSA 387

Query: 3950 -GQGQRVGASGICQLLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALR 3774
             G G+   + GICQLLEKK+G+FRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALR
Sbjct: 388  AGPGKNDASLGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALR 447

Query: 3773 LTYPERVTPWNIGKLRDAIINGSEIHPGATHYADK-SSVDLLXXXXXXXXXXXXRKLPSS 3597
            LTYPERVT WN+ KLR+AIING E HPGATHY DK ++V L             RKLPSS
Sbjct: 448  LTYPERVTAWNVQKLRNAIINGPETHPGATHYIDKLATVKLNLKPSRKSRISISRKLPSS 507

Query: 3596 RGVVTQPGKSGDIDFEGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMH 3417
            RGVV   G   D +FEGKIV+RHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKT+RMH
Sbjct: 508  RGVVVDQG-CDDYEFEGKIVNRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMH 566

Query: 3416 YANCS-TYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDHIIS 3240
            YANCS TYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYV P+ GEPIRALIQDHIIS
Sbjct: 567  YANCSITYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVKPTSGEPIRALIQDHIIS 626

Query: 3239 AVLLTKKDTFLSRDEYSQLLYXXXXXXXXXXXXSCKPGQKVCLVSED-EMQTLQPAILKP 3063
            AVLLTKKDTFL+ DE+SQLLY            S KPGQK+  +  D EM  + PA+ KP
Sbjct: 627  AVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSEKPGQKIFTLDFDAEMLPVLPAVWKP 686

Query: 3062 EPLWTGKQVITAVLNHITKGHPPFTVEKEGKIPREYFGSNTGEDDLSVERKTSXXXXXXX 2883
            EPLWTGKQV+TA+L+HIT+G PPF VEK+ KIPR +F      ++ S +++ +       
Sbjct: 687  EPLWTGKQVVTALLDHITQGSPPFFVEKDVKIPRGFFKCRDMGNNSSKKKEHTKVDKLKA 746

Query: 2882 XXXXXEILYVSKNDLVRGVIDKAQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQM 2703
                 + L + KN+LVRGVIDKAQFG YGLVHTVQELYG  TAG+LLS  SRLFTVFLQ 
Sbjct: 747  ARLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGLLLSVMSRLFTVFLQT 806

Query: 2702 HGFTCGVDDLLILKYRDIERKQELEKCQDFGXXXXXXXXXXXXKRKDIRNVYSKFLGIKY 2523
            HGFTCGVDDLL+++  D ER+++L+ C+  G                   V+  FL +K 
Sbjct: 807  HGFTCGVDDLLLIECMDKEREKQLQICEKIG-----------------EQVHLGFLKVKD 849

Query: 2522 DE-IDPKELPNEIEYGICRYGEVGTTSLDNEMRKHLSN--ASTEVNKDLFVKGLLKPFPK 2352
             E +DP  L   IE  I   GE   TSLD +M   L+    +++V KDL  +GLLKP  K
Sbjct: 850  GEKLDPMTLQLNIEKTISYNGEAALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVK 909

Query: 2351 NCFSLMTTTGAKGGMVNFQQVSSLLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFI 2172
            NC SLMTT+GAKGG  NFQQ+SS LGQQ LEGKRVPRMVSGKTLP F PWDW+ RAGGFI
Sbjct: 910  NCISLMTTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFI 969

Query: 2171 SDNFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDAD 1992
             D FLTGL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LK+CYDHTVRDAD
Sbjct: 970  VDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKICYDHTVRDAD 1029

Query: 1991 GSIIQFSYGEDGVDVHQTSFISKFKALEENHQILREKFLHHLDKSNSYIEHLPPKLEKKA 1812
            GS+IQF YGEDGVDVH+T+FI+KF+AL  N  +L E   H L K N +I  LP  L +K 
Sbjct: 1030 GSVIQFQYGEDGVDVHKTAFITKFEALAANQDMLYENSHHQLGKYNVFINELPSALREKG 1089

Query: 1811 REFIKGVPEKKK---HIDDEDFMKLMNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNT 1641
             EFI     K K    +  EDF++L+ +KY SSLAQPGEPVGVLAAQS+GEPSTQMTLNT
Sbjct: 1090 -EFIYNSLSKDKVPGLVLKEDFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNT 1148

Query: 1640 FHLAGRGEMNVTLGIPRLQEILMTASVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTV 1461
            FH  GRGEMNVTLGI RLQEILMTAS +IKTPIMTCP LKE  + ++AKGLA  LKK+TV
Sbjct: 1149 FHHVGRGEMNVTLGILRLQEILMTASQDIKTPIMTCP-LKEGYSMDVAKGLANKLKKITV 1207

Query: 1460 GDITENIYVGL-----RHHLYSRVYTLAMNLY---RPASNSGISLKDYKETLTIQFVREL 1305
             DI E++ V +     R      +Y L ++ Y     A +  IS +D + TL   F+ EL
Sbjct: 1208 ADIIESMNVTVVPFSQRKREICSIYKLRIDFYPLENNAQHGHISPEDLENTLETVFLEEL 1267

Query: 1304 EDAIHNQINAIKRMHGIQAFDQPSQSKASKETDEEVSGMRGEENDDDGDVSXXXXXXXXX 1125
            E  I  ++  + +++GI+ F   SQSK S E DE  S  + E +DDD + +         
Sbjct: 1268 EGLIEREMVLLSKINGIKNFVPDSQSKGSSEGDEVSSSRQKENDDDDDEGNDLDVAEDLG 1327

Query: 1124 XXAQKRKRQSTDEVDYDDASEDEPNEGVLSTGFEQEKENGNCLDTEMDGDDVSRNSQDAE 945
               +K+K Q+ DE+DY+D SED+ N    STGFE E + G+  + E+  +D+    +D+ 
Sbjct: 1328 SDMKKQKLQANDEMDYEDDSEDDLNAKESSTGFESEVDQGD--EAEITNNDMIEIVKDSA 1385

Query: 944  MDGDDDASNLPSESQSPXXXXXXXXXXXXXXXXXXRQLSRKDADRSIEVXXXXXXXXXXX 765
             +   +  ++ S+S S                    +L RK+ DRSI V           
Sbjct: 1386 SENQPEIVDV-SKSMS----KEKTTETSKEKKKVKSELVRKETDRSIFV---EAKENHFE 1437

Query: 764  XXXXTDEDPHILLQQVALNVAKKVYIKSAGDIEHCQKIDCSNGQVLCH-------SNVSA 606
                   +PH LL Q+    A+KV I+ +G I  CQ+I C  GQV+ H        N+  
Sbjct: 1438 VHFKFTNEPHTLLSQIVQRAAQKVSIQRSGKIIQCQQITCKEGQVIYHGNNLKERKNLKP 1497

Query: 605  EEKKRNSALLTAGVDFKAFWEMQENLDVNCIYSNNIHSMLKTYGVEAARESIIREVSHVF 426
            EEK++  AL T+GVDFK  WEMQ+ LDV  IYSN+IH+ML+TYGVEAAR +IIRE+ ++F
Sbjct: 1498 EEKEKIPALQTSGVDFKTLWEMQDELDVRYIYSNDIHAMLQTYGVEAARATIIREIQNIF 1557

Query: 425  NSYGITVDIRHLTLIADFMTHSGGYNPMSRSGGIAESVSPFSKITFETASKFIVEAALYG 246
             SYGI+V+IRHL+L+AD+MTHSGGY PMSR GGI++S+SPFS++TFETA KFIV+AAL+G
Sbjct: 1558 TSYGISVNIRHLSLVADYMTHSGGYRPMSRLGGISDSISPFSRMTFETAGKFIVQAALHG 1617

Query: 245  LTDDLESPSARVCLGLPVKVGTGCFDVMQKVDI 147
              D+LE+PS+R+CLGLPVK+GTG FD+MQK+++
Sbjct: 1618 EVDNLETPSSRICLGLPVKMGTGSFDLMQKIEV 1650


>ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
            RPA1-like [Cucumis sativus]
          Length = 1652

 Score = 1692 bits (4383), Expect = 0.0
 Identities = 944/1707 (55%), Positives = 1160/1707 (67%), Gaps = 28/1707 (1%)
 Frame = -3

Query: 5183 GATESIEAVRFGFFTDEEVRKHSFVQSTSADLLHGVV-PAXXXXXXXXXXXXXDRAPCKS 5007
            GA+ES++ V F F T+EEVRK S V+ T+  LL G+  P              +   CKS
Sbjct: 13   GASESVKVVTFSFMTNEEVRKQSVVKVTAPILLDGMGRPVSGGLYDPAMGSLDETTLCKS 72

Query: 5006 CGQSG-RCPGHCGHVALILPVYNPLLFNMLYAVLQRTCFFCHHFRAIRSKVENCISQLEL 4830
            CGQ    CPGHCGH+ L+ PVYNPLLF +L+  L+ TCF CHHFRA  S VENC + LEL
Sbjct: 73   CGQRPFYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTCFSCHHFRAGESMVENCKTLLEL 132

Query: 4829 IMKGNVIGAKNLDSLYLEGHSNQEDSDGSHVSSTVSLGAQYHSLEHSKQQKWTSLQLTEA 4650
            I+ G +  AK L+  ++   S  + S   +           +  ++ + + WTSLQ +EA
Sbjct: 133  ILDGEIAKAKELEEEWMNSKSRTKSSHSMYT----------YERKNGQPETWTSLQFSEA 182

Query: 4649 MSILDNFLKPKHVDCKNCGAKNPKITKPTFGWFKTS-MPDAHARANRIKGCKLKGSFVGE 4473
            +S++  FLKPK  +CK CGAK+PKITKPTFGWF    +     RAN I+  K      G 
Sbjct: 183  ISVVTKFLKPKQSNCKYCGAKSPKITKPTFGWFHMKGLAGVQKRANAIRRSKPVSVSSGA 242

Query: 4472 IEEDPSSDIENADNTSPWGNGSDTSEITPINETKRKKNKRGQAHPELLKESFSGSLLPSE 4293
               +  S +E  + T+      D  +++P  E   +KN              SG LLPSE
Sbjct: 243  ---EGVSSLE--EETTTEATVEDFEDVSP--EVFMQKNFS------------SGHLLPSE 283

Query: 4292 VRALLKLLWENEFELCSFICDIQRDSSDVLKDNAGYSMFFLDTILVPPIKFRPPSKGGDS 4113
            V+ +LK LW+NE  LCSFI DI +       + AG+SMFFL+++LVPPIKFRPP+KGGDS
Sbjct: 284  VKDILKRLWKNEALLCSFISDISQQGHG---NKAGHSMFFLESVLVPPIKFRPPAKGGDS 340

Query: 4112 VMEHPQTVLLGKVIEANMRLGNAYESKSGHSKTVVDRWIALQQSVNVSFDSKTM-GQGQR 3936
            VMEHPQTVLL KV+++N+ LGN + +KS HSK +V  W+ LQQS+N+ FDSK+  G G+ 
Sbjct: 341  VMEHPQTVLLNKVLQSNISLGNGHANKSEHSK-IVRLWMDLQQSINILFDSKSAAGPGKN 399

Query: 3935 VGASGICQLLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPER 3756
              + GICQLLEKK+G+FRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPER
Sbjct: 400  DASLGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPER 459

Query: 3755 VTPWNIGKLRDAIINGSEIHPGATHYADK-SSVDLLXXXXXXXXXXXXRKLPSSRGVVTQ 3579
            VT WN+ KLR+AIING E HPGATHY DK ++V L             RKLPSSRGVV  
Sbjct: 460  VTAWNVQKLRNAIINGPETHPGATHYIDKLATVKLNLKPSRKSRISISRKLPSSRGVVVD 519

Query: 3578 PGKSGDIDFEGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCS- 3402
             G   D +FEGKIV+RHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKT+RMHYANCS 
Sbjct: 520  QG-CDDYEFEGKIVNRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSI 578

Query: 3401 TYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDHIISAVLLTK 3222
            TYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYV P+ GEPIRALIQDHIISAVLLTK
Sbjct: 579  TYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVKPTSGEPIRALIQDHIISAVLLTK 638

Query: 3221 KDTFLSRDEYSQLLYXXXXXXXXXXXXSCKPGQKVCLVSED-EMQTLQPAILKPEPLWTG 3045
            KDTFL+ DE+SQLLY            S KPGQK+  +  D EM  + PA+ KPEPLWTG
Sbjct: 639  KDTFLNFDEFSQLLYSSGISTSKACASSEKPGQKIFTLDFDAEMLPVLPAVWKPEPLWTG 698

Query: 3044 KQVITAVLNHITKGHPPFTVEKEGKIPREYFGSNTGEDDLSVERKTSXXXXXXXXXXXXE 2865
            KQV+TA+L+HIT+G PPF VEK+ KIPR +   + G    S +++ +            +
Sbjct: 699  KQVVTALLDHITQGSPPFFVEKDVKIPRGFLILDEGN---SKKKEHTKVDKLKAARLDDD 755

Query: 2864 ILYVSKNDLVRGVIDKAQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCG 2685
             L + KN+LVRGVIDKAQFG YGLVHTVQELYG  TAG+LLS  SRLFTVFLQ HGFTCG
Sbjct: 756  SLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGLLLSVMSRLFTVFLQTHGFTCG 815

Query: 2684 VDDLLILKYRDIERKQELEKCQDFGXXXXXXXXXXXXKRKDIRNVYSKFLGIKYDE-IDP 2508
            VDDLL+++  D ER+++L+ C+  G                   V+  FL +K  E +DP
Sbjct: 816  VDDLLLIECMDKEREKQLQICEKIG-----------------EQVHLGFLKVKDGEKLDP 858

Query: 2507 KELPNEIEYGICRYGEVGTTSLDNEMRKHLSN--ASTEVNKDLFVKGLLKPFPKNCFSLM 2334
              L   IE  I   GE   TSLD +M   L+    +++V KDL  +GLLKP  KNC SLM
Sbjct: 859  MTLQLNIEKTISYNGEAALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLM 918

Query: 2333 TTTGAKGGMVNFQQVSSLLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLT 2154
            TT+GAKGG  NFQQ+SS LGQQ LEGKRVPRMVSGKTLP F PWDW+ RAGGFI D FLT
Sbjct: 919  TTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLT 978

Query: 2153 GLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQF 1974
            GL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LK+CYDHTVRDADGS+IQF
Sbjct: 979  GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGSVIQF 1038

Query: 1973 SYGEDGVDVHQTSFISKFKALEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKG 1794
             YGEDGVDVH+T+FI+KF+AL  N  +L E   H L K N +I  LP  L +K  EFI  
Sbjct: 1039 QYGEDGVDVHKTAFITKFEALAANQDMLYENSHHQLGKYNVFINELPSALREKG-EFIYN 1097

Query: 1793 VPEKKK---HIDDEDFMKLMNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGR 1623
               K K    +  EDF++L+ +KY SSLAQPGEPVGVLAAQS+GEPSTQMTLNTFH AGR
Sbjct: 1098 SLSKDKVPGLVLKEDFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGR 1157

Query: 1622 GEMNVTLGIPRLQEILMTASVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITEN 1443
            GEMNVTLGIPRLQEILMTAS +IKTPIMTCP LKE  + ++AKGLA  LKK+TV DI E+
Sbjct: 1158 GEMNVTLGIPRLQEILMTASQDIKTPIMTCP-LKEGYSMDVAKGLANKLKKITVADIIES 1216

Query: 1442 IYVGL-----RHHLYSRVYTLAMNLY---RPASNSGISLKDYKETLTIQFVRELEDAIHN 1287
            + V +     R      +Y L ++ Y     A +  IS +D + TL   F+ ELE  I  
Sbjct: 1217 MNVTVVPFSQRKREICSIYKLRIDFYPLENNAQHGHISPEDLENTLETVFLEELEGLIER 1276

Query: 1286 QINAIKRMHGIQAFDQPSQSKASKETDEEVSGMRGEENDDDGDVSXXXXXXXXXXXAQKR 1107
            ++  + +++GI+ F   SQSK S E D EVS  R EE DDD + +            +K+
Sbjct: 1277 EMVLLSKINGIKXFVPDSQSKGSSEGD-EVSSSRQEEMDDDDEGNDLDVAEDLGSDXEKQ 1335

Query: 1106 KRQSTDEVDYDDASEDEPNEGVLSTGFEQEKENGNCLDTEMDGDDVSRNSQDAEMDGDDD 927
            K Q+ DE+DY+D SED+ N    STGFE E + G+  + E+  +D+    +D+  +   +
Sbjct: 1336 KLQANDEMDYEDDSEDDLNAKESSTGFESEVDQGD--EAEITNNDMIEIVKDSASENQPE 1393

Query: 926  ASNLPSESQSPXXXXXXXXXXXXXXXXXXRQLSRKDADRSIEVXXXXXXXXXXXXXXXTD 747
              ++ S+S S                    +L RK+ DRSI V                 
Sbjct: 1394 IVDV-SKSMS----KEKTTETSKEKKKVKSELVRKETDRSIFV---EAKENHFEVHFKFT 1445

Query: 746  EDPHILLQQVALNVAKKVYIKSAGDIEHCQKIDCSNGQVLCH-------SNVSAEEKKRN 588
             +PH LL Q+    A+KV I+ +G I  CQ+I C  GQV+ H        N+  EEK++ 
Sbjct: 1446 NEPHTLLSQIVQRAAQKVSIQRSGKIIQCQQITCKEGQVIYHGNNLKERKNLKPEEKEKI 1505

Query: 587  SALLTAGVDFKAFWEMQENLDVNCIYSNNIHSMLKTYGVEAARESIIREVSHVFNSYGIT 408
             AL T+GVDFK  WEMQ+ LDV  IYSN+IH+ML+TYGVEAAR +IIRE+ ++F SYGI+
Sbjct: 1506 PALQTSGVDFKTLWEMQDELDVRYIYSNDIHAMLQTYGVEAARATIIREIQNIFTSYGIS 1565

Query: 407  VDIRHLTLIADFMTHSGGYNPMSRSGGIAESVSPFSKITFETASKFIVEAALYGLTDDLE 228
            V+IRHL+L+AD+MTHSGGY PMSR GGI++S+SPFS++TFETA KFIV+AAL+G  D+LE
Sbjct: 1566 VNIRHLSLVADYMTHSGGYRPMSRLGGISDSISPFSRMTFETAGKFIVQAALHGEVDNLE 1625

Query: 227  SPSARVCLGLPVKVGTGCFDVMQKVDI 147
            +PS+R+CLGLPVK+GTG FD+MQK+++
Sbjct: 1626 TPSSRICLGLPVKMGTGSFDLMQKIEV 1652


>ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Glycine
            max]
          Length = 1651

 Score = 1686 bits (4367), Expect = 0.0
 Identities = 934/1716 (54%), Positives = 1152/1716 (67%), Gaps = 31/1716 (1%)
 Frame = -3

Query: 5201 MSYRTEGATESIEAVRFGFFTDEEVRKHSFVQSTSADLLHGVV-PAXXXXXXXXXXXXXD 5025
            M   TEGAT S+EAV F F TD+E+R+ S V+ TS  L+  ++ P              D
Sbjct: 1    MVLTTEGATNSVEAVAFSFLTDDEIRRSSRVKITSPILVDFLLHPVPDGLYDAALGPFDD 60

Query: 5024 RAPCKSCGQSGR-CPGHCGHVALILPVYNPLLFNMLYAVLQRTCFFCHHFRAIRSKVENC 4848
            ++ CKSCGQ+ + CPGH GH+ L+ PVYNPL+FN+L  +LQRTCF CHHFRA   +V+  
Sbjct: 61   KSLCKSCGQTSKHCPGHFGHIELVSPVYNPLMFNILSNILQRTCFTCHHFRAPSKEVDIR 120

Query: 4847 ISQLELIMKGNVIGAKNLDSLYLEGHSNQEDSDGSHVSSTVSLGAQYHSLEHSKQQKWTS 4668
             SQLELIMKG++I AK L+S+ + G S    +    +       +Q +S E   +  WTS
Sbjct: 121  TSQLELIMKGDIIRAKRLESI-IPGKSVDSFNPDESIHPGDGDESQCYSAEQLGEN-WTS 178

Query: 4667 LQLTEAMSILDNFLKPKHVDCKNCGAKNPKITKPTFGWFKTSMPDA-HARANRIKGCKLK 4491
            LQ +EAMS+L   L  KH  C+ CGAKNPKI+KPTFGWF  ++  A   RA+ I+  +  
Sbjct: 179  LQFSEAMSVLRKLLTKKHKKCQKCGAKNPKISKPTFGWFHMNVLSADETRADTIRSVE-- 236

Query: 4490 GSFVGEIEEDPSSDIENADNTSPWGNGSDTSEITPINETKRKKNKRGQAHPELLKES-FS 4314
                        S+  N D +   G+ +D  +IT     KR K K+ +   +L +++  S
Sbjct: 237  ------------SETTNDDISLGGGDTTDVEDITSAGTAKRDKRKKEKLSYKLAEQNKLS 284

Query: 4313 GSLLPSEVRALLKLLWENEFELCSFICDIQRDSSDVLKDNAGYSMFFLDTILVPPIKFRP 4134
            GSLLPS+V+ +L+LLWENE  LCS+I DIQ          AG+SMFFL+ I VPPIKFRP
Sbjct: 285  GSLLPSQVKGILELLWENEARLCSYINDIQDQG---FGKKAGHSMFFLENIFVPPIKFRP 341

Query: 4133 PSKGGDSVMEHPQTVLLGKVIEANMRLGNAYESKSGHSKTVVDRWIALQQSVNVSFDSKT 3954
            P+KGGD+VMEHPQTVLL KV++ N+ LG+A+ +KS  SK V+ RW+ LQQSVN+ FD+KT
Sbjct: 342  PTKGGDNVMEHPQTVLLTKVLQCNISLGDAHLNKSDPSK-VLSRWMDLQQSVNMLFDNKT 400

Query: 3953 MGQGQRVGASGICQLLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALR 3774
               G+R  A+GICQLLEKK+GIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALR
Sbjct: 401  -ASGKRDVATGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALR 459

Query: 3773 LTYPERVTPWNIGKLRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXXXXRKLPSSR 3594
            L+YPERVTPWN+ KLR+AI+NG E HPGATHYADK S+  L             KLP+SR
Sbjct: 460  LSYPERVTPWNVVKLRNAILNGPESHPGATHYADKVSIVKLPPKGKLLSLTSR-KLPTSR 518

Query: 3593 GVVTQPGKSGDIDFEGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHY 3414
            GV+   GK  D +FEGK+V RHL+DGD+VLVNRQPTLHKPSIMAH+VRVLKGEKT+RMHY
Sbjct: 519  GVILHQGKISDHEFEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHIVRVLKGEKTVRMHY 578

Query: 3413 ANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDHIISAV 3234
            ANCSTYNADFDGDE+NVHFPQDEISRAEAYNIVNANNQYV P+ G+PIRALIQDHI+SA 
Sbjct: 579  ANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALIQDHIVSAA 638

Query: 3233 LLTKKDTFLSRDEYSQLLYXXXXXXXXXXXXSCKPGQKVCLV-SEDEMQTLQPAILKPEP 3057
            LLTKKDTFLS +E++QLLY              K GQKV +  SE EM    PAI KPEP
Sbjct: 639  LLTKKDTFLSYEEFNQLLYSSGVSMAGLGSFYGKHGQKVFISNSESEMFLFPPAIWKPEP 698

Query: 3056 LWTGKQVITAVLNHITKGHPPFTVEKEGKIPREYFGSNTGEDDLSVERKTSXXXXXXXXX 2877
            LWTGKQVI+A+L +IT+G PPFT EK  KIP  +F +   +     E  +          
Sbjct: 699  LWTGKQVISALLYYITRGSPPFTAEKNAKIPSNFFKTQIRKGKRYTEDTSKKKDKPDEDK 758

Query: 2876 XXXEILYVSKNDLVRGVIDKAQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHG 2697
                 L + KNDLVRGV+DKAQFG YG++HTVQELYG   AG LLSA SRLFT FLQMHG
Sbjct: 759  -----LLIYKNDLVRGVVDKAQFGDYGMIHTVQELYGSNVAGNLLSALSRLFTTFLQMHG 813

Query: 2696 FTCGVDDLLILKYRDIERKQELEKCQDFGXXXXXXXXXXXXKRKDIRNVYSKFLGIKY-D 2520
            FTCGVDDL++ + +D+ER  +L+ C+  G                  +V+ +F+G+K  D
Sbjct: 814  FTCGVDDLMLTEGKDVERMNQLKSCEIIGD-----------------SVHREFIGVKNSD 856

Query: 2519 EIDPKELPNEIEYGICRYGEVGTTSLDNEMRKHL-SNASTEVNKDLFVKGLLKPFPKNCF 2343
             IDP  L   IE  I   GE   T LD +M  +L S  S+ + K L  +G+LKP  KNC 
Sbjct: 857  NIDPVTLQLNIEKKIRSNGEAALT-LDRKMTSNLNSRTSSGILKKLLSEGILKPSGKNCI 915

Query: 2342 SLMTTTGAKGGMVNFQQVSSLLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDN 2163
            SLMTT+GAKG MVNFQQ+SS LGQQ+LEGKRVPRMVSGKTLP F PWD SPRAGGFI D 
Sbjct: 916  SLMTTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFPPWDCSPRAGGFIIDR 975

Query: 2162 FLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSI 1983
            FLT LHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLECLKVCYDHTVRDADGSI
Sbjct: 976  FLTALHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLECLKVCYDHTVRDADGSI 1035

Query: 1982 IQFSYGEDGVDVHQTSFISKFKALEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREF 1803
            IQF YGEDGVDVHQTSFI++F AL  N +++   +   LD+S+ YI  LP  LE KA +F
Sbjct: 1036 IQFHYGEDGVDVHQTSFITEFGALSTNKELVFSNYCRQLDRSSPYINKLPEALEGKAEKF 1095

Query: 1802 IKGVPEKKKHIDDEDFMKLMNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGR 1623
             K        ++  DF++LM HKY S LAQPGEPVGVLA+QSVGEP+TQMTLNTFHLAGR
Sbjct: 1096 SK--QRNLGSMEQADFLRLMEHKYVSCLAQPGEPVGVLASQSVGEPATQMTLNTFHLAGR 1153

Query: 1622 GEMNVTLGIPRLQEILMTASVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITEN 1443
            GEMNVTLGIPRLQEILM A+ +IKTP MTCPL  +KS  + A  LA  LKK+TV DI ++
Sbjct: 1154 GEMNVTLGIPRLQEILMAAARDIKTPFMTCPLRHDKSMKD-AICLADKLKKITVADIIKS 1212

Query: 1442 IYVGL-----RHHLYSRVYTLAMNLYRPASN---SGISLKDYKETLTIQFVRELEDAIHN 1287
            + V +            +Y L M LY+       + I+L D++ETL + FVRELEDAI N
Sbjct: 1213 MKVSVVPVTVLGGQVCSIYKLVMKLYKSKQYPEYTDITLDDWEETLRVNFVRELEDAIQN 1272

Query: 1286 QINAIKRMHGIQAFDQPSQSKASKETDEEVSG-----MRGEENDDD----GDVSXXXXXX 1134
             +  + ++ GI+ F    QS  S  +++  S       +G+ NDDD    G V       
Sbjct: 1273 HMTLLSKISGIKKFKTDPQSNYSNSSEDAHSNGSESEKKGQNNDDDDEDGGGVEDTEGYE 1332

Query: 1133 XXXXXAQKRKRQSTDEVDYDDASEDEPNEGVLSTGFEQEKENGNCLDTEMDGDDVSRNSQ 954
                 AQKRK Q TDEVDY+D  E+E ++G LS   E ++          DG DV  N  
Sbjct: 1333 DLGSDAQKRKLQGTDEVDYEDGPEEETHDGELSEEIEGDE----------DGSDVDANEN 1382

Query: 953  DAEMDGDDDASNLPSESQSPXXXXXXXXXXXXXXXXXXRQLSRKDADRSIEVXXXXXXXX 774
               +   +++  L   S+S                    + + K  DR+I V        
Sbjct: 1383 YNNVTDANNSEGLEKPSKSKTIDEKQNLKREKKKS----EPTTKKYDRAIFVEAKGKHFE 1438

Query: 773  XXXXXXXTDEDPHILLQQVALNVAKKVYIKSAGDIEHCQKIDCSNGQVLCHSN------- 615
                      +PHILL Q+A   AKKV I++ G +  C+ I C    V+ +         
Sbjct: 1439 IHFRFTG---EPHILLTQIAQRTAKKVCIQNFGKVGECKAITCKESGVIYYGKDGRKRIE 1495

Query: 614  VSAEEKKRNSALLTAGVDFKAFWEMQENLDVNCIYSNNIHSMLKTYGVEAARESIIREVS 435
            +SA EK++  AL T+GV FK FWE++++LDV  IYSNN+H+ML  YGVEAARE+IIREV 
Sbjct: 1496 ISASEKEQIPALQTSGVHFKTFWELEDDLDVRYIYSNNVHAMLNAYGVEAARETIIREVQ 1555

Query: 434  HVFNSYGITVDIRHLTLIADFMTHSGGYNPMSRSGGIAESVSPFSKITFETASKFIVEAA 255
            +VF SYGI+V+IRHLTLIADFMTH+G Y PM+R+G IA+S SPF K+ FETA  FIVEAA
Sbjct: 1556 NVFKSYGISVNIRHLTLIADFMTHTGSYRPMNRTGSIADSTSPFIKMCFETAGNFIVEAA 1615

Query: 254  LYGLTDDLESPSARVCLGLPVKVGTGCFDVMQKVDI 147
             +G  D+LE+PSAR+CLGLPVK+GTGC D++QK++I
Sbjct: 1616 YHGQVDNLETPSARICLGLPVKMGTGCHDLIQKLEI 1651


>ref|XP_007145632.1| hypothetical protein PHAVU_007G255400g [Phaseolus vulgaris]
            gi|561018822|gb|ESW17626.1| hypothetical protein
            PHAVU_007G255400g [Phaseolus vulgaris]
          Length = 1637

 Score = 1681 bits (4354), Expect = 0.0
 Identities = 929/1712 (54%), Positives = 1161/1712 (67%), Gaps = 31/1712 (1%)
 Frame = -3

Query: 5189 TEGATESIEAVRFGFFTDEEVRKHSFVQSTSADLLHGVV-PAXXXXXXXXXXXXXDRAPC 5013
            TEG T S++AV F F T +E+ + S V+ T+  LL+ ++ P              D++ C
Sbjct: 5    TEGVTNSVKAVGFSFLTSDELLRSSRVKITNPILLNPLLNPVSGGLYDPALGPLDDKSLC 64

Query: 5012 KSCGQSGR-CPGHCGHVALILPVYNPLLFNMLYAVLQRTCFFCHHFRAIRSKVENCISQL 4836
            KSCGQ  + CPGH GH+ L+ PVYNPL+FN+L ++LQRTCF CHHF A R +VE   SQ 
Sbjct: 65   KSCGQGSKHCPGHFGHIELVSPVYNPLMFNILSSILQRTCFSCHHFHASRKEVEMRTSQF 124

Query: 4835 ELIMKGNVIGAKNLDSLYLEGHSNQEDSDGSHVSSTVSLGAQYHSLEHSKQQKWTSLQLT 4656
            ELIMKG++I AK+LDS+  +  ++  D D S       LG           + W+SLQ +
Sbjct: 125  ELIMKGDIIRAKSLDSIISDESNHSGDGDESQ--GVEQLG-----------ENWSSLQFS 171

Query: 4655 EAMSILDNFLKPKHVDCKNCGAKNPKITKPTFGWFKTS-MPDAHARANRIKGCKLKGSFV 4479
            EAMS+L  FL  K+  C+NCG  NP+I+KPTFGWF  + + D  ARAN ++  +      
Sbjct: 172  EAMSVLRKFLLRKYKKCQNCGVVNPRISKPTFGWFHMNVLSDDEARANTMRALE------ 225

Query: 4478 GEIEEDPSSDIENADNTSPWGNGSDTSEITPINETKRKKNKRGQAHPELLKES-FSGSLL 4302
                    S+  N D +   G  ++  +IT     KR K K+G+   +L  ++  SGSLL
Sbjct: 226  --------SETINDDMSLGGGETTEEEDITSTGTAKRDKRKKGKLSSKLAAQNKLSGSLL 277

Query: 4301 PSEVRALLKLLWENEFELCSFICDIQRDSSDVLKDNAGYSMFFLDTILVPPIKFRPPSKG 4122
            PS+V+ +L+LLWENE  LCS+I DIQ          AG+SMFFL+ I VPPIKFRPP+KG
Sbjct: 278  PSQVKGILELLWENEARLCSYISDIQDQG---FGKKAGHSMFFLENIFVPPIKFRPPTKG 334

Query: 4121 GDSVMEHPQTVLLGKVIEANMRLGNAYESKSGHSKTVVDRWIALQQSVNVSFDSKTMGQG 3942
            GD VMEHPQTVLL KV++ N+ LG+A+ +K   SK V+ RW+ LQQSVN+ FD+KT GQG
Sbjct: 335  GDDVMEHPQTVLLTKVLQGNISLGDAHINKLDPSK-VLSRWMDLQQSVNLLFDNKTSGQG 393

Query: 3941 QRVGASGICQLLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYP 3762
            +   A+GICQLLEKK+GIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRL+YP
Sbjct: 394  EV--AAGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLSYP 451

Query: 3761 ERVTPWNIGKLRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXXXXRKLPSSRGVVT 3582
            ERVTPWN+  LR+AI+NG + HPGATHY D+ +   L             KLPSSRGV+ 
Sbjct: 452  ERVTPWNVTMLRNAILNGPQSHPGATHYTDQQATVKLPPNGKLLSFISR-KLPSSRGVIL 510

Query: 3581 QPGKSGDIDFEGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCS 3402
              GK  D +FEGKIV RHL+DGD+VLVNRQPTLHKPSIMAHVVRVLKGEKT+RMHYANCS
Sbjct: 511  DHGKISDQEFEGKIVYRHLKDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTVRMHYANCS 570

Query: 3401 TYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDHIISAVLLTK 3222
            TYNADFDGDE+NVHFPQDEISRAEAYNIVNANNQYV P+ G+PIRALIQDHI+SA LLTK
Sbjct: 571  TYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALIQDHIVSAALLTK 630

Query: 3221 KDTFLSRDEYSQLLYXXXXXXXXXXXXSCKPGQKVCLV-SEDEMQTLQPAILKPEPLWTG 3045
            KDTF++ + + QLLY            S K GQKV +  SE EM    PAI KPEPLWTG
Sbjct: 631  KDTFITYEVFIQLLYSSGVSMTGLGSFSGKHGQKVFMTNSEFEMFLFPPAIWKPEPLWTG 690

Query: 3044 KQVITAVLNHITKGHPPFTVEKEGKIPREYFGSNTGEDDLSVERKTSXXXXXXXXXXXXE 2865
            KQVI+A+L +IT+  PPFTVEK  KIP  +F +   +     +R T             +
Sbjct: 691  KQVISALLYYITRDSPPFTVEKNAKIPSNFFKTQVRDG----KRHTRDKSRNKVEPDDED 746

Query: 2864 ILYVSKNDLVRGVIDKAQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCG 2685
             L + KNDLVRGV+DKAQFG YG++HTVQELYG K AG LLSA SRLFT FLQMHGFTCG
Sbjct: 747  KLLIYKNDLVRGVVDKAQFGDYGIIHTVQELYGSKVAGNLLSALSRLFTTFLQMHGFTCG 806

Query: 2684 VDDLLILKYRDIERKQELEKCQDFGXXXXXXXXXXXXKRKDIRNVYSKFLGI-KYDEIDP 2508
            VDDL+I + +D+ER  +L  C++ G               DI  V+ +F+G+   D IDP
Sbjct: 807  VDDLMITEEKDVERMDQLRSCEEIG---------------DI--VHREFIGVMNSDIIDP 849

Query: 2507 KELPNEIEYGICRYGEVGTTSLDNEMRKHL-SNASTEVNKDLFVKGLLKPFPKNCFSLMT 2331
              L   IE  I   GE   T LD +M  +L S  S+ + KDL   G+LKP  KNC SLMT
Sbjct: 850  ITLQLNIEKKIRSNGEAALTYLDRKMTSNLNSRTSSGILKDLLSDGILKPSGKNCISLMT 909

Query: 2330 TTGAKGGMVNFQQVSSLLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTG 2151
            T+GAKG MVNFQQ+SS LGQQ+LEGKRVPRMVSGKTLP F PWD SPRAGGFI D FLTG
Sbjct: 910  TSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFAPWDCSPRAGGFIIDRFLTG 969

Query: 2150 LHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFS 1971
            LHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLECLKVCYDHTVRDADGSIIQF 
Sbjct: 970  LHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLECLKVCYDHTVRDADGSIIQFH 1029

Query: 1970 YGEDGVDVHQTSFISKFKALEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAREFIKGV 1791
            YGEDGVDVH TSFI+KF+AL  N +++       LD+S+ YI  LP  L++KA  F +  
Sbjct: 1030 YGEDGVDVHHTSFINKFEALSTNKELVYGNCCRQLDRSSPYINKLPDALKEKAENFFRDS 1089

Query: 1790 PEKKK--HIDDEDFMKLMNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGE 1617
             +++    +   +F+KLM HKY S LAQPGE VGVLA+QSVGEP+TQMTLNTFHLAGRGE
Sbjct: 1090 LKQRNLGSLKRAEFLKLMEHKYVSCLAQPGESVGVLASQSVGEPATQMTLNTFHLAGRGE 1149

Query: 1616 MNVTLGIPRLQEILMTASVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITEN-- 1443
            MNVTLGIPRLQEI+M A+ +IKTP MTCPL   KS +E A  LA  LKK+TV DI ++  
Sbjct: 1150 MNVTLGIPRLQEIVMAAARDIKTPFMTCPLRSNKSMEE-AICLADKLKKITVADIIKSMK 1208

Query: 1442 ---IYVGLRHHLYSRVYTLAMNLYRP---ASNSGISLKDYKETLTIQFVRELEDAIHNQI 1281
               + V +       +Y L M LY+P      S I+L+D+++TL I FVRELEDAI N +
Sbjct: 1209 VSVVPVSVLGGQVCSIYKLVMKLYKPKQYPKYSDITLEDWEDTLRISFVRELEDAIENHM 1268

Query: 1280 NAIKRMHGIQAF--DQPSQSKASKE-----TDEEVSGMRGEENDDDGDVSXXXXXXXXXX 1122
              + ++ GI+ F  D  S S +S++     ++ E  G   +++DDD  V           
Sbjct: 1269 ALLSKISGIKKFKTDPQSHSNSSEDAHGNGSESETKGKSNDDDDDDDVVEDTEGYEDLGS 1328

Query: 1121 XAQKRKRQSTDEVDYDDASEDEPNEGVLSTGFEQEKENGNCLDTEMDGDDVSRNSQDAEM 942
             AQKRKRQ TDEVDY+D  E+E ++GVLS   E +++N +        D+++ ++ D+E 
Sbjct: 1329 DAQKRKRQGTDEVDYEDGPEEETHDGVLSEEIENDEDNVD--------DNMTLDASDSE- 1379

Query: 941  DGDDDASNLPSESQSPXXXXXXXXXXXXXXXXXXRQLSRKDADRSIEVXXXXXXXXXXXX 762
             G D+     SES+S                    + + +  DR++ V            
Sbjct: 1380 -GLDEL----SESKS------IFEKDSLKREKKKSRPTTRKYDRAVFVKAKGMHFQIHFK 1428

Query: 761  XXXTDEDPHILLQQVALNVAKKVYIKSAGDIEHCQKIDCSNGQVLCH-------SNVSAE 603
                  +P ILL ++AL  AKKV I+++G +  C+ + C    V+ +        ++ A 
Sbjct: 1429 FTG---EPDILLAEIALRSAKKVCIQNSGRVGECKAVTCKESGVMYYGEDSRKRDDIPAS 1485

Query: 602  EKKRNSALLTAGVDFKAFWEMQENLDVNCIYSNNIHSMLKTYGVEAARESIIREVSHVFN 423
             K++  AL T+GV FK FWE+Q++LDV  IYSNN+H+ML  YGVEAARE+IIREV +VF 
Sbjct: 1486 VKEKIPALQTSGVHFKTFWELQDDLDVRYIYSNNVHAMLNAYGVEAARETIIREVQNVFK 1545

Query: 422  SYGITVDIRHLTLIADFMTHSGGYNPMSRSGGIAESVSPFSKITFETASKFIVEAALYGL 243
            SYGI+V+IRHLTLIADFMTHSGGY PM+R+G IA+  SPF K+ FETASKFIVEAA +G 
Sbjct: 1546 SYGISVNIRHLTLIADFMTHSGGYRPMNRNGSIADCTSPFIKMCFETASKFIVEAAYHGQ 1605

Query: 242  TDDLESPSARVCLGLPVKVGTGCFDVMQKVDI 147
             D+LE+PS+R+CLGLPVK+GTGC D++QK++I
Sbjct: 1606 VDNLETPSSRICLGLPVKMGTGCHDLIQKLEI 1637


>ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
            arietinum]
          Length = 1650

 Score = 1674 bits (4335), Expect = 0.0
 Identities = 938/1718 (54%), Positives = 1153/1718 (67%), Gaps = 34/1718 (1%)
 Frame = -3

Query: 5201 MSYRTEGATESIEAVRFGFFTDEEVRKHSFVQSTSA---DLLHGVVPAXXXXXXXXXXXX 5031
            M+  TEGAT S++AV F F TDEE+ K S V+ T+    D LH   P             
Sbjct: 1    MALATEGATNSVKAVAFSFLTDEEILKSSRVKITNPILLDTLHS--PVAGGLYDPALGPF 58

Query: 5030 XDRAPCKSCGQSG-RCPGHCGHVALILPVYNPLLFNMLYAVLQRTCFFCHHFRAIRSKVE 4854
             +++PC+SCGQ+   CPGH GH+ L+ PVYNPL+F+ML  VL+RTCF CHHF+A R++VE
Sbjct: 59   HEKSPCQSCGQNSYHCPGHFGHIELVSPVYNPLMFSMLSNVLRRTCFSCHHFQASRNEVE 118

Query: 4853 NCISQLELIMKGNVIGAKNLDSLYLEGHSNQEDSDGSHVSSTVSLGAQYHSLEHSKQQKW 4674
               +QLELIMKGN+  AKNLD++ L+  ++  D + S  SS   LG           + W
Sbjct: 119  LRANQLELIMKGNIAKAKNLDAINLDESADLSDGNDSQCSSDEQLG-----------ENW 167

Query: 4673 TSLQLTEAMSILDNFLKPKHVDCKNCGAKNPKITKPTFGWFKT-SMPDAHARANRIKGCK 4497
            TSLQ +EAMS+L  FLK +   C+NCG  NPKITKPTFGWF   ++  A ARAN I G  
Sbjct: 168  TSLQFSEAMSVLRKFLKKEFRKCQNCGNINPKITKPTFGWFHVKALSAAQARANVISG-- 225

Query: 4496 LKGSFVGEIEEDPSSDIENADNTSPWGNGSDTSEITP---INETKRKKNKRGQAHPELLK 4326
            +  S   EI  D  S + N D T       D  +IT     N   +++NK  + H +L  
Sbjct: 226  IDASLASEIIHDDIS-LGNGDTT-------DVEDITSGDTANSNAKRQNKLAR-HNKL-- 274

Query: 4325 ESFSGSLLPSEVRALLKLLWENEFELCSFICDIQRDSSDVLKDNAGYSMFFLDTILVPPI 4146
               SGSLLPS+V+ +L+LLWENE  LC +I DIQ          AG+SMFFLD I VPPI
Sbjct: 275  ---SGSLLPSQVQGILELLWENEARLCLYISDIQGQG---FGKKAGHSMFFLDNIYVPPI 328

Query: 4145 KFRPPSKGGDSVMEHPQTVLLGKVIEANMRLGNAYESKSGHSKTVVDRWIALQQSVNVSF 3966
            KFRPP+KG D V EH QTVLL +V+E+N+ LG A+ +KS  S  V+ RW+ LQ+SVN+ F
Sbjct: 329  KFRPPTKGDDKVSEHAQTVLLTRVLESNISLGQAHLNKSDAS-VVLRRWMDLQRSVNLLF 387

Query: 3965 DSKTMGQGQRVGASGICQLLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPY 3786
            D+KT   GQ+   +GICQLLEKK+GIFRQKMMGKRVN+ACRSVISPDPYLAVNEIGIPPY
Sbjct: 388  DNKT-ASGQKDLVTGICQLLEKKEGIFRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPY 446

Query: 3785 FALRLTYPERVTPWNIGKLRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXXXXRKL 3606
            FALRLTYPERVTPWN+ +LR+AI+NG E HPGAT YADK+S  L             RKL
Sbjct: 447  FALRLTYPERVTPWNVVELRNAILNGPETHPGATLYADKTST-LKLPLDRRSRSLTSRKL 505

Query: 3605 PSSRGVVTQPGKSGDIDFEGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTL 3426
             SSRGV+   GK  D +FEGK+V RHL+DGD+VLVNRQPTLHKPSIMAHVVRVLKGEKT+
Sbjct: 506  QSSRGVIMHNGKIHDNEFEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTV 565

Query: 3425 RMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDHI 3246
            RMHYANCSTYNADFDGDE+NVHFPQDEISRAEAYNIVNANNQYV P+ G+PIRALIQDHI
Sbjct: 566  RMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALIQDHI 625

Query: 3245 ISAVLLTKKDTFLSRDEYSQLLYXXXXXXXXXXXXSCKPGQKVCLVSED-EMQTLQPAIL 3069
            +SA LLTKKDTFLS +E++QLLY              KPGQK+ + + D EM    PAI 
Sbjct: 626  VSAALLTKKDTFLSCEEFNQLLYSSGVSMTGMGPFPGKPGQKIFMSNSDSEMFLFPPAIF 685

Query: 3068 KPEPLWTGKQVITAVLNHITKGHPPFTVEKEGKIPREYFGSNTGEDDLSVERKTSXXXXX 2889
            KPEPLWTGKQVI+A+L +ITKG PPFTVEK  KIP  +F +   E      +K +     
Sbjct: 686  KPEPLWTGKQVISALLYYITKGSPPFTVEKNAKIPSSFFKTRMREG-----KKRTKDTSI 740

Query: 2888 XXXXXXXEILYVSKNDLVRGVIDKAQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFL 2709
                   + L + +NDLVRGV+DKAQFG YG+VHTVQE YG  TAGILLSA SRLFT FL
Sbjct: 741  KKDEPDEDKLLIYRNDLVRGVVDKAQFGDYGIVHTVQEFYGSNTAGILLSALSRLFTNFL 800

Query: 2708 QMHGFTCGVDDLLILKYRDIERKQELEKCQDFGXXXXXXXXXXXXKRKDIRNVYSKFLGI 2529
            QMHGFTCGVDDLL+ + +D ER  +LE C++ G               DI  V+ +F+G+
Sbjct: 801  QMHGFTCGVDDLLLTEGKDSERTNQLESCEEIG---------------DI--VHREFIGV 843

Query: 2528 -KYDEIDPKELPNEIEYGICRYGEVGTTSLDNEMRKHL-SNASTEVNKDLFVKGLLKPFP 2355
             + D IDP  +   +E  I   GE   T LD +M  +L S  ST V K L  +G+LKP  
Sbjct: 844  MEGDNIDPITMQLNVEKKIRSNGEAAITYLDRKMISNLNSRTSTGVLKVLLSEGILKPSG 903

Query: 2354 KNCFSLMTTTGAKGGMVNFQQVSSLLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGF 2175
            KN  SLMTT+GAKG MVNFQQ+SS LGQQ+LEGKRVPRMVSGKTLP F  WD SPRAGGF
Sbjct: 904  KNWISLMTTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFTSWDCSPRAGGF 963

Query: 2174 ISDNFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDA 1995
            I D FLT L PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLECLKVCYDHTVRDA
Sbjct: 964  IIDRFLTALRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLECLKVCYDHTVRDA 1023

Query: 1994 DGSIIQFSYGEDGVDVHQTSFISKFKALEENHQILREKFLHHLDKSNSYIEHLPPKLEKK 1815
            DGSIIQF YGEDGVDVHQTSFI+KF+AL  N +++       LDKS+ YI  LP  L+ K
Sbjct: 1024 DGSIIQFHYGEDGVDVHQTSFINKFEALSTNKELVYSNCCRELDKSSPYINKLPDALKGK 1083

Query: 1814 AREFIKGVPEKKKH---IDDEDFMKLMNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLN 1644
            A +FI     K+++   +   +F+ LM HKY SSLAQPGEPVGVLA+QSVGEP+TQMTLN
Sbjct: 1084 AEKFILDSSSKQRNSGSMTHTNFLHLMEHKYVSSLAQPGEPVGVLASQSVGEPATQMTLN 1143

Query: 1643 TFHLAGRGEMNVTLGIPRLQEILMTASVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVT 1464
            TFHLAGRGEMNVTLGIPRLQEIL  AS +IKTP MTCPL   KS ++  + LA  +KK+T
Sbjct: 1144 TFHLAGRGEMNVTLGIPRLQEILTAASAHIKTPFMTCPLRPNKSMEDAIR-LADKMKKIT 1202

Query: 1463 VGDITENIYVG-----LRHHLYSRVYTLAMNLYRP---ASNSGISLKDYKETLTIQFVRE 1308
            V DI E++ V      ++      +Y L M L++P      + ++LKD++ETL + FVR 
Sbjct: 1203 VADIIESMKVSVVPVTVQDGRICSIYKLMMKLHKPKHYPKYTDVTLKDWEETLRVSFVRG 1262

Query: 1307 LEDAIHNQINAIKRMHGIQAFDQPSQSKASKETDEEVS-GMRGEENDDDGDVSXXXXXXX 1131
            LEDAI N I  + ++ GI  F   +Q  +S   +++ S G   +++DDDGD         
Sbjct: 1263 LEDAIENNIALLAKISGITNFKTDAQPNSSNGAEDDPSNGKTNDDDDDDGDADDTEGAED 1322

Query: 1130 XXXXAQKRKRQSTDEVDYDDASEDEP-NEGVLS---TGFEQEKENGNCLDTEMDGDDVSR 963
                AQK KRQ  D+VDYDD  E+E   +G LS    G E  K+N    D   DGD    
Sbjct: 1323 LGLDAQKSKRQVVDDVDYDDGPEEETLEDGELSEDLEGVEDAKDNEYVKD---DGD---- 1375

Query: 962  NSQDAEMDGDDDASNLPSESQSPXXXXXXXXXXXXXXXXXXRQLSRKDADRSIEVXXXXX 783
               D +  GD+D S++                         + +S+K  DR + V     
Sbjct: 1376 GKDDEDGKGDEDGSDIEVNENDKKVTLGANYSQGPEENSKSQPVSKK-FDRRVYVKFEKR 1434

Query: 782  XXXXXXXXXXTDEDPHILLQQVALNVAKKVYIKSAGDIEHCQKIDCSNGQVLCH------ 621
                         +PHILL Q+A   A+KV I++ G +  C+ I C    V+ +      
Sbjct: 1435 HFEIHFKFTG---EPHILLAQIAQKTAEKVCIQNFGKVGQCKAITCKESGVIYYGEDDSK 1491

Query: 620  -SNVSAEEKKRNSALLTAGVDFKAFWEMQENLDVNCIYSNNIHSMLKTYGVEAARESIIR 444
               + +  K++  AL T+G+ FK+FWEMQ++L+V  +YSNN+H++L TYGVEAA+E+IIR
Sbjct: 1492 REEIPSSVKEKIPALQTSGIHFKSFWEMQDDLNVRYVYSNNVHAILSTYGVEAAKETIIR 1551

Query: 443  EVSHVFNSYGITVDIRHLTLIADFMTHSGGYNPMSRSGGIAESVSPFSKITFETASKFIV 264
            EV +VF SYGI+V+IRHL LIADFMTHSG Y PMSR G IA+S SPF KI FETAS FIV
Sbjct: 1552 EVQNVFKSYGISVNIRHLMLIADFMTHSGCYRPMSRKGSIADSTSPFLKICFETASNFIV 1611

Query: 263  EAALYGLTDDLESPSARVCLGLPVKVGTGCFDVMQKVD 150
            EAA +G  D+L+SPSAR+CLGLPVK+GTGC +++QK++
Sbjct: 1612 EAACHGQVDNLDSPSARICLGLPVKMGTGCHELIQKLE 1649


>ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
            arietinum]
          Length = 1660

 Score = 1660 bits (4299), Expect = 0.0
 Identities = 927/1722 (53%), Positives = 1152/1722 (66%), Gaps = 38/1722 (2%)
 Frame = -3

Query: 5201 MSYRTEGATESIEAVRFGFFTDEEVRKHSFVQSTSA---DLLHGVVPAXXXXXXXXXXXX 5031
            M+  TEGAT S++AV F F TDEE+ K S V+ T+    D LH   P             
Sbjct: 1    MALATEGATNSVKAVAFSFLTDEEILKSSRVKITNPILLDTLHS--PVAGGLYDPALGPF 58

Query: 5030 XDRAPCKSCGQSG-RCPGHCGHVALILPVYNPLLFNMLYAVLQRTCFFCHHFRAIRSKVE 4854
             +++PC+SCGQ+   CPGH GH+ L+ P YNPL+F+ML  VL+RTCF CHHF+A R +VE
Sbjct: 59   HEKSPCQSCGQNSYHCPGHFGHIELVSPAYNPLMFSMLSNVLRRTCFSCHHFQASRKEVE 118

Query: 4853 NCISQLELIMKGNVIGAKNLDSLYLEGHSNQEDSDGSHVSSTVSLGAQYHSLEHSKQQKW 4674
               +QLELIMKGN+  AKNLD + L+  ++  D D S  SS   LG           + W
Sbjct: 119  LRANQLELIMKGNIAKAKNLDEINLDESADLCDGDDSQCSSAEQLG-----------ENW 167

Query: 4673 TSLQLTEAMSILDNFLKPKHVDCKNCGAKNPKITKPTFGWFKT-SMPDAHARANRIKGCK 4497
            TSLQ +EAMS+L  FLK ++  C+NCG  NPKIT PTFGWF   ++  A ARAN I G  
Sbjct: 168  TSLQFSEAMSVLRKFLKKEYRKCQNCGYINPKITIPTFGWFHVKALSAAQARANVISGND 227

Query: 4496 LKGSFVGEIEEDPSSDIENADNTSPWGNGSDTSEITPINETKRKKNKRGQAHPELLKESF 4317
            +  S   EI  D  S + N D T       D  +IT   +      KR     ++   + 
Sbjct: 228  V--SLASEIIHDDIS-LGNGDTT-------DVEDITS-GDIANSNAKRHNKEKQISSHTL 276

Query: 4316 SGSLLPSEVRALLKLLWENEFELCSFICDIQRDSSDVLKDNAGYSMFFLDTILVPPIKFR 4137
            +GSLLPS+V+ +L+LLWEN+  LC +I DIQ      +   AG+SMFFL+ I VPPIKFR
Sbjct: 277  AGSLLPSQVQRILELLWENDARLCLYISDIQGLG---IGKKAGHSMFFLENIYVPPIKFR 333

Query: 4136 PPSKGGDSVMEHPQTVLLGKVIEANMRLGNAYESKSGHSKTVVDRWIALQQSVNVSFDSK 3957
            PP+KG D V EH QTVLL +V+E+N+ LG A+ +KS  S  V+ RW+ LQ+SVN+ FD+K
Sbjct: 334  PPTKGDDKVSEHAQTVLLTRVLESNISLGQAHLNKSDAS-VVLRRWMDLQRSVNLLFDNK 392

Query: 3956 TM-GQGQRVGASGICQLLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFA 3780
            T  G+ Q+   +GICQLLEKK+GIFRQKMMGKRVN+ACRSVISPDPYLAVNEIGIPPYFA
Sbjct: 393  TASGESQKDLVTGICQLLEKKEGIFRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPYFA 452

Query: 3779 LRLTYPERVTPWNIGKLRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXXXXRKLPS 3600
            LRLTYPERVTPWN+ +LR+AI+NG E HPGAT YADK+S  L             R+L S
Sbjct: 453  LRLTYPERVTPWNVVELRNAILNGPETHPGATLYADKTST-LKLPLDRRSRSLTSRRLQS 511

Query: 3599 SRGVVTQPGKSGDIDFEGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRM 3420
            SRGV+   GK  D +FEGK+V RHL+DGD+VLVNRQPTLHKPSIMAHVVRVLKGEKT+RM
Sbjct: 512  SRGVIMHNGKIHDNEFEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTVRM 571

Query: 3419 HYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDHIIS 3240
            HYANCSTYNADFDGDE+NVHFPQDEISRAEAYNIVNANNQYV P+ G+PIRALIQDHI+S
Sbjct: 572  HYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALIQDHIVS 631

Query: 3239 AVLLTKKDTFLSRDEYSQLLYXXXXXXXXXXXXSCKPGQKVCLVSED-EMQTLQPAILKP 3063
            A LLTKKDTFLS +E++QLLY              KPGQK+ + + D EM    PAI KP
Sbjct: 632  AALLTKKDTFLSCEEFNQLLYSSGVSMTGMGPFPGKPGQKIFMSNSDSEMFLFPPAIFKP 691

Query: 3062 EPLWTGKQVITAVLNHITKGHPPFTVEKEGKIPREYFGSNTGEDDLSVERKTSXXXXXXX 2883
            EPLWTGKQVI+A+L +ITKG PPFTVEK  KIP  +F +   E      +K +       
Sbjct: 692  EPLWTGKQVISALLYYITKGSPPFTVEKNAKIPSSFFKTRMREG-----KKRTKDTSIKK 746

Query: 2882 XXXXXEILYVSKNDLVRGVIDKAQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQM 2703
                 + L + KNDLVRGV+DKAQFG YG+VHTVQE YG  TAG LLSA SRLFT FLQM
Sbjct: 747  DEPDEDKLLIYKNDLVRGVVDKAQFGDYGIVHTVQEFYGSNTAGFLLSALSRLFTNFLQM 806

Query: 2702 HGFTCGVDDLLILKYRDIERKQELEKCQDFGXXXXXXXXXXXXKRKDIRNVYSKFLGI-K 2526
            HGFTCGVDDLL+ + +D ER  +LE C++ G               DI  V+ +F+G+ +
Sbjct: 807  HGFTCGVDDLLLTEGKDSERTNQLESCEEIG---------------DI--VHREFIGVME 849

Query: 2525 YDEIDPKELPNEIEYGICRYGEVGTTSLDNEMRKHL-SNASTEVNKDLFVKGLLKPFPKN 2349
             D IDP  +   +E  I   GE   T LD +M  +L S  S+ V K+L  +G+LKP  KN
Sbjct: 850  GDNIDPITMQLNVEKKIRSNGEAAITYLDRKMISNLNSRTSSGVLKELLSEGILKPSGKN 909

Query: 2348 CFSLMTTTGAKGGMVNFQQVSSLLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFIS 2169
              SLMTT+GAKG MVNFQQ+SS LGQQ+LEGKRVPRMVSGKTLP F  WD SPRAGGFI 
Sbjct: 910  WISLMTTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFTSWDCSPRAGGFII 969

Query: 2168 DNFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADG 1989
            D FLT L PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLECLKVCYDHTVRDADG
Sbjct: 970  DRFLTALRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLECLKVCYDHTVRDADG 1029

Query: 1988 SIIQFSYGEDGVDVHQTSFISKFKALEENHQILREKFLHHLDKSNSYIEHLPPKLEKKAR 1809
            SIIQF YGEDGVDVHQTSFI+KF+AL  N +++       LD+S+ YI  LP  L+ KA 
Sbjct: 1030 SIIQFHYGEDGVDVHQTSFINKFEALSTNKELVYSNCCRELDESSPYINKLPDALKGKAE 1089

Query: 1808 EFIKGVPEKKKH---IDDEDFMKLMNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTF 1638
            +FI+    K+++   +   +F++LM HKY SSLAQPGEPVGVLA+QSVGEP+TQMTLNTF
Sbjct: 1090 KFIRDSSSKQRNSGSMTHTNFLQLMEHKYVSSLAQPGEPVGVLASQSVGEPATQMTLNTF 1149

Query: 1637 HLAGRGEMNVTLGIPRLQEILMTASVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVG 1458
            HLAGRGEMNVTLGIPRLQEIL  AS +IKTP MTCPL   KS ++  + LA  +KK+TV 
Sbjct: 1150 HLAGRGEMNVTLGIPRLQEILTAASAHIKTPFMTCPLRPNKSMEDAIR-LADKMKKITVA 1208

Query: 1457 DITENIYVG-----LRHHLYSRVYTLAMNLYRP---ASNSGISLKDYKETLTIQFVRELE 1302
            DI E++ V      ++      +Y L M L++P      + ++LKD++ETL + FVR LE
Sbjct: 1209 DIIESMKVSVVPVTVQDGRICSIYKLMMKLHKPKHYPKYTDVTLKDWEETLRVSFVRGLE 1268

Query: 1301 DAIHNQINAIKRMHGIQAFDQPSQSKASKETDEEVSGMR---GEENDDDGDVSXXXXXXX 1131
            DAI N I  + ++ GI  F   +Q  +S   +++ S  +    +++DDDGD         
Sbjct: 1269 DAIENNIALLAKISGITNFKTDAQPNSSNGAEDDPSNGKTNDDDDDDDDGDADDTEGAED 1328

Query: 1130 XXXXAQKRKRQSTDEVDYDDASEDEP-NEGVLS---TGFEQEKENGNCLDTEMDGDDVSR 963
                AQK KRQ  D+VDYDD  E+E   +G LS    G E  K+N +  D   DGD    
Sbjct: 1329 LGLDAQKSKRQVVDDVDYDDGPEEETLEDGELSEDLEGVEDAKDNEHVKD---DGD---- 1381

Query: 962  NSQDAEMDGDDDASNLPSESQSPXXXXXXXXXXXXXXXXXXRQLSRKDADRSIEVXXXXX 783
               D +  GD+D S++                         + +S+K  DR + V     
Sbjct: 1382 GKDDEDGKGDEDGSDIEVNENDKKVTLGVNYSQGPEENSKSQPVSKK-FDRRVYV---KF 1437

Query: 782  XXXXXXXXXXTDEDPHILLQQ----VALNVAKKVYIKSAGDIEHCQKIDCSNGQVLCH-- 621
                        ++PHILL Q    +A   A+KV I++ G +  C+ I C    V+ +  
Sbjct: 1438 EKRHFEIHFKFTDEPHILLAQLLSTIAQKTAEKVCIQNFGKVGQCKAITCKESGVIYYGE 1497

Query: 620  -----SNVSAEEKKRNSALLTAGVDFKAFWEMQENLDVNCIYSNNIHSMLKTYGVEAARE 456
                   + +  K++  AL T+G+ FK+FWEMQ++L+V  +YSNN+H++L TYGVEAA+E
Sbjct: 1498 DDSKREEIPSSVKEKIPALQTSGIHFKSFWEMQDDLNVRYVYSNNVHAILSTYGVEAAKE 1557

Query: 455  SIIREVSHVFNSYGITVDIRHLTLIADFMTHSGGYNPMSRSGGIAESVSPFSKITFETAS 276
            +IIREV +VF SYGI+V+IRHL LIADFMTHSG Y PMSR G IA+S SPF KI FETAS
Sbjct: 1558 TIIREVQNVFKSYGISVNIRHLMLIADFMTHSGCYRPMSRKGSIADSTSPFLKICFETAS 1617

Query: 275  KFIVEAALYGLTDDLESPSARVCLGLPVKVGTGCFDVMQKVD 150
             FIVEAA +G  D+L+SPSAR+CLGLPVK+GTGC +++QK++
Sbjct: 1618 NFIVEAACHGQVDNLDSPSARICLGLPVKMGTGCHELIQKLE 1659


>ref|XP_006290488.1| hypothetical protein CARUB_v10016563mg [Capsella rubella]
            gi|482559195|gb|EOA23386.1| hypothetical protein
            CARUB_v10016563mg [Capsella rubella]
          Length = 1651

 Score = 1654 bits (4283), Expect = 0.0
 Identities = 915/1715 (53%), Positives = 1147/1715 (66%), Gaps = 34/1715 (1%)
 Frame = -3

Query: 5189 TEGATESIEAVRFGFFTDEEVRKHSFVQSTSADLLHGVV-PAXXXXXXXXXXXXXDRAPC 5013
            TEGA++ +E+VRF F T+++VRKHSF++ TS  LL  V  P              D+  C
Sbjct: 7    TEGASQVVESVRFSFMTEQDVRKHSFLKVTSPILLDNVERPVPGGLYDPVMGPLNDKEAC 66

Query: 5012 KSCGQSGR-CPGHCGHVALILPVYNPLLFNMLYAVLQRTCFFCHHFRAIRSKVENCISQL 4836
            KSCGQ    CPGHCGH+ L+ P+Y+PLLF++LY  LQRTCFFCHHF A  + V+ C+SQL
Sbjct: 67   KSCGQLRLGCPGHCGHIELVYPIYHPLLFSLLYNFLQRTCFFCHHFMAKPNDVKKCVSQL 126

Query: 4835 ELIMKGNVIGAKNLDSLYLEGHSNQEDSDGSHVSSTVSLGAQYHSLEHSKQQKWTSLQLT 4656
            +LIMKG+++ AK L+       +N ED + S  S   +  +Q       + Q+WTSLQ  
Sbjct: 127  KLIMKGDIVSAKQLEVKSDSTSTNSEDIEVSCESGVTNDSSQECEDPDMEDQRWTSLQFA 186

Query: 4655 EAMSILDNFLKPKHVDCKNCGAKNPKITKPTFGWFKTSMPDAHA-RANRIKGCKLKGSFV 4479
            E  +++ NF+K    +C  C AKNPK+ KP FGW +    +A A  AN I+G K+K S  
Sbjct: 187  EVTAVMKNFMKLTSKECNKCKAKNPKLEKPMFGWVRMKGMNASAVGANLIRGLKVKKS-- 244

Query: 4478 GEIEEDPSSDIENADNTSPWGNGSDT-SEITPINETKRKKNKRGQAHPELLKESFSGSLL 4302
                   +S +EN D++     G D  SE    ++ KR+K+       E  K++    LL
Sbjct: 245  -------TSSVENPDDS-----GIDALSEAEDSDKEKREKSTEIAKEFEKQKDT-KRDLL 291

Query: 4301 PSEVRALLKLLWENEFELCSFICDIQRDSSDVLKDNAGYSMFFLDTILVPPIKFRPPSKG 4122
            PSEVRA+LK LWENE E CSFI D+ +  S+ +     YSMFFL+++LVPPIKFRPP+KG
Sbjct: 292  PSEVRAILKNLWENEHEYCSFIGDLWQSGSEKID----YSMFFLESVLVPPIKFRPPTKG 347

Query: 4121 GDSVMEHPQTVLLGKVIEANMRLGNAYESKSGHSKTVVDRWIALQQSVNVSFDSKTMGQG 3942
            GDSVMEHPQTV L KV+ +N+ LGNA  +K   SK V+ RW+ LQ+SVNV FDSK     
Sbjct: 348  GDSVMEHPQTVGLNKVLLSNITLGNACTNKLDQSK-VISRWMNLQESVNVLFDSKAASVQ 406

Query: 3941 QRVGASGICQLLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYP 3762
             +   SGICQLLEKK+G+FRQKMMGKRVN ACRSVISPDPY+AVNEIGIPP FAL+L YP
Sbjct: 407  SQKDGSGICQLLEKKEGLFRQKMMGKRVNHACRSVISPDPYIAVNEIGIPPCFALKLIYP 466

Query: 3761 ERVTPWNIGKLRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXXXXRKLPSSRGVVT 3582
            ERVTPWN+ KLR+AIING ++HPGATHY+DK S   L             KL SSRG  T
Sbjct: 467  ERVTPWNVEKLREAIINGPDVHPGATHYSDKLSTVKLPSSVKERTAIAN-KLLSSRGATT 525

Query: 3581 QPGKSGDIDFEGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCS 3402
            + GK+ DI+FEGK+V R ++DGD+VLVNRQPTLHKPS+MAH+VRVLKGEKTLR+HYANCS
Sbjct: 526  ELGKTCDINFEGKVVYRQMRDGDVVLVNRQPTLHKPSLMAHIVRVLKGEKTLRLHYANCS 585

Query: 3401 TYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDHIISAVLLTK 3222
            TYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQY  PS G+P+RALIQDHI+S+VLLTK
Sbjct: 586  TYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYARPSNGDPLRALIQDHIVSSVLLTK 645

Query: 3221 KDTFLSRDEYSQLLYXXXXXXXXXXXXSCKPGQKVCLVSED-EMQTLQPAILKPEPLWTG 3045
            +DTFL +D ++QLL+            S K G+KV + + D E+ T+ PAILKP PLWTG
Sbjct: 646  RDTFLDKDLFNQLLFSSGVTDMVLSSFSGKSGKKVTISASDAELLTVMPAILKPVPLWTG 705

Query: 3044 KQVITAVLNHITKGHPPFTVEKEGKIPREYFGSNTGE-----DDLSVERKTSXXXXXXXX 2880
            KQVIT VLN ITKGHPPFTVEK  K+P ++F   + E      DL+ ++           
Sbjct: 706  KQVITTVLNLITKGHPPFTVEKATKLPVDFFKCRSREVKPNTGDLTKKKDIDESWKQDLN 765

Query: 2879 XXXXEILYVSKNDLVRGVIDKAQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMH 2700
                  L + KN+ V GVIDKAQF  +G+VHTV ELYG   AG LLS FSRLFT FLQ+H
Sbjct: 766  EDK---LLIRKNEFVCGVIDKAQFADFGMVHTVHELYGSNAAGNLLSVFSRLFTAFLQIH 822

Query: 2699 GFTCGVDDLLILKYRDIERKQELEKCQDFGXXXXXXXXXXXXKRKDIRNVYSKFLGIKYD 2520
            GFTCGVDDL+ILK  D ER ++L++C+  G                   V  K  GI  D
Sbjct: 823  GFTCGVDDLIILKDMDEERTKQLQECEKVG-----------------ERVLRKTFGIDVD 865

Query: 2519 -EIDPKELPNEIEYGICRYGEVGTTSLDNEMRKHLSNASTE-VNKDLFVKGLLKPFPKNC 2346
             +IDP+++ + IE  +   GE    SLD  +   L+  S++ V  DL   GLLK   KNC
Sbjct: 866  RQIDPQDMRSRIERILYEDGESALASLDRSIVNDLNQCSSKGVMNDLLSDGLLKTPGKNC 925

Query: 2345 FSLMTTTGAKGGMVNFQQVSSLLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISD 2166
             SLMT +GAKG  VNFQQ+SS LGQQDLEGKRVPRMVSGKTLP F PWDWSPRAGGFISD
Sbjct: 926  ISLMTISGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFISD 985

Query: 2165 NFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGS 1986
             FL+GL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE LKV YD TVRDADGS
Sbjct: 986  RFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVNYDCTVRDADGS 1045

Query: 1985 IIQFSYGEDGVDVHQTSFISKFKALEENHQILREKFLHH-LDKSNSYIEHLPPKLEKKAR 1809
            IIQF YGEDGVDVH++SFI KFK L  N  ++ ++     L  S+SYI  LP  L+K A 
Sbjct: 1046 IIQFQYGEDGVDVHRSSFIGKFKELTVNQDMVLQRCSEDMLSGSSSYISDLPISLKKDAE 1105

Query: 1808 EFIKGVPEKK----KHIDDEDFMKLMNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNT 1641
            +F++ +P  +    K +  E+ +KL+  KYF SLAQPGEPVGVLAAQSVGEPSTQMTLNT
Sbjct: 1106 KFVEAMPMNERIASKFVRQEELLKLVKSKYFESLAQPGEPVGVLAAQSVGEPSTQMTLNT 1165

Query: 1640 FHLAGRGEMNVTLGIPRLQEILMTASVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTV 1461
            FHLAGRGEMNVTLGIPRLQEILMTA+ +IKTPIMTCPLLK K T E A  +   L+K+TV
Sbjct: 1166 FHLAGRGEMNVTLGIPRLQEILMTAAADIKTPIMTCPLLKGK-TKEDANDITDKLRKITV 1224

Query: 1460 GDITENIYVGLRHHLYSR-----VYTLAMNLYRPA---SNSGISLKDYKETLTIQFVREL 1305
             DI +++ + +  +   +     ++ L +NLY+P     N+ I+ +D++ET+ + F+R+L
Sbjct: 1225 ADIIKDMELSVVPYTIHKNDICSIHKLKINLYKPEHYPKNTDITEEDWEETMKVVFLRKL 1284

Query: 1304 EDAIHNQINAIKRMHGIQAFDQPSQSKASKETDEE--VSGMRGEENDDDGDVSXXXXXXX 1131
            EDAI   +  + RM GI+ F Q +   A  ETD +  +SG + E+ DDDG+ +       
Sbjct: 1285 EDAIEIHMKMLHRMRGIRNFVQDTSPTAGNETDNDNSISGKQTED-DDDGEGTEVDDLGS 1343

Query: 1130 XXXXAQKRKRQSTDEVDYDDASEDEPNEGVLSTGFEQEKENGNCLDTEMDGDDVSRNSQD 951
                 QKRK+Q+TDE+DY++ SEDE NE    +G E  +     +D E +  +VS+    
Sbjct: 1344 DA---QKRKKQATDEMDYEENSEDETNEPSSISGVEDPE-----IDNENEDVEVSKEGTP 1395

Query: 950  AEMDGDDDASNLPSESQSPXXXXXXXXXXXXXXXXXXRQLSRKDADRSIEVXXXXXXXXX 771
             +        N+  +S+                          D DR I V         
Sbjct: 1396 EQQKEVKKVKNVKQQSKKKRRKYVGA-----------------DEDRHIFVKGEGEKFEV 1438

Query: 770  XXXXXXTDEDPHILLQQVALNVAKKVYIKSAGDIEHCQKIDCSNGQVLCHSN-------V 612
                     +PHILL Q+A   A+KVYI+++G IE C   +C + QV+ H +       +
Sbjct: 1439 HFKFPT--SEPHILLAQIAQKTAQKVYIQNSGKIERCTVANCGDPQVIYHGDDPKERREI 1496

Query: 611  SAEEKKRNSALLTAGVDFKAFWEMQENLDVNCIYSNNIHSMLKTYGVEAARESIIREVSH 432
            S +EKK + AL  +GVDF A WE Q+ LDV  +YSN+IH ML  +GVEAARE+IIRE++H
Sbjct: 1497 SNDEKKASPALHASGVDFPALWEFQDKLDVRYLYSNSIHDMLNIFGVEAARETIIREINH 1556

Query: 431  VFNSYGITVDIRHLTLIADFMTHSGGYNPMSRSGGIAESVSPFSKITFETASKFIVEAAL 252
            VF SYGI+V IRHL LIAD+MT SGGY PMSR GGIAES SPF ++TFETA+KFIV+AA 
Sbjct: 1557 VFKSYGISVSIRHLNLIADYMTFSGGYRPMSRMGGIAESTSPFCRMTFETATKFIVQAAT 1616

Query: 251  YGLTDDLESPSARVCLGLPVKVGTGCFDVMQKVDI 147
            YG  D LE+PSAR+CLGLP   GTGCFD+MQ+V++
Sbjct: 1617 YGEKDTLETPSARICLGLPALSGTGCFDLMQRVEL 1651


>ref|NP_191325.1| nuclear RNA polymerase A1 [Arabidopsis thaliana]
            gi|4678281|emb|CAB41189.1| DNA-directed RNA polymerase I
            190K chain-like protein [Arabidopsis thaliana]
            gi|332646163|gb|AEE79684.1| nuclear RNA polymerase A1
            [Arabidopsis thaliana]
          Length = 1670

 Score = 1640 bits (4247), Expect = 0.0
 Identities = 917/1716 (53%), Positives = 1145/1716 (66%), Gaps = 37/1716 (2%)
 Frame = -3

Query: 5183 GATESIEAVRFGFFTDEEVRKHSFVQSTSADLLHGVV--PAXXXXXXXXXXXXXDRAPCK 5010
            GA++ +E+VRF F T+++VRKHSF++ TS  +LH  V  P              D+  C 
Sbjct: 22   GASQVVESVRFSFMTEQDVRKHSFLKVTSP-ILHDNVGNPFPGGLYDLKLGPKDDKQACN 80

Query: 5009 SCGQSG-RCPGHCGHVALILPVYNPLLFNMLYAVLQRTCFFCHHFRAIRSKVENCISQLE 4833
            SCGQ    CPGHCGH+ L+ P+Y+PLLFN+L+  LQR CFFCHHF A    VE  +SQL+
Sbjct: 81   SCGQLKLACPGHCGHIELVFPIYHPLLFNLLFNFLQRACFFCHHFMAKPEDVERAVSQLK 140

Query: 4832 LIMKGNVIGAKNLDSLYLEGHSNQEDSDGSHVSSTVSLGAQYHSLEHSKQQKWTSLQLTE 4653
            LI+KG+++ AK L+S       + ++S  S V++  S   +   +E    Q+WTSLQ  E
Sbjct: 141  LIIKGDIVSAKQLESNTPTKSKSSDESCESVVTTDSSEECEDSDVE---DQRWTSLQFAE 197

Query: 4652 AMSILDNFLKPKHVDCKNCGAKNPKITKPTFGWFKT-SMPDAHARANRIKGCKLKGSFVG 4476
              ++L NF++     C  C   NPK+ KP FGW +  +M D+   AN I+G KLK S   
Sbjct: 198  VTAVLKNFMRLSSKSCSRCKGINPKLEKPMFGWVRMRAMKDSDVGANVIRGLKLKKS--- 254

Query: 4475 EIEEDPSSDIENADNTSPWGNGSDTSEITPINET----KRKKNKRGQAHPELLKESFSGS 4308
                  +S +EN D       G D S I  ++E     K  + K  +   E  + +    
Sbjct: 255  ------TSSVENPD-------GFDDSGIDALSEVEDGDKETREKSTEVAAEFEEHNSKRD 301

Query: 4307 LLPSEVRALLKLLWENEFELCSFICDIQRDSSDVLKDNAGYSMFFLDTILVPPIKFRPPS 4128
            LLPSEVR +LK LW+NE E CSFI D+ +  S+ +     YSMFFL+++LVPP KFRPP+
Sbjct: 302  LLPSEVRNILKHLWQNEHEFCSFIGDLWQSGSEKID----YSMFFLESVLVPPTKFRPPT 357

Query: 4127 KGGDSVMEHPQTVLLGKVIEANMRLGNAYESKSGHSKTVVDRWIALQQSVNVSFDSKTMG 3948
             GGDSVMEHPQTV L KVIE+N  LGNA  +K   SK V+ RW  LQ+SVNV FDSKT  
Sbjct: 358  TGGDSVMEHPQTVGLNKVIESNNILGNACTNKLDQSK-VIFRWRNLQESVNVLFDSKTAT 416

Query: 3947 QGQRVGASGICQLLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLT 3768
               +  +SGICQLLEKK+G+FRQKMMGKRVN ACRSVISPDPY+AVN+IGIPP FAL+LT
Sbjct: 417  VQSQRDSSGICQLLEKKEGLFRQKMMGKRVNHACRSVISPDPYIAVNDIGIPPCFALKLT 476

Query: 3767 YPERVTPWNIGKLRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXXXXRKLPSSRGV 3588
            YPERVTPWN+ KLR+AIING +IHPGATHY+DKSS   L             KL SSRG 
Sbjct: 477  YPERVTPWNVEKLREAIINGPDIHPGATHYSDKSSTMKLPSTEKARRAIAR-KLLSSRGA 535

Query: 3587 VTQPGKSGDIDFEGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYAN 3408
             T+ GK+ DI+FEGK V RH++DGDIVLVNRQPTLHKPS+MAH VRVLKGEKTLR+HYAN
Sbjct: 536  TTELGKTCDINFEGKTVHRHMRDGDIVLVNRQPTLHKPSLMAHKVRVLKGEKTLRLHYAN 595

Query: 3407 CSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDHIISAVLL 3228
            CSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQY  PS GEP+RALIQDHI+S+VLL
Sbjct: 596  CSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYARPSNGEPLRALIQDHIVSSVLL 655

Query: 3227 TKKDTFLSRDEYSQLLYXXXXXXXXXXXXSCKPGQKVCLVSED-EMQTLQPAILKPEPLW 3051
            TK+DTFL +D ++QLL+            S + G+KV + + D E+ T+ PAILKP PLW
Sbjct: 656  TKRDTFLDKDHFNQLLFSSGVTDMVLSTFSGRSGKKVMVSASDAELLTVTPAILKPVPLW 715

Query: 3050 TGKQVITAVLNHITKGHPPFTVEKEGKIPREYFGSNTGE-----DDLSVERKTSXXXXXX 2886
            TGKQVITAVLN ITKGHPPFTVEK  K+P ++F   + E      DL+ +++        
Sbjct: 716  TGKQVITAVLNQITKGHPPFTVEKATKLPVDFFKCRSREVKPNSGDLTKKKEIDESWKQN 775

Query: 2885 XXXXXXEILYVSKNDLVRGVIDKAQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQ 2706
                    L++ KN+ V GVIDKAQF  YGLVHTV ELYG   AG LLS FSRLFTVFLQ
Sbjct: 776  LNEDK---LHIRKNEFVCGVIDKAQFADYGLVHTVHELYGSNAAGNLLSVFSRLFTVFLQ 832

Query: 2705 MHGFTCGVDDLLILKYRDIERKQELEKCQDFGXXXXXXXXXXXXKRKDIRNVYSKFLGIK 2526
             HGFTCGVDDL+ILK  D ER ++L++C++ G                   V  K  GI 
Sbjct: 833  THGFTCGVDDLIILKDMDEERTKQLQECENVG-----------------ERVLRKTFGID 875

Query: 2525 YD-EIDPKELPNEIEYGICRYGEVGTTSLDNEMRKHLSNASTE-VNKDLFVKGLLKPFPK 2352
             D +IDP+++ + IE  +   GE    SLD  +  +L+  S++ V  DL   GLLK   +
Sbjct: 876  VDVQIDPQDMRSRIERILYEDGESALASLDRSIVNYLNQCSSKGVMNDLLSDGLLKTPGR 935

Query: 2351 NCFSLMTTTGAKGGMVNFQQVSSLLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFI 2172
            NC SLMT +GAKG  VNFQQ+SS LGQQDLEGKRVPRMVSGKTLP F PWDWSPRAGGFI
Sbjct: 936  NCISLMTISGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFI 995

Query: 2171 SDNFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDAD 1992
            SD FL+GL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE LKV YD TVRDAD
Sbjct: 996  SDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVNYDCTVRDAD 1055

Query: 1991 GSIIQFSYGEDGVDVHQTSFISKFKALEENHQILREKFLHH-LDKSNSYIEHLPPKLEKK 1815
            GSIIQF YGEDGVDVH++SFI KFK L  N  ++ +K     L  ++SYI  LP  L+K 
Sbjct: 1056 GSIIQFQYGEDGVDVHRSSFIEKFKELTINQDMVLQKCSEDMLSGASSYISDLPISLKKG 1115

Query: 1814 AREFIKGVPEKK----KHIDDEDFMKLMNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTL 1647
            A +F++ +P  +    K +  E+ +KL+  K+F+SLAQPGEPVGVLAAQSVGEPSTQMTL
Sbjct: 1116 AEKFVEAMPMNERIASKFVRQEELLKLVKSKFFASLAQPGEPVGVLAAQSVGEPSTQMTL 1175

Query: 1646 NTFHLAGRGEMNVTLGIPRLQEILMTASVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKV 1467
            NTFHLAGRGEMNVTLGIPRLQEILMTA+ NIKTPIMTCPLLK K T E A  +   L+K+
Sbjct: 1176 NTFHLAGRGEMNVTLGIPRLQEILMTAAANIKTPIMTCPLLKGK-TKEDANDITDRLRKI 1234

Query: 1466 TVGDITENIYVG-LRHHLYSR----VYTLAMNLYRP---ASNSGISLKDYKETLTIQFVR 1311
            TV DI +++ +  + + +Y      ++ L +NLY+P     ++ I+ +D++ET+   F+R
Sbjct: 1235 TVADIIKSMELSVVPYTVYENEVCSIHKLKINLYKPEHYPKHTDITEEDWEETMRAVFLR 1294

Query: 1310 ELEDAIHNQINAIKRMHGIQAFDQPSQSKASKETDEEVSGMRGEENDDDG-DVSXXXXXX 1134
            +LEDAI   +  + R+ GI   +  +   A  ETD + S + G++N+DDG D        
Sbjct: 1295 KLEDAIETHMKMLHRIRGIH--NDVTGPIAGNETDNDDS-VSGKQNEDDGDDDGEGTEVD 1351

Query: 1133 XXXXXAQKRKRQSTDEVDYDDASEDEPNEGVLSTGFEQEKENGNCLDTEMDGDDVSRNSQ 954
                 AQK+K+Q TDE+DY++ SEDE NE    +G E         D EMD +     ++
Sbjct: 1352 DLGSDAQKQKKQETDEMDYEENSEDETNEPSSISGVE---------DPEMDSE-----NE 1397

Query: 953  DAEMDGDDDASNLPSESQSPXXXXXXXXXXXXXXXXXXRQLSRKDADRSIEVXXXXXXXX 774
            D E+   +D      ES  P                  R+  R  +DR I V        
Sbjct: 1398 DTEV-SKEDTPEPQEESMEPQKEVKGVKNVKEQSKKKRRKFVRAKSDRHIFV--KGEGEK 1454

Query: 773  XXXXXXXTDEDPHILLQQVALNVAKKVYIKSAGDIEHCQKIDCSNGQVLCHSN------- 615
                     +DPHILL Q+A   A+KVYI+++G IE C   +C + QV+ H +       
Sbjct: 1455 FEVHFKFATDDPHILLAQIAQQTAQKVYIQNSGKIERCTVANCGDPQVIYHGDNPKERRE 1514

Query: 614  VSAEEKKRNSALLTAGVDFKAFWEMQENLDVNCIYSNNIHSMLKTYGVEAARESIIREVS 435
            +S +EKK + AL  +GVDF A WE Q+ LDV  +YSN+IH ML  +GVEAARE+IIRE++
Sbjct: 1515 ISNDEKKASPALHASGVDFPALWEFQDKLDVRYLYSNSIHDMLNIFGVEAARETIIREIN 1574

Query: 434  HVFNSYGITVDIRHLTLIADFMTHSGGYNPMSRSGGIAESVSPFSKITFETASKFIVEAA 255
            HVF SYGI+V IRHL LIAD+MT SGGY PMSR GGIAES SPF ++TFETA+KFIV+AA
Sbjct: 1575 HVFKSYGISVSIRHLNLIADYMTFSGGYRPMSRMGGIAESTSPFCRMTFETATKFIVQAA 1634

Query: 254  LYGLTDDLESPSARVCLGLPVKVGTGCFDVMQKVDI 147
             YG  D LE+PSAR+CLGLP   GTGCFD+MQ+V++
Sbjct: 1635 TYGEKDTLETPSARICLGLPALSGTGCFDLMQRVEL 1670


>ref|XP_002876429.1| hypothetical protein ARALYDRAFT_486216 [Arabidopsis lyrata subsp.
            lyrata] gi|297322267|gb|EFH52688.1| hypothetical protein
            ARALYDRAFT_486216 [Arabidopsis lyrata subsp. lyrata]
          Length = 1678

 Score = 1634 bits (4231), Expect = 0.0
 Identities = 908/1713 (53%), Positives = 1145/1713 (66%), Gaps = 34/1713 (1%)
 Frame = -3

Query: 5183 GATESIEAVRFGFFTDEEVRKHSFVQSTSADLLHGV-VPAXXXXXXXXXXXXXDRAPCKS 5007
            GA++ +E+VRF F T+++VRKHSF++ TS  LL  V  P              D+  C +
Sbjct: 22   GASQVVESVRFSFMTEQDVRKHSFLKVTSPILLDNVGEPYPGGLYDPKLGPIEDKKACDT 81

Query: 5006 CGQSG-RCPGHCGHVALILPVYNPLLFNMLYAVLQRTCFFCHHFRAIRSKVENCISQLEL 4830
            CGQ    CPGHCGH+ L+ P+Y+PLLFN+LY  LQRTCF CHHF A    VE  +SQL+L
Sbjct: 82   CGQLNLACPGHCGHIELVYPIYHPLLFNLLYNFLQRTCFICHHFMAKPYDVERAVSQLKL 141

Query: 4829 IMKGNVIGAKNLDSLYLEGHSNQEDSDGSHVSSTVSLGAQYHSLEHSKQQKWTSLQLTEA 4650
            I+KG+++ AK L+S       + + S  S V++  S G +   +E    Q+WTSLQ  E 
Sbjct: 142  IIKGDIVSAKQLESNTPTKSDSSDVSCESGVTTDSSEGCEDSDME---DQRWTSLQFAEV 198

Query: 4649 MSILDNFLKPKHVDCKNCGAKNPKITKPTFGWFKT-SMPDAHARANRIKGCKLKGSFVGE 4473
             +++ NF++     C  C A NP++ KP FGW +  +M  +   AN I+G KLK S    
Sbjct: 199  TAVMKNFMRLSSKSCNRCKAVNPQLEKPMFGWVRMKAMKGSDIVANVIRGLKLKKS---- 254

Query: 4472 IEEDPSSDIENADNTSPWGNGSDTSEITPINETKRKKNKRGQAHPELLKESFSGSLLPSE 4293
                 +S +EN D+    G  +  SE+   ++  R+K+       E    S    LLP+E
Sbjct: 255  -----TSSVENPDDFDDSGIDA-LSEVEDGDKETREKSTEVVKEFEEHNNSSKRDLLPTE 308

Query: 4292 VRALLKLLWENEFELCSFICDIQRDSSDVLKDNAGYSMFFLDTILVPPIKFRPPSKGGDS 4113
            VR +LK LWENE + CSFI D+ +  S+ +     YSMFFL+++LVPPIKFRP +KGGDS
Sbjct: 309  VREILKDLWENEHDFCSFIGDLWQSGSEKID----YSMFFLESVLVPPIKFRPSTKGGDS 364

Query: 4112 VMEHPQTVLLGKVIEANMRLGNAYESKSGHSKTVVDRWIALQQSVNVSFDSKTMG-QGQR 3936
            VMEHPQTV L KV+ +N++LGNA  +K   SK ++ RW+ LQ+SVNV FDSKT   Q QR
Sbjct: 365  VMEHPQTVGLNKVLGSNIQLGNACTNKLDQSK-IISRWMNLQESVNVLFDSKTATVQSQR 423

Query: 3935 VGASGICQLLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPER 3756
             G SGICQLLEKK+G+FRQKMMGKRVN ACRSVISPDPY+AVN+IGIPP FAL+LTYPER
Sbjct: 424  EG-SGICQLLEKKEGLFRQKMMGKRVNHACRSVISPDPYIAVNDIGIPPCFALKLTYPER 482

Query: 3755 VTPWNIGKLRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXXXXRKLPSSRGVVTQP 3576
            VTPWN+ KLR+AIING +IHPGATHY+DK S   L             KL SSRG  T+ 
Sbjct: 483  VTPWNVEKLREAIINGPDIHPGATHYSDKLSTVKLPSTEKARRAIAR-KLLSSRGATTEL 541

Query: 3575 GKSGDIDFEGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTY 3396
            GK+ DI+FEGK V RH++DGD+VLVNRQPTLHKPS+MAH+VRVL+GEKTLR+HYANCSTY
Sbjct: 542  GKTCDINFEGKTVHRHMRDGDVVLVNRQPTLHKPSLMAHIVRVLRGEKTLRLHYANCSTY 601

Query: 3395 NADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQDHIISAVLLTKKD 3216
            NADFDGDEMNVHFPQDEISRAEAYNIVNANNQY  PS G+P+RALIQDHI+S+VLLTK+D
Sbjct: 602  NADFDGDEMNVHFPQDEISRAEAYNIVNANNQYARPSNGDPLRALIQDHIVSSVLLTKRD 661

Query: 3215 TFLSRDEYSQLLYXXXXXXXXXXXXSCKPGQKVCLVSED-EMQTLQPAILKPEPLWTGKQ 3039
            TFL +D ++QLL+            S + G+KV + + D E+ T+ PAILKP PLWTGKQ
Sbjct: 662  TFLDKDHFNQLLFSSGVTDMVLSSFSGRSGKKVMVSASDAELLTVTPAILKPVPLWTGKQ 721

Query: 3038 VITAVLNHITKGHPPFTVEKEGKIPREYFGSNTGE-----DDLSVERKTSXXXXXXXXXX 2874
            VITAVLN ITKGHPPFTVEK  K+P ++F   + E      DL+ ++K            
Sbjct: 722  VITAVLNQITKGHPPFTVEKATKLPVDFFKCRSREVKPNSGDLTKKKKIDESWKQNLNED 781

Query: 2873 XXEILYVSKNDLVRGVIDKAQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGF 2694
                L + KN+ V GVIDKAQF  YGLVHTV ELYG   AG LLS FSRLFTVFLQ+HGF
Sbjct: 782  K---LLIRKNEFVCGVIDKAQFADYGLVHTVHELYGSNAAGNLLSVFSRLFTVFLQIHGF 838

Query: 2693 TCGVDDLLILKYRDIERKQELEKCQDFGXXXXXXXXXXXXKRKDIRNVYSKFLGIKYD-E 2517
            TCGVDDL+ILK  D ER ++L++C++ G                   V  K  GI  D +
Sbjct: 839  TCGVDDLIILKDMDEERTKQLQECENVG-----------------ERVLRKTFGIDVDVQ 881

Query: 2516 IDPKELPNEIEYGICRYGEVGTTSLDNEMRKHLSNASTE-VNKDLFVKGLLKPFPKNCFS 2340
            IDP+++ + IE  +   GE    SLD  +   L+  S++ V  DL   GLLK    NC S
Sbjct: 882  IDPQDMRSRIERILYEDGESALASLDRSIVNDLNQCSSKGVMNDLLSDGLLKTPGMNCIS 941

Query: 2339 LMTTTGAKGGMVNFQQVSSLLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNF 2160
            LMT +GAKG  VNFQQ+SS LGQQDLEGKRVPRMVSGKTLP F PWDWSPRAGGFISD F
Sbjct: 942  LMTISGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFISDRF 1001

Query: 2159 LTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSII 1980
            L+GL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE LK+ YD TVRDADGSII
Sbjct: 1002 LSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKINYDCTVRDADGSII 1061

Query: 1979 QFSYGEDGVDVHQTSFISKFKALEENHQILREKFLHH-LDKSNSYIEHLPPKLEKKAREF 1803
            QF YGEDGVDVH++SFI KFK L  N  ++ ++     L  +NSYI  LP  L+  A +F
Sbjct: 1062 QFQYGEDGVDVHRSSFIEKFKELAINQDMVLQRCSEDMLSGANSYISDLPISLKNGAEKF 1121

Query: 1802 IKGVPEKK----KHIDDEDFMKLMNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFH 1635
            ++ +P  +    K +  E+ +KL+  K+F+SLAQPGEPVGVLAAQSVGEPSTQMTLNTFH
Sbjct: 1122 VEAMPMNERIASKFVRQEELLKLVKSKFFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFH 1181

Query: 1634 LAGRGEMNVTLGIPRLQEILMTASVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGD 1455
            LAGRGEMNVTLGIPRLQEILMTA+ +IKTPIMTCPLLK K T E A  +   L+K+TV D
Sbjct: 1182 LAGRGEMNVTLGIPRLQEILMTAAADIKTPIMTCPLLKGK-TKEDANDITGKLRKITVAD 1240

Query: 1454 ITENI------YVGLRHHLYSRVYTLAMNLYRPA---SNSGISLKDYKETLTIQFVRELE 1302
            I +++      Y   ++ + S ++ L +NLY+P     ++ I+ KD++ET+T+ F+R+LE
Sbjct: 1241 IIKSMDLSVVPYTVYKNEVCS-IHKLKINLYKPEHYPKHTDITEKDWEETMTVVFLRKLE 1299

Query: 1301 DAIHNQINAIKRMHGIQAFDQPSQSKASKETDEEVSGMRGEENDDDGDVSXXXXXXXXXX 1122
            DAI   +  + R+ GI     P   +A  ETD + S + G++N DDGD            
Sbjct: 1300 DAIEIHMKMLHRIRGICNDKGP---EAGNETDNDDS-VSGKQNKDDGDDDGEGTEVDDLG 1355

Query: 1121 XA-QKRKRQSTDEVDYDDASEDEPNEGVLSTGFEQEKENGNCLDTEMDGDDVSRNSQDAE 945
               QK+K+Q TDE+DY++ SEDE NE    +G E  + +    D E+  +D     ++A+
Sbjct: 1356 SDAQKQKKQVTDEMDYEENSEDETNEPSSISGVEDPEMDSENEDAEVSKEDTPEPQEEAD 1415

Query: 944  MDGDDDASNLPSESQSPXXXXXXXXXXXXXXXXXXRQLSRKDADRSIEVXXXXXXXXXXX 765
            +  +        E+  P                  R+     +DR I V           
Sbjct: 1416 VSKE--------ETMEPQKEVKAVKNVKEQSKKKRRKFVGATSDRHIFVRGEGEKFEVHF 1467

Query: 764  XXXXTDEDPHILLQQVALNVAKKVYIKSAGDIEHCQKIDCSNGQVLCHSN-------VSA 606
                  +DPHILL Q+A   A+KVYI+ +G IE C   +C + QV+ H +       +S 
Sbjct: 1468 QFAT--DDPHILLAQIAQKTAQKVYIQDSGKIERCTVANCGDPQVIYHGDNPKERREISN 1525

Query: 605  EEKKRNSALLTAGVDFKAFWEMQENLDVNCIYSNNIHSMLKTYGVEAARESIIREVSHVF 426
            +EKK + AL  +GVDF A WE Q+ LDV  +YSN+IH ML  +GVEAARE+IIRE++HVF
Sbjct: 1526 DEKKASPALHASGVDFPALWEFQDKLDVRYLYSNSIHDMLNVFGVEAARETIIREINHVF 1585

Query: 425  NSYGITVDIRHLTLIADFMTHSGGYNPMSRSGGIAESVSPFSKITFETASKFIVEAALYG 246
             SYGI+V IRHL LIAD+MT SGGY PMSR GGIAES SPF ++TFETA+KFIV+AA YG
Sbjct: 1586 KSYGISVSIRHLNLIADYMTFSGGYRPMSRMGGIAESTSPFCRMTFETATKFIVQAATYG 1645

Query: 245  LTDDLESPSARVCLGLPVKVGTGCFDVMQKVDI 147
              D LE+PSAR+CLGLP   GTGCFD+MQ+V++
Sbjct: 1646 EKDTLETPSARICLGLPALSGTGCFDLMQRVEL 1678


>gb|EYU39881.1| hypothetical protein MIMGU_mgv1a000122mg [Mimulus guttatus]
          Length = 1719

 Score = 1627 bits (4212), Expect = 0.0
 Identities = 907/1763 (51%), Positives = 1152/1763 (65%), Gaps = 82/1763 (4%)
 Frame = -3

Query: 5189 TEGATESIEAVRFGFFTDEEVRKHSFVQSTSADLLHGV-VPAXXXXXXXXXXXXXDRAPC 5013
            TE  TE +EAVRFGFFTDEE RKHS V+ T+ +L+  +  P              +R+ C
Sbjct: 4    TECTTEVVEAVRFGFFTDEEARKHSLVKITNPNLVDILGKPCPGGLYDPAMGSLDERSIC 63

Query: 5012 KSCGQSGR-CPGHCGHVALILPVYNPLLFNMLYAVLQRTCFFCHHFRAIRSKVENCISQL 4836
            +SCGQ    C GHCGH+ L+   YNPLLFN L  +L +TC +C  F +   + EN +SQL
Sbjct: 64   ESCGQRAYLCNGHCGHIELVSVAYNPLLFNTLSNILNKTCLYCLQFISSAEETENFVSQL 123

Query: 4835 ELIMKGNVIGAKNL----------DSLYL---EGHSNQEDSDGSHVSSTVSLGAQYHSLE 4695
            ELI KG++ GAK L            +++   +    +EDS GSH+S +  L    +  +
Sbjct: 124  ELIRKGDLAGAKKLALGSSFKGKKKMVFVSTDDDTDEREDSQGSHMSHSAVLSDGENHFK 183

Query: 4694 HSKQQKWTSLQLTEAMSILDNFLKPKHVDCKNCGAKNPKITKPTFGWFKTS-MPDAHA-R 4521
              +Q  W+S QL EA+S+++ +L+ K   C NC  + PKI+KPTFGWF+      A A R
Sbjct: 184  DDEQASWSSAQLAEAISVMNEYLRRKGKKCMNCEMRCPKISKPTFGWFQVGGATSAKAIR 243

Query: 4520 ANRIKGCKLKGSFVGEIEEDPSSDIENADNTSPWGNGSDTSE----ITPINETKRKKNKR 4353
             N I+  KL  S     E++ SS++ NA + S   + S+T E    I   N TK+ K K 
Sbjct: 244  ENVIRSHKLDESDSDGGEDNFSSEVVNAGDHS-MNDDSETVESNSFIATSNSTKKSKKKG 302

Query: 4352 GQAHPELLKES------FSGSLLPSEVRALLKLLWENEFELCSFICDIQRDSSDVLKDNA 4191
                 +L   S       SG LLPS+VR +LKLLWE E   CS+I DIQR       +  
Sbjct: 303  VNRAKKLNPGSGDPNFYLSGPLLPSQVRDILKLLWEKEASFCSYISDIQRQKCKPFGNKT 362

Query: 4190 GYSMFFLDTILVPPIKFRPPSKGGDSVMEHPQTVLLGKVIEANMRLGNAYESKSGHSKTV 4011
            GYSMFFL+T+LVPPI+FRPP+KGGDSVMEHPQTVLLGKV+++N+ LGNA+ +       +
Sbjct: 363  GYSMFFLETVLVPPIRFRPPAKGGDSVMEHPQTVLLGKVLQSNIALGNAHVN--AEKSKI 420

Query: 4010 VDRWIALQQSVNVSFDSKTMGQ-GQRVGASGICQLLEKKDGIFRQKMMGKRVNFACRSVI 3834
            + RW+ LQQS+NV FDSKT     Q+   +GICQ LEKK+GIFRQKMMGKRVNFACRSVI
Sbjct: 421  ISRWMELQQSINVYFDSKTATSLAQKDSIAGICQFLEKKEGIFRQKMMGKRVNFACRSVI 480

Query: 3833 SPDPYLAVNEIGIPPYFALRLTYPERVTPWNIGKLRDAIINGSEIHPGATHYADKSSVDL 3654
            SPDPYLAVNEIGIPPYFAL+LTYPERVTPWN  KLR A++NG +IHPGAT Y D  ++  
Sbjct: 481  SPDPYLAVNEIGIPPYFALKLTYPERVTPWNAAKLRGAVVNGPDIHPGATTYVDSVTIVK 540

Query: 3653 LXXXXXXXXXXXXRKLPSSRGVVTQPGKSGDIDFEGKIVSRHLQDGDIVLVNRQPTLHKP 3474
            L             KLPSSRGVVTQ GK  D++FEGK V RHLQDGDIVLVNRQPTLHKP
Sbjct: 541  LPPSQKMRVAISR-KLPSSRGVVTQSGKFDDLEFEGKTVHRHLQDGDIVLVNRQPTLHKP 599

Query: 3473 SIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYV 3294
            SIMAHVVRVL GE+TLRMHYANCS+YNADFDGDE+NVHFPQDEISRAEAYNIVNAN QY+
Sbjct: 600  SIMAHVVRVLHGERTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYI 659

Query: 3293 VPSRGEPIRALIQDHIISAVLLTKKDTFLSRDEYSQLLYXXXXXXXXXXXXSCKPGQKVC 3114
            VP++G+ +R LIQDHI+ AVLLT K+TF++R E++QLLY                 +KV 
Sbjct: 660  VPTKGDTVRGLIQDHIVGAVLLTMKNTFVNRSEFNQLLYGSGVFASGPGSLPKNNSRKVT 719

Query: 3113 LV-SEDEMQTLQPAILKPEPLWTGKQVITAVLNHITKGHPPFTVEKEGKIPREYFGSNT- 2940
            L+ +E  ++++ PAI KPEPLWTGKQVITA+LNHIT+G  PFTVE +GKIP+ YF  N+ 
Sbjct: 720  LIDTEGVVESVLPAIWKPEPLWTGKQVITALLNHITRGCAPFTVENQGKIPKNYFFGNSY 779

Query: 2939 --GEDDLSVERKTSXXXXXXXXXXXXEILYVSKNDLVRGVIDKAQFGSYGLVHTVQELYG 2766
              GE+D     + +              L V KN+LVRGVIDKAQFG +GLVHTVQELYG
Sbjct: 780  TRGEEDEDQNAEHN--------------LLVWKNELVRGVIDKAQFGKFGLVHTVQELYG 825

Query: 2765 PKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYRDIERKQELEKCQDFGXXXXXXXX 2586
              +AGI LSA SR+FT+FLQ+HGFTCGVDDL+IL   D +RK++LE  +D G        
Sbjct: 826  ASSAGIFLSALSRVFTLFLQIHGFTCGVDDLIILPDYDDQRKEKLEG-EDVGEV------ 878

Query: 2585 XXXXKRKDIRNVYSKFLGIKYDEIDPKELPNEIEYGICRYGEVGTTSLDNEMRKHLSNAS 2406
                       V+  F+  K  +I P EL  EIE  IC   E  T SLD +M+  L++  
Sbjct: 879  -----------VHCDFVKFKPGQIGPDELQLEIEKVICTDRESATASLDMKMKNKLNSKL 927

Query: 2405 T----EVNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVNFQQVSSLLGQQDLEGKRVPRM 2238
            T    ++ K L   GLLKPFPKNC S+MTTTGAKG  VNFQQ+S+ LGQQ+LEGKRVPRM
Sbjct: 928  TREGSQILKHLLTAGLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRM 987

Query: 2237 VSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQ 2058
            VSGKTLPSF PWD++ RAGGFI+D FLTGL PQEYYFHCMAGREGLVDTAVKTSRSGYLQ
Sbjct: 988  VSGKTLPSFPPWDFTSRAGGFITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQ 1047

Query: 2057 RCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQTSFISKFKALEENHQILREKF 1878
            RCL+KNLE LKVCYD+TVRDADGSI+QF YGEDG+DVH+TSF++ FKAL++N + + +KF
Sbjct: 1048 RCLVKNLESLKVCYDYTVRDADGSIVQFYYGEDGIDVHRTSFLNNFKALQDNRETICQKF 1107

Query: 1877 LHHLDKSNSYIEHLPPKLEKKAREFIKGVPEK--------------------------KK 1776
             H  +  NSYI+ LP  LE++A+ FI+    K                          KK
Sbjct: 1108 QHKRE-FNSYIKKLPEGLEEEAKRFIQETQNKSLAKQSTSAGEGPHSSRKARKKEKLLKK 1166

Query: 1775 H-----IDDEDFMKLMNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMN 1611
                   + + F++L+  KY SSLAQ GEPVGV+AAQSVGEPSTQMTLNTFHLAGRGEMN
Sbjct: 1167 EKAAAAYEQDAFLELVKQKYLSSLAQAGEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMN 1226

Query: 1610 VTLGIPRLQEILMTASVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYVG 1431
            VTLGIPRLQEILM+AS  IKTP++TCP  + +S  E+   L   +KKV+V D+ EN+ V 
Sbjct: 1227 VTLGIPRLQEILMSASEVIKTPLLTCPFSQWRSKREVV-SLVSHVKKVSVADLIENMEVQ 1285

Query: 1430 L--RHHLYSRVYTLAMNLYRPASNSGISLKDYKETLTIQFVRELEDAIHNQINAIKRMHG 1257
            L   H   +RVY L M L        +SL++  ETL   F+ ELEDAI N +  + R+ G
Sbjct: 1286 LSVNHKTAARVYKLKMTL---KDTEFVSLENMHETLKTTFLGELEDAIENHVLYLSRLSG 1342

Query: 1256 IQAFDQPSQSKASKETDEEVSGMRGEEN---DDDGDVSXXXXXXXXXXXAQKRKRQSTDE 1086
            I+ F    + K+S E DE+ SG+ G EN   +DD D              QKRK+Q+TD+
Sbjct: 1343 IKNFASNPKPKSSNEADEDESGL-GTENAGVNDDDDDDDDDKGDDLGSDVQKRKQQATDD 1401

Query: 1085 VDYDDASEDEPNEGVLSTGFEQEKENGNCLDTEMDGDDVSRNSQDAEMDGDDDASNLPSE 906
            +DY+D S     +G  +   + + E G      ++ D+  ++ +    D  D+ASN+ +E
Sbjct: 1402 MDYEDGS-----DGGAAEDDDSDLEKGKSDVENLEEDETGKDEESEHTDDKDEASNVQNE 1456

Query: 905  SQSPXXXXXXXXXXXXXXXXXXRQLSRKDADRSIEVXXXXXXXXXXXXXXXTDEDPHILL 726
             ++                   +        +                     E+PH+L+
Sbjct: 1457 DEAISEGTKSSVGSSKGKTSFDKSSVELKGKKIRRAFYMVVKGTKFEVHFEFHEEPHMLI 1516

Query: 725  QQVALNVAKKVYIKSAGDIEHCQKI--DCSNGQVLCHS--------NVSAEEKKRNSALL 576
             Q+A   +KKVYI+ +G +  C+ +  D     V+  +        + S EE     A+ 
Sbjct: 1517 AQLAQKTSKKVYIRKSGKVSQCKMVSYDPDEKTVIWDNSKKPKRGESKSEEEDTSYWAVK 1576

Query: 575  TAGVDFKAFWEMQENLDVNCIYSNNIHSMLKTYGVEAARESIIREVSHVFNSYGITVDIR 396
             +GVDFK+FWEM ++LD++ +YSNNIH+ML TYGVEAAR +IIREV HVF+ YG+ +D R
Sbjct: 1577 ASGVDFKSFWEMHDDLDLSRLYSNNIHAMLTTYGVEAARATIIREVKHVFDIYGVKIDYR 1636

Query: 395  HLTLIADFMTHSGGYNPMSRSGGIAESVSPFSKITFETASKFIVEAALYGLTDDLESPSA 216
            HL+LIAD MTH+G Y PMSR G I+ES+SPF K++FETASKFIVEAA +GLTD L++PS+
Sbjct: 1637 HLSLIADHMTHTGSYLPMSRHGSISESLSPFLKMSFETASKFIVEAASHGLTDKLDTPSS 1696

Query: 215  RVCLGLPVKVGTGCFDVMQKVDI 147
            R+CLGLPVK+GTG FDVMQ++D+
Sbjct: 1697 RICLGLPVKMGTGSFDVMQQLDL 1719


>ref|XP_006402858.1| hypothetical protein EUTSA_v10005738mg [Eutrema salsugineum]
            gi|557103957|gb|ESQ44311.1| hypothetical protein
            EUTSA_v10005738mg [Eutrema salsugineum]
          Length = 1697

 Score = 1625 bits (4207), Expect = 0.0
 Identities = 910/1759 (51%), Positives = 1149/1759 (65%), Gaps = 79/1759 (4%)
 Frame = -3

Query: 5186 EGATESIEAVRFGFFTDEEVRKHSFVQSTSADLLHGVV-PAXXXXXXXXXXXXXDRAPCK 5010
            EGA++ +E+VRF F T+E+VRKHS ++ T+  LL  V  P              DR  CK
Sbjct: 8    EGASQVVESVRFSFMTEEDVRKHSVMKVTNPVLLDNVERPVPGGLYDPLMGPLDDRTSCK 67

Query: 5009 SCGQ-SGRCPGHCGHVALILPVYNPLLFNMLYAVLQRTCFFCHHFRAIRSKVENCISQLE 4833
            SCGQ S  CPGHCGH+ L+ P+Y+PLLFN+LY  LQRTCFFCHHF A ++ VE C+SQL+
Sbjct: 68   SCGQLSLVCPGHCGHIELVYPIYHPLLFNLLYNFLQRTCFFCHHFMANKNDVERCVSQLK 127

Query: 4832 LIMKGNVIGAKNLDSLYLEGHSNQEDSDGSHVSSTVSLGAQYHSLEHSK--QQKWTSLQL 4659
            LIMKGN++ AK LDS   +     EDS+            +    E S   +Q+WTSLQ 
Sbjct: 128  LIMKGNLVAAKQLDSRATDSSEECEDSE-----------MEKERCEDSDMGKQRWTSLQF 176

Query: 4658 TEAMSILDNFLKPKHVDCKNCGAKNPKITKPTFGWFK-TSMPDAHARANRIKGCKLKGSF 4482
             E   +++ FL+ K   C +C AK PK+ KP FGW +   M  +   AN I+G K+K S 
Sbjct: 177  AEVTDLMNTFLRLKSKSCGSCKAKPPKLEKPMFGWVRIVGMSASAIGANVIRGIKVKKS- 235

Query: 4481 VGEIEEDPSSDIENADNTSPWGNGSDTSEITPINE----TKRKKNKRGQAHPELLKESFS 4314
                    +S +EN        N SD S I  ++E    +++KK K  +   E  K   +
Sbjct: 236  --------ASSVENP-------NDSDDSGIDALSEVEDGSEKKKRKSSEVAEEFAKHQNN 280

Query: 4313 G--SLLPSEVRALLKLLWENEFELCSFICDIQRDSSDVLKDNAGYSMFFLDTILVPPIKF 4140
                L PSEV+ +LK LWENE E CSFI D+ +  S+    N  YSMFFL+ ILVPP KF
Sbjct: 281  TRRDLFPSEVKKILKGLWENEHEFCSFIGDLWQSESE----NVDYSMFFLENILVPPTKF 336

Query: 4139 RPPSKGGDSVMEHPQTVLLGKVIEANMRLGNAYESKSGHSKTVVDRWIALQQSVNVSFDS 3960
            R P+KGGDSVMEHPQTV L KV+E+N+ LGNA  +K    K ++ RW+ LQ+SVNV FDS
Sbjct: 337  RAPTKGGDSVMEHPQTVGLNKVLESNISLGNACTNKLDQPK-IISRWMNLQESVNVLFDS 395

Query: 3959 KTMGQGQRVGASGICQLLEKKDGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFA 3780
            KT     +   +GICQ LEKK+G+FRQKMMGKRVN ACRSVISPDP++AVN+IGIPP FA
Sbjct: 396  KTATVKSQKEGTGICQTLEKKEGLFRQKMMGKRVNHACRSVISPDPFIAVNDIGIPPCFA 455

Query: 3779 LRLTYPERVTPWNIGKLRDAIINGSEIHPGATHYADKSSVDLLXXXXXXXXXXXXRKLPS 3600
            L+LTYPERVTPWN+ KLR+AIING +IHPGATHY+DK S   L             KL S
Sbjct: 456  LKLTYPERVTPWNVEKLREAIINGPDIHPGATHYSDKVSTMKLPPTRKARIAIAR-KLFS 514

Query: 3599 SRGVVTQPGKSGDIDFEGKIVSRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRM 3420
            SRGV T+ GK+ D++FEGK+V RH+QDGD+VLVNRQPTLHKPSIMAH+VRVLKGEKTLR+
Sbjct: 515  SRGVTTELGKTCDVNFEGKVVYRHMQDGDVVLVNRQPTLHKPSIMAHMVRVLKGEKTLRL 574

Query: 3419 HYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVVPSRGEPIRALIQ----- 3255
            HYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQY  PS G+P+RALIQ     
Sbjct: 575  HYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYSRPSNGDPLRALIQVVHPS 634

Query: 3254 ---------------------------DHIISAVLLTKKDTFLSRDEYSQLLYXXXXXXX 3156
                                       DHI+S+VLLTK+DTFL +DE++QLL+       
Sbjct: 635  YFFKSLYSFHELGCLPVIFMDLACTQQDHIVSSVLLTKRDTFLDKDEFNQLLFSSGVTDM 694

Query: 3155 XXXXXSCKPGQKVCL-VSEDEMQTLQPAILKPEPLWTGKQVITAVLNHITKGHPPFTVEK 2979
                 S + G+KV    S  E+ T+ PAILKP PLWTGKQVITAVLN ITKGHPPF+VEK
Sbjct: 695  VLSSFSGRSGKKVIQSASNAELLTVTPAILKPVPLWTGKQVITAVLNEITKGHPPFSVEK 754

Query: 2978 EGKIPREYF-----------GSNTGEDDLSVERKTSXXXXXXXXXXXXEILYVSKNDLVR 2832
              K+P ++F           G +  ++ L+ ++                 L V KN+ VR
Sbjct: 755  ATKLPVDFFKCRSKEVKCKSGESNEKNHLTTKQDFDESWKKDLNEDK---LLVRKNEFVR 811

Query: 2831 GVIDKAQFGSYGLVHTVQELYGPKTAGILLSAFSRLFTVFLQMHGFTCGVDDLLILKYRD 2652
            GVIDKAQF  YGLVHTV ELYG   AG LLS FSRLFTVFLQ+ GFTCGVDDL+ILK  D
Sbjct: 812  GVIDKAQFADYGLVHTVHELYGSNAAGNLLSVFSRLFTVFLQLQGFTCGVDDLIILKDMD 871

Query: 2651 IERKQELEKCQDFGXXXXXXXXXXXXKRKDIRNVYSKFLGIKYD-EIDPKELPNEIEYGI 2475
             ER ++L++C+  G                   V  K  GI  D +IDP+++ + IE  +
Sbjct: 872  GERTKQLQECEQVG-----------------ERVLRKTFGIAVDVQIDPQDMKSRIERIL 914

Query: 2474 CRYGEVGTTSLDNEMRKHLSNASTE-VNKDLFVKGLLKPFPKNCFSLMTTTGAKGGMVNF 2298
               GE    SLD  +   L+  S++ V  DL   GLLKP  KNC SLMT +GAKG  VNF
Sbjct: 915  YEDGESALASLDRSVVNELNQCSSKGVMNDLLSDGLLKPPGKNCISLMTISGAKGSKVNF 974

Query: 2297 QQVSSLLGQQDLEGKRVPRMVSGKTLPSFLPWDWSPRAGGFISDNFLTGLHPQEYYFHCM 2118
            QQ+SS LGQQDLEGKRVPRMVSGKTLP F PWDWSPRAGGFISD FL+GL PQEYYFHCM
Sbjct: 975  QQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFISDRFLSGLRPQEYYFHCM 1034

Query: 2117 AGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIIQFSYGEDGVDVHQT 1938
            AGREGLVDTAVKTSRSGYLQRCL+KNLE LKV YD TVRDADGSIIQF YGEDGVDVH++
Sbjct: 1035 AGREGLVDTAVKTSRSGYLQRCLMKNLESLKVNYDCTVRDADGSIIQFQYGEDGVDVHRS 1094

Query: 1937 SFISKFKALEENHQILREKFLHH-LDKSNSYIEHLPPKLEKKAREFIKGVPEKK----KH 1773
            SFI KF+ L  N  ++ ++     L  S+SYI  LP  L+  A +F++ +P  +    K 
Sbjct: 1095 SFIGKFRELTVNQDMILQRCSEDMLSGSSSYITDLPITLKNGAEKFVEAMPMNERIASKL 1154

Query: 1772 IDDEDFMKLMNHKYFSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIP 1593
            +  ED +KL+  K+F+SLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIP
Sbjct: 1155 VRQEDLLKLVKSKFFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIP 1214

Query: 1592 RLQEILMTASVNIKTPIMTCPLLKEKSTDEIAKGLAQTLKKVTVGDITENIYVGLRHHLY 1413
            RLQEILMTA+ NIKTPIMTCPLLK K+TD+ AK +   L+K+ V DI +++ V +  +  
Sbjct: 1215 RLQEILMTAAANIKTPIMTCPLLKGKTTDD-AKKITDKLRKIAVADIIKSMEVSVIPYAV 1273

Query: 1412 SR-----VYTLAMNLYRP---ASNSGISLKDYKETLTIQFVRELEDAIHNQINAIKRMHG 1257
                   ++ L + LY+P     ++ I+ +D+KET+T+ F+R+LEDAI   +  + R+ G
Sbjct: 1274 HEGEVCSIHKLKIKLYKPEHYPKHTDITDEDWKETMTVMFLRKLEDAIEIHVKMLVRIRG 1333

Query: 1256 IQAFDQPSQSKASKET--DEEVSGMRGEENDDDGDVSXXXXXXXXXXXAQKRKRQSTDEV 1083
            I++ ++ ++  +  ET  D+ VSG   E++DDD D             AQK+K+Q+ D V
Sbjct: 1334 IKS-EKDTRPTSGNETDNDDSVSGKHTEDDDDD-DEGEGTEVDDLGADAQKQKKQAVDVV 1391

Query: 1082 DYDDASEDEPNEGVLSTGFEQEKENGNCLDTEMDGDDVSRNSQDAEMDGDDDASNLPSES 903
            DY++ SEDE +E    +G E  + +    + E+  ++     +DA++  ++     P + 
Sbjct: 1392 DYEENSEDEKDEPSSISGVEDPETDNEDENAEVSREETPEPQEDADVSKEETLE--PQKE 1449

Query: 902  QSPXXXXXXXXXXXXXXXXXXRQLSRKDADRSIEVXXXXXXXXXXXXXXXTDEDPHILLQ 723
                                 R +  K   ++ EV                 E+PHILL 
Sbjct: 1450 VKNVEEGSRKKRRKFVPGKNDRHIFAKFKGKTFEV-----------HFKFLSEEPHILLS 1498

Query: 722  QVALNVAKKVYIKSAGDIEHCQKIDCSNGQVLCHSN-------VSAEEKKRNSALLTAGV 564
            Q+A   A+KVYI+++G IE     +C + QV+ + +       +S +EKK + AL  +GV
Sbjct: 1499 QIAQKTAQKVYIQNSGKIERSTVANCGDPQVIYYGDNPKEREEISNDEKKASPALHASGV 1558

Query: 563  DFKAFWEMQENLDVNCIYSNNIHSMLKTYGVEAARESIIREVSHVFNSYGITVDIRHLTL 384
            DF A WE Q+ LDV  +YSN+IH ML T+GVEAARE+IIRE++HVF SYGI+V IRHL L
Sbjct: 1559 DFLALWEYQDKLDVRYLYSNSIHDMLNTFGVEAARETIIREINHVFKSYGISVSIRHLNL 1618

Query: 383  IADFMTHSGGYNPMSRSGGIAESVSPFSKITFETASKFIVEAALYGLTDDLESPSARVCL 204
            IAD+MT SGGY PMSR GGIAES SPF ++TFETA+KFIV+AA YG  D LE+PSAR+CL
Sbjct: 1619 IADYMTFSGGYRPMSRMGGIAESTSPFCRMTFETATKFIVQAATYGEVDRLETPSARICL 1678

Query: 203  GLPVKVGTGCFDVMQKVDI 147
            GLP   GTGCFD++Q++++
Sbjct: 1679 GLPALSGTGCFDLLQRMEL 1697